Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN000298 | ENCODE | Download | 209,654 | 17,635,469 | predicted transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CII | 1 | 1_1 | Not applicable | CAGE-Seq | bed bedRnaElements | 4,201,007 | 2/10/2012 | 02/19/2019 | TSS | CAGE-Seq predicted transcription start sites | Biosample_summary=Homo sapiens K562 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000329,GEO:GSM849353;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=wgEncodeRikenCageK562CytosolPamTssHmmV2.bedRnaElements.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell; | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq predicted transcription start sites (bedRnaElements) [Experiment: ENCSR000CII] [Life stage: Adult] |
| NGEN000300 | ENCODE | Download | 530,070 | 41,423,614 | predicted transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CIJ | 1 | 1_1 | Not applicable | CAGE-Seq | bed bedRnaElements | 10,437,277 | 2/10/2012 | 02/19/2019 | TSS | CAGE-Seq predicted transcription start sites | Biosample_summary=Homo sapiens K562 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000330,GEO:GSM849337;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=wgEncodeRikenCageK562NucleusPamTssHmmV2.bedRnaElements.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;EN | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq predicted transcription start sites (bedRnaElements) [Experiment: ENCSR000CIJ] [Life stage: Adult] |
| NGEN000470 | ENCODE | Download | 18,760 | 1,617,983 | transcription start sites | hg19 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000CJR | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 979,050 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849361,UCSC-ENCODE-hg19:wgEncodeEH001154;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJR_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental | Integumentary | Unknown | ENCODE Keratinocyte (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJR] [Life stage: Unknown] |
| NGEN000652 | ENCODE | Download | 23,358 | 1,712,218 | transcription start sites | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CIW | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 966,353 | 9/26/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000343,GEO:GSM849351;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CIW_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,dige | Digestive | Child | ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIW] [Life stage: Child] |
| NGEN000688 | ENCODE | Download | 4,949 | 362,335 | transcription start sites | hg19 | Osteoblast | Primary cell | CL:0000062 | Bone | ENCSR000CKK | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 131,275 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002745,GEO:GSM979640;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKK_rep1_1_ENCSR000CKK_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell | Skeletal | Adult | ENCODE Osteoblast (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKK] [Life stage: Adult] |
| NGEN000713 | ENCODE | Download | 35,553 | 4,013,751 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLB | 3 | 3_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,449,491 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002762,GEO:GSM979647;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous | Nervous | Child | ENCODE SK-N-SH (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Life stage: Child] |
| NGEN000846 | ENCODE | Download | 6,434 | 600,461 | transcription start sites | hg38 | CD14+ monocyte | Primary cell | CL:0001054 | Blood | ENCSR000CKW | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 168,786 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002757,GEO:GSM979655;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKW_rep1_1_ENCSR000CKW_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoi | Cardiovascular | Unknown | ENCODE CD14+ monocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKW] [Life stage: Unknown] |
| NGEN000848 | ENCODE | Download | 14,827 | 1,069,988 | transcription start sites | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CJU | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 803,689 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001157,GEO:GSM849362;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJU_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cel | Nervous | Child | ENCODE SK-N-SH (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJU] [Life stage: Child] |
| NGEN000863 | ENCODE | Download | 18,721 | 1,582,212 | transcription start sites | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CIT | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 809,717 | 1/4/2017 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878 nucleolus fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849352,UCSC-ENCODE-hg19:wgEncodeEH000340;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2013-03-29;Submitted_track_name=ENCSR000CIT_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIT] [Life stage: Adult] |
| NGEN000893 | ENCODE | Download | 15,056 | 1,206,854 | transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CIM | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 815,250 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000333,GEO:GSM849338;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune syst | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Life stage: Adult] |
| NGEN000909 | ENCODE | Download | 54 | 2,198 | transcription start sites | hg38 | Dermal papilla cell | Primary cell | CL:0000346 | Hair Follicle | ENCSR000CKI | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 1,459 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002743,GEO:GSM979638;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hair follicle dermal papil | Integumentary | Adult | ENCODE Dermal papilla cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKI] [Life stage: Adult] |
| NGEN001007 | ENCODE | Download | 12,570 | 782,220 | transcription start sites | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJK | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 666,478 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM849343,UCSC-ENCODE-hg19:wgEncodeEH001147;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJK_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,dige | Digestive | Child | ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJK] [Life stage: Child] |
