Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN024518 | ENCODE | Download | 13,752 | 861,533 | transcription start sites | hg19 | Muscularis mucosa | Tissue | UBERON:0004648 | Digestive | ENCSR669JBL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 790,081 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88448;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR669JBL_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=esophagus muscularis mucosa;ENCODE_cell_sli | Digestive | Adult | ENCODE Muscularis mucosa (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR669JBL] [Life stage: Adult] |
| NGEN024542 | ENCODE | Download | 8,293 | 587,217 | transcription start sites | hg38 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR007RIV | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 216,807 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-MEL-5 cytosolic fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 24 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87952;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCSR007RIV_rep1_1_ENCSR007RIV_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-MEL-5;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_s | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR007RIV] [Life stage: Adult] |
| NGEN024608 | ENCODE | Download | 10,128 | 735,678 | transcription start sites | hg19 | Liver | Tissue | UBERON:0002107 | Liver | ENCSR000AGP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 596,439 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens liver tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87929;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001YXQ-ENCFF001YXR_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine syste | Digestive | Embryonic | ENCODE Liver (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGP] [Life stage: Embryonic] |
| NGEN024626 | ENCODE | Download | 10,826 | 783,209 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR506WDZ | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 502,941 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-MEL-5 nuclear fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 24 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88319;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCFF105STS-ENCFF875TUA_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-MEL-5;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=in | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR506WDZ] [Life stage: Adult] |
| NGEN024627 | ENCODE | Download | 26,908 | 3,309,292 | transcription start sites | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR627SPU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,338,508 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens spleen tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88415;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-06-13;Submitted_track_name=ENCSR627SPU_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,i | Lymphatic | Adult | ENCODE Spleen (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR627SPU] [Life stage: Adult] |
| NGEN024643 | ENCODE | Download | 22,822 | 2,568,674 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR743LXD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,215,371 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens adrenal gland tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88503;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR743LXD_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=en | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR743LXD] [Life stage: Adult] |
| NGEN024657 | ENCODE | Download | 8,485 | 443,621 | transcription start sites | hg19 | Hepatocyte | In vitro differentiated cells | CL:0000182 | Liver | ENCSR985XGK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 426,701 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens hepatocyte originated from H9;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88688;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-12-17;Submitted_track_name=ENCFF189ARE-ENCFF773OYP_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hepatocyte;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims= | Digestive | Embryonic | ENCODE Hepatocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR985XGK] [Life stage: Embryonic] |
| NGEN024688 | ENCODE | Download | 5,912 | 409,457 | transcription start sites | hg38 | Liver | Tissue | UBERON:0002107 | Liver | ENCSR000AGP | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 156,177 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens liver tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87929;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGP_rep1_1_ENCSR000AGP_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=ex | Digestive | Embryonic | ENCODE Liver (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGP] [Life stage: Embryonic] |
| NGEN024713 | ENCODE | Download | 5,439 | 300,699 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR215UXA | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 143,645 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 0.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187087;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR215UXA_rep1_1_ENCSR215UXA_rep2_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte, | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR215UXA] [Life stage: Newborn] |
| NGEN024714 | ENCODE | Download | 10,831 | 551,652 | transcription start sites | hg38 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR054RIR | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 612,184 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-MEL-5;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 24 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87995;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR054RIR_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-MEL-5;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system;ENCO | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR054RIR] [Life stage: Adult] |
| NGEN024717 | ENCODE | Download | 8,508 | 403,080 | transcription start sites | hg38 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 441,375 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens Daoy;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88476;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCSR700NMZ_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Daoy;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_syno | Nervous | Child | ENCODE Daoy (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN024754 | ENCODE | Download | 4,755 | 310,556 | transcription start sites | hg38 | Thyroid gland | Tissue | UBERON:0002046 | Endocrine | ENCSR000AGY | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 126,091 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87938;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGY_rep1_1_ENCSR000AGY_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCO | Endocrine | Embryonic | ENCODE Thyroid gland (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGY] [Life stage: Embryonic] |
| NGEN024756 | ENCODE | Download | 9,879 | 462,524 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR773EZK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 511,615 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187908;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR773EZK_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;E | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR773EZK] [Life stage: Newborn] |
