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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN000020 ENCODE Download 63,867 106,253,000,000 long range chromatin interactions hg19 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR000BZW 1 1_1 POLR2A ChIA-PET bed bed12 2,040,457 9/24/11 02/19/19 Chromatin Interactions ChIA-PET protein long range chromatin interactions Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE HeLa-S3 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000BZW] [Orig: Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisChiaPetHelas3Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000026 ENCODE Download 4,318 1,736,183,127 long range chromatin interactions hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BZZ 1 1_1 ESR1 ChIA-PET bed bed12 164,541 9/24/11 02/19/19 Chromatin Interactions ChIA-PET protein long range chromatin interactions Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 1) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000027 ENCODE Download 5,498 2,320,670,350 long range chromatin interactions hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BZZ 2 2_1 ESR1 ChIA-PET bed bed12 208,287 9/24/11 02/19/19 Chromatin Interactions ChIA-PET protein long range chromatin interactions Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 2) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep2.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000028 ENCODE Download 2,433 1,698,620,256 long range chromatin interactions hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BZZ 3 3_1 ESR1 ChIA-PET bed bed12 92,117 9/24/11 02/19/19 Chromatin Interactions ChIA-PET protein long range chromatin interactions Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 3) ChIA-PET ESR1 long range chromatin interactions (bed12) [Experiment: ENCSR000BZZ] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisChiaPetMcf7EraaInteractionsRep3.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000033 ENCODE Download 11,832 15,721,374,097 long range chromatin interactions hg19 NB4 Cell line EFO:0002798 Blood ENCSR000CAB 1 1_1 POLR2A ChIA-PET bed bed12 392,479 9/24/11 02/19/19 Chromatin Interactions ChIA-PET protein long range chromatin interactions Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE NB4 (repl. 1) ChIA-PET POLR2A long range chromatin interactions (bed12) [Experiment: ENCSR000CAB] [Orig: Biosample_summary=NB4;Lab=Yijun Ruan, JAX;System=skeletal system,immune system;Submitted_track_name=wgEncodeGisChiaPetNb4Pol2InteractionsRep1.bigBed;Experiment_date_released=05/24/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN036892 ENCODE Download 51,241 44,543,252 peaks hg38 CD8+ alpha-beta T cell Primary cell NTR:0000666 Blood ENCSR217TFN 1 1_1 POLR2A ChIA-PET bed broadPeak 782,707 7/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR217TFN] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0072H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_releas
NGEN036893 ENCODE Download 48,188 41,613,025 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000499 Blood ENCSR154MAJ 2 2_1 CTCF ChIA-PET bed broadPeak 764,111 7/20/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0093V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab
NGEN036894 ENCODE Download 28,343 36,611,297 peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR789ZIJ 1 1_1 POLR2A ChIA-PET bed broadPeak 444,933 10/15/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/18/2020;File_analysis_title=Lab custom GRCh38 Digestive Child ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR789ZIJ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0021N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/18/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child]
NGEN036895 ENCODE Download 34,492 25,195,847 peaks hg38 HEK293T Cell line EFO:0001184 Kidney ENCSR676KCF 1 1_1 CTCF ChIA-PET bed broadPeak 525,496 10/21/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Renal Unknown ENCODE HEK293T (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0084H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036896 ENCODE Download 43,339 27,876,258 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000896 Blood ENCSR093CTT 1 1_1 CTCF ChIA-PET bed broadPeak 672,569 7/15/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0042H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life
NGEN036897 ENCODE Download 49,416 44,776,439 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR448ZLA 1 1_1 POLR2A ChIA-PET bed broadPeak 783,787 7/14/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036898 ENCODE Download 29,381 23,937,348 peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR880DSH 3 3_1 POLR2A ChIA-PET bed broadPeak 442,126 2/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE K562 (repl. 3) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0012V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036899 ENCODE Download 66,968 53,256,388 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000665 Blood ENCSR291RCO 1 1_1 CTCF ChIA-PET bed broadPeak 1,045,590 7/21/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0048H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Exp