| NGEN001079 | ENCODE | Download | 8,135 | 459,715 | transcription start sites | hg19 | Osteoblast | Primary cell | CL:0000062 | Bone | ENCSR000CKK | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 479,774 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002745,GEO:GSM979640;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_sl | Skeletal | Adult | ENCODE Osteoblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Life stage: Adult] |
| NGEN001233 | ENCODE | Download | 9,249 | 591,425 | transcription start sites | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CJO | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 506,289 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens MCF-7;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSM849364,UCSC-ENCODE-hg19:wgEncodeEH001151;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJO_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENC | Reproductive | Adult | ENCODE MCF-7 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJO] [Life stage: Adult] |
| NGEN001338 | ENCODE | Download | 20,844 | 534,424 | transcription start sites | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CIR | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 748,859 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000338,GEO:GSM849329;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIR] [Life stage: Adult] |
| NGEN001408 | ENCODE | Download | 149 | 2,944 | transcription start sites | hg19 | Endothelial cell | Primary cell | CL:0002545 | Blood Vessel | ENCSR000CKG | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 6,694 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979636,UCSC-ENCODE-hg19:wgEncodeEH002741;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKG_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thoracic aorta endothelial cell;ENCODE_cell_sli | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKG] [Life stage: Adult] |
| NGEN001447 | ENCODE | Download | 11,382 | 1,147,025 | transcription start sites | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000CJJ | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 297,305 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HeLa-S3;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM849342,UCSC-ENCODE-hg19:wgEncodeEH001146;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJJ_rep1_1_ENCSR000CJJ_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive syste | Reproductive | Adult | ENCODE HeLa-S3 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJJ] [Life stage: Adult] |
| NGEN001517 | ENCODE | Download | 265 | 5,585 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:0002547 | Blood Vessel | ENCSR000CKF | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 12,073 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979637,UCSC-ENCODE-hg19:wgEncodeEH002740;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKF_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of the aortic adventitia;ENCODE_ | Cardiovascular | Adult | ENCODE Fibroblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKF] [Life stage: Adult] |
| NGEN001569 | ENCODE | Download | 13,473 | 1,006,420 | transcription start sites | hg19 | CD14+ monocyte | Primary cell | CL:0001054 | Blood | ENCSR000CKW | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 668,042 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002757,GEO:GSM979655;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKW_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=leukocyte,myeloid cell,monocyte,hematopoietic cell;ENCODE_ | Cardiovascular | Unknown | ENCODE CD14+ monocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKW] [Life stage: Unknown] |
| NGEN001589 | ENCODE | Download | 13,515 | 1,062,222 | transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CJN | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 743,181 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001150,GEO:GSM849365;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosamp | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Life stage: Adult] |
| NGEN001593 | ENCODE | Download | 23,637 | 2,506,819 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000CJG | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,317,633 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens endothelial cell of umbilical vein nuclear fraction newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849325,UCSC-ENCODE-hg19:wgEncodeEH001143;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJG_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell | Embryo | Newborn | ENCODE Endothelial cell (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJG] [Life stage: Newborn] |
| NGEN001605 | ENCODE | Download | 11,106 | 1,197,555 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000CJR | 3, 4 | 3_1 ,4_1 | Not applicable | CAGE-Seq | bed idr_peak | 289,643 | 9/26/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens keratinocyte nuclear fraction female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849361,UCSC-ENCODE-hg19:wgEncodeEH001154;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJR_rep3_1_ENCSR000CJR_rep4_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_s | Integumentary | Unknown | ENCODE Keratinocyte (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJR] [Life stage: Unknown] |
| NGEN001655 | ENCODE | Download | 28,333 | 3,213,146 | transcription start sites | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLB | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,451,172 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002762,GEO:GSM979647;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous | Nervous | Child | ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Life stage: Child] |
| NGEN001710 | ENCODE | Download | 12,344 | 1,222,939 | transcription start sites | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CKA | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 318,493 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001680,GEO:GSM849368;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CKA_rep1_1_ENCSR000CKA_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_b | Cardiovascular | Adult | ENCODE GM12878 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKA] [Life stage: Adult] |
