Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN000020 | ENCODE | Download | 63,867 | 106,253,000,000 | long range chromatin interactions | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BZW | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 2,040,457 | 9/24/11 | 02/19/19 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE HeLa-S3 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZW] [Orig: Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN000026 | ENCODE | Download | 4,318 | 1,736,183,127 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 1 | 1_1 | ESR1 | ChIA-PET | bed bed12 | 164,541 | 9/24/11 | 02/19/19 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN000027 | ENCODE | Download | 5,498 | 2,320,670,350 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 2 | 2_1 | ESR1 | ChIA-PET | bed bed12 | 208,287 | 9/24/11 | 02/19/19 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF-7 (repl. 2) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN000028 | ENCODE | Download | 2,433 | 1,698,620,256 | long range chromatin interactions | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BZZ | 3 | 3_1 | ESR1 | ChIA-PET | bed bed12 | 92,117 | 9/24/11 | 02/19/19 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF-7 (repl. 3) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN000033 | ENCODE | Download | 11,832 | 15,721,374,097 | long range chromatin interactions | hg19 | NB4 | Cell line | EFO:0002798 | Blood | ENCSR000CAB | 1 | 1_1 | POLR2A | ChIA-PET | bed bed12 | 392,479 | 9/24/11 | 02/19/19 | Chromatin Interactions | ChIA-PET protein long range chromatin interactions | Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE NB4 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAB] [Orig: Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN036892 | ENCODE | Download | 51,241 | 44,543,252 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | NTR:0000666 | Blood | ENCSR217TFN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 782,707 | 7/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR217TFN] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_releas |
| NGEN036893 | ENCODE | Download | 48,188 | 41,613,025 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR154MAJ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 764,111 | 7/20/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab |
| NGEN036894 | ENCODE | Download | 28,343 | 36,611,297 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR789ZIJ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 444,933 | 10/15/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/18/2020;File_analysis_title=Lab custom GRCh38 | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR789ZIJ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/18/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child] |
| NGEN036895 | ENCODE | Download | 34,492 | 25,195,847 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR676KCF | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 525,496 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Renal | Unknown | ENCODE HEK293T (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036896 | ENCODE | Download | 43,339 | 27,876,258 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR093CTT | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 672,569 | 7/15/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life |
| NGEN036897 | ENCODE | Download | 49,416 | 44,776,439 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 783,787 | 7/14/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036898 | ENCODE | Download | 29,381 | 23,937,348 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR880DSH | 3 | 3_1 | POLR2A | ChIA-PET | bed broadPeak | 442,126 | 2/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE K562 (repl. 3) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036899 | ENCODE | Download | 66,968 | 53,256,388 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR291RCO | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 1,045,590 | 7/21/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Exp |
| NGEN036900 | ENCODE | Download | 42,940 | 38,689,183 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 659,740 | 7/14/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036901 | ENCODE | Download | 73,116 | 63,122,252 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR763OCG | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,092,805 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Na |
| NGEN036902 | ENCODE | Download | 60,133 | 58,106,153 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR569TBN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 941,213 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR569TBN] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036903 | ENCODE | Download | 24,649 | 13,888,556 | peaks | hg38 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR095SXC | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 389,923 | 8/31/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell | Embryo | Embryonic | ENCODE H1-hESC (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic] |
| NGEN036904 | ENCODE | Download | 65,672 | 55,264,394 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR314TNQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 985,700 | 7/16/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Lif |
| NGEN036905 | ENCODE | Download | 40,061 | 29,287,763 | peaks | hg38 | CD8+ T cell | Primary cell | CL:0000625 | Blood | ENCSR180GEY | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 627,644 | 7/23/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036906 | ENCODE | Download | 73,830 | 65,665,853 | peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR114QCL | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,115,296 | 7/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114QCL] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Expe |
| NGEN036907 | ENCODE | Download | 63,643 | 49,563,216 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR550JJT | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 965,016 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experi |
