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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN000439 ENCODE Download 89,821 28,071,062 hotspots hg19 SK-MEL-5 Cell line EFO:0005720 Skin ENCSR000FEK 2 2_1 Not applicable DNase-seq bed broadPeak 1,498,304 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=SK-MEL-5;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000FEK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 hg19 Integumentary Unknown ENCODE SK-MEL-5 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FEK] [Orig: Biosample_summary=SK-MEL-5;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000FEK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000440 ENCODE Download 78,717 23,675,609 hotspots hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR000EOQ 2 2_1 Not applicable DNase-seq bed broadPeak 1,302,327 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOQ] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Um
NGEN000445 ENCODE Download 112,652 35,474,056 hotspots hg38 Endothelial cell Primary cell CL:2000016 Lung ENCSR000EOD 2 2_1 Not applicable DNase-seq bed broadPeak 1,875,705 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Lung miscrovascular Respiratory Unknown ENCODE Endothelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOD] [Orig: Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Lung miscrovascular] [Life stage: Unknown]
NGEN000463 ENCODE Download 104,545 15,681,359 peaks hg19 Epithelial cell Primary cell CL:0002231 Male Reproductive ENCSR000EPU 2 2_1 Not applicable DNase-seq bed narrowPeak 1,040,023 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Prostate Reproductive Unknown ENCODE Epithelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPU] [Orig: Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Prostate] [Life stage: Unknown]
NGEN000509 ENCODE Download 91,119 26,540,385 hotspots hg19 Epithelial cell Primary cell CL:0002327 Breast ENCSR000ENV 2 2_1 Not applicable DNase-seq bed broadPeak 1,513,034 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Mammary epithelial cell female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENV_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Mammary epithelial cell;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Mammary Reproductive Unknown ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENV] [Orig: Biosample_summary=Mammary epithelial cell female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENV_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Mammary epithelial cell;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Mammary] [Life stage: Unknown]
NGEN000511 ENCODE Download 490,583 73,577,482 peaks hg19 Myoblast Primary cell CL:0000515 Skeletal Muscle ENCSR000EOO 1 1_1 ,1_3 Not applicable DNase-seq bed narrowPeak 4,906,884 5/16/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Skeletal muscle myoblast;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EOO_rep1_1_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Myoblast;tissue_of_origin=Skeletal muscle Muscular Unknown ENCODE Myoblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOO] [Orig: Biosample_summary=Skeletal muscle myoblast;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EOO_rep1_1_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Myoblast;tissue_of_origin=Skeletal muscle] [Life stage: Unknown]
NGEN000512 ENCODE Download 76,078 21,654,813 hotspots hg19 WI38 Cell line EFO:0001260 Lung ENCSR000EQM 2 2_1 Not applicable DNase-seq bed broadPeak 1,246,544 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours;Lab=John Stamatoyannopoulos, UW;System=respiratory system;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR000EQM_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19 Respiratory Unknown ENCODE WI38 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQM] [Orig: Biosample_summary=WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours;Lab=John Stamatoyannopoulos, UW;System=respiratory system;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR000EQM_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000522 ENCODE Download 123,317 38,221,371 hotspots hg38 WERI-Rb-1 Cell line EFO:0005715 Eye ENCSR000EQL 1 1_1 Not applicable DNase-seq bed broadPeak 2,039,795 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EQL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38 Sensory Unknown ENCODE WERI-Rb-1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQL] [Orig: Biosample_summary=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EQL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000524 ENCODE Download 128,579 19,286,097 peaks hg38 Fibroblast Primary cell CL:0002555 Breast ENCSR000ENW 1 1_1 Not applicable DNase-seq bed narrowPeak 1,286,737 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENW_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of mammary gland;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Mammary gland Reproductive Unknown ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENW] [Orig: Biosample_summary=Fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000ENW_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of mammary gland;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Mammary gland] [Life stage: Unknown]
NGEN000545 ENCODE Download 94,323 33,012,441 hotspots hg38 NCI-H460 Cell line EFO:0003044 Lung ENCSR000FJH 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 1,584,357 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=NCI-H460;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000FJH_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 GRCh38 Respiratory Unknown ENCODE NCI-H460 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FJH] [Orig: Biosample_summary=NCI-H460;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000FJH_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000551 ENCODE Download 213,706 32,011,194 peaks hg38 Coronary artery Tissue UBERON:0001621 Blood Vessel ENCSR060HPL 1 1_1 Not applicable DNase-seq bed narrowPeak 2,039,578 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Coronary artery tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR060HPL_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/01/2017;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Adult ENCODE Coronary artery (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR060HPL] [Orig: Biosample_summary=Coronary artery tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR060HPL_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/01/2017;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN000571 ENCODE Download 224,567 124,405,799 hotspots hg38 Retina Tissue UBERON:0000966 Eye ENCSR621ENC 1 1_1 Not applicable DNase-seq bed broadPeak 3,566,563 5/6/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Retina tissue embryo (74 days) and embryo (85 days);Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR621ENC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38 Sensory Embryonic ENCODE Retina (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR621ENC] [Orig: Biosample_summary=Retina tissue embryo (74 days) and embryo (85 days);Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR621ENC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38] [Life stage: Embryonic]