| NGEN001727 | ENCODE | Download | 15,867 | 1,214,771 | transcription start sites | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000CJV | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 825,762 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens A549;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM849359,UCSC-ENCODE-hg19:wgEncodeEH001158;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJV_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 ce | Respiratory | Adult | ENCODE A549 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJV] [Life stage: Adult] |
| NGEN001892 | ENCODE | Download | 8,829 | 352,761 | transcription start sites | hg19 | Melanocyte | Primary cell | CL:1000458 | Skin | ENCSR000CKZ | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 392,266 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979649,UCSC-ENCODE-hg19:wgEncodeEH002760;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=melanocyte of skin;ENCODE_cell_slims=melanocyte;ENCODE_syste | Integumentary | Adult | ENCODE Melanocyte (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKZ] [Life stage: Adult] |
| NGEN001937 | ENCODE | Download | 9,827 | 827,778 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000CJP | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 255,557 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens keratinocyte female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849367,UCSC-ENCODE-hg19:wgEncodeEH001152;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJP_rep1_1_ENCSR000CJP_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental | Integumentary | Unknown | ENCODE Keratinocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJP] [Life stage: Unknown] |
| NGEN002036 | ENCODE | Download | 17,484 | 1,452,856 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKR | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 947,837 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM979658,UCSC-ENCODE-hg19:wgEncodeEH002752;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respirat | Respiratory | Embryonic | ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Life stage: Embryonic] |
| NGEN002079 | ENCODE | Download | 16,120 | 1,088,741 | transcription start sites | hg19 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR000CJC | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 918,500 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens H1 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001139,GEO:GSM849356;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJC_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Anal | Embryo | Embryonic | ENCODE H1-hESC (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJC] [Life stage: Embryonic] |
| NGEN002092 | ENCODE | Download | 13,510 | 1,062,680 | transcription start sites | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CJN | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 791,669 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001150,GEO:GSM849365;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJN_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosamp | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Life stage: Adult] |
| NGEN002148 | ENCODE | Download | 28,292 | 3,201,346 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLB | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,298,876 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002762,GEO:GSM979647;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLB_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous | Nervous | Child | ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Life stage: Child] |
| NGEN002159 | ENCODE | Download | 246 | 5,606 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0002327 | Breast | ENCSR000CKJ | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 11,009 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens mammary epithelial cell female adult (23 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 23 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002744,GEO:GSM979641;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKJ_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mammary epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_syst | Reproductive | Adult | ENCODE Epithelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKJ] [Life stage: Adult] |
| NGEN002200 | ENCODE | Download | 12,738 | 1,234,404 | transcription start sites | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJM | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 326,835 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001149,GEO:GSM849335;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digest | Digestive | Child | ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJM] [Life stage: Child] |
| NGEN002206 | ENCODE | Download | 12,006 | 1,796,538 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLB | 3, 4 | 3_1 ,4_1 | Not applicable | CAGE-Seq | bed idr_peak | 315,426 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002762,GEO:GSM979647;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLB_rep3_1_ENCSR000CLB_rep4_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims | Nervous | Child | ENCODE SK-N-SH (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CLB] [Life stage: Child] |
| NGEN002230 | ENCODE | Download | 16,898 | 1,286,818 | transcription start sites | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000CJE | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 943,506 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens endothelial cell of umbilical vein male newborn and newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849327,UCSC-ENCODE-hg19:wgEncodeEH001141;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJE_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endothelial cell | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJE] [Life stage: Newborn] |
| NGEN002243 | ENCODE | Download | 13,052 | 897,175 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKT | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 702,585 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002754,GEO:GSM979656;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_b | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Life stage: Embryonic] |