NGEN036900 ENCODE Download 42,940 38,689,183 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR448ZLA 2 2_1 POLR2A ChIA-PET bed broadPeak 659,740 7/14/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0073H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036901 ENCODE Download 73,116 63,122,252 peaks hg38 Naive thymus-derived CD4+, alpha-beta T cell Primary cell CL:0000895 Blood ENCSR763OCG 1 1_1 POLR2A ChIA-PET bed broadPeak 1,092,805 7/17/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus Cardiovascular Adult ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0063H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Na
NGEN036902 ENCODE Download 60,133 58,106,153 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000498 Blood ENCSR569TBN 1 1_1 POLR2A ChIA-PET bed broadPeak 941,213 7/19/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR569TBN] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0078H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036903 ENCODE Download 24,649 13,888,556 peaks hg38 H1-hESC Stem cell EFO:0003042 Embryo ENCSR095SXC 1 1_1 CTCF ChIA-PET bed broadPeak 389,923 8/31/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell Embryo Embryonic ENCODE H1-hESC (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0002H1H2E2H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN036904 ENCODE Download 65,672 55,264,394 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000896 Blood ENCSR314TNQ 2 2_1 POLR2A ChIA-PET bed broadPeak 985,700 7/16/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0058H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Lif
NGEN036905 ENCODE Download 40,061 29,287,763 peaks hg38 CD8+ T cell Primary cell CL:0000625 Blood ENCSR180GEY 1 1_1 CTCF ChIA-PET bed broadPeak 627,644 7/23/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0043H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036906 ENCODE Download 73,830 65,665,853 peaks hg38 CD8+ alpha-beta naive T cell Primary cell NTR:0000667 Blood ENCSR114QCL 1 1_1 POLR2A ChIA-PET bed broadPeak 1,115,296 7/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114QCL] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0091V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Expe
NGEN036907 ENCODE Download 63,643 49,563,216 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000664 Blood ENCSR550JJT 2 2_1 CTCF ChIA-PET bed broadPeak 965,016 7/19/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0070H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experi
NGEN036908 ENCODE Download 123,479 107,897,263 peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR278IZK 2 2_1 CTCF ChIA-PET bed broadPeak 1,942,593 3/31/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 Digestive Adult ENCODE HCT116 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0127V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036909 ENCODE Download 64,394 61,068,290 peaks hg38 CD8+ alpha-beta memory cell Primary cell NTR:0000504 Blood ENCSR041UPG 1 1_1 POLR2A ChIA-PET bed broadPeak 958,843 7/27/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR041UPG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0087V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab
NGEN036910 ENCODE Download 22,163 12,491,598 peaks hg38 CD4+ alpha-beta T cell Primary cell NTR:0000663 Blood ENCSR962FFY 1 1_1 CTCF ChIA-PET bed broadPeak 337,828 7/16/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0035H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released
NGEN036911 ENCODE Download 46,302 33,139,011 peaks hg38 CD8+ alpha-beta T cell Primary cell CL:0000906 Blood ENCSR408MRB 1 1_1 CTCF ChIA-PET bed broadPeak 729,499 7/23/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR408MRB] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0044H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life
NGEN036912 ENCODE Download 25,082 14,323,145 peaks hg38 H1-hESC Stem cell EFO:0003042 Embryo ENCSR095SXC 2 2_1 CTCF ChIA-PET bed broadPeak 403,624 8/31/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell Embryo Embryonic ENCODE H1-hESC (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR095SXC] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0003H1H2E3H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN036913 ENCODE Download 103,156 78,619,964 peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR035PVZ 2 2_1 POLR2A ChIA-PET bed broadPeak 1,549,264 4/1/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 Digestive Adult ENCODE HCT116 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0128V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036914 ENCODE Download 68,425 60,673,045 peaks hg38 CD8+ alpha-beta memory cell Primary cell CL:0000909 Blood ENCSR149TQU 1 1_1 POLR2A ChIA-PET bed broadPeak 1,011,443 7/26/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR149TQU] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0086V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036915 