Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | Life Stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN024518 | ENCODE | Download | 13,752 | 861,533 | transcription start sites | hg19 | Muscularis mucosa | Tissue | UBERON:0004648 | Digestive | ENCSR669JBL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 790,081 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Esophagus muscularis mucosa tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=musculature,digestive system;Submitted_track_name=ENCSR669JBL_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Muscularis mucosa;tissue_of_origin=Esophagus;schema=BED6+5 | Digestive | Adult | ENCODE Muscularis mucosa (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR669JBL] [Life stage: Adult] |
| NGEN024542 | ENCODE | Download | 8,293 | 587,217 | transcription start sites | hg38 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR007RIV | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 216,807 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-MEL-5 cytosolic fraction adult 24 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR007RIV_rep1_1_ENCSR007RIV_rep1_1_rampage_idr.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR007RIV] [Life stage: Adult] |
| NGEN024608 | ENCODE | Download | 10,128 | 735,678 | transcription start sites | hg19 | Liver | Tissue | UBERON:0002107 | Liver | ENCSR000AGP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 596,439 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Liver tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF001YXQ-ENCFF001YXR_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Embryonic | ENCODE Liver (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGP] [Life stage: Embryonic] |
| NGEN024626 | ENCODE | Download | 10,826 | 783,209 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR506WDZ | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 502,941 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-MEL-5 nuclear fraction adult 24 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF105STS-ENCFF875TUA_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR506WDZ] [Life stage: Adult] |
| NGEN024627 | ENCODE | Download | 26,908 | 3,309,292 | transcription start sites | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR627SPU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,338,508 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Spleen tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=digestive system,immune system;Submitted_track_name=ENCSR627SPU_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Lymphatic | Adult | ENCODE Spleen (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR627SPU] [Life stage: Adult] |
| NGEN024643 | ENCODE | Download | 22,822 | 2,568,674 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR743LXD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,215,371 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Adrenal gland tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;System=endocrine system;Submitted_track_name=ENCSR743LXD_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR743LXD] [Life stage: Adult] |
| NGEN024657 | ENCODE | Download | 8,485 | 443,621 | transcription start sites | hg19 | Hepatocyte | In vitro differentiated cells | CL:0000182 | Liver | ENCSR985XGK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 426,701 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Hepatocyte originated from H9, female embryo (5 days) embryonic 5 days;Lab=Thomas Gingeras, CSHL;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF189ARE-ENCFF773OYP_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Embryonic | ENCODE Hepatocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR985XGK] [Life stage: Embryonic] |
| NGEN024688 | ENCODE | Download | 5,912 | 409,457 | transcription start sites | hg38 | Liver | Tissue | UBERON:0002107 | Liver | ENCSR000AGP | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 156,177 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Liver tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000AGP_rep1_1_ENCSR000AGP_rep1_1_rampage_idr.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Digestive | Embryonic | ENCODE Liver (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGP] [Life stage: Embryonic] |
| NGEN024713 | ENCODE | Download | 5,439 | 300,699 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR215UXA | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 143,645 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 0.5 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR215UXA_rep1_1_ENCSR215UXA_rep2_1_rampage_idr.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+8 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR215UXA] [Life stage: Newborn] |
| NGEN024714 | ENCODE | Download | 10,831 | 551,652 | transcription start sites | hg38 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR054RIR | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 612,184 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-MEL-5 adult 24 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR054RIR_rep1_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR054RIR] [Life stage: Adult] |
| NGEN024717 | ENCODE | Download | 8,508 | 403,080 | transcription start sites | hg38 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 441,375 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Daoy child 4 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR700NMZ_rep1_1_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Child | ENCODE Daoy (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN024754 | ENCODE | Download | 4,755 | 310,556 | transcription start sites | hg38 | Thyroid gland | Tissue | UBERON:0002046 | Endocrine | ENCSR000AGY | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 126,091 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks);Lab=Thomas Gingeras, CSHL;System=endocrine system;Submitted_track_name=ENCSR000AGY_rep1_1_ENCSR000AGY_rep1_1_rampage_idr.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Endocrine | Embryonic | ENCODE Thyroid gland (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGY] [Life stage: Embryonic] |
| NGEN024756 | ENCODE | Download | 9,879 | 462,524 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR773EZK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 511,615 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1.5 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR773EZK_rep1_1_rampage_peaks.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+5 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR773EZK] [Life stage: Newborn] |