| NGEN002308 | ENCODE | Download | 16,079 | 1,149,778 | transcription start sites | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CJU | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 871,159 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001157,GEO:GSM849362;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJU_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cel | Nervous | Child | ENCODE SK-N-SH (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJU] [Life stage: Child] |
| NGEN002311 | ENCODE | Download | 13,200 | 1,502,824 | transcription start sites | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJL | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 344,365 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM849334,UCSC-ENCODE-hg19:wgEncodeEH001148;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJL_rep1_1_ENCSR000CJL_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocr | Digestive | Child | ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJL] [Life stage: Child] |
| NGEN002375 | ENCODE | Download | 12,762 | 1,261,370 | transcription start sites | hg19 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR000CJB | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 330,988 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens H1;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001138,GEO:GSM849357;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJB_rep1_1_ENCSR000CJB_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analys | Embryo | Embryonic | ENCODE H1-hESC (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJB] [Life stage: Embryonic] |
| NGEN002440 | ENCODE | Download | 22,607 | 2,279,677 | transcription start sites | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJL | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,070,459 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM849334,UCSC-ENCODE-hg19:wgEncodeEH001148;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJL_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digest | Digestive | Child | ENCODE HepG2 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJL] [Life stage: Child] |
| NGEN002474 | ENCODE | Download | 53 | 2,138 | transcription start sites | hg19 | Dermal papilla cell | Primary cell | CL:0000346 | Hair Follicle | ENCSR000CKI | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 1,438 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens hair follicle dermal papilla cell female adult (47 years) and female adult (70 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002743,GEO:GSM979638;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKI_rep1_1_ENCSR000CKI_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=hair follicle dermal papil | Integumentary | Adult | ENCODE Dermal papilla cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKI] [Life stage: Adult] |
| NGEN002539 | ENCODE | Download | 17,374 | 1,481,293 | transcription start sites | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CIM | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 977,727 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000333,GEO:GSM849338;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CIM_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune syst | Cardiovascular | Adult | ENCODE K562 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Life stage: Adult] |
| NGEN002625 | ENCODE | Download | 13,024 | 894,755 | transcription start sites | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKT | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 744,167 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002754,GEO:GSM979656;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKT_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_b | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Life stage: Embryonic] |
| NGEN002630 | ENCODE | Download | 11,139 | 1,746,607 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKS | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 294,424 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM979659,UCSC-ENCODE-hg19:wgEncodeEH002753;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKS_rep1_1_ENCSR000CKS_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKS] [Life stage: Embryonic] |
| NGEN002663 | ENCODE | Download | 100 | 4,407 | transcription start sites | hg19 | Epithelial cell | Primary cell | CL:0002577 | Placenta | ENCSR000CKM | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 2,614 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979642,UCSC-ENCODE-hg19:wgEncodeEH002747;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKM_rep1_1_ENCSR000CKM_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=placental epithelial cell;ENCODE_cell_slims=epithelial | Placental | Newborn | ENCODE Epithelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKM] [Life stage: Newborn] |
| NGEN002716 | ENCODE | Download | 7,324 | 392,611 | transcription start sites | hg19 | Osteoblast | Primary cell | CL:0000062 | Bone | ENCSR000CKK | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 425,337 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002745,GEO:GSM979640;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKK_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_sl | Skeletal | Adult | ENCODE Osteoblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Life stage: Adult] |
| NGEN002769 | ENCODE | Download | 7,651 | 444,285 | transcription start sites | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CKU | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 466,888 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens MCF-7 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002755,GEO:GSM979657;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKU_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,inte | Reproductive | Adult | ENCODE MCF-7 (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKU] [Life stage: Adult] |
| NGEN002777 | ENCODE | Download | 17,456 | 1,454,302 | transcription start sites | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKR | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,026,876 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM979658,UCSC-ENCODE-hg19:wgEncodeEH002752;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKR_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respirat | Respiratory | Embryonic | ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Life stage: Embryonic] |