ENCODE Download 43,425 28,175,621 peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR905HWW 2 2_1 POLR2A ChIA-PET bed broadPeak 630,237 8/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Unknown ENCODE GM12878 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0045V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036916 ENCODE Download 55,562 46,289,006 peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR905HWW 1 1_1 POLR2A ChIA-PET bed broadPeak 814,487 8/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Unknown ENCODE GM12878 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR905HWW] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0035N_0035V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036917 ENCODE Download 28,451 28,036,631 peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR597AKG 1 1_1 CTCF ChIA-PET bed broadPeak 473,877 10/16/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE K562 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0002N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036918 ENCODE Download 50,295 35,766,014 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR345UIQ 2 2_1 CTCF ChIA-PET bed broadPeak 768,621 7/14/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0038N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036919 ENCODE Download 64,128 54,351,018 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000896 Blood ENCSR314TNQ 1 1_1 POLR2A ChIA-PET bed broadPeak 941,486 7/16/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR314TNQ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0040N.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Lif
NGEN036920 ENCODE Download 54,636 38,638,646 peaks hg38 CD8+ alpha-beta T cell Primary cell NTR:0000666 Blood ENCSR531UMR 1 1_1 CTCF ChIA-PET bed broadPeak 863,779 7/25/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR531UMR] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0045H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta T cell;Experiment_date_released
NGEN036921 ENCODE Download 36,719 35,099,632 peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR411IVB 1 1_1 CTCF ChIA-PET bed broadPeak 593,837 10/10/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 Digestive Child ENCODE HepG2 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0022N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Child]
NGEN036922 ENCODE Download 65,073 56,625,638 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000497 Blood ENCSR402NAQ 1 1_1 POLR2A ChIA-PET bed broadPeak 997,511 7/18/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR402NAQ] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0064H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab c
NGEN036923 ENCODE Download 49,793 45,801,642 peaks hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR404FPI 3 3_1 CTCF ChIA-PET bed broadPeak 820,002 6/29/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 3) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0142V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage
NGEN036924 ENCODE Download 47,567 42,998,985 peaks hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR404FPI 1 1_1 CTCF ChIA-PET bed broadPeak 764,764 3/23/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0129V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage
NGEN036925 ENCODE Download 31,520 26,602,453 peaks hg38 HEK293T Cell line EFO:0001184 Kidney ENCSR773XVD 1 1_1 POLR2A ChIA-PET bed broadPeak 483,337 10/21/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 Renal Unknown ENCODE HEK293T (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0083H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036926 ENCODE Download 60,163 46,391,683 peaks hg38 CD4+ alpha-beta T cell Primary cell NTR:0000663 Blood ENCSR733XLQ 1 1_1 POLR2A ChIA-PET bed broadPeak 870,080 7/16/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0076H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_releas
NGEN036927 ENCODE Download 26,768 19,280,861 peaks hg38 MCF 10A Cell line EFO:0001200 Female Reproductive ENCSR403ZYJ 2 2_1 CTCF ChIA-PET bed broadPeak 416,404 10/20/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Reproductive Adult ENCODE MCF 10A (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036928 ENCODE Download 46,168 33,743,325 peaks hg38 CD4+ alpha-beta T cell Primary cell NTR:0000663 Blood ENCSR962FFY 2 2_1 CTCF ChIA-PET bed broadPeak 688,297 7/16/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR962FFY] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0039H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released