| NGEN024779 | ENCODE | Download | 7,225 | 498,968 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000068 | Heart | ENCSR419VNG | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 190,756 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens pericardium fibroblast NONE and female embryo (20 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88263;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCSR419VNG_rep1_1_ENCSR419VNG_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=pericardium fibroblast;ENCODE_cell_slims=fibro | Cardiovascular | Embryonic | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR419VNG] [Life stage: Embryonic] |
| NGEN024791 | ENCODE | Download | 7,837 | 375,417 | transcription start sites | hg19 | HT1080 | Cell line | EFO:0002059 | Connective Tissue | ENCSR348DYP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 428,965 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens HT1080;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 35 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88210;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-03-16,2014-06-30;Submitted_track_name=ENCSR348DYP_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HT1080;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=NR;ENCODE_biosample_term_syn | Skeletal | Adult | ENCODE HT1080 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR348DYP] [Life stage: Adult] |
| NGEN024803 | ENCODE | Download | 34,398 | 4,836,082 | transcription start sites | hg38 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR706VZW | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,548,298 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens tibial nerve tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88481;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR706VZW_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=tibial nerve;ENCODE_cell_slims=NR;ENCODE_system_slims=peri | Nervous | Adult | ENCODE Tibial nerve (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR706VZW] [Life stage: Adult] |
| NGEN024839 | ENCODE | Download | 10,822 | 611,316 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR007RIV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 650,893 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-MEL-5 cytosolic fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 24 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87952;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCFF498NER-ENCFF674FXJ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-MEL-5;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims= | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR007RIV] [Life stage: Adult] |
| NGEN024868 | ENCODE | Download | 13,881 | 991,410 | transcription start sites | hg19 | Skin | Tissue | UBERON:0004264 | Skin | ENCSR251EJL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 689,343 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens lower leg skin tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88141;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR251EJL_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=lower leg skin;ENCODE_cell_slims=NR;ENCODE_system_slims= | Integumentary | Adult | ENCODE Skin (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR251EJL] [Life stage: Adult] |
| NGEN024877 | ENCODE | Download | 24,800 | 3,268,169 | transcription start sites | hg19 | Lung | Tissue | UBERON:0008952 | Lung | ENCSR790PBX | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,326,320 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE92061;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-02-18;Submitted_track_name=ENCSR790PBX_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=upper lobe of left lung;ENCODE_cell_slims=NR;EN | Respiratory | Adult | ENCODE Lung (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR790PBX] [Life stage: Adult] |
| NGEN024892 | ENCODE | Download | 13,241 | 891,058 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR376IXU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 697,449 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens epithelial cell of alveolus of lung NONE and female embryo (21 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88230;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCSR376IXU_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=epithelial cell of alveolus of lung;ENCODE_cell_sl | Respiratory | Embryonic | ENCODE Epithelial cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR376IXU] [Life stage: Embryonic] |
| NGEN024904 | ENCODE | Download | 4,534 | 269,888 | transcription start sites | hg19 | SJSA1 | Cell line | EFO:0002330 | Bone | ENCSR108KHH | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 119,170 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SJSA1;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 19 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88036;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCFF179ANN-ENCFF398YOJ_ENCFF193RJG-ENCFF472YBU_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SJSA1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=skeletal system;ENC | Skeletal | Adult | ENCODE SJSA1 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR108KHH] [Life stage: Adult] |
| NGEN024915 | ENCODE | Download | 4,696 | 362,091 | transcription start sites | hg19 | Temporal lobe | Tissue | UBERON:0001871 | Brain | ENCSR000AGX | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 125,468 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87937;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001YXC-ENCFF001YXG_ENCFF001YYA-ENCFF001YYB_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=temporal lobe;ENCODE_cell_sli | Nervous | Embryonic | ENCODE Temporal lobe (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGX] [Life stage: Embryonic] |
| NGEN024952 | ENCODE | Download | 3,809 | 215,041 | transcription start sites | hg38 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 101,939 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens Daoy;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88476;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCSR700NMZ_rep1_1_ENCSR700NMZ_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Daoy;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_bi | Nervous | Child | ENCODE Daoy (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN024968 | ENCODE | Download | 12,961 | 731,774 | transcription start sites | hg38 | SJCRH30 | Cell line | EFO:0005722 | Skeletal Muscle | ENCSR540YVD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 707,270 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SJCRH30;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 17 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88346;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR540YVD_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SJCRH30;ENCODE_cell_slims=fibroblast,cancer cell,connective tissue cell;ENCODE_system_slims=musculat | Muscular | Child | ENCODE SJCRH30 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR540YVD] [Life stage: Child] |
| NGEN024995 | ENCODE | Download | 9,445 | 503,651 | transcription start sites | hg38 | GM23248 | Cell line | EFO:0005723 | Skin | ENCSR949PHV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 510,116 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens GM23248;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88666;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR949PHV_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23248;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=integumental system; | Integumentary | Adult | ENCODE GM23248 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR949PHV] [Life stage: Adult] |