| NGEN036908 | ENCODE | Download | 123,479 | 107,897,263 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR278IZK | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 1,942,593 | 3/31/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Adult | ENCODE HCT116 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036909 | ENCODE | Download | 64,394 | 61,068,290 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | NTR:0000504 | Blood | ENCSR041UPG | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 958,843 | 7/27/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR041UPG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab |
| NGEN036910 | ENCODE | Download | 22,163 | 12,491,598 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR962FFY | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 337,828 | 7/16/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released |
| NGEN036911 | ENCODE | Download | 46,302 | 33,139,011 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | CL:0000906 | Blood | ENCSR408MRB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 729,499 | 7/23/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR408MRB] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life |
| NGEN036912 | ENCODE | Download | 25,082 | 14,323,145 | peaks | hg38 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR095SXC | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 403,624 | 8/31/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell | Embryo | Embryonic | ENCODE H1-hESC (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic] |
| NGEN036913 | ENCODE | Download | 103,156 | 78,619,964 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR035PVZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 1,549,264 | 4/1/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Adult | ENCODE HCT116 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036914 | ENCODE | Download | 68,425 | 60,673,045 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | CL:0000909 | Blood | ENCSR149TQU | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,011,443 | 7/26/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR149TQU] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036915 | ENCODE | Download | 43,425 | 28,175,621 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR905HWW | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 630,237 | 8/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036916 | ENCODE | Download | 55,562 | 46,289,006 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR905HWW | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 814,487 | 8/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036917 | ENCODE | Download | 28,451 | 28,036,631 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR597AKG | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 473,877 | 10/16/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE K562 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036918 | ENCODE | Download | 50,295 | 35,766,014 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 768,621 | 7/14/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036919 | ENCODE | Download | 64,128 | 54,351,018 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR314TNQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 941,486 | 7/16/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Lif |
| NGEN036920 | ENCODE | Download | 54,636 | 38,638,646 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | NTR:0000666 | Blood | ENCSR531UMR | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 863,779 | 7/25/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR531UMR] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released |
| NGEN036921 | ENCODE | Download | 36,719 | 35,099,632 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR411IVB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 593,837 | 10/10/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Child] |
| NGEN036922 | ENCODE | Download | 65,073 | 56,625,638 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR402NAQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 997,511 | 7/18/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR402NAQ] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab c |
| NGEN036923 | ENCODE | Download | 49,793 | 45,801,642 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 3 | 3_1 | CTCF | ChIA-PET | bed broadPeak | 820,002 | 6/29/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 3) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage |
| NGEN036924 | ENCODE | Download | 47,567 | 42,998,985 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 764,764 | 3/23/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage |
| NGEN036925 | ENCODE | Download | 31,520 | 26,602,453 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR773XVD | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 483,337 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 | Renal | Unknown | ENCODE HEK293T (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036926 | ENCODE | Download | 60,163 | 46,391,683 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR733XLQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 870,080 | 7/16/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_releas |
| NGEN036927 | ENCODE | Download | 26,768 | 19,280,861 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR403ZYJ | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 416,404 | 10/20/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Reproductive | Adult | ENCODE MCF 10A (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036928 | ENCODE | Download | 46,168 | 33,743,325 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR962FFY | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 688,297 | 7/16/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released |
| NGEN036929 | ENCODE | Download | 28,828 | 27,846,208 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR597AKG | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 482,755 | 10/16/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE K562 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036930 | ENCODE | Download | 18,969 | 12,780,419 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR911ZMB | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 305,298 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Respiratory | Adult | ENCODE A549 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036931 | ENCODE | Download | 34,617 | 28,035,679 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR080OMN | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 498,804 | 3/23/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life sta |