NGEN036929 ENCODE Download 28,828 27,846,208 peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR597AKG 2 2_1 CTCF ChIA-PET bed broadPeak 482,755 10/16/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE K562 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR597AKG] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0001N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036930 ENCODE Download 18,969 12,780,419 peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR911ZMB 2 2_1 CTCF ChIA-PET bed broadPeak 305,298 10/21/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Respiratory Adult ENCODE A549 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0006H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036931 ENCODE Download 34,617 28,035,679 peaks hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR080OMN 2 2_1 POLR2A ChIA-PET bed broadPeak 498,804 3/23/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0131V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life sta
NGEN036932 ENCODE Download 55,607 42,924,100 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000498 Blood ENCSR106INW 1 1_1 CTCF ChIA-PET bed broadPeak 853,653 7/19/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0046H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036933 ENCODE Download 58,692 48,924,469 peaks hg38 CD8+ alpha-beta memory T cell Primary cell NTR:0000669 Blood ENCSR114KEO 1 1_1 POLR2A ChIA-PET bed broadPeak 834,255 7/27/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR114KEO] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0088_88V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cel
NGEN036934 ENCODE Download 32,662 27,466,426 peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR138NSW 2 2_1 POLR2A ChIA-PET bed broadPeak 495,907 1/12/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38 Respiratory Adult ENCODE A549 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0027V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036935 ENCODE Download 58,446 44,937,475 peaks hg38 CD4+ alpha-beta T cell Primary cell NTR:0000663 Blood ENCSR733XLQ 2 2_1 POLR2A ChIA-PET bed broadPeak 850,802 7/17/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR733XLQ] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0075H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta T cell;Experiment_date_releas
NGEN036936 ENCODE Download 28,585 21,685,354 peaks hg38 MCF 10A Cell line EFO:0001200 Female Reproductive ENCSR403ZYJ 1 1_1 CTCF ChIA-PET bed broadPeak 454,496 10/20/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Reproductive Adult ENCODE MCF 10A (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR403ZYJ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0010H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036937 ENCODE Download 24,683 17,215,728 peaks hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR404FPI 2 2_1 CTCF ChIA-PET bed broadPeak 410,960 6/29/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR404FPI] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0089V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life stage
NGEN036938 ENCODE Download 70,144 66,531,073 peaks hg38 Naive thymus-derived CD8+, alpha-beta T cell Primary cell CL:0000900 Blood ENCSR064OTE 1 1_1 POLR2A ChIA-PET bed broadPeak 1,055,720 7/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR064OTE] [Orig: Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0090V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036939 ENCODE Download 48,527 48,808,330 peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR857MYZ 2 2_1 POLR2A ChIA-PET bed broadPeak 748,750 12/17/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38 Digestive Child ENCODE HepG2 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0124_124V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child]
NGEN036940 ENCODE Download 54,365 40,357,463 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000664 Blood ENCSR550JJT 1 1_1 CTCF ChIA-PET bed broadPeak 836,748 7/19/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR550JJT] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0051H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experi
NGEN036941 ENCODE Download 50,785 41,533,436 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000664 Blood ENCSR446MTI 2 2_1 POLR2A ChIA-PET bed broadPeak 735,447 7/18/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0097_97V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;E
NGEN036942 ENCODE Download 34,139 24,274,761 peaks hg38 H1-hESC Stem cell EFO:0003042 Embryo ENCSR782EKZ 1 1_1 POLR2A ChIA-PET bed broadPeak 486,107 8/31/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell Embryo Embryonic ENCODE H1-hESC (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0006N.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN036943 ENCODE Download 72,052 66,092,291 peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR278IZK 1 1_1 CTCF ChIA-PET bed broadPeak 1,128,267 3/31/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 Digestive Adult ENCODE HCT116 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR278IZK] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0118V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036944 ENCODE Download 46,772 32,234,121 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000497 Blood ENCSR731OFF 2 2_1 CTCF ChIA-PET bed broadPeak 661,466 7/17/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0069H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab cus