| NGEN002915 | ENCODE | Download | 114 | 3,278 | transcription start sites | hg19 | Endothelial cell | Primary cell | CL:0002545 | Blood Vessel | ENCSR000CKG | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 3,251 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens thoracic aorta endothelial cell female adult (22 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979636,UCSC-ENCODE-hg19:wgEncodeEH002741;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKG_rep1_1_ENCSR000CKG_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=thoracic aorta endothelial cel | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKG] [Life stage: Adult] |
| NGEN002965 | ENCODE | Download | 16,703 | 1,120,309 | transcription start sites | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CJZ | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 971,794 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001679,GEO:GSM849349;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJZ_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJZ] [Life stage: Adult] |
| NGEN003098 | ENCODE | Download | 5,555 | 458,768 | transcription start sites | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000CKB | 3, 4 | 3_1 ,4_1 | Not applicable | CAGE-Seq | bed idr_peak | 147,694 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens A549 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002736,GEO:GSM979632;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKB_rep3_1_ENCSR000CKB_rep4_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;EN | Respiratory | Adult | ENCODE A549 (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKB] [Life stage: Adult] |
| NGEN003101 | ENCODE | Download | 10,898 | 742,107 | transcription start sites | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLC | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 696,715 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM979646,UCSC-ENCODE-hg19:wgEncodeEH002763;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_bio | Nervous | Child | ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLC] [Life stage: Child] |
| NGEN003152 | ENCODE | Download | 43,905 | 6,450,080 | transcription start sites | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000CKC | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,895,460 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens A549 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM979633,UCSC-ENCODE-hg19:wgEncodeEH002737;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKC_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term | Respiratory | Adult | ENCODE A549 (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKC] [Life stage: Adult] |
| NGEN003181 | ENCODE | Download | 8,201 | 484,153 | transcription start sites | hg19 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000CJQ | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 399,336 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens keratinocyte cytosolic fraction female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849366,UCSC-ENCODE-hg19:wgEncodeEH001153;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJQ_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integument | Integumentary | Unknown | ENCODE Keratinocyte (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJQ] [Life stage: Unknown] |
| NGEN003237 | ENCODE | Download | 5,921 | 445,250 | transcription start sites | hg19 | Skeletal muscle satellite cell | Primary cell | CL:0000594 | Skeletal Muscle | ENCSR000CLD | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 156,657 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens skeletal muscle satellite cell female adult (64 years) and male adult (21 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979653,UCSC-ENCODE-hg19:wgEncodeEH002764;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLD_rep1_1_ENCSR000CLD_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=skeletal muscle satellite cell; | Muscular | Adult | ENCODE Skeletal muscle satellite cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CLD] [Life stage: Adult] |
| NGEN003310 | ENCODE | Download | 8,385 | 458,758 | transcription start sites | hg19 | Fibroblast | Primary cell | CL:0002558 | Embryo | ENCSR000CKP | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 489,925 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002750,GEO:GSM979660;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKP_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of villous mesenchyme;ENCODE_cell_slims=fibroblast,co | Embryo | Newborn | ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKP] [Life stage: Newborn] |
| NGEN003357 | ENCODE | Download | 15,288 | 1,113,835 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKT | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 842,709 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002754,GEO:GSM979656;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKT_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE_b | Respiratory | Embryonic | ENCODE IMR-90 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKT] [Life stage: Embryonic] |
| NGEN003362 | ENCODE | Download | 35,559 | 4,020,491 | transcription start sites | hg38 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLB | 3 | 3_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,591,352 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002762,GEO:GSM979647;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLB_rep3_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous | Nervous | Child | ENCODE SK-N-SH (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLB] [Life stage: Child] |
| NGEN003406 | ENCODE | Download | 5,227 | 268,037 | transcription start sites | hg19 | Mesenchymal stem cell | Stem cell | CL:0002568 | Connective Tissue | ENCSR000CLG | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 296,139 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens mesenchymal stem cell of Wharton's jelly female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979650,UCSC-ENCODE-hg19:wgEncodeEH002767;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLG_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=mesenchymal stem cell of Wharton's jelly;ENCODE_cell_sli | Skeletal | Newborn | ENCODE Mesenchymal stem cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLG] [Life stage: Newborn] |
| NGEN003413 