| NGEN036932 | ENCODE | Download | 55,607 | 42,924,100 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR106INW | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 853,653 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036933 | ENCODE | Download | 58,692 | 48,924,469 | peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | NTR:0000669 | Blood | ENCSR114KEO | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 834,255 | 7/27/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114KEO] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cel |
| NGEN036934 | ENCODE | Download | 32,662 | 27,466,426 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR138NSW | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 495,907 | 1/12/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38 | Respiratory | Adult | ENCODE A549 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036935 | ENCODE | Download | 58,446 | 44,937,475 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | NTR:0000663 | Blood | ENCSR733XLQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 850,802 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_releas |
| NGEN036936 | ENCODE | Download | 28,585 | 21,685,354 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR403ZYJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 454,496 | 10/20/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Reproductive | Adult | ENCODE MCF 10A (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036937 | ENCODE | Download | 24,683 | 17,215,728 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR404FPI | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 410,960 | 6/29/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage |
| NGEN036938 | ENCODE | Download | 70,144 | 66,531,073 | peaks | hg38 | Naive thymus-derived CD8+, alpha-beta T cell | Primary cell | CL:0000900 | Blood | ENCSR064OTE | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,055,720 | 7/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR064OTE] [Orig: Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036939 | ENCODE | Download | 48,527 | 48,808,330 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR857MYZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 748,750 | 12/17/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38 | Digestive | Child | ENCODE HepG2 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child] |
| NGEN036940 | ENCODE | Download | 54,365 | 40,357,463 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR550JJT | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 836,748 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experi |
| NGEN036941 | ENCODE | Download | 50,785 | 41,533,436 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR446MTI | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 735,447 | 7/18/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;E |
| NGEN036942 | ENCODE | Download | 34,139 | 24,274,761 | peaks | hg38 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR782EKZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 486,107 | 8/31/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell | Embryo | Embryonic | ENCODE H1-hESC (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic] |
| NGEN036943 | ENCODE | Download | 72,052 | 66,092,291 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR278IZK | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 1,128,267 | 3/31/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Adult | ENCODE HCT116 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036944 | ENCODE | Download | 46,772 | 32,234,121 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR731OFF | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 661,466 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab cus |
| NGEN036945 | ENCODE | Download | 44,788 | 33,552,986 | peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | NTR:0000669 | Blood | ENCSR378IUJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 705,644 | 7/27/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR378IUJ] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Exp |
| NGEN036946 | ENCODE | Download | 33,389 | 25,239,846 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | CL:0000909 | Blood | ENCSR187PXW | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 529,430 | 7/26/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR187PXW] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036947 | ENCODE | Download | 22,766 | 15,907,228 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 368,780 | 7/13/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036948 | ENCODE | Download | 33,822 | 26,894,403 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR763OCG | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 504,333 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Na |
| NGEN036949 | ENCODE | Download | 24,144 | 20,761,867 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR411IVB | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 387,598 | 10/15/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Child | ENCODE HepG2 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Child] |
| NGEN036950 | ENCODE | Download | 29,801 | 20,009,261 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR184YZV | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 473,169 | 12/31/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036951 | ENCODE | Download | 60,917 | 48,578,015 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR154MAJ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 951,109 | 7/20/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab |
| NGEN036952 | ENCODE | Download | 55,494 | 47,880,739 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000499 | Blood | ENCSR877ZRR | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 849,932 | 7/20/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR877ZRR] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=La |
| NGEN036953 | ENCODE | Download | 27,926 | 25,246,855 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR138NSW | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 421,144 | 1/12/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38 | Respiratory | Adult | ENCODE A549 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036954 | ENCODE | Download | 45,615 | 33,716,960 | peaks | hg38 | CD8+ alpha-beta T cell | Primary cell | CL:0000906 | Blood | ENCSR982KEM | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 689,224 | 7/24/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR982KEM] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Lif |