NGEN036945 ENCODE Download 44,788 33,552,986 peaks hg38 CD8+ alpha-beta memory T cell Primary cell NTR:0000669 Blood ENCSR378IUJ 1 1_1 CTCF ChIA-PET bed broadPeak 705,644 7/27/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR378IUJ] [Orig: Biosample_summary=Stimulated activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0085V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD8-positive, alpha-beta memory T cell;Exp
NGEN036946 ENCODE Download 33,389 25,239,846 peaks hg38 CD8+ alpha-beta memory cell Primary cell CL:0000909 Blood ENCSR187PXW 1 1_1 CTCF ChIA-PET bed broadPeak 529,430 7/26/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR187PXW] [Orig: Biosample_summary=CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0083V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036947 ENCODE Download 22,766 15,907,228 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR345UIQ 1 1_1 CTCF ChIA-PET bed broadPeak 368,780 7/13/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036948 ENCODE Download 33,822 26,894,403 peaks hg38 Naive thymus-derived CD4+, alpha-beta T cell Primary cell CL:0000895 Blood ENCSR763OCG 2 2_1 POLR2A ChIA-PET bed broadPeak 504,333 7/17/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus Cardiovascular Adult ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR763OCG] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0095V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Na
NGEN036949 ENCODE Download 24,144 20,761,867 peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR411IVB 2 2_1 CTCF ChIA-PET bed broadPeak 387,598 10/15/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38 Digestive Child ENCODE HepG2 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR411IVB] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=LHH0038H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=03/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Child]
NGEN036950 ENCODE Download 29,801 20,009,261 peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR184YZV 1 1_1 CTCF ChIA-PET bed broadPeak 473,169 12/31/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Unknown ENCODE GM12878 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0052H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036951 ENCODE Download 60,917 48,578,015 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000499 Blood ENCSR154MAJ 1 1_1 CTCF ChIA-PET bed broadPeak 951,109 7/20/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR154MAJ] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0047H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab
NGEN036952 ENCODE Download 55,494 47,880,739 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000499 Blood ENCSR877ZRR 1 1_1 POLR2A ChIA-PET bed broadPeak 849,932 7/20/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR877ZRR] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0077H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=La
NGEN036953 ENCODE Download 27,926 25,246,855 peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR138NSW 1 1_1 POLR2A ChIA-PET bed broadPeak 421,144 1/12/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38 Respiratory Adult ENCODE A549 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR138NSW] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0026V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/12/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036954 ENCODE Download 45,615 33,716,960 peaks hg38 CD8+ alpha-beta T cell Primary cell CL:0000906 Blood ENCSR982KEM 1 1_1 POLR2A ChIA-PET bed broadPeak 689,224 7/24/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR982KEM] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0071H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Lif
NGEN036955 ENCODE Download 31,049 20,569,097 peaks hg38 CD8+ T cell Primary cell CL:0000625 Blood ENCSR180GEY 2 2_1 CTCF ChIA-PET bed broadPeak 482,965 7/23/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR180GEY] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0067H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036956 ENCODE Download 22,600 15,650,012 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR345UIQ 1 1_1 CTCF ChIA-PET bed broadPeak 362,709 7/14/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR345UIQ] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0036V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036957 ENCODE Download 32,240 25,060,934 peaks hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR080OMN 1 1_1 POLR2A ChIA-PET bed broadPeak 469,515 3/23/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR080OMN] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Charles Lee;System=reproductive system,circulatory system;Submitted_track_name=LHH0130V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein] [Life sta
NGEN036958 ENCODE Download 51,429 46,244,534 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000624 Blood ENCSR448ZLA 1 1_1 POLR2A ChIA-PET bed broadPeak 815,933 7/14/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR448ZLA] [Orig: Biosample_summary=CD4-positive, alpha-beta T cell male adult (20 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0057V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036959 ENCODE Download 59,706 43,399,705 peaks hg38 Naive thymus-derived CD4+, alpha-beta T cell Primary cell CL:0000895 Blood ENCSR120LMS 1 1_1 CTCF ChIA-PET bed broadPeak 890,781 7/17/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus Cardiovascular Adult ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR120LMS] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0049H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38;premapping_cell_type=Naiv
NGEN036960 ENCODE Download 54,970 42,256,844 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000498 Blood ENCSR106INW 2 2_1 CTCF ChIA-PET bed broadPeak 862,530 7/19/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR106INW] [Orig: Biosample_summary=CD4-positive, alpha-beta memory T cell male adult (43 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0092V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD4-positive, alpha-beta memory T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036961 ENCODE Download 28,828 19,810,962 peaks hg38 H1-hESC Stem cell EFO:0003042 Embryo ENCSR782EKZ 2 2_1 POLR2A ChIA-PET bed broadPeak 427,189 8/31/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell Embryo Embryonic ENCODE H1-hESC (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR782EKZ] [Orig: Biosample_summary=H1;Lab=Charles Lee;Submitted_track_name=LHES0007H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN036962 ENCODE Download 66,383 58,593,350 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000664 Blood ENCSR446MTI 1 1_1 POLR2A ChIA-PET bed broadPeak 1,017,037 7/19/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR446MTI] [Orig: Biosample_summary=Stimulated activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0065H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated naive CD4-positive, alpha-beta T cell;Expe
NGEN036963 ENCODE Download 60,310 54,109,552 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000665 Blood ENCSR159PXF 1 1_1 POLR2A ChIA-PET bed broadPeak 942,739 7/21/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR159PXF] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0079H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;E
NGEN036964 ENCODE Download 59,341 51,874,539 peaks hg38 CD4+ alpha-beta memory T cell Primary cell NTR:0000665 Blood ENCSR291RCO 2 2_1 CTCF ChIA-PET bed broadPeak 937,815 7/21/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta memory T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR291RCO] [Orig: Biosample_summary=Stimulated activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0094V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Stimulated activated CD4-positive, alpha-beta memory T cell;Exp
NGEN036965 ENCODE Download 102,798 63,058,596 peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR035PVZ 1 1_1 POLR2A ChIA-PET bed broadPeak 1,508,972 4/1/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38 Digestive Adult ENCODE HCT116 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR035PVZ] [Orig: Biosample_summary=HCT116 adult 48 years;Lab=Charles Lee;System=digestive system;Submitted_track_name=LHH0098V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036966 ENCODE Download 46,963 51,048,001 peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR857MYZ 1 1_1 POLR2A ChIA-PET bed broadPeak 730,278 10/16/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38 Digestive Child ENCODE HepG2 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR857MYZ] [Orig: Biosample_summary=HepG2 child 15 years;Lab=Yijun Ruan, JAX;System=digestive system,endocrine system,exocrine system;Submitted_track_name=LHH0123V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/30/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Child]
NGEN036967 ENCODE Download 30,274 23,746,147 peaks hg38 MCF 10A Cell line EFO:0001200 Female Reproductive ENCSR499JGQ 2 2_1 POLR2A ChIA-PET bed broadPeak 467,110 10/20/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 Reproductive Adult ENCODE MCF 10A (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0012H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036968 ENCODE Download 34,532 29,271,887 peaks hg38 MCF 10A Cell line EFO:0001200 Female Reproductive ENCSR499JGQ 1 1_1 POLR2A ChIA-PET bed broadPeak 535,629 10/20/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 Reproductive Adult ENCODE MCF 10A (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR499JGQ] [Orig: Biosample_summary=MCF 10A adult 36 years;Lab=Yijun Ruan, JAX;System=exocrine system,integumental system;Submitted_track_name=LHM0008H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036969 ENCODE Download 52,712 39,380,390 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000497 Blood ENCSR731OFF 1 1_1 CTCF ChIA-PET bed broadPeak 811,376 7/17/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR731OFF] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0050H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab cus
NGEN036970 ENCODE Download 32,545 30,115,089 peaks hg38 HEK293T Cell line EFO:0001184 Kidney ENCSR773XVD 2 2_1 POLR2A ChIA-PET bed broadPeak 499,934 10/21/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 Renal Unknown ENCODE HEK293T (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR773XVD] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0085V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036971 ENCODE Download 31,503 26,014,302 peaks hg38 CD8+ alpha-beta memory cell Primary cell NTR:0000504 Blood ENCSR697ZHG 1 1_1 CTCF ChIA-PET bed broadPeak 494,912 7/27/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ alpha-beta memory cell (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR697ZHG] [Orig: Biosample_summary=Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0084V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD8-positive, alpha-beta memory T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab cu
NGEN036972 ENCODE Download 18,082 11,932,192 peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR911ZMB 1 1_1 CTCF ChIA-PET bed broadPeak 280,574 10/21/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Respiratory Adult ENCODE A549 (repl. 1) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR911ZMB] [Orig: Biosample_summary=A549 adult 58 years;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0005H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036973 ENCODE Download 40,986 29,857,334 peaks hg38 CD4+ alpha-beta T cell Primary cell CL:0000896 Blood ENCSR093CTT 2 2_1 CTCF ChIA-PET bed broadPeak 639,925 7/15/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR093CTT] [Orig: Biosample_summary=Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0074H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38] [Life
NGEN036974 ENCODE Download 31,686 23,098,719 peaks hg38 HEK293T Cell line EFO:0001184 Kidney ENCSR676KCF 2 2_1 CTCF ChIA-PET bed broadPeak 483,977 10/21/20 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Renal Unknown ENCODE HEK293T (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR676KCF] [Orig: Biosample_summary=HEK293T;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0086V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036975 ENCODE Download 36,390 27,947,066 peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR184YZV 2 2_1 CTCF ChIA-PET bed broadPeak 535,221 8/26/21 11/07/22 Called peaks ChIA-PET CTCF peaks Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Unknown ENCODE GM12878 (repl. 2) ChIA-PET CTCF peaks (broadPeak) [Experiment: ENCSR184YZV] [Orig: Biosample_summary=GM12878;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHG0066V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036976 ENCODE Download 14,083 8,375,078 peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR880DSH 1 1_1 POLR2A ChIA-PET bed broadPeak 213,872 10/16/20 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE K562 (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0009H.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036977 ENCODE Download 28,283 22,923,833 peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR880DSH 2 2_1 POLR2A ChIA-PET bed broadPeak 416,866 2/25/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0011V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE K562 (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR880DSH] [Orig: Biosample_summary=K562 adult 53 years;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHK0011V.for.BROWSER.spp.z6.broadPeak.bb;Experiment_date_released=02/26/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036978 ENCODE Download 33,159 26,810,936 peaks hg38 CD8+ T cell Primary cell CL:0000625 Blood ENCSR185VQH 1 1_1 POLR2A ChIA-PET bed broadPeak 517,872 7/23/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0066H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD8+ T cell (repl. 1) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR185VQH] [Orig: Biosample_summary=CD8-positive, alpha-beta T cell male adult (21 years);Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0066H.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=CD8-positive, alpha-beta T cell;Experiment_date_released=10/06/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Adult]
NGEN036979 ENCODE Download 40,553 26,778,552 peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000497 Blood ENCSR402NAQ 2 2_1 POLR2A ChIA-PET bed broadPeak 554,112 7/18/21 11/07/22 Called peaks ChIA-PET protein peaks Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0096_96V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 2) ChIA-PET POLR2A peaks (broadPeak) [Experiment: ENCSR402NAQ] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHT0096_96V.for.BROWSER.spp.z6.broadPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=07/21/2021;File_analysis_title=La
NGEN036980 ENCODE Download 383,714 161,679,621 peaks hg38 HEK293 Cell line EFO:0001182 Kidney ENCSR934CYB 2 2_1 POLR2A ChIA-PET bed narrowPeak 9,641,450 10/9/20 08/22/24 Called peaks ChIA-PET protein peaks Biosample_summary=HEK293;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0087V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38 Renal Unknown ENCODE HEK293 (repl. 2) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR934CYB] [Orig: Biosample_summary=HEK293;Lab=Yijun Ruan, JAX;System=excretory system;Submitted_track_name=LHH0087V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=12/16/2020;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036981 ENCODE Download 569,730 224,283,686 peaks hg38 SK-N-SH Cell line EFO:0003072 Brain ENCSR514HBO 2 2_1 CTCF ChIA-PET bed narrowPeak 13,459,245 10/8/20 08/22/24 Called peaks ChIA-PET CTCF peaks Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=LHS0003H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Nervous Unknown ENCODE SK-N-SH (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR514HBO] [Orig: Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=LHS0003H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036982 ENCODE Download 394,237 128,926,832 peaks hg38 BJ Cell line EFO:0002779 Connective Tissue ENCSR956IXE 1 1_1 POLR2A ChIA-PET bed narrowPeak 10,176,713 9/22/21 08/22/24 Called peaks ChIA-PET protein peaks Biosample_summary=BJ;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=LHB0010.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/23/2021;File_analysis_title=Lab custom GRCh38 Skeletal Unknown ENCODE BJ (repl. 1) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR956IXE] [Orig: Biosample_summary=BJ;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=LHB0010.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/23/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036983 ENCODE Download 266,095 116,336,830 peaks hg38 AG04450 Cell line EFO:0006270 Lung ENCSR514BNX 2 2_1 POLR2A ChIA-PET bed narrowPeak 6,958,717 10/10/20 08/22/24 Called peaks ChIA-PET protein peaks Biosample_summary=AG04450;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0017V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=02/23/2021;File_analysis_title=Lab custom GRCh38 Respiratory Unknown ENCODE AG04450 (repl. 2) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR514BNX] [Orig: Biosample_summary=AG04450;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=LHA0017V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=02/23/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036984 ENCODE Download 533,453 212,743,354 peaks hg38 Common myeloid progenitor cell Primary cell CL:0001059 Blood ENCSR421NGZ 1 1_1 CTCF ChIA-PET bed narrowPeak 13,368,719 7/29/21 08/22/24 Called peaks ChIA-PET CTCF peaks Biosample_summary=Common myeloid progenitor, CD34-positive;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHHSC0001H.no_input_all_peaks.maxscore1000.narrowPeak.bb;previous_filer_cell_type=Common myeloid progenitor, CD34-positive;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38 Cardiovascular Unknown ENCODE Common myeloid progenitor cell (repl. 1) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR421NGZ] [Orig: Biosample_summary=Common myeloid progenitor, CD34-positive;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=LHHSC0001H.no_input_all_peaks.maxscore1000.narrowPeak.bb;previous_filer_cell_type=Common myeloid progenitor, CD34-positive;Experiment_date_released=08/02/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036985 ENCODE Download 440,366 190,496,509 peaks hg38 AG04449 Cell line CLO:0034837 Skin ENCSR580MNR 2 2_1 CTCF ChIA-PET bed narrowPeak 11,182,061 10/9/20 08/22/24 Called peaks ChIA-PET CTCF peaks Biosample_summary=AG04449;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=LHA0011H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38 Integumentary Unknown ENCODE AG04449 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR580MNR] [Orig: Biosample_summary=AG04449;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=LHA0011H.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=01/25/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
NGEN036986 ENCODE Download 663,548 252,096,681 peaks hg38 WTC11 Cell line EFO:0009747 Skin ENCSR779QAB 2 2_1 CTCF ChIA-PET bed narrowPeak 15,969,754 9/1/21 08/22/24 Called peaks ChIA-PET CTCF peaks Biosample_summary=WTC11 genetically modified (insertion) using CRISPR;Lab=Charles Lee;System=integumental system;GM=[Method- CRISPR|Category- insertion];Submitted_track_name=LHW0005V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38 Integumentary Unknown ENCODE WTC11 (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR779QAB] [Orig: Biosample_summary=WTC11 genetically modified (insertion) using CRISPR;Lab=Charles Lee;System=integumental system;GM=[Method- CRISPR|Category- insertion];Submitted_track_name=LHW0005V.no_input_all_peaks.maxscore1000.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=Lab custom GRCh38] [Life stage: Unknown]
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