| NGEN025016 | ENCODE | Download | 5,757 | 249,079 | transcription start sites | hg19 | A375 | Cell line | EFO:0002103 | Skin | ENCSR080XAB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 279,445 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens A375;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88011;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF012FJO-ENCFF505SJE_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A375;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_s | Integumentary | Adult | ENCODE A375 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR080XAB] [Life stage: Adult] |
| NGEN025021 | ENCODE | Download | 49,907 | 8,241,540 | transcription start sites | hg19 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR297QGC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,167,632 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE91641;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-08-04;Submitted_track_name=ENCSR297QGC_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_sl | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR297QGC] [Life stage: Adult] |
| NGEN025022 | ENCODE | Download | 3,299 | 164,656 | transcription start sites | hg38 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 86,427 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens RPMI7951;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 18 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88033;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCSR104PJD_rep1_1_ENCSR104PJD_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=RPMI7951;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integum | Integumentary | Adult | ENCODE RPMI-7951 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025058 | ENCODE | Download | 4,526 | 177,140 | transcription start sites | hg19 | HT-29 | Cell line | EFO:0001193 | Digestive | ENCSR295GUQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 210,544 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens HT-29;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88168;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF506EOD-ENCFF863QFW_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HT-29;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_b | Digestive | Adult | ENCODE HT-29 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR295GUQ] [Life stage: Adult] |
| NGEN025062 | ENCODE | Download | 9,300 | 669,525 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR458JVO | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 516,926 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88286;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-05-09,2016-03-07;Submitted_track_name=ENCSR458JVO_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR458JVO] [Life stage: Adult] |
| NGEN025063 | ENCODE | Download | 15,005 | 1,019,781 | transcription start sites | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR464UVO | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 830,488 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens heart left ventricle tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88289;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR464UVO_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_s | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR464UVO] [Life stage: Adult] |
| NGEN025100 | ENCODE | Download | 8,551 | 613,944 | transcription start sites | hg38 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 220,704 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88569;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18;Submitted_track_name=ENCSR824YLV_rep1_1_ENCSR824YLV_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H460;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=respiratory | Respiratory | Unknown | ENCODE NCI-H460 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025109 | ENCODE | Download | 8,388 | 367,043 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR115BCB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 401,803 | 2/8/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187041;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR115BCB_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;E | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR115BCB] [Life stage: Newborn] |
| NGEN025136 | ENCODE | Download | 4,536 | 176,138 | transcription start sites | hg38 | HT-29 | Cell line | EFO:0001193 | Digestive | ENCSR295GUQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 211,163 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens HT-29;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 44 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88168;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR295GUQ_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HT-29;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosam | Digestive | Adult | ENCODE HT-29 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR295GUQ] [Life stage: Adult] |
| NGEN025139 | ENCODE | Download | 16,366 | 991,126 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR930XIH | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 958,453 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88653;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR930XIH_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=en | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR930XIH] [Life stage: Adult] |
| NGEN025143 | ENCODE | Download | 11,334 | 648,486 | transcription start sites | hg19 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 674,523 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88569;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18;Submitted_track_name=ENCFF703QJX-ENCFF244ERL_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H460;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=respiratory system;ENCO | Respiratory | Unknown | ENCODE NCI-H460 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025153 | ENCODE | Download | 12,408 | 787,219 | transcription start sites | hg38 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR321NPB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 652,424 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens sigmoid colon tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88190;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR321NPB_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=sigmoid colon;ENCODE_cell_slims=NR;ENCODE_system_slims=di | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR321NPB] [Life stage: Adult] |
| NGEN025186 | ENCODE | Download | 11,265 | 628,560 | transcription start sites | hg38 | Neuronal progenitor cell | Stem cell | NTR:0000711 | Nervous | ENCSR602PHV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 572,300 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88392;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2015-01-08;Submitted_track_name=ENCSR602PHV_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural progenitor cell;ENCODE_cell_slims=progenitor cell;E | Nervous | Embryonic | ENCODE Neuronal progenitor cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR602PHV] [Life stage: Embryonic] |
| NGEN025210 | ENCODE | Download | 36,237 | 4,316,704 | transcription start sites | hg19 | Lung | Tissue | UBERON:0008952 | Lung | ENCSR004UBM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,592,744 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens upper lobe of left lung tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE91407;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-02-18;Submitted_track_name=ENCSR004UBM_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=upper lobe of left lung;ENCODE_cell_slims=NR;ENCO | Respiratory | Adult | ENCODE Lung (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR004UBM] [Life stage: Adult] |