| NGEN036955 | ENCODE | Download | 31,049 | 20,569,097 | peaks | hg38 | CD8+ T cell | Primary cell | CL:0000625 | Blood | ENCSR180GEY | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 482,965 | 7/23/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036956 | ENCODE | Download | 22,600 | 15,650,012 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR345UIQ | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 362,709 | 7/14/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036957 | ENCODE | Download | 32,240 | 25,060,934 | peaks | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR080OMN | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 469,515 | 3/23/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life sta |
| NGEN036958 | ENCODE | Download | 51,429 | 46,244,534 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000624 | Blood | ENCSR448ZLA | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 815,933 | 7/14/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036959 | ENCODE | Download | 59,706 | 43,399,705 | peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR120LMS | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 890,781 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR120LMS] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naiv |
| NGEN036960 | ENCODE | Download | 54,970 | 42,256,844 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000498 | Blood | ENCSR106INW | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 862,530 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036961 | ENCODE | Download | 28,828 | 19,810,962 | peaks | hg38 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR782EKZ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 427,189 | 8/31/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell | Embryo | Embryonic | ENCODE H1-hESC (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic] |
| NGEN036962 | ENCODE | Download | 66,383 | 58,593,350 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000664 | Blood | ENCSR446MTI | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,017,037 | 7/19/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Expe |
| NGEN036963 | ENCODE | Download | 60,310 | 54,109,552 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR159PXF | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 942,739 | 7/21/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR159PXF] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;E |
| NGEN036964 | ENCODE | Download | 59,341 | 51,874,539 | peaks | hg38 | CD4+ alpha-beta memory T cell | Primary cell | NTR:0000665 | Blood | ENCSR291RCO | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 937,815 | 7/21/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Exp |
| NGEN036965 | ENCODE | Download | 102,798 | 63,058,596 | peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR035PVZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 1,508,972 | 4/1/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 | Digestive | Adult | ENCODE HCT116 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036966 | ENCODE | Download | 46,963 | 51,048,001 | peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR857MYZ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 730,278 | 10/16/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38 | Digestive | Child | ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child] |
| NGEN036967 | ENCODE | Download | 30,274 | 23,746,147 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR499JGQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 467,110 | 10/20/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 | Reproductive | Adult | ENCODE MCF 10A (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036968 | ENCODE | Download | 34,532 | 29,271,887 | peaks | hg38 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR499JGQ | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 535,629 | 10/20/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 | Reproductive | Adult | ENCODE MCF 10A (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036969 | ENCODE | Download | 52,712 | 39,380,390 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR731OFF | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 811,376 | 7/17/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab cus |
| NGEN036970 | ENCODE | Download | 32,545 | 30,115,089 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR773XVD | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 499,934 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 | Renal | Unknown | ENCODE HEK293T (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036971 | ENCODE | Download | 31,503 | 26,014,302 | peaks | hg38 | CD8+ alpha-beta memory cell | Primary cell | NTR:0000504 | Blood | ENCSR697ZHG | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 494,912 | 7/27/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR697ZHG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab cu |
| NGEN036972 | ENCODE | Download | 18,082 | 11,932,192 | peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR911ZMB | 1 | 1_1 | CTCF | ChIA-PET | bed broadPeak | 280,574 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Respiratory | Adult | ENCODE A549 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036973 | ENCODE | Download | 40,986 | 29,857,334 | peaks | hg38 | CD4+ alpha-beta T cell | Primary cell | CL:0000896 | Blood | ENCSR093CTT | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 639,925 | 7/15/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life |
| NGEN036974 | ENCODE | Download | 31,686 | 23,098,719 | peaks | hg38 | HEK293T | Cell line | EFO:0001184 | Kidney | ENCSR676KCF | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 483,977 | 10/21/20 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Renal | Unknown | ENCODE HEK293T (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036975 | ENCODE | Download | 36,390 | 27,947,066 | peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR184YZV | 2 | 2_1 | CTCF | ChIA-PET | bed broadPeak | 535,221 | 8/26/21 | 11/07/22 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036976 | ENCODE | Download | 14,083 | 8,375,078 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR880DSH | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 213,872 | 10/16/20 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE K562 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036977 | ENCODE | Download | 28,283 | 22,923,833 | peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR880DSH | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 416,866 | 2/25/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0011V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE K562 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0011V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036978 | ENCODE | Download | 33,159 | 26,810,936 | peaks | hg38 | CD8+ T cell | Primary cell | CL:0000625 | Blood | ENCSR185VQH | 1 | 1_1 | POLR2A | ChIA-PET | bed broadPeak | 517,872 | 7/23/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0066H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD8+ T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR185VQH] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0066H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult] |