| NGEN024779 | ENCODE | Download | 7,225 | 498,968 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000068 | Heart | ENCSR419VNG | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 190,756 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Pericardium fibroblast NONE and female embryo (20 weeks);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR419VNG_rep1_1_ENCSR419VNG_rep1_1_rampage_idr.bb;previous_filer_cell_type=Fibroblast of pericardium;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Fibroblast;tissue_of_origin=Pericardium;schema=BED6+8 | Cardiovascular | Embryonic | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR419VNG] [Life stage: Embryonic] |
| NGEN024791 | ENCODE | Download | 7,837 | 375,417 | transcription start sites | hg19 | HT1080 | Cell line | EFO:0002059 | Connective Tissue | ENCSR348DYP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 428,965 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=HT1080 adult 35 years;Lab=Thomas Gingeras, CSHL;Submitted_track_name=ENCSR348DYP_rep1_1_rampage_peaks.bb;Experiment_date_released=03/16/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Skeletal | Adult | ENCODE HT1080 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR348DYP] [Life stage: Adult] |
| NGEN024803 | ENCODE | Download | 34,398 | 4,836,082 | transcription start sites | hg38 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR706VZW | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,548,298 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Tibial nerve tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=peripheral nervous system;Submitted_track_name=ENCSR706VZW_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Adult | ENCODE Tibial nerve (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR706VZW] [Life stage: Adult] |
| NGEN024839 | ENCODE | Download | 10,822 | 611,316 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR007RIV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 650,893 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-MEL-5 cytosolic fraction adult 24 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF498NER-ENCFF674FXJ_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR007RIV] [Life stage: Adult] |
| NGEN024868 | ENCODE | Download | 13,881 | 991,410 | transcription start sites | hg19 | Skin | Tissue | UBERON:0004264 | Skin | ENCSR251EJL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 689,343 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Lower leg skin tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR251EJL_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Skin;tissue_of_origin=Lower leg;schema=BED6+5 | Integumentary | Adult | ENCODE Skin (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR251EJL] [Life stage: Adult] |
| NGEN024877 | ENCODE | Download | 24,800 | 3,268,169 | transcription start sites | hg19 | Lung | Tissue | UBERON:0008952 | Lung | ENCSR790PBX | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,326,320 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Upper lobe of left lung tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR790PBX_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Lung;tissue_of_origin=Upper lobe;schema=BED6+5 | Respiratory | Adult | ENCODE Lung (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR790PBX] [Life stage: Adult] |
| NGEN024892 | ENCODE | Download | 13,241 | 891,058 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR376IXU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 697,449 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Epithelial cell of alveolus of lung NONE and female embryo (21 weeks);Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR376IXU_rep1_1_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung;schema=BED6+5 | Respiratory | Embryonic | ENCODE Epithelial cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR376IXU] [Life stage: Embryonic] |
| NGEN024904 | ENCODE | Download | 4,534 | 269,888 | transcription start sites | hg19 | SJSA1 | Cell line | EFO:0002330 | Bone | ENCSR108KHH | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 119,170 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SJSA1 adult 19 years;Lab=Thomas Gingeras, CSHL;System=skeletal system;Submitted_track_name=ENCFF179ANN-ENCFF398YOJ_ENCFF193RJG-ENCFF472YBU_rampage_idr.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+8 | Skeletal | Adult | ENCODE SJSA1 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR108KHH] [Life stage: Adult] |
| NGEN024915 | ENCODE | Download | 4,696 | 362,091 | transcription start sites | hg19 | Temporal lobe | Tissue | UBERON:0001871 | Brain | ENCSR000AGX | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 125,468 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF001YXC-ENCFF001YXG_ENCFF001YYA-ENCFF001YYB_rampage_idr.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+8 | Nervous | Embryonic | ENCODE Temporal lobe (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGX] [Life stage: Embryonic] |
| NGEN024952 | ENCODE | Download | 3,809 | 215,041 | transcription start sites | hg38 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 101,939 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Daoy child 4 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR700NMZ_rep1_1_ENCSR700NMZ_rep1_1_rampage_idr.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Nervous | Child | ENCODE Daoy (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN024968 | ENCODE | Download | 12,961 | 731,774 | transcription start sites | hg38 | SJCRH30 | Cell line | EFO:0005722 | Skeletal Muscle | ENCSR540YVD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 707,270 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SJCRH30 child 17 years;Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCSR540YVD_rep1_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Muscular | Child | ENCODE SJCRH30 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR540YVD] [Life stage: Child] |
| NGEN024995 | ENCODE | Download | 9,445 | 503,651 | transcription start sites | hg38 | GM23248 | Cell line | EFO:0005723 | Skin | ENCSR949PHV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 510,116 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=GM23248 adult 53 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR949PHV_rep1_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Integumentary | Adult | ENCODE GM23248 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR949PHV] [Life stage: Adult] |
| NGEN025016 | ENCODE | Download | 5,757 | 249,079 | transcription start sites | hg19 | A375 | Cell line | EFO:0002103 | Skin | ENCSR080XAB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 279,445 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=A375 adult 54 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF012FJO-ENCFF505SJE_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Integumentary | Adult | ENCODE A375 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR080XAB] [Life stage: Adult] |
| NGEN025021 | ENCODE | Download | 49,907 | 8,241,540 | transcription start sites | hg19 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR297QGC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,167,632 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Transverse colon tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR297QGC_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR297QGC] [Life stage: Adult] |
| NGEN025022 | ENCODE | Download | 3,299 | 164,656 | transcription start sites | hg38 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 86,427 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=RPMI7951 adult 18 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR104PJD_rep1_1_ENCSR104PJD_rep1_1_rampage_idr.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Integumentary | Adult | ENCODE RPMI-7951 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025058 | ENCODE | Download | 4,526 | 177,140 | transcription start sites | hg19 | HT-29 | Cell line | EFO:0001193 | Digestive | ENCSR295GUQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 210,544 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=HT-29 adult 44 years;Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCFF506EOD-ENCFF863QFW_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Adult | ENCODE HT-29 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR295GUQ] [Life stage: Adult] |
| NGEN025062 | ENCODE | Download | 9,300 | 669,525 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR458JVO | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 516,926 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCSR458JVO_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR458JVO] [Life stage: Adult] |
| NGEN025063 | ENCODE | Download | 15,005 | 1,019,781 | transcription start sites | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR464UVO | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 830,488 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Heart left ventricle tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR464UVO_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR464UVO] [Life stage: Adult] |
| NGEN025100 | ENCODE | Download | 8,551 | 613,944 | transcription start sites | hg38 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 220,704 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR824YLV_rep1_1_ENCSR824YLV_rep1_1_rampage_idr.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+8 | Respiratory | Unknown | ENCODE NCI-H460 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025109 | ENCODE | Download | 8,388 | 367,043 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR115BCB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 401,803 | 02/08/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5.5 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR115BCB_rep1_1_rampage_peaks.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+5 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR115BCB] [Life stage: Newborn] |
| NGEN025136 | ENCODE | Download | 4,536 | 176,138 | transcription start sites | hg38 | HT-29 | Cell line | EFO:0001193 | Digestive | ENCSR295GUQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 211,163 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=HT-29 adult 44 years;Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR295GUQ_rep1_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE HT-29 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR295GUQ] [Life stage: Adult] |
| NGEN025139 | ENCODE | Download | 16,366 | 991,126 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR930XIH | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 958,453 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Adrenal gland tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=endocrine system;Submitted_track_name=ENCSR930XIH_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR930XIH] [Life stage: Adult] |
| NGEN025143 | ENCODE | Download | 11,334 | 648,486 | transcription start sites | hg19 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 674,523 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCFF703QJX-ENCFF244ERL_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Respiratory | Unknown | ENCODE NCI-H460 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025153 | ENCODE | Download | 12,408 | 787,219 | transcription start sites | hg38 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR321NPB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 652,424 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR321NPB_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR321NPB] [Life stage: Adult] |
| NGEN025186 | ENCODE | Download | 11,265 | 628,560 | transcription start sites | hg38 | Neuronal progenitor cell | Stem cell | NTR:0000711 | Nervous | ENCSR602PHV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 572,300 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days) embryonic 5 days;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR602PHV_rep2_1_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Neuronal progenitor cell;old_biosample_type=In vitro differentiated cells;schema=BED6+5 | Nervous | Embryonic | ENCODE Neuronal progenitor cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR602PHV] [Life stage: Embryonic] |
| NGEN025210 | ENCODE | Download | 36,237 | 4,316,704 | transcription start sites | hg19 | Lung | Tissue | UBERON:0008952 | Lung | ENCSR004UBM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,592,744 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Upper lobe of left lung tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR004UBM_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Lung;tissue_of_origin=Upper lobe;schema=BED6+5 | Respiratory | Adult | ENCODE Lung (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR004UBM] [Life stage: Adult] |
| NGEN025218 | ENCODE | Download | 80,587 | 16,193,101 | transcription start sites | hg38 | Stomach | Tissue | UBERON:0000945 | Digestive | ENCSR792XFE | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 3,794,587 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Stomach tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR792XFE_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE Stomach (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR792XFE] [Life stage: Adult] |
| NGEN025226 | ENCODE | Download | 24,657 | 2,223,104 | transcription start sites | hg38 | Prostate gland | Tissue | UBERON:0002367 | Male Reproductive | ENCSR655HUL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,171,370 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Prostate gland tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=reproductive system;Submitted_track_name=ENCSR655HUL_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Reproductive | Adult | ENCODE Prostate gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR655HUL] [Life stage: Adult] |
| NGEN025238 | ENCODE | Download | 3,050 | 196,115 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000066 | Heart | ENCSR177YJM | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 82,173 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Cardiac ventricle fibroblast NONE and male adult (18 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR177YJM_rep1_1_ENCSR177YJM_rep1_1_rampage_idr.bb;previous_filer_cell_type=Fibroblast of cardiac ventricle;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Fibroblast;tissue_of_origin=Cardiac ventricle;schema=BED6+8 | Cardiovascular | Adult | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR177YJM] [Life stage: Adult] |
| NGEN025249 | ENCODE | Download | 8,085 | 596,207 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:2000071 | Breast | ENCSR663WYF | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 214,833 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Mammary microvascular endothelial cell female adult (26 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR663WYF_rep1_1_ENCSR663WYF_rep1_1_rampage_idr.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Endothelial cell;tissue_of_origin=Mammary microvascular;schema=BED6+8 | Reproductive | Adult | ENCODE Endothelial cell (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR663WYF] [Life stage: Adult] |
| NGEN025254 | ENCODE | Download | 7,294 | 412,292 | transcription start sites | hg19 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR410OSB | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 341,258 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=GM23338 originated from GM23248 adult 53 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF774ION-ENCFF017OQQ_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Stem Cell | Adult | ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult] |
| NGEN025256 | ENCODE | Download | 7,309 | 483,687 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR376IXU | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 193,257 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Epithelial cell of alveolus of lung NONE and female embryo (21 weeks);Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR376IXU_rep1_1_ENCSR376IXU_rep1_1_rampage_idr.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung;schema=BED6+8 | Respiratory | Embryonic | ENCODE Epithelial cell (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR376IXU] [Life stage: Embryonic] |
| NGEN025281 | ENCODE | Download | 6,099 | 473,861 | transcription start sites | hg19 | Camera-type eye | Tissue | UBERON:0000019 | Eye | ENCSR000AHC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 310,255 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Camera-type eye tissue female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;System=sensory system;Submitted_track_name=ENCFF001YYS-ENCFF001YYT_rampage_peaks.bb;Experiment_date_released=09/03/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Sensory | Embryonic | ENCODE Camera-type eye (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AHC] [Life stage: Embryonic] |
| NGEN025283 | ENCODE | Download | 9,779 | 524,129 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:2000071 | Breast | ENCSR663WYF | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 548,952 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Mammary microvascular endothelial cell female adult (26 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR663WYF_rep2_1_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Endothelial cell;tissue_of_origin=Mammary microvascular;schema=BED6+5 | Reproductive | Adult | ENCODE Endothelial cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR663WYF] [Life stage: Adult] |
| NGEN025356 | ENCODE | Download | 4,569 | 181,611 | transcription start sites | hg19 | Neuronal progenitor cell | Stem cell | NTR:0000711 | Nervous | ENCSR602PHV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 235,880 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days) embryonic 5 days;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF833RRH-ENCFF963HXO_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Neuronal progenitor cell;old_biosample_type=In vitro differentiated cells;schema=BED6+5 | Nervous | Embryonic | ENCODE Neuronal progenitor cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR602PHV] [Life stage: Embryonic] |
| NGEN025384 | ENCODE | Download | 9,320 | 1,149,977 | transcription start sites | hg19 | Aorta | Tissue | UBERON:0001515 | Blood Vessel | ENCSR632GYF | 1 | 1_1 ,1_2 | Not applicable | RAMPAGE | bed idr_peak | 243,478 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Thoracic aorta tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR632GYF_rep1_1_ENCSR632GYF_rep1_1_rampage_idr.bb;Project=EN-TEx;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Aorta;tissue_of_origin=Thoracic;pre_origin_deriv_fix_system=Cardiovascular;pre_origin_deriv_fix_tissue=Blood Vessel;schema=BED6+8 | Cardiovascular | Adult | ENCODE Aorta (repl. 1) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR632GYF] [Life stage: Adult] |
| NGEN025431 | ENCODE | Download | 15,619 | 1,450,536 | transcription start sites | hg38 | Frontal cortex | Tissue | UBERON:0001870 | Brain | ENCSR000AGM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 892,473 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR000AGM_rep1_1_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Embryonic | ENCODE Frontal cortex (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGM] [Life stage: Embryonic] |
| NGEN025444 | ENCODE | Download | 7,435 | 352,847 | transcription start sites | hg19 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR585QYX | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 366,304 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=PC-3 adult 62 years;Lab=Thomas Gingeras, CSHL;System=reproductive system;Submitted_track_name=ENCFF110DHT-ENCFF144SWZ_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Reproductive | Adult | ENCODE PC-3 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR585QYX] [Life stage: Adult] |
| NGEN025467 | ENCODE | Download | 6,220 | 386,006 | transcription start sites | hg38 | Temporal lobe | Tissue | UBERON:0001871 | Brain | ENCSR000AGX | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 327,447 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR000AGX_rep2_1_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Embryonic | ENCODE Temporal lobe (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGX] [Life stage: Embryonic] |
| NGEN025468 | ENCODE | Download | 3,299 | 164,749 | transcription start sites | hg19 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 86,260 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=RPMI7951 adult 18 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF356BLS-ENCFF550XGN_ENCFF826BKC-ENCFF367GKQ_rampage_idr.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+8 | Integumentary | Adult | ENCODE RPMI-7951 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025470 | ENCODE | Download | 13,412 | 777,945 | transcription start sites | hg19 | Heart | Tissue | UBERON:0000948 | Heart | ENCSR724SZY | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 806,083 | 10/24/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Heart tissue male adult (34 years);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCFF002BEL-ENCFF002BEM_rampage_peaks.bb;Experiment_date_released=09/03/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Cardiovascular | Adult | ENCODE Heart (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR724SZY] [Life stage: Adult] |
| NGEN025495 | ENCODE | Download | 14,778 | 1,351,388 | transcription start sites | hg19 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR722NWC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 726,043 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Tibial nerve tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=peripheral nervous system;Submitted_track_name=ENCSR722NWC_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Nervous | Adult | ENCODE Tibial nerve (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR722NWC] [Life stage: Adult] |
| NGEN025499 | ENCODE | Download | 6,485 | 394,925 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR469BXX | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 169,697 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR469BXX_rep1_1_ENCSR469BXX_rep2_1_rampage_idr.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+8 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR469BXX] [Life stage: Newborn] |
| NGEN025558 | ENCODE | Download | 8,481 | 400,730 | transcription start sites | hg19 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 440,281 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Daoy child 4 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF091MAK-ENCFF263SXU_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Nervous | Child | ENCODE Daoy (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN025562 | ENCODE | Download | 8,898 | 707,425 | transcription start sites | hg38 | Epithelium | Tissue | UBERON:0008367 | Breast | ENCSR909QWB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 423,085 | 11/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Breast epithelium tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;Submitted_track_name=ENCSR909QWB_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Epithelium;tissue_of_origin=Breast;old_tissue_category=Breast;schema=BED6+5 | Reproductive | Adult | ENCODE Epithelium (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR909QWB] [Life stage: Adult] |
| NGEN025576 | ENCODE | Download | 5,753 | 250,614 | transcription start sites | hg38 | A375 | Cell line | EFO:0002103 | Skin | ENCSR080XAB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 279,197 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=A375 adult 54 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR080XAB_rep1_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Integumentary | Adult | ENCODE A375 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR080XAB] [Life stage: Adult] |
| NGEN025589 | ENCODE | Download | 41,952 | 7,725,848 | transcription start sites | hg38 | Stomach | Tissue | UBERON:0000945 | Digestive | ENCSR497BYB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,913,299 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Stomach tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR497BYB_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE Stomach (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR497BYB] [Life stage: Adult] |
| NGEN025597 | ENCODE | Download | 12,165 | 725,530 | transcription start sites | hg19 | Epithelial cell | Primary cell | CL:0002518 | Kidney | ENCSR100NLN | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 680,924 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Kidney epithelial cell male embryo (22 weeks) and male newborn;Lab=Thomas Gingeras, CSHL;System=excretory system;Submitted_track_name=ENCFF529ZBV-ENCFF884RAI_rampage_peaks.bb;previous_filer_cell_type=Kidney epithelial cell;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Epithelial cell;tissue_of_origin=Kidney;old_tissue_category=Kidney;schema=BED6+5 | Renal | Newborn | ENCODE Epithelial cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR100NLN] [Life stage: Newborn] |
| NGEN025614 | ENCODE | Download | 7,053 | 264,933 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR967IUK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 338,121 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR967IUK_rep1_1_rampage_peaks.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+5 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR967IUK] [Life stage: Newborn] |
| NGEN025629 | ENCODE | Download | 6,990 | 289,982 | transcription start sites | hg19 | H4 | Cell line | EFO:0002184 | Brain | ENCSR850NOP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 339,291 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=H4 adult 37 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF514CKB-ENCFF325OQL_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Nervous | Adult | ENCODE H4 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR850NOP] [Life stage: Adult] |
| NGEN025641 | ENCODE | Download | 84,453 | 15,401,860 | transcription start sites | hg38 | Vagina | Tissue | UBERON:0000996 | Female Reproductive | ENCSR219EAT | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 3,920,452 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Vagina tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=reproductive system;Submitted_track_name=ENCSR219EAT_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Reproductive | Adult | ENCODE Vagina (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR219EAT] [Life stage: Adult] |
| NGEN025643 | ENCODE | Download | 13,316 | 896,957 | transcription start sites | hg38 | Adipose | Tissue | UBERON:0002190 | Adipose | ENCSR419MZM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 719,027 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Subcutaneous adipose tissue tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR419MZM_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Adipose;tissue_of_origin=Subcutaneous;schema=BED6+5 | Integumentary | Adult | ENCODE Adipose (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR419MZM] [Life stage: Adult] |
| NGEN025661 | ENCODE | Download | 10,461 | 717,377 | transcription start sites | hg19 | Spinal cord | Tissue | UBERON:0002240 | Nervous | ENCSR000AGV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 596,843 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF001YXY-ENCFF001YXZ_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Nervous | Embryonic | ENCODE Spinal cord (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGV] [Life stage: Embryonic] |
| NGEN025662 | ENCODE | Download | 12,276 | 733,039 | transcription start sites | hg19 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR698NAQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 642,047 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Sigmoid colon tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR698NAQ_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR698NAQ] [Life stage: Adult] |
| NGEN025663 | ENCODE | Download | 4,794 | 300,234 | transcription start sites | hg19 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR786DTS | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 128,697 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-N-DZ treated with dimethyl sulfoxide for 72 hours child 2 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF434KKR-ENCFF334LMN_ENCFF616DFP-ENCFF211QWK_rampage_idr.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+8 | Nervous | Child | ENCODE SK-N-DZ (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR786DTS] [Life stage: Child] |
| NGEN025704 | ENCODE | Download | 11,088 | 667,550 | transcription start sites | hg38 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 666,724 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR824YLV_rep2_1_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Respiratory | Unknown | ENCODE NCI-H460 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025709 | ENCODE | Download | 4,892 | 173,572 | transcription start sites | hg19 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 221,394 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=RPMI7951 adult 18 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF826BKC-ENCFF367GKQ_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Integumentary | Adult | ENCODE RPMI-7951 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025769 | ENCODE | Download | 9,783 | 556,051 | transcription start sites | hg19 | Thyroid gland | Tissue | UBERON:0002046 | Endocrine | ENCSR000AGY | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 555,421 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks);Lab=Thomas Gingeras, CSHL;System=endocrine system;Submitted_track_name=ENCFF001YXU-ENCFF001YXV_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Endocrine | Embryonic | ENCODE Thyroid gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGY] [Life stage: Embryonic] |
| NGEN025776 | ENCODE | Download | 6,049 | 359,148 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000093 | Lung | ENCSR540CRO | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 157,369 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Bronchus fibroblast of lung;Lab=Thomas Gingeras, CSHL;System=respiratory system;Submitted_track_name=ENCSR540CRO_rep1_1_ENCSR540CRO_rep1_1_rampage_idr.bb;previous_filer_cell_type=Fibroblast of lung;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Fibroblast;tissue_of_origin=Lung;old_tissue_category=Lung;schema=BED6+8 | Respiratory | Unknown | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR540CRO] [Life stage: Unknown] |
| NGEN025789 | ENCODE | Download | 8,783 | 377,032 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR773EZK | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 416,800 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1.5 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR773EZK_rep2_1_rampage_peaks.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+5 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR773EZK] [Life stage: Newborn] |
| NGEN025790 | ENCODE | Download | 7,141 | 274,090 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR413FKS | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 328,077 | 02/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3.5 days newborn 2-4 days;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;Submitted_track_name=ENCSR413FKS_rep2_1_rampage_peaks.bb;previous_filer_cell_type=Foreskin keratinocyte;Experiment_date_released=10/10/2017;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Keratinocyte;tissue_of_origin=Foreskin;schema=BED6+5 | Integumentary | Newborn | ENCODE Keratinocyte (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR413FKS] [Life stage: Newborn] |
| NGEN025843 | ENCODE | Download | 10,993 | 546,639 | transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000AER | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 603,851 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=K562 adult 53 years;Lab=Thomas Gingeras, CSHL;System=immune system;Submitted_track_name=ENCFF001RDX-ENCFF001RDR_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Cardiovascular | Adult | ENCODE K562 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AER] [Life stage: Adult] |
| NGEN025852 | ENCODE | Download | 8,136 | 461,082 | transcription start sites | hg19 | Skeletal muscle tissue | Tissue | UBERON:0001134 | Skeletal Muscle | ENCSR000AGT | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 400,542 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCFF001YVW-ENCFF001YVX_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Muscular | Embryonic | ENCODE Skeletal muscle tissue (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGT] [Life stage: Embryonic] |
| NGEN025872 | ENCODE | Download | 985 | 29,040 | transcription start sites | hg38 | Myoblast | Primary cell | CL:0000515 | Skeletal Muscle | ENCSR765LMM | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 40,880 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Skeletal muscle myoblast;Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCSR765LMM_rep2_1_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Myoblast;tissue_of_origin=Skeletal muscle;schema=BED6+5 | Muscular | Unknown | ENCODE Myoblast (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR765LMM] [Life stage: Unknown] |
| NGEN025875 | ENCODE | Download | 12,856 | 716,301 | transcription start sites | hg19 | Epithelium | Tissue | UBERON:0006920 | Digestive | ENCSR930RDW | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 662,229 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Esophagus squamous epithelium tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR930RDW_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;premapping_cell_type=Epithelium;tissue_of_origin=Esophagus squamous;schema=BED6+5 | Digestive | Adult | ENCODE Epithelium (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR930RDW] [Life stage: Adult] |
| NGEN025893 | ENCODE | Download | 6,410 | 275,159 | transcription start sites | hg19 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR786DTS | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 310,143 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-N-DZ treated with dimethyl sulfoxide for 72 hours child 2 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCFF616DFP-ENCFF211QWK_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Nervous | Child | ENCODE SK-N-DZ (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR786DTS] [Life stage: Child] |
| NGEN025902 | ENCODE | Download | 13,453 | 1,065,193 | transcription start sites | hg38 | Pancreas | Tissue | UBERON:0001150 | Digestive | ENCSR366BLN | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 686,408 | 08/03/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Body of pancreas tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;Submitted_track_name=ENCSR366BLN_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE Pancreas (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR366BLN] [Life stage: Adult] |
| NGEN025912 | ENCODE | Download | 4,502 | 178,125 | transcription start sites | hg19 | HT1080 | Cell line | EFO:0002059 | Connective Tissue | ENCSR352ANU | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 208,783 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=HT1080 nuclear fraction adult 35 years;Lab=Thomas Gingeras, CSHL;Submitted_track_name=ENCFF278UNI-ENCFF145LPN_rampage_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Skeletal | Adult | ENCODE HT1080 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR352ANU] [Life stage: Adult] |
| NGEN025919 | ENCODE | Download | 13,241 | 997,220 | transcription start sites | hg19 | Gastroesophageal sphincter | Tissue | UBERON:0004550 | Digestive | ENCSR315BZA | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 651,662 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Gastroesophageal sphincter tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=musculature,digestive system;Submitted_track_name=ENCSR315BZA_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Adult | ENCODE Gastroesophageal sphincter (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR315BZA] [Life stage: Adult] |
| NGEN025920 | ENCODE | Download | 22,288 | 2,354,632 | transcription start sites | hg19 | Smooth muscle cell | In vitro differentiated cells | CL:0000192 | Muscle | ENCSR337VPD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,184,900 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Smooth muscle cell originated from H9, female embryo (5 days) embryonic 5 days;Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCFF404UWC-ENCFF069HNK_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Muscular | Embryonic | ENCODE Smooth muscle cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR337VPD] [Life stage: Embryonic] |
| NGEN025948 | ENCODE | Download | 7,281 | 409,557 | transcription start sites | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR410OSB | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 341,157 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=GM23338 originated from GM23248 adult 53 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCSR410OSB_rep2_1_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Stem Cell | Adult | ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult] |
| NGEN026010 | ENCODE | Download | 24,152 | 3,520,331 | transcription start sites | hg38 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR479BMI | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,233,672 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-N-DZ nuclear fraction child 2 years;Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR479BMI_rep1_1_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Child | ENCODE SK-N-DZ (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR479BMI] [Life stage: Child] |
| NGEN026040 | ENCODE | Download | 8,266 | 590,781 | transcription start sites | hg38 | Parietal lobe | Tissue | UBERON:0001872 | Brain | ENCSR000AGS | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 475,989 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR000AGS_rep1_1_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Embryonic | ENCODE Parietal lobe (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGS] [Life stage: Embryonic] |
| NGEN026051 | ENCODE | Download | 6,116 | 478,099 | transcription start sites | hg38 | Camera-type eye | Tissue | UBERON:0000019 | Eye | ENCSR000AHC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 311,765 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Camera-type eye tissue female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;System=sensory system;Submitted_track_name=ENCSR000AHC_rep1_1_rampage_peaks.bb;Experiment_date_released=09/03/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Sensory | Embryonic | ENCODE Camera-type eye (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AHC] [Life stage: Embryonic] |
| NGEN026073 | ENCODE | Download | 8,967 | 435,782 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR054RIR | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 504,503 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SK-MEL-5 adult 24 years;Lab=Thomas Gingeras, CSHL;System=integumental system;Submitted_track_name=ENCFF626KZX-ENCFF927YEO_rampage_peaks.bb;Experiment_date_released=11/20/2014;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR054RIR] [Life stage: Adult] |
| NGEN026077 | ENCODE | Download | 7,671 | 423,849 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR458JVO | 1 | 1_2 | Not applicable | RAMPAGE | bed tss_peak | 413,729 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCSR458JVO_rep1_2_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR458JVO] [Life stage: Adult] |
| NGEN026095 | ENCODE | Download | 6,639 | 328,552 | transcription start sites | hg19 | SJSA1 | Cell line | EFO:0002330 | Bone | ENCSR108KHH | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 382,272 | 10/07/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=SJSA1 adult 19 years;Lab=Thomas Gingeras, CSHL;System=skeletal system;Submitted_track_name=ENCFF179ANN-ENCFF398YOJ_rampage_peaks.bb;Experiment_date_released=04/14/2015;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Skeletal | Adult | ENCODE SJSA1 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR108KHH] [Life stage: Adult] |
| NGEN026160 | ENCODE | Download | 10,903 | 597,498 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR024MNP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 601,038 | 08/31/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Gastrocnemius medialis tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;System=musculature;Submitted_track_name=ENCSR024MNP_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR024MNP] [Life stage: Adult] |
| NGEN026211 | ENCODE | Download | 11,314 | 682,163 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR970OWZ | 1 | 1_2 | Not applicable | RAMPAGE | bed tss_peak | 640,600 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Adrenal gland tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=endocrine system;Submitted_track_name=ENCSR970OWZ_rep1_2_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=03/16/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR970OWZ] [Life stage: Adult] |
| NGEN026266 | ENCODE | Download | 9,397 | 475,447 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000068 | Heart | ENCSR419VNG | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 510,838 | 03/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Pericardium fibroblast NONE and female embryo (20 weeks);Lab=Thomas Gingeras, CSHL;System=circulatory system;Submitted_track_name=ENCSR419VNG_rep2_1_rampage_peaks.bb;previous_filer_cell_type=Fibroblast of pericardium;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 V24;premapping_cell_type=Fibroblast;tissue_of_origin=Pericardium;schema=BED6+5 | Cardiovascular | Embryonic | ENCODE Fibroblast (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR419VNG] [Life stage: Embryonic] |
| NGEN026268 | ENCODE | Download | 16,246 | 1,338,610 | transcription start sites | hg38 | Diencephalon | Tissue | UBERON:0001894 | Brain | ENCSR000AGL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,014,726 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;System=central nervous system;Submitted_track_name=ENCSR000AGL_rep1_1_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Nervous | Embryonic | ENCODE Diencephalon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGL] [Life stage: Embryonic] |
| NGEN026284 | ENCODE | Download | 69,067 | 11,177,960 | transcription start sites | hg19 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR688YRV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,949,494 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Transverse colon tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR688YRV_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR688YRV] [Life stage: Adult] |
| NGEN026305 | ENCODE | Download | 49,905 | 8,241,888 | transcription start sites | hg38 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR297QGC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,902,147 | 11/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Transverse colon tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;System=digestive system;Submitted_track_name=ENCSR297QGC_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=10/31/2016;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR297QGC] [Life stage: Adult] |
| NGEN026308 | ENCODE | Download | 17,716 | 1,634,927 | transcription start sites | hg19 | Prostate gland | Tissue | UBERON:0002367 | Male Reproductive | ENCSR671RMD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 907,383 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Prostate gland tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=reproductive system;Submitted_track_name=ENCSR671RMD_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/22/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Reproductive | Adult | ENCODE Prostate gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR671RMD] [Life stage: Adult] |
| NGEN026332 | ENCODE | Download | 26,847 | 3,290,111 | transcription start sites | hg19 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR627SPU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,335,643 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Spleen tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=digestive system,immune system;Submitted_track_name=ENCSR627SPU_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Lymphatic | Adult | ENCODE Spleen (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR627SPU] [Life stage: Adult] |
| NGEN026346 | ENCODE | Download | 9,475 | 803,003 | transcription start sites | hg38 | Urinary bladder | Tissue | UBERON:0001255 | Urinary | ENCSR000AGJ | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 524,399 | 03/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;System=excretory system;Submitted_track_name=ENCSR000AGJ_rep2_1_rampage_peaks.bb;Experiment_date_released=06/30/2014;File_analysis_title=ENCODE3 GRCh38 V24;schema=BED6+5 | Renal | Embryonic | ENCODE Urinary bladder (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGJ] [Life stage: Embryonic] |
| NGEN026377 | ENCODE | Download | 41,161 | 5,000,357 | transcription start sites | hg19 | Testis | Tissue | UBERON:0000473 | Male Reproductive | ENCSR866SRG | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,297,014 | 09/01/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Testis tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;System=reproductive system;Submitted_track_name=ENCSR866SRG_rep1_1_rampage_peaks.bb;Project=EN-TEx;Experiment_date_released=08/05/2016;File_analysis_title=ENCODE3 hg19 V19;schema=BED6+5 | Reproductive | Adult | ENCODE Testis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR866SRG] [Life stage: Adult] |
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