NGEN000576 ENCODE Download 338,622 50,760,739 peaks hg19 Lung Tissue UBERON:0002048 Lung ENCSR582IPV 2 2_1 Not applicable DNase-seq bed narrowPeak 3,390,218 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Lung tissue embryo (80 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR582IPV_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 hg19 Respiratory Embryonic ENCODE Lung (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR582IPV] [Orig: Biosample_summary=Lung tissue embryo (80 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR582IPV_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN000577 ENCODE Download 122,351 64,238,873 hotspots hg19 T-helper 2 cell Primary cell CL:0000546 Immune ENCSR000EQG 2 2_1 Not applicable DNase-seq bed broadPeak 1,988,261 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=T-helper 2 cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQG_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 hg19 Lymphatic Unknown ENCODE T-helper 2 cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQG] [Orig: Biosample_summary=T-helper 2 cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQG_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000578 ENCODE Download 264,417 39,622,175 peaks hg38 PC-9 Cell line EFO:0002847 Lung ENCSR940NLN 2 2_1 Not applicable DNase-seq bed narrowPeak 2,655,388 5/6/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=PC-9;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR940NLN_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 Respiratory Unknown ENCODE PC-9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR940NLN] [Orig: Biosample_summary=PC-9;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR940NLN_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000583 ENCODE Download 47,560 9,781,209 hotspots hg38 H54 Cell line EFO:0002782 Brain ENCSR000EJA 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 752,572 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=H54;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EJA_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38 Nervous Unknown ENCODE H54 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EJA] [Orig: Biosample_summary=H54;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EJA_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000602 ENCODE Download 38,846 13,840,612 hotspots hg38 GM06990 Cell line EFO:0002783 Blood ENCSR000EMQ 2 2_1 Not applicable DNase-seq bed broadPeak 646,487 5/3/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/07/2011;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Unknown ENCODE GM06990 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMQ] [Orig: Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/07/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000603 ENCODE Download 263,184 39,451,201 peaks hg38 H9 Stem cell EFO:0003045 Embryo ENCSR275ICP 2 2_1 Not applicable DNase-seq bed narrowPeak 2,626,244 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=H9;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR275ICP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell Embryo Embryonic ENCODE H9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR275ICP] [Orig: Biosample_summary=H9;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR275ICP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN000604 ENCODE Download 114,507 17,174,655 peaks hg19 CD14+ monocyte Primary cell CL:0001054 Blood ENCSR000EPK 2 2_1 Not applicable DNase-seq bed narrowPeak 1,154,076 5/14/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=CD14-positive monocyte female;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EPK_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE CD14+ monocyte (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPK] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EPK_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000605 ENCODE Download 202,228 76,757,772 hotspots hg19 CD1c+ myeloid dendritic cell Primary cell CL:0002399 Blood ENCSR373BIX 1 1_1 Not applicable DNase-seq bed broadPeak 3,314,553 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=CD1c-positive myeloid dendritic cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR373BIX_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/11/2016;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE CD1c+ myeloid dendritic cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR373BIX] [Orig: Biosample_summary=CD1c-positive myeloid dendritic cell;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR373BIX_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/11/2016;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000609 ENCODE Download 58,293 8,743,236 peaks hg38 T-helper 2 cell Primary cell CL:0000546 Immune ENCSR000EQH 1 1_1 Not applicable DNase-seq bed narrowPeak 587,024 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=T-helper 2 cell female adult (26 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQH_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 GRCh38 Lymphatic Adult ENCODE T-helper 2 cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EQH] [Orig: Biosample_summary=T-helper 2 cell female adult (26 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQH_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN000615 ENCODE Download 57,473 22,437,164 hotspots hg19 T-helper 1 cell Primary cell CL:0000545 Immune ENCSR000EQE 1 1_1 Not applicable DNase-seq bed broadPeak 954,543 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=T-helper 1 cell male adult (33 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQE_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 hg19 Lymphatic Adult ENCODE T-helper 1 cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQE] [Orig: Biosample_summary=T-helper 1 cell male adult (33 years);Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EQE_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=07/23/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN000619 ENCODE Download 132,139 19,819,494 peaks hg38 GM04504 Cell line NTR:0000477 Skin ENCSR000EMP 1 1_1 Not applicable DNase-seq bed narrowPeak 1,324,448 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=GM04504;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMP_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 GRCh38 Integumentary Unknown ENCODE GM04504 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMP] [Orig: Biosample_summary=GM04504;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMP_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000627 ENCODE Download 139,839 20,974,494 peaks hg19 Endothelial cell Primary cell CL:2000010 Blood Vessel ENCSR000ENY 2 2_1 Not applicable DNase-seq bed narrowPeak 1,395,059 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Dermis blood vessel Cardiovascular Adult ENCODE Endothelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENY] [Orig: Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Dermis blood vessel] [Life stage: Adult]
NGEN000630 ENCODE Download 313,549 46,986,485 peaks hg19 Medulloblastoma Cell line EFO:0002939 Brain ENCSR000ELB 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 3,041,855 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 hg19 Nervous Unknown ENCODE Medulloblastoma (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ELB] [Orig: Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000647 ENCODE Download 248,305 96,691,625 hotspots hg19 NB4 Cell line EFO:0002798 Blood ENCSR000EPL 1 1_1 Not applicable DNase-seq bed broadPeak 4,019,429 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=NB4;Lab=John Stamatoyannopoulos, UW;System=skeletal system,immune system;Submitted_track_name=ENCSR000EPL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE NB4 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPL] [Orig: Biosample_summary=NB4;Lab=John Stamatoyannopoulos, UW;System=skeletal system,immune system;Submitted_track_name=ENCSR000EPL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000655 ENCODE Download 393,223 168,840,155 hotspots hg19 Islet precursor cell In vitro differentiated cells NTR:0001484 Digestive ENCSR224FOA 2 2_1 Not applicable DNase-seq bed broadPeak 6,250,247 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Islet precursor cell, female embryo (5 days);Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR224FOA_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=01/11/2018;File_analysis_title=ENCODE3 hg19 Digestive Embryonic ENCODE Islet precursor cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR224FOA] [Orig: Biosample_summary=Islet precursor cell, female embryo (5 days);Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR224FOA_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=01/11/2018;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN000659 ENCODE Download 95,097 14,263,435 peaks hg38 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR959ZXU 2 2_1 Not applicable DNase-seq bed narrowPeak 952,535 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR959ZXU_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38 Reproductive Unknown ENCODE HeLa-S3 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR959ZXU] [Orig: Biosample_summary=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR959ZXU_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/18/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000666 ENCODE Download 323,864 117,181,936 hotspots hg38 iPS-NIHi7 Induced pluripotent stem cell line EFO:0007953 iPSC ENCSR000EKK 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed broadPeak 5,127,731 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=iPS-NIHi7 originated from AG08395;Lab=Gregory Crawford, Duke;System=integumental system;Submitted_track_name=ENCSR000EKK_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38 Stem Cell Unknown ENCODE iPS-NIHi7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKK] [Orig: Biosample_summary=iPS-NIHi7 originated from AG08395;Lab=Gregory Crawford, Duke;System=integumental system;Submitted_track_name=ENCSR000EKK_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000684 ENCODE Download 101,228 28,882,183 hotspots hg19 NT2/D1 Cell line EFO:0005236 Male Reproductive ENCSR000EPS 1 1_1 Not applicable DNase-seq bed broadPeak 1,669,913 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=NT2/D1;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPS_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19 Reproductive Unknown ENCODE NT2/D1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPS] [Orig: Biosample_summary=NT2/D1;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPS_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN000690 ENCODE Download 104,578 31,528,120 hotspots hg19 Fibroblast Primary cell CL:0002550 Eye ENCSR000ENK 1 1_1 Not applicable DNase-seq bed broadPeak 1,743,483 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Conjunctiva Sensory Unknown ENCODE Fibroblast (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENK] [Orig: Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Conjunctiva] [Life stage: Unknown]
NGEN000694 ENCODE Download 158,273 23,730,712 peaks hg38 Endothelial cell Primary cell CL:1000892 Kidney ENCSR988YKR 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 1,573,891 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Kidney capillary endothelial cell female embryo (113 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system,excretory system;Submitted_track_name=ENCSR988YKR_rep1_1_rep1_2_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Kidney capillary Renal Embryonic ENCODE Endothelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR988YKR] [Orig: Biosample_summary=Kidney capillary endothelial cell female embryo (113 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system,excretory system;Submitted_track_name=ENCSR988YKR_rep1_1_rep1_2_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Kidney capillary] [Life stage: Embryonic]
NGEN000696 ENCODE Download 190,135 28,496,254 peaks hg38 Dedifferentiated mesenchymal stem cell Stem cell NTR:0005063 Connective Tissue ENCSR820WLP 2 2_1 Not applicable DNase-seq bed narrowPeak 1,904,006 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR820WLP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38;old_system_category=Placental;premapping_cell_type=Dedifferentiated mesenchymal stem cell;tissue_of_origin=Connective Tissue;old_tissue_category=Placenta;old_biosample_type=Stem cell;pre_origin_deriv_fix_system=Stem Cell;pre_origi Skeletal Embryonic ENCODE Dedifferentiated mesenchymal stem cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR820WLP] [Orig: Biosample_summary=Dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR820WLP_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38;old_system_category=Placental;premapping_cell_type=Dedifferentiated mesenchymal stem cell;tissue_of_origin=Conne
NGEN000711 ENCODE Download 137,563 20,604,212 peaks hg19 Frontal cortex Tissue UBERON:0001870 Brain ENCSR000EIY 2 2_1 Not applicable DNase-seq bed narrowPeak 1,334,966 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Frontal cortex tissue female adult (67 years) and female adult (80 years);Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EIY_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19 Nervous Adult ENCODE Frontal cortex (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIY] [Orig: Biosample_summary=Frontal cortex tissue female adult (67 years) and female adult (80 years);Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000EIY_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN000716 ENCODE Download 196,016 115,233,041 hotspots hg19 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR000EOQ 1 1_1 Not applicable DNase-seq bed broadPeak 3,217,004 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOQ] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=John Stamatoyannopoulos, UW;System=circulatory system,reproductive system;Submitted_track_name=ENCSR000EOQ_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbi
NGEN000724 ENCODE Download 36,988 5,541,645 peaks hg38 Hepatocyte Primary cell CL:0000182 Liver ENCSR000EJU 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 377,590 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Hepatocyte;Lab=Gregory Crawford, Duke;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000EJU_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38 Digestive Unknown ENCODE Hepatocyte (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJU] [Orig: Biosample_summary=Hepatocyte;Lab=Gregory Crawford, Duke;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCSR000EJU_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000733 ENCODE Download 244,531 36,670,413 peaks hg38 Epithelial cell Cell line NTR:0004520 Digestive ENCSR038XTK 1 1_1 Not applicable DNase-seq bed narrowPeak 2,485,090 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=HCEC 1CT;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR038XTK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Epithelial cell;tissue_of_origin=Colon;old_biosample_type=Cell line Digestive Unknown ENCODE Epithelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR038XTK] [Orig: Biosample_summary=HCEC 1CT;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR038XTK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Epithelial cell;tissue_of_origin=Colon;old_biosample_type=Cell line] [Life stage: Unknown]
NGEN000734 ENCODE Download 3 711 hotspots hg38 Medulloblastoma Cell line EFO:0002939 Brain ENCSR000ELB 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 141 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38 Nervous Unknown ENCODE Medulloblastoma (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELB] [Orig: Biosample_summary=D341Med;Lab=Gregory Crawford, Duke;System=central nervous system;Submitted_track_name=ENCSR000ELB_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000737 ENCODE Download 198,083 81,892,716 hotspots hg38 Hematopoietic multipotent progenitor cell In vitro differentiated cells CL:0000837 Blood ENCSR098PTC 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 3,247,244 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_2_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Adult ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_2_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN000743 ENCODE Download 238,287 120,301,177 hotspots hg38 Stomach Tissue UBERON:0000945 Digestive ENCSR095GWE 2 2_1 Not applicable DNase-seq bed broadPeak 3,825,388 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Stomach tissue male embryo (58 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR095GWE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 GRCh38 Digestive Embryonic ENCODE Stomach (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR095GWE] [Orig: Biosample_summary=Stomach tissue male embryo (58 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR095GWE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=09/22/2016;File_analysis_title=ENCODE3 GRCh38] [Life stage: Embryonic]
NGEN000748 ENCODE Download 262,614 39,386,719 peaks hg38 Endothelial cell Primary cell CL:2000016 Lung ENCSR000EOD 1 1_1 ,1_3 Not applicable DNase-seq bed narrowPeak 2,661,572 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep1_3_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Lung miscrovascular Respiratory Unknown ENCODE Endothelial cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOD] [Orig: Biosample_summary=Lung microvascular endothelial cell female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,respiratory system;Submitted_track_name=ENCSR000EOD_rep1_3_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Lung miscrovascular] [Life stage: Unknown]
NGEN000756 ENCODE Download 133,564 20,033,503 peaks hg38 LHCN-M2 Cell line EFO:0005714 Skeletal Muscle ENCSR000EPE 2 2_1 Not applicable DNase-seq bed narrowPeak 1,339,098 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=LHCN-M2;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EPE_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38 Muscular Unknown ENCODE LHCN-M2 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPE] [Orig: Biosample_summary=LHCN-M2;Lab=John Stamatoyannopoulos, UW;System=musculature;Submitted_track_name=ENCSR000EPE_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000762 ENCODE Download 221,326 33,140,667 peaks hg19 Vagina Tissue UBERON:0000996 Female Reproductive ENCSR437AYW 1 1_1 Not applicable DNase-seq bed narrowPeak 2,067,078 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Vagina tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR437AYW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/01/2017;File_analysis_title=ENCODE3 hg19 Reproductive Adult ENCODE Vagina (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR437AYW] [Orig: Biosample_summary=Vagina tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR437AYW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/01/2017;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN000774 ENCODE Download 146,522 21,976,129 peaks hg38 LNCaP clone FGC Cell line EFO:0005726 Male Reproductive ENCSR000EPF 2 2_1 Not applicable DNase-seq bed narrowPeak 1,458,014 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=LNCaP clone FGC;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPF_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38 Reproductive Unknown ENCODE LNCaP clone FGC (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPF] [Orig: Biosample_summary=LNCaP clone FGC;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPF_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/04/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000784 ENCODE Download 203,477 89,216,737 hotspots hg38 Kidney Tissue UBERON:0002113 Urinary ENCSR873ANE 2 2_1 Not applicable DNase-seq bed broadPeak 3,275,620 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38 Renal Embryonic ENCODE Kidney (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR873ANE] [Orig: Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38] [Life stage: Embryonic]
NGEN000788 ENCODE Download 75,755 11,356,229 peaks hg38 GM19240 Cell line EFO:0002790 Blood ENCSR000EJL 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 767,652 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=GM19240;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJL_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Unknown ENCODE GM19240 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJL] [Orig: Biosample_summary=GM19240;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJL_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000801 ENCODE Download 231,209 34,679,095 peaks hg38 Hematopoietic multipotent progenitor cell In vitro differentiated cells CL:0000837 Blood ENCSR845CFB 2 2_1 Not applicable DNase-seq bed narrowPeak 2,344,823 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR845CFB_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Adult ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR845CFB] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR845CFB_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh
NGEN000803 ENCODE Download 296,201 44,388,907 peaks hg38 AG08396 Cell line NTR:0000484 Lung ENCSR000EIW 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed narrowPeak 2,889,694 5/9/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38 Respiratory Unknown ENCODE AG08396 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIW] [Orig: Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000823 ENCODE Download 257,774 115,901,729 hotspots hg19 Kidney Tissue UBERON:0002113 Urinary ENCSR066WZJ 1 1_1 Not applicable DNase-seq bed broadPeak 4,163,505 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Kidney tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR066WZJ_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19 Renal Embryonic ENCODE Kidney (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR066WZJ] [Orig: Biosample_summary=Kidney tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR066WZJ_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN000827 ENCODE Download 95,650 28,984,611 hotspots hg38 GM12865 Cell line EFO:0005338 Blood ENCSR000EMS 2 2_1 Not applicable DNase-seq bed broadPeak 1,588,676 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=GM12865;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMS_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Unknown ENCODE GM12865 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMS] [Orig: Biosample_summary=GM12865;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMS_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000832 ENCODE Download 233,856 35,071,566 peaks hg38 Ammon's horn Tissue UBERON:0001954 Brain ENCSR584LUZ 1 1_1 Not applicable DNase-seq bed narrowPeak 2,375,319 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Ammon's horn tissue male adult (84 years);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR584LUZ_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38 Nervous Adult ENCODE Ammon's horn (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR584LUZ] [Orig: Biosample_summary=Ammon's horn tissue male adult (84 years);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR584LUZ_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN000840 ENCODE Download 140,821 45,758,636 hotspots hg19 Left ventricle Tissue UBERON:0002084 Heart ENCSR946DXB 2 2_1 Not applicable DNase-seq bed broadPeak 2,292,301 5/16/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Heart left ventricle tissue female embryo (101 days) and female embryo (103 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR501FWC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=01/29/2018;File_analysis_title=ENCODE3 hg19 Cardiovascular Embryonic ENCODE Left ventricle (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR946DXB] [Orig: Biosample_summary=Heart left ventricle tissue female embryo (101 days) and female embryo (103 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR501FWC_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=01/29/2018;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN000841 ENCODE Download 104,714 15,706,727 peaks hg38 Epithelial cell Primary cell CL:0002231 Male Reproductive ENCSR000EPU 2 2_1 Not applicable DNase-seq bed narrowPeak 1,042,443 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Epithelial cell;tissue_of_origin=Prostate Reproductive Unknown ENCODE Epithelial cell (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPU] [Orig: Biosample_summary=Epithelial cell of prostate;Lab=John Stamatoyannopoulos, UW;System=reproductive system;Submitted_track_name=ENCSR000EPU_rep2_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=10/19/2011;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Epithelial cell;tissue_of_origin=Prostate] [Life stage: Unknown]
NGEN000849 ENCODE Download 339,110 127,630,367 hotspots hg19 Epithelial cell Primary cell CL:0000706 Brain ENCSR000ENL 1 1_1 Not applicable DNase-seq bed broadPeak 5,557,497 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Choroid plexus epithelial cell;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Choroid plexus Nervous Unknown ENCODE Epithelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENL] [Orig: Biosample_summary=Choroid plexus epithelial cell;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENL_rep1_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Choroid plexus] [Li
NGEN000870 ENCODE Download 35,878 15,037,275 hotspots hg38 Caco-2 Cell line EFO:0001099 Digestive ENCSR000EMI 1 1_1 Not applicable DNase-seq bed broadPeak 593,328 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Caco-2;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000EMI_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Digestive Unknown ENCODE Caco-2 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EMI] [Orig: Biosample_summary=Caco-2;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000EMI_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000883 ENCODE Download 82,289 26,662,267 hotspots hg38 GM19238 Cell line EFO:0002788 Blood ENCSR000EJJ 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 1,334,041 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=GM19238;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJJ_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Unknown ENCODE GM19238 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EJJ] [Orig: Biosample_summary=GM19238;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EJJ_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000904 ENCODE Download 58,516 19,973,935 hotspots hg38 Panc1 Cell line EFO:0002713 Digestive ENCSR000EPT 1 1_1 Not applicable DNase-seq bed broadPeak 966,001 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Digestive Unknown ENCODE Panc1 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPT] [Orig: Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000906 ENCODE Download 140,294 62,007,554 hotspots hg19 Sigmoid colon Tissue UBERON:0001159 Digestive ENCSR462XTM 1 1_1 Not applicable DNase-seq bed broadPeak 2,194,611 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Sigmoid colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR462XTM_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 hg19 Digestive Adult ENCODE Sigmoid colon (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR462XTM] [Orig: Biosample_summary=Sigmoid colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR462XTM_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN000908 ENCODE Download 197,206 81,692,192 hotspots hg19 Hematopoietic multipotent progenitor cell In vitro differentiated cells CL:0000837 Blood ENCSR098PTC 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 3,233,091 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 hg19 Cardiovascular Adult ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN000931 ENCODE Download 241,775 88,147,622 hotspots hg38 T47D Cell line EFO:0001247 Female Reproductive ENCSR000EQB 1 1_1 ,1_3 Not applicable DNase-seq bed broadPeak 3,952,717 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=T47D;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EQB_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 GRCh38 Reproductive Unknown ENCODE T47D (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EQB] [Orig: Biosample_summary=T47D;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EQB_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000960 ENCODE Download 88,670 40,451,624 hotspots hg38 Hematopoietic multipotent progenitor cell In vitro differentiated cells CL:0000837 Blood ENCSR937UWI 1 1_1 Not applicable DNase-seq bed broadPeak 1,444,931 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR937UWI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=11/05/2015;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Adult ENCODE Hematopoietic multipotent progenitor cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR937UWI] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR937UWI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=11/05/2015;File_analysis_title=ENC
NGEN000967 ENCODE Download 160,595 54,708,913 hotspots hg38 M059J Cell line EFO:0005697 Brain ENCSR000EPG 2 2_1 Not applicable DNase-seq bed broadPeak 2,657,111 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=M059J;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPG_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38 Nervous Unknown ENCODE M059J (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPG] [Orig: Biosample_summary=M059J;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPG_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN000979 ENCODE Download 124,599 18,688,439 peaks hg38 Fibroblast Primary cell CL:0002547 Blood Vessel ENCSR000EMC 1 1_1 Not applicable DNase-seq bed narrowPeak 1,247,098 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Fibroblast of the aortic adventitia female;Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR000EMC_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Aortic adventitia Cardiovascular Unknown ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMC] [Orig: Biosample_summary=Fibroblast of the aortic adventitia female;Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR000EMC_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of the aortic adventitia;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Aortic adventitia] [Life stage: Unknow
NGEN000984 ENCODE Download 519,541 77,856,971 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR000EKN 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed narrowPeak 4,892,653 5/16/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=K562 treated with 1 ?M vorinostat for 72 hours;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKN_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EKN] [Orig: Biosample_summary=K562 treated with 1 ?M vorinostat for 72 hours;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKN_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001002 ENCODE Download 88,295 13,243,493 peaks hg38 AG04449 Cell line NTR:0000478 Skin ENCSR000ELX 1 1_1 Not applicable DNase-seq bed narrowPeak 883,545 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000ELX_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Integumentary Unknown ENCODE AG04449 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ELX] [Orig: Biosample_summary=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000ELX_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001015 ENCODE Download 204,974 30,707,528 peaks hg19 B cell Tissue UBERON:0010754 Blood ENCSR000EIZ 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 1,981,472 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Germinal center tissue;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EIZ_rep1_2_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19;premapping_cell_type=B cell;tissue_of_origin=Germinal center Cardiovascular Unknown ENCODE B cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EIZ] [Orig: Biosample_summary=Germinal center tissue;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EIZ_rep1_2_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19;premapping_cell_type=B cell;tissue_of_origin=Germinal center] [Life stage: Unknown]
NGEN001016 ENCODE Download 188,072 28,175,478 peaks hg19 Transverse colon Tissue UBERON:0001157 Digestive ENCSR760QZM 1 1_1 Not applicable DNase-seq bed narrowPeak 1,804,509 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Transverse colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR760QZM_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/02/2017;File_analysis_title=ENCODE3 hg19 Digestive Adult ENCODE Transverse colon (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR760QZM] [Orig: Biosample_summary=Transverse colon tissue female adult (51 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR760QZM_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Project=EN-TEx;Experiment_date_released=10/02/2017;File_analysis_title=ENCODE3 hg19] [Life stage: Adult]
NGEN001040 ENCODE Download 436,787 65,512,994 peaks hg38 GM23248 Cell line EFO:0005723 Skin ENCSR217TAW 1 1_1 Not applicable DNase-seq bed narrowPeak 4,361,054 5/3/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=GM23248;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR217TAW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=06/17/2015;File_analysis_title=ENCODE3 GRCh38 Integumentary Unknown ENCODE GM23248 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR217TAW] [Orig: Biosample_summary=GM23248;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR217TAW_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=06/17/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001042 ENCODE Download 100,002 14,995,052 peaks hg38 H9 Stem cell EFO:0003045 Embryo ENCSR000EJP 1 1_1 ,1_2 Not applicable DNase-seq bed narrowPeak 1,000,776 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=H9;Lab=Gregory Crawford, Duke;Submitted_track_name=ENCSR000EJP_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell Embryo Embryonic ENCODE H9 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EJP] [Orig: Biosample_summary=H9;Lab=Gregory Crawford, Duke;Submitted_track_name=ENCSR000EJP_rep1_1_rep1_2_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN001046 ENCODE Download 107,406 50,216,363 hotspots hg19 HK-2 Cell line NTR:0000487 Urinary ENCSR634YVQ 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 1,783,494 5/7/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=HK-2;Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR634YVQ_rep1_1_rep1_2_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 hg19 Renal Unknown ENCODE HK-2 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR634YVQ] [Orig: Biosample_summary=HK-2;Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR634YVQ_rep1_1_rep1_2_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001047 ENCODE Download 42,078 6,309,164 peaks hg19 GM06990 Cell line EFO:0002783 Blood ENCSR000EMQ 2 2_1 Not applicable DNase-seq bed narrowPeak 426,021 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/07/2011;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE GM06990 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMQ] [Orig: Biosample_summary=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR000EMQ_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/07/2011;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001067 ENCODE Download 221,957 97,774,915 hotspots hg38 Endothelial cell Primary cell CL:2000010 Blood Vessel ENCSR000ENY 1 1_1 Not applicable DNase-seq bed broadPeak 3,640,200 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Dermis blood vessel Cardiovascular Adult ENCODE Endothelial cell (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENY] [Orig: Biosample_summary=Dermis blood vessel endothelial cell female adult;Lab=John Stamatoyannopoulos, UW;System=circulatory system,integumental system;Submitted_track_name=ENCSR000ENY_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/14/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Dermis blood vessel] [Life stage: Adult]
NGEN001095 ENCODE Download 243,721 89,818,294 hotspots hg38 AG08396 Cell line NTR:0000484 Lung ENCSR000EIW 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed broadPeak 3,892,208 5/9/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38 Respiratory Unknown ENCODE AG08396 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EIW] [Orig: Biosample_summary=AG08396;Lab=Gregory Crawford, Duke;System=respiratory system;Submitted_track_name=ENCSR000EIW_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001100 ENCODE Download 81,334 29,081,774 hotspots hg19 Brain Tissue UBERON:0000955 Brain ENCSR475VQD 2 2_1 ,2_2 Not applicable DNase-seq bed broadPeak 1,332,291 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Brain tissue male embryo (72 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR475VQD_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 hg19 Nervous Embryonic ENCODE Brain (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR475VQD] [Orig: Biosample_summary=Brain tissue male embryo (72 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR475VQD_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN001104 ENCODE Download 365,201 54,774,952 peaks hg38 Fibroblast Primary cell CL:1001608 Skin ENCSR000EPP 1 1_1 Not applicable DNase-seq bed narrowPeak 3,651,638 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Foreskin fibroblast male newborn;Lab=John Stamatoyannopoulos, UW;System=reproductive system,integumental system;Submitted_track_name=ENCSR000EPP_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Foreskin fibroblast;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Foreskin Integumentary Newborn ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EPP] [Orig: Biosample_summary=Foreskin fibroblast male newborn;Lab=John Stamatoyannopoulos, UW;System=reproductive system,integumental system;Submitted_track_name=ENCSR000EPP_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Foreskin fibroblast;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Foreskin] [Life stage: Newborn]
NGEN001105 ENCODE Download 270,418 126,423,462 hotspots hg19 Muscularis mucosa Tissue UBERON:0004648 Digestive ENCSR944JCE 1 1_1 Not applicable DNase-seq bed broadPeak 4,235,854 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Esophagus muscularis mucosa tissue male adult (37 years);Lab=John Stamatoyannopoulos, UW;System=musculature,digestive system;Submitted_track_name=ENCSR944JCE_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Muscularis mucosa;tissue_of_origin=Esophagus Digestive Adult ENCODE Muscularis mucosa (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR944JCE] [Orig: Biosample_summary=Esophagus muscularis mucosa tissue male adult (37 years);Lab=John Stamatoyannopoulos, UW;System=musculature,digestive system;Submitted_track_name=ENCSR944JCE_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Muscularis mucosa;tissue_of_origin=Esophagus] [Life stage: Adult]
NGEN001123 ENCODE Download 166,210 58,696,272 hotspots hg38 Hematopoietic multipotent progenitor cell In vitro differentiated cells CL:0000837 Blood ENCSR098PTC 2 2_1 Not applicable DNase-seq bed broadPeak 2,747,148 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Adult ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR098PTC] [Orig: Biosample_summary=Hematopoietic multipotent progenitor cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR098PTC_rep2_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/31/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN001126 ENCODE Download 136,307 41,390,692 hotspots hg38 MCF-7 Cell line EFO:0001203 Breast ENCSR000EPH 1 1_1 Not applicable DNase-seq bed broadPeak 2,248,004 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=MCF-7;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EPH_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38 Reproductive Unknown ENCODE MCF-7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPH] [Orig: Biosample_summary=MCF-7;Lab=John Stamatoyannopoulos, UW;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EPH_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=06/12/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001141 ENCODE Download 205,562 30,817,077 peaks hg38 Kidney Tissue UBERON:0002113 Urinary ENCSR873ANE 1 1_1 Not applicable DNase-seq bed narrowPeak 2,079,908 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38 Renal Embryonic ENCODE Kidney (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR873ANE] [Orig: Biosample_summary=Kidney tissue female embryo (76 days) and male embryo (76 days);Lab=John Stamatoyannopoulos, UW;System=excretory system;Submitted_track_name=ENCSR873ANE_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/13/2017;File_analysis_title=ENCODE3 GRCh38] [Life stage: Embryonic]
NGEN001151 ENCODE Download 118,854 35,575,817 hotspots hg38 Fibroblast Primary cell CL:0002550 Eye ENCSR000ENK 2 2_1 Not applicable DNase-seq bed broadPeak 1,979,206 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Conjunctiva Sensory Unknown ENCODE Fibroblast (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ENK] [Orig: Biosample_summary=Fibroblast of the conjunctiva;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000ENK_rep2_1_se_bwa_biorep_filtered_hotspots.bb;previous_filer_cell_type=Fibroblast of the conjunctiva;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38;premapping_cell_type=Fibroblast;tissue_of_origin=Conjunctiva] [Life stage: Unknown]
NGEN001191 ENCODE Download 128,832 40,440,748 hotspots hg38 Left cardiac atrium Tissue UBERON:0002079 Heart ENCSR412NMI 1 1_1 Not applicable DNase-seq bed broadPeak 2,100,148 5/6/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Left cardiac atrium tissue female embryo (101 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR412NMI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=10/23/2017;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Embryonic ENCODE Left cardiac atrium (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR412NMI] [Orig: Biosample_summary=Left cardiac atrium tissue female embryo (101 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR412NMI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=10/23/2017;File_analysis_title=ENCODE3 GRCh38] [Life stage: Embryonic]
NGEN001203 ENCODE Download 116,015 37,160,486 hotspots hg38 CD14+ monocyte Primary cell CL:0001054 Blood ENCSR000ELE 1 1_1 Not applicable DNase-seq bed broadPeak 1,852,069 5/9/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=CD14-positive monocyte female;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000ELE_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 GRCh38 Cardiovascular Unknown ENCODE CD14+ monocyte (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELE] [Orig: Biosample_summary=CD14-positive monocyte female;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000ELE_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001209 ENCODE Download 69,404 10,405,669 peaks hg19 Smooth muscle cell Primary cell CL:0002590 Brain ENCSR000ENG 1 1_1 Not applicable DNase-seq bed narrowPeak 693,857 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Smooth muscle cell of the brain vasculature female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENG_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Smooth muscle cell of the brain vasculature;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Smooth muscle cell;tissue_of_origin=Brain vascular Nervous Unknown ENCODE Smooth muscle cell (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENG] [Orig: Biosample_summary=Smooth muscle cell of the brain vasculature female;Lab=John Stamatoyannopoulos, UW;System=circulatory system,central nervous system;Submitted_track_name=ENCSR000ENG_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Smooth muscle cell of the brain vasculature;Experiment_date_released=03/06/2012;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Smooth muscle cell;ti
NGEN001215 ENCODE Download 262,214 107,863,954 hotspots hg38 HT1080 Cell line EFO:0002059 Connective Tissue ENCSR000FDI 2 2_1 ,2_2 Not applicable DNase-seq bed broadPeak 4,280,684 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=HT1080;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000FDI_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/31/2015;File_analysis_title=ENCODE3 GRCh38 Skeletal Unknown ENCODE HT1080 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000FDI] [Orig: Biosample_summary=HT1080;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000FDI_rep2_1_rep2_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/31/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001218 ENCODE Download 240,830 107,066,271 hotspots hg19 Heart Tissue UBERON:0000948 Heart ENCSR804RSI 1 1_1 Not applicable DNase-seq bed broadPeak 3,874,487 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Heart tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR804RSI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19 Cardiovascular Embryonic ENCODE Heart (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR804RSI] [Orig: Biosample_summary=Heart tissue embryo (80 days);Lab=John Stamatoyannopoulos, UW;System=circulatory system;Submitted_track_name=ENCSR804RSI_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2016;File_analysis_title=ENCODE3 hg19] [Life stage: Embryonic]
NGEN001228 ENCODE Download 171,010 75,557,178 hotspots hg19 NAMALWA Cell line EFO:0002246 Immune ENCSR301OGM 1 1_1 ,1_3 Not applicable DNase-seq bed broadPeak 2,773,517 5/9/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=NAMALWA treated with Sendai virus for 2 hours;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR301OGM_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 hg19 Lymphatic Unknown ENCODE NAMALWA (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR301OGM] [Orig: Biosample_summary=NAMALWA treated with Sendai virus for 2 hours;Lab=John Stamatoyannopoulos, UW;System=immune system;Submitted_track_name=ENCSR301OGM_rep1_1_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=05/09/2018;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001232 ENCODE Download 814,465 246,179,214 hotspots hg38 Osteoblast Primary cell CL:0000062 Bone ENCSR000ELJ 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed broadPeak 12,643,415 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Osteoblast;Lab=Gregory Crawford, Duke;System=skeletal system;Submitted_track_name=ENCSR000ELJ_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38 Skeletal Unknown ENCODE Osteoblast (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000ELJ] [Orig: Biosample_summary=Osteoblast;Lab=Gregory Crawford, Duke;System=skeletal system;Submitted_track_name=ENCSR000ELJ_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001236 ENCODE Download 90,358 24,140,339 hotspots hg19 Epithelial cell Primary cell CL:0002304 Eye ENCSR000EOF 2 2_1 Not applicable DNase-seq bed broadPeak 1,485,993 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000EOF_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Non-pigmented ciliary Sensory Unknown ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EOF] [Orig: Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=John Stamatoyannopoulos, UW;Submitted_track_name=ENCSR000EOF_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Non-pigmented ciliary] [Life stage: Unknown]
NGEN001252 ENCODE Download 275,921 41,383,645 peaks hg38 NCI-H226 Cell line EFO:0002285 Lung ENCSR265TEK 1 1_1 Not applicable DNase-seq bed narrowPeak 2,761,747 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=NCI-H226;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR265TEK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=11/05/2015;File_analysis_title=ENCODE3 GRCh38 Respiratory Unknown ENCODE NCI-H226 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR265TEK] [Orig: Biosample_summary=NCI-H226;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR265TEK_rep1_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=11/05/2015;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001260 ENCODE Download 114,731 32,977,345 hotspots hg19 Epithelial cell Primary cell CL:0002586 Eye ENCSR000EON 2 2_1 Not applicable DNase-seq bed broadPeak 1,888,403 5/14/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EON_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment Sensory Unknown ENCODE Epithelial cell (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EON] [Orig: Biosample_summary=Retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;Submitted_track_name=ENCSR000EON_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment] [Life stage: Unknown]
NGEN001263 ENCODE Download 191,944 28,784,161 peaks hg38 H9 Stem cell EFO:0003045 Embryo ENCSR964WHY 2 2_1 Not applicable DNase-seq bed narrowPeak 1,924,665 5/4/18 08/21/24 Called peaks DNase-seq peaks Biosample_summary=H9, stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1b phase;Lab=John Stamatoyannopoulos, UW;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR964WHY_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/01/2016;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell Embryo Embryonic ENCODE H9 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR964WHY] [Orig: Biosample_summary=H9, stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1b phase;Lab=John Stamatoyannopoulos, UW;GM=[Method- stable transfection|Category- insertion];Submitted_track_name=ENCSR964WHY_rep2_1_pe_bwa_biorep_filtered_peaks.bb;Experiment_date_released=08/01/2016;File_analysis_title=ENCODE3 GRCh38;old_system_category=Stem Cell;premapping_cell_type=H9;tissue_of_
NGEN001271 ENCODE Download 271,821 102,978,897 hotspots hg38 Astrocyte Primary cell CL:0000127 Brain ENCSR000EPM 1 1_1 Not applicable DNase-seq bed broadPeak 4,475,804 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Astrocyte;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPM_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Nervous Unknown ENCODE Astrocyte (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPM] [Orig: Biosample_summary=Astrocyte;Lab=John Stamatoyannopoulos, UW;System=central nervous system;Submitted_track_name=ENCSR000EPM_rep1_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001283 ENCODE Download 223,125 107,828,466 hotspots hg38 Sigmoid colon Tissue UBERON:0001159 Digestive ENCSR391YAV 1 1_1 Not applicable DNase-seq bed broadPeak 3,491,558 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Sigmoid colon tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR391YAV_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 GRCh38 Digestive Adult ENCODE Sigmoid colon (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR391YAV] [Orig: Biosample_summary=Sigmoid colon tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR391YAV_rep1_1_pe_bwa_biorep_filtered_hotspots.bb;Project=EN-TEx;Experiment_date_released=11/01/2017;File_analysis_title=ENCODE3 GRCh38] [Life stage: Adult]
NGEN001284 ENCODE Download 12,048 2,253,426 hotspots hg38 MCF-7 Cell line EFO:0001203 Breast ENCSR000EKY 1 1_1 ,1_2 Not applicable DNase-seq bed broadPeak 197,331 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=MCF-7 treated with 10 mM lactate for 24 hours;Lab=Gregory Crawford, Duke;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EKY_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38 Reproductive Unknown ENCODE MCF-7 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKY] [Orig: Biosample_summary=MCF-7 treated with 10 mM lactate for 24 hours;Lab=Gregory Crawford, Duke;System=integumental system,exocrine system;Submitted_track_name=ENCSR000EKY_rep1_1_rep1_2_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=03/28/2012;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001286 ENCODE Download 313,727 136,248,967 hotspots hg19 K562 Cell line EFO:0002067 Blood ENCSR000EKP 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed broadPeak 4,968,980 5/16/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=K562 G2 phase;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKP_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EKP] [Orig: Biosample_summary=K562 G2 phase;Lab=Gregory Crawford, Duke;System=immune system;Submitted_track_name=ENCSR000EKP_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=08/28/2012;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001287 ENCODE Download 332,264 49,782,344 peaks hg19 LNCaP clone FGC Cell line EFO:0005726 Male Reproductive ENCSR000EKT 1 1_1 ,1_2,1_3 Not applicable DNase-seq bed narrowPeak 3,195,944 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=LNCaP clone FGC;Lab=Gregory Crawford, Duke;System=reproductive system;Submitted_track_name=ENCSR000EKT_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 hg19 Reproductive Unknown ENCODE LNCaP clone FGC (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EKT] [Orig: Biosample_summary=LNCaP clone FGC;Lab=Gregory Crawford, Duke;System=reproductive system;Submitted_track_name=ENCSR000EKT_rep1_1_rep1_2_rep1_3_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=04/19/2011;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001300 ENCODE Download 48,573 16,742,631 hotspots hg38 Panc1 Cell line EFO:0002713 Digestive ENCSR000EPT 2 2_1 Not applicable DNase-seq bed broadPeak 798,544 5/4/18 02/19/19 Called peaks DNase-seq hotspots Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38 Digestive Unknown ENCODE Panc1 (repl. 2) DNase-seq hotspots (broadPeak) [Experiment: ENCSR000EPT] [Orig: Biosample_summary=Panc1;Lab=John Stamatoyannopoulos, UW;System=endocrine system;Submitted_track_name=ENCSR000EPT_rep2_1_se_bwa_biorep_filtered_hotspots.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 GRCh38] [Life stage: Unknown]
NGEN001303 ENCODE Download 88,372 13,254,799 peaks hg19 HCT116 Cell line EFO:0002824 Digestive ENCSR000ENM 2 2_1 Not applicable DNase-seq bed narrowPeak 884,450 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000ENM_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19 Digestive Unknown ENCODE HCT116 (repl. 2) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000ENM] [Orig: Biosample_summary=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;Submitted_track_name=ENCSR000ENM_rep2_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001313 ENCODE Download 141,661 21,248,470 peaks hg19 AG10803 Cell line NTR:0000481 Skin ENCSR000EMB 1 1_1 Not applicable DNase-seq bed narrowPeak 1,414,702 5/7/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMB_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19 Integumentary Unknown ENCODE AG10803 (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EMB] [Orig: Biosample_summary=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;Submitted_track_name=ENCSR000EMB_rep1_1_se_bwa_biorep_filtered_peaks.bb;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19] [Life stage: Unknown]
NGEN001318 ENCODE Download 295,657 44,341,664 peaks hg19 Fibroblast Primary cell CL:0002553 Lung ENCSR000EOJ 1 1_1 Not applicable DNase-seq bed narrowPeak 2,962,349 5/14/18 08/22/24 Called peaks DNase-seq peaks Biosample_summary=Fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000EOJ_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of lung;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Lung;old_tissue_category=Lung Respiratory Unknown ENCODE Fibroblast (repl. 1) DNase-seq peaks (narrowPeak) [Experiment: ENCSR000EOJ] [Orig: Biosample_summary=Fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;Submitted_track_name=ENCSR000EOJ_rep1_1_se_bwa_biorep_filtered_peaks.bb;previous_filer_cell_type=Fibroblast of lung;Experiment_date_released=12/16/2010;File_analysis_title=ENCODE3 hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Lung;old_tissue_category=Lung] [Life stage: Unknown]
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