| NGEN025218 | ENCODE | Download | 80,587 | 16,193,101 | transcription start sites | hg38 | Stomach | Tissue | UBERON:0000945 | Digestive | ENCSR792XFE | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 3,794,587 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens stomach tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88542;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR792XFE_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=stomach;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system | Digestive | Adult | ENCODE Stomach (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR792XFE] [Life stage: Adult] |
| NGEN025226 | ENCODE | Download | 24,657 | 2,223,104 | transcription start sites | hg38 | Prostate gland | Tissue | UBERON:0002367 | Male Reproductive | ENCSR655HUL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,171,370 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens prostate gland tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88438;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR655HUL_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=prostate gland;ENCODE_cell_slims=NR;ENCODE_system_slims=re | Reproductive | Adult | ENCODE Prostate gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR655HUL] [Life stage: Adult] |
| NGEN025238 | ENCODE | Download | 3,050 | 196,115 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000066 | Heart | ENCSR177YJM | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 82,173 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens cardiac ventricle fibroblast NONE and male adult (18 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88085;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCSR177YJM_rep1_1_ENCSR177YJM_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=cardiac ventricle fibroblast;ENCODE_cell_sl | Cardiovascular | Adult | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR177YJM] [Life stage: Adult] |
| NGEN025249 | ENCODE | Download | 8,085 | 596,207 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:2000071 | Breast | ENCSR663WYF | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 214,833 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens mammary microvascular endothelial cell female adult (26 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 26 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88445;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCSR663WYF_rep1_1_ENCSR663WYF_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mammary microvascular endoth | Reproductive | Adult | ENCODE Endothelial cell (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR663WYF] [Life stage: Adult] |
| NGEN025254 | ENCODE | Download | 7,294 | 412,292 | transcription start sites | hg19 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR410OSB | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 341,258 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88257;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF774ION-ENCFF017OQQ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCOD | Stem Cell | Adult | ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult] |
| NGEN025256 | ENCODE | Download | 7,309 | 483,687 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR376IXU | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 193,257 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens epithelial cell of alveolus of lung NONE and female embryo (21 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88230;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCSR376IXU_rep1_1_ENCSR376IXU_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=epithelial cell of alveolus of lu | Respiratory | Embryonic | ENCODE Epithelial cell (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR376IXU] [Life stage: Embryonic] |
| NGEN025281 | ENCODE | Download | 6,099 | 473,861 | transcription start sites | hg19 | Camera-type eye | Tissue | UBERON:0000019 | Eye | ENCSR000AHC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 310,255 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens camera-type eye tissue female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 24 weeks;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87942;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-09-03,2014-06-30;Submitted_track_name=ENCFF001YYS-ENCFF001YYT_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=camera-type eye;ENCODE_cell_slims=NR;ENCODE_system_ | Sensory | Embryonic | ENCODE Camera-type eye (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AHC] [Life stage: Embryonic] |
| NGEN025283 | ENCODE | Download | 9,779 | 524,129 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:2000071 | Breast | ENCSR663WYF | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 548,952 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens mammary microvascular endothelial cell female adult (26 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 26 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88445;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCSR663WYF_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mammary microvascular endothelial cell;ENCODE | Reproductive | Adult | ENCODE Endothelial cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR663WYF] [Life stage: Adult] |
| NGEN025356 | ENCODE | Download | 4,569 | 181,611 | transcription start sites | hg19 | Neuronal progenitor cell | Stem cell | NTR:0000711 | Nervous | ENCSR602PHV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 235,880 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88392;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2015-01-08;Submitted_track_name=ENCFF833RRH-ENCFF963HXO_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=neural progenitor cell;ENCODE_cell_slims=progenitor c | Nervous | Embryonic | ENCODE Neuronal progenitor cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR602PHV] [Life stage: Embryonic] |
| NGEN025384 | ENCODE | Download | 9,320 | 1,149,977 | transcription start sites | hg19 | Aorta | Tissue | UBERON:0001515 | Blood Vessel | ENCSR632GYF | 1 | 1_1 ,1_2 | Not applicable | RAMPAGE | bed idr_peak | 243,478 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens thoracic aorta tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88421;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-05-09,2016-03-07;Submitted_track_name=ENCSR632GYF_rep1_1_ENCSR632GYF_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thoracic aorta;ENCODE_cell_slims=NR;ENCOD | Cardiovascular | Adult | ENCODE Aorta (repl. 1) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR632GYF] [Life stage: Adult] |
| NGEN025431 | ENCODE | Download | 15,619 | 1,450,536 | transcription start sites | hg38 | Frontal cortex | Tissue | UBERON:0001870 | Brain | ENCSR000AGM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 892,473 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87926;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGM_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=frontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=c | Nervous | Embryonic | ENCODE Frontal cortex (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGM] [Life stage: Embryonic] |
| NGEN025444 | ENCODE | Download | 7,435 | 352,847 | transcription start sites | hg19 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR585QYX | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 366,304 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens PC-3;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 62 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88377;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20;Submitted_track_name=ENCFF110DHT-ENCFF144SWZ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=PC- | Reproductive | Adult | ENCODE PC-3 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR585QYX] [Life stage: Adult] |
| NGEN025467 | ENCODE | Download | 6,220 | 386,006 | transcription start sites | hg38 | Temporal lobe | Tissue | UBERON:0001871 | Brain | ENCSR000AGX | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 327,447 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87937;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGX_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=temporal lobe;ENCODE_cell_slims=NR;ENCODE_system_slims=c | Nervous | Embryonic | ENCODE Temporal lobe (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGX] [Life stage: Embryonic] |
| NGEN025468 | ENCODE | Download | 3,299 | 164,749 | transcription start sites | hg19 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 86,260 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens RPMI7951;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 18 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88033;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCFF356BLS-ENCFF550XGN_ENCFF826BKC-ENCFF367GKQ_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=RPMI7951;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_sli | Integumentary | Adult | ENCODE RPMI-7951 (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025470 | ENCODE | Download | 13,412 | 777,945 | transcription start sites | hg19 | Heart | Tissue | UBERON:0000948 | Heart | ENCSR724SZY | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 806,083 | 10/24/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens heart tissue male adult (34 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 34 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88495;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-09-03,2014-06-30;Submitted_track_name=ENCFF002BEL-ENCFF002BEM_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=heart;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;EN | Cardiovascular | Adult | ENCODE Heart (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR724SZY] [Life stage: Adult] |
| NGEN025495 | ENCODE | Download | 14,778 | 1,351,388 | transcription start sites | hg19 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR722NWC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 726,043 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens tibial nerve tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE92010;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-02-18;Submitted_track_name=ENCSR722NWC_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=tibial nerve;ENCODE_cell_slims=NR;ENCODE_system_slims=periph | Nervous | Adult | ENCODE Tibial nerve (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR722NWC] [Life stage: Adult] |
| NGEN025499 | ENCODE | Download | 6,485 | 394,925 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR469BXX | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 169,697 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187913;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR469BXX_rep1_1_ENCSR469BXX_rep2_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial ce | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR469BXX] [Life stage: Newborn] |
| NGEN025558 | ENCODE | Download | 8,481 | 400,730 | transcription start sites | hg19 | Daoy | Cell line | EFO:0005698 | Brain | ENCSR700NMZ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 440,281 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens Daoy;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88476;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCFF091MAK-ENCFF263SXU_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Daoy;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term | Nervous | Child | ENCODE Daoy (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR700NMZ] [Life stage: Child] |
| NGEN025562 | ENCODE | Download | 8,898 | 707,425 | transcription start sites | hg38 | Epithelium | Tissue | UBERON:0008367 | Breast | ENCSR909QWB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 423,085 | 11/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens breast epithelium tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE92155;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-02-18;Submitted_track_name=ENCSR909QWB_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=breast epithelium;ENCODE_cell_slims=NR;ENCODE_system_ | Reproductive | Adult | ENCODE Epithelium (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR909QWB] [Life stage: Adult] |
| NGEN025576 | ENCODE | Download | 5,753 | 250,614 | transcription start sites | hg38 | A375 | Cell line | EFO:0002103 | Skin | ENCSR080XAB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 279,197 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens A375;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88011;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR080XAB_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A375;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synony | Integumentary | Adult | ENCODE A375 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR080XAB] [Life stage: Adult] |
| NGEN025589 | ENCODE | Download | 41,952 | 7,725,848 | transcription start sites | hg38 | Stomach | Tissue | UBERON:0000945 | Digestive | ENCSR497BYB | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,913,299 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens stomach tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88314;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR497BYB_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=stomach;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive syst | Digestive | Adult | ENCODE Stomach (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR497BYB] [Life stage: Adult] |
| NGEN025597 | ENCODE | Download | 12,165 | 725,530 | transcription start sites | hg19 | Epithelial cell | Primary cell | CL:0002518 | Kidney | ENCSR100NLN | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 680,924 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens kidney epithelial cell male embryo (22 weeks) and male newborn;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88028;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCFF529ZBV-ENCFF884RAI_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=kidney epithelial cell;ENCODE_cell_slims=epithelial | Renal | Embryonic,Newborn | ENCODE Epithelial cell (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR100NLN] [Life stage: Embryonic,Newborn] |
| NGEN025614 | ENCODE | Download | 7,053 | 264,933 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR967IUK | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 338,121 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187880;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR967IUK_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENC | Integumentary | Newborn | ENCODE Keratinocyte (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR967IUK] [Life stage: Newborn] |
| NGEN025629 | ENCODE | Download | 6,990 | 289,982 | transcription start sites | hg19 | H4 | Cell line | EFO:0002184 | Brain | ENCSR850NOP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 339,291 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens H4;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88588;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-11-20;Submitted_track_name=ENCFF514CKB-ENCFF325OQL_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H4;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_ter | Nervous | Adult | ENCODE H4 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR850NOP] [Life stage: Adult] |
| NGEN025641 | ENCODE | Download | 84,453 | 15,401,860 | transcription start sites | hg38 | Vagina | Tissue | UBERON:0000996 | Female Reproductive | ENCSR219EAT | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 3,920,452 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens vagina tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88112;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR219EAT_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=vagina;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive sys | Reproductive | Adult | ENCODE Vagina (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR219EAT] [Life stage: Adult] |
| NGEN025643 | ENCODE | Download | 13,316 | 896,957 | transcription start sites | hg38 | Adipose | Tissue | UBERON:0002190 | Adipose | ENCSR419MZM | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 719,027 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens subcutaneous adipose tissue tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88262;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR419MZM_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=subcutaneous adipose tissue;ENCODE_cell_sli | Integumentary | Adult | ENCODE Adipose (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR419MZM] [Life stage: Adult] |
| NGEN025661 | ENCODE | Download | 10,461 | 717,377 | transcription start sites | hg19 | Spinal cord | Tissue | UBERON:0002240 | Nervous | ENCSR000AGV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 596,843 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87935;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001YXY-ENCFF001YXZ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spinal cord;ENCODE_cell_slims=NR;ENCODE_system_slims=ce | Nervous | Embryonic | ENCODE Spinal cord (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGV] [Life stage: Embryonic] |
| NGEN025662 | ENCODE | Download | 12,276 | 733,039 | transcription start sites | hg19 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR698NAQ | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 642,047 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens sigmoid colon tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88475;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR698NAQ_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=sigmoid colon;ENCODE_cell_slims=NR;ENCODE_system_slims=dige | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR698NAQ] [Life stage: Adult] |
| NGEN025663 | ENCODE | Download | 4,794 | 300,234 | transcription start sites | hg19 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR786DTS | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 128,697 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-N-DZ treated with dimethyl sulfoxide for 72 hours;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 2 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88539;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF434KKR-ENCFF334LMN_ENCFF616DFP-ENCFF211QWK_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-DZ;ENCODE_cell_slims=neu | Nervous | Child | ENCODE SK-N-DZ (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR786DTS] [Life stage: Child] |
| NGEN025704 | ENCODE | Download | 11,088 | 667,550 | transcription start sites | hg38 | NCI-H460 | Cell line | EFO:0003044 | Lung | ENCSR824YLV | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 666,724 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens NCI-H460 cytosolic fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88569;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18;Submitted_track_name=ENCSR824YLV_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H460;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=respiratory system;ENCODE_bi | Respiratory | Unknown | ENCODE NCI-H460 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR824YLV] [Life stage: Unknown] |
| NGEN025709 | ENCODE | Download | 4,892 | 173,572 | transcription start sites | hg19 | RPMI-7951 | Cell line | EFO:0005712 | Skin | ENCSR104PJD | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 221,394 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens RPMI7951;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 18 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88033;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCFF826BKC-ENCFF367GKQ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=RPMI7951;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system | Integumentary | Adult | ENCODE RPMI-7951 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR104PJD] [Life stage: Adult] |
| NGEN025769 | ENCODE | Download | 9,783 | 556,051 | transcription start sites | hg19 | Thyroid gland | Tissue | UBERON:0002046 | Endocrine | ENCSR000AGY | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 555,421 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87938;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001YXU-ENCFF001YXV_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thyroid gland;ENCODE_cell_slims=NR;ENCODE_system_sl | Endocrine | Embryonic | ENCODE Thyroid gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGY] [Life stage: Embryonic] |
| NGEN025776 | ENCODE | Download | 6,049 | 359,148 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000093 | Lung | ENCSR540CRO | 1, 2 | 1_1 ,2_1 | Not applicable | RAMPAGE | bed idr_peak | 157,369 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens bronchus fibroblast of lung;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88345;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-05-18;Submitted_track_name=ENCSR540CRO_rep1_1_ENCSR540CRO_rep1_1_rampage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=bronchus fibroblast of lung;ENCODE_cell_slims=fibroblast,connective tissue | Respiratory | Unknown | ENCODE Fibroblast (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR540CRO] [Life stage: Unknown] |
| NGEN025789 | ENCODE | Download | 8,783 | 377,032 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR773EZK | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 416,800 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187908;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR773EZK_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;E | Integumentary | Newborn | ENCODE Keratinocyte (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR773EZK] [Life stage: Newborn] |
| NGEN025790 | ENCODE | Download | 7,141 | 274,090 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:1001606 | Skin | ENCSR413FKS | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 328,077 | 2/22/2017 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3.5 days;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187477;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=ENCSR413FKS_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;E | Integumentary | Newborn | ENCODE Keratinocyte (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR413FKS] [Life stage: Newborn] |
| NGEN025843 | ENCODE | Download | 10,993 | 546,639 | transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000AER | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 603,851 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens K562;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE87922;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001RDX-ENCFF001RDR_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosamp | Cardiovascular | Adult | ENCODE K562 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AER] [Life stage: Adult] |
| NGEN025852 | ENCODE | Download | 8,136 | 461,082 | transcription start sites | hg19 | Skeletal muscle tissue | Tissue | UBERON:0001134 | Skeletal Muscle | ENCSR000AGT | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 400,542 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87933;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCFF001YVW-ENCFF001YVX_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle tissue;ENCODE_cell_slims=NR; | Muscular | Embryonic | ENCODE Skeletal muscle tissue (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGT] [Life stage: Embryonic] |
| NGEN025872 | ENCODE | Download | 985 | 29,040 | transcription start sites | hg38 | Myoblast | Primary cell | CL:0000515 | Skeletal Muscle | ENCSR765LMM | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 40,880 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens skeletal muscle myoblast;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88518;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCSR765LMM_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle myoblast;ENCODE_cell_slims=myoblast,embryonic cell;ENCODE_system_slims=musculat | Muscular | Unknown | ENCODE Myoblast (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR765LMM] [Life stage: Unknown] |
| NGEN025875 | ENCODE | Download | 12,856 | 716,301 | transcription start sites | hg19 | Epithelium | Tissue | UBERON:0006920 | Digestive | ENCSR930RDW | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 662,229 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88652;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR930RDW_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=esophagus squamous epithelium;ENCODE_cell | Digestive | Adult | ENCODE Epithelium (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR930RDW] [Life stage: Adult] |
| NGEN025893 | ENCODE | Download | 6,410 | 275,159 | transcription start sites | hg19 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR786DTS | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 310,143 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-N-DZ treated with dimethyl sulfoxide for 72 hours;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 2 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88539;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF616DFP-ENCFF211QWK_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-DZ;ENCODE_cell_slims=neuroblastoma cell,stem c | Nervous | Child | ENCODE SK-N-DZ (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR786DTS] [Life stage: Child] |
| NGEN025902 | ENCODE | Download | 13,453 | 1,065,193 | transcription start sites | hg38 | Pancreas | Tissue | UBERON:0001150 | Digestive | ENCSR366BLN | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 686,408 | 8/3/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88222;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR366BLN_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=body of pancreas;ENCODE_cell_slims=NR;ENCODE_system_sl | Digestive | Adult | ENCODE Pancreas (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR366BLN] [Life stage: Adult] |
| NGEN025912 | ENCODE | Download | 4,502 | 178,125 | transcription start sites | hg19 | HT1080 | Cell line | EFO:0002059 | Connective Tissue | ENCSR352ANU | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 208,783 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens HT1080 nuclear fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 35 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88213;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCFF278UNI-ENCFF145LPN_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HT1080;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=NR;ENC | Skeletal | Adult | ENCODE HT1080 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR352ANU] [Life stage: Adult] |
| NGEN025919 | ENCODE | Download | 13,241 | 997,220 | transcription start sites | hg19 | Gastroesophageal sphincter | Tissue | UBERON:0004550 | Digestive | ENCSR315BZA | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 651,662 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88187;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR315BZA_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastroesophageal sphincter;ENCODE_cell_slims=N | Digestive | Adult | ENCODE Gastroesophageal sphincter (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR315BZA] [Life stage: Adult] |
| NGEN025920 | ENCODE | Download | 22,288 | 2,354,632 | transcription start sites | hg19 | Smooth muscle cell | In vitro differentiated cells | CL:0000192 | Muscle | ENCSR337VPD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,184,900 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88201;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-12-17;Submitted_track_name=ENCFF404UWC-ENCFF069HNK_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=smooth muscle cell;ENCODE_cell_slims=smooth muscle cell;E | Muscular | Embryonic | ENCODE Smooth muscle cell (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR337VPD] [Life stage: Embryonic] |
| NGEN025948 | ENCODE | Download | 7,281 | 409,557 | transcription start sites | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR410OSB | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 341,157 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88257;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCSR410OSB_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_sys | Stem Cell | Adult | ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult] |
| NGEN026010 | ENCODE | Download | 24,152 | 3,520,331 | transcription start sites | hg38 | SK-N-DZ | Cell line | EFO:0005721 | Brain | ENCSR479BMI | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,233,672 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-N-DZ nuclear fraction;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 2 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88299;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-12-17;Submitted_track_name=ENCSR479BMI_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-DZ;ENCODE_cell_slims=neuroblastoma cell,stem cell,cancer cell,neural cell;ENCOD | Nervous | Child | ENCODE SK-N-DZ (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR479BMI] [Life stage: Child] |
| NGEN026040 | ENCODE | Download | 8,266 | 590,781 | transcription start sites | hg38 | Parietal lobe | Tissue | UBERON:0001872 | Brain | ENCSR000AGS | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 475,989 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87932;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGS_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=parietal lobe;ENCODE_cell_slims=NR;ENCODE_system_slims=cen | Nervous | Embryonic | ENCODE Parietal lobe (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGS] [Life stage: Embryonic] |
| NGEN026051 | ENCODE | Download | 6,116 | 478,099 | transcription start sites | hg38 | Camera-type eye | Tissue | UBERON:0000019 | Eye | ENCSR000AHC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 311,765 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens camera-type eye tissue female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 24 weeks;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87942;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-09-03,2014-06-30;Submitted_track_name=ENCSR000AHC_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=camera-type eye;ENCODE_cell_slims=NR;ENCODE_system_slims | Sensory | Embryonic | ENCODE Camera-type eye (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AHC] [Life stage: Embryonic] |
| NGEN026073 | ENCODE | Download | 8,967 | 435,782 | transcription start sites | hg19 | SK-MEL-5 | Cell line | EFO:0005720 | Skin | ENCSR054RIR | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 504,503 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SK-MEL-5;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 24 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87995;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,2014-06-30;Submitted_track_name=ENCFF626KZX-ENCFF927YEO_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-MEL-5;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system | Integumentary | Adult | ENCODE SK-MEL-5 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR054RIR] [Life stage: Adult] |
| NGEN026077 | ENCODE | Download | 7,671 | 423,849 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR458JVO | 1 | 1_2 | Not applicable | RAMPAGE | bed tss_peak | 413,729 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88286;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-05-09,2016-03-07;Submitted_track_name=ENCSR458JVO_rep1_2_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCODE | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR458JVO] [Life stage: Adult] |
| NGEN026095 | ENCODE | Download | 6,639 | 328,552 | transcription start sites | hg19 | SJSA1 | Cell line | EFO:0002330 | Bone | ENCSR108KHH | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 382,272 | 10/7/2015 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens SJSA1;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 19 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88036;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-04-14,2014-06-30;Submitted_track_name=ENCFF179ANN-ENCFF398YOJ_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SJSA1;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=skeletal system;ENCODE_biosample_term_syn | Skeletal | Adult | ENCODE SJSA1 (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR108KHH] [Life stage: Adult] |
| NGEN026160 | ENCODE | Download | 10,903 | 597,498 | transcription start sites | hg19 | Gastrocnemius medialis | Tissue | UBERON:0011907 | Skeletal Muscle | ENCSR024MNP | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 601,038 | 8/31/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87966;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-02-18;Submitted_track_name=ENCSR024MNP_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=gastrocnemius medialis;ENCODE_cell_slims=NR;ENCO | Muscular | Adult | ENCODE Gastrocnemius medialis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR024MNP] [Life stage: Adult] |
| NGEN026211 | ENCODE | Download | 11,314 | 682,163 | transcription start sites | hg19 | Adrenal gland | Tissue | UBERON:0002369 | Endocrine | ENCSR970OWZ | 1 | 1_2 | Not applicable | RAMPAGE | bed tss_peak | 640,600 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens adrenal gland tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88682;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-03-16,2016-03-07;Submitted_track_name=ENCSR970OWZ_rep1_2_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=adrenal gland;ENCODE_cell_slims=NR;ENCODE_system_slims=endo | Endocrine | Adult | ENCODE Adrenal gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR970OWZ] [Life stage: Adult] |
| NGEN026266 | ENCODE | Download | 9,397 | 475,447 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:2000068 | Heart | ENCSR419VNG | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 510,838 | 3/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens pericardium fibroblast NONE and female embryo (20 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88263;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2015-08-18,2015-06-17;Submitted_track_name=ENCSR419VNG_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=pericardium fibroblast;ENCODE_cell_slims=fibroblast,connective | Cardiovascular | Embryonic | ENCODE Fibroblast (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR419VNG] [Life stage: Embryonic] |
| NGEN026268 | ENCODE | Download | 16,246 | 1,338,610 | transcription start sites | hg38 | Diencephalon | Tissue | UBERON:0001894 | Brain | ENCSR000AGL | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,014,726 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87925;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30;Submitted_track_name=ENCSR000AGL_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=diencephalon;ENCODE_cell_slims=NR;ENCODE_system_slims=centr | Nervous | Embryonic | ENCODE Diencephalon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGL] [Life stage: Embryonic] |
| NGEN026284 | ENCODE | Download | 69,067 | 11,177,960 | transcription start sites | hg19 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR688YRV | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,949,494 | 10/28/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE91988;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-08-04;Submitted_track_name=ENCSR688YRV_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_slim | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR688YRV] [Life stage: Adult] |
| NGEN026305 | ENCODE | Download | 49,905 | 8,241,888 | transcription start sites | hg38 | Transverse colon | Tissue | UBERON:0001157 | Digestive | ENCSR297QGC | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,902,147 | 11/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE91641;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-10-31,2016-08-04;Submitted_track_name=ENCSR297QGC_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_sl | Digestive | Adult | ENCODE Transverse colon (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR297QGC] [Life stage: Adult] |
| NGEN026308 | ENCODE | Download | 17,716 | 1,634,927 | transcription start sites | hg19 | Prostate gland | Tissue | UBERON:0002367 | Male Reproductive | ENCSR671RMD | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 907,383 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88450;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-22,2016-08-04;Submitted_track_name=ENCSR671RMD_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=prostate gland;ENCODE_cell_slims=NR;ENCODE_system_slims=re | Reproductive | Adult | ENCODE Prostate gland (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR671RMD] [Life stage: Adult] |
| NGEN026332 | ENCODE | Download | 26,847 | 3,290,111 | transcription start sites | hg19 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR627SPU | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 1,335,643 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens spleen tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88415;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-06-13;Submitted_track_name=ENCSR627SPU_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,i | Lymphatic | Adult | ENCODE Spleen (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR627SPU] [Life stage: Adult] |
| NGEN026346 | ENCODE | Download | 9,475 | 803,003 | transcription start sites | hg38 | Urinary bladder | Tissue | UBERON:0001255 | Urinary | ENCSR000AGJ | 2 | 2_1 | Not applicable | RAMPAGE | bed tss_peak | 524,399 | 3/25/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87923;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-06-30,2014-07-07;Submitted_track_name=ENCSR000AGJ_rep2_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=urinary bladder;ENCODE_cell_slims=NR;ENCODE | Renal | Embryonic | ENCODE Urinary bladder (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR000AGJ] [Life stage: Embryonic] |
| NGEN026377 | ENCODE | Download | 41,161 | 5,000,357 | transcription start sites | hg19 | Testis | Tissue | UBERON:0000473 | Male Reproductive | ENCSR866SRG | 1 | 1_1 | Not applicable | RAMPAGE | bed tss_peak | 2,297,014 | 9/1/2016 | 07/16/2020 | TSS | RAMPAGE transcription start sites | Biosample_summary=Homo sapiens testis tissue male adult (54 years);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 54 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88606;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2016-08-05,2016-08-04;Submitted_track_name=ENCSR866SRG_rep1_1_rampage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=testis;ENCODE_cell_slims=NR;ENCODE_system_slims=reproductive syste | Reproductive | Adult | ENCODE Testis (repl. 1) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR866SRG] [Life stage: Adult] |
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