| NGEN036979 | ENCODE | Download | 40,553 | 26,778,552 | peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR402NAQ | 2 | 2_1 | POLR2A | ChIA-PET | bed broadPeak | 554,112 | 7/18/21 | 11/07/22 | Called peaks | ChIA-PET protein peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0096_96V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR402NAQ] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0096_96V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=La |
| NGEN036980 | ENCODE | Download | 383,714 | 161,679,621 | peaks | hg38 | HEK293 | Cell line | EFO:0001182 | Kidney | ENCSR934CYB | 2 | 2_1 | POLR2A | ChIA-PET | bed narrowPeak | 9,641,450 | 10/9/20 | 08/22/24 | Called peaks | ChIA-PET protein peaks | Biosample_summary=HEK293;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0087V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 | Renal | Unknown | ENCODE HEK293 (repl. 2) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR934CYB] [Orig: Biosample_summary=HEK293;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0087V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036981 | ENCODE | Download | 569,730 | 224,283,686 | peaks | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR514HBO | 2 | 2_1 | CTCF | ChIA-PET | bed narrowPeak | 13,459,245 | 10/8/20 | 08/22/24 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=LHS0003H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Nervous | Unknown | ENCODE SK-N-SH (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR514HBO] [Orig: Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=LHS0003H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036982 | ENCODE | Download | 394,237 | 128,926,832 | peaks | hg38 | BJ | Cell line | EFO:0002779 | Connective Tissue | ENCSR956IXE | 1 | 1_1 | POLR2A | ChIA-PET | bed narrowPeak | 10,176,713 | 9/22/21 | 08/22/24 | Called peaks | ChIA-PET protein peaks | Biosample_summary=BJ;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=LHB0010.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/23/2021;File_analysis_title=Lab custom GRCh38 | Skeletal | Unknown | ENCODE BJ (repl. 1) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR956IXE] [Orig: Biosample_summary=BJ;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=LHB0010.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/23/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036983 | ENCODE | Download | 266,095 | 116,336,830 | peaks | hg38 | AG04450 | Cell line | EFO:0006270 | Lung | ENCSR514BNX | 2 | 2_1 | POLR2A | ChIA-PET | bed narrowPeak | 6,958,717 | 10/10/20 | 08/22/24 | Called peaks | ChIA-PET protein peaks | Biosample_summary=AG04450;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0017V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=02/23/2021;File_analysis_title=Lab custom GRCh38 | Respiratory | Unknown | ENCODE AG04450 (repl. 2) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR514BNX] [Orig: Biosample_summary=AG04450;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0017V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=02/23/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036984 | ENCODE | Download | 533,453 | 212,743,354 | peaks | hg38 | Common myeloid progenitor cell | Primary cell | CL:0001059 | Blood | ENCSR421NGZ | 1 | 1_1 | CTCF | ChIA-PET | bed narrowPeak | 13,368,719 | 7/29/21 | 08/22/24 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=Common myeloid progenitor, CD34-positive;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHHSC0001H.no_input_all_peaks.maxscore1000.narrowPeak.bb;previous_filer_cell_type=Common myeloid progenitor, CD34-positive;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 | Cardiovascular | Unknown | ENCODE Common myeloid progenitor cell (repl. 1) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR421NGZ] [Orig: Biosample_summary=Common myeloid progenitor, CD34-positive;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHHSC0001H.no_input_all_peaks.maxscore1000.narrowPeak.bb;previous_filer_cell_type=Common myeloid progenitor, CD34-positive;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036985 | ENCODE | Download | 440,366 | 190,496,509 | peaks | hg38 | AG04449 | Cell line | CLO:0034837 | Skin | ENCSR580MNR | 2 | 2_1 | CTCF | ChIA-PET | bed narrowPeak | 11,182,061 | 10/9/20 | 08/22/24 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=AG04449;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=LHA0011H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 | Integumentary | Unknown | ENCODE AG04449 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR580MNR] [Orig: Biosample_summary=AG04449;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=LHA0011H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
| NGEN036986 | ENCODE | Download | 663,548 | 252,096,681 | peaks | hg38 | WTC11 | Cell line | EFO:0009747 | Skin | ENCSR779QAB | 2 | 2_1 | CTCF | ChIA-PET | bed narrowPeak | 15,969,754 | 9/1/21 | 08/22/24 | Called peaks | ChIA-PET CTCF peaks | Biosample_summary=WTC11 genetically modified (insertion) using CRISPR;Lab=Charles Lee;System=integumental system;GM=[Method- CRISPR|Category- insertion];Submitted_track_name=LHW0005V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 | Integumentary | Unknown | ENCODE WTC11 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR779QAB] [Orig: Biosample_summary=WTC11 genetically modified (insertion) using CRISPR;Lab=Charles Lee;System=integumental system;GM=[Method- CRISPR|Category- insertion];Submitted_track_name=LHW0005V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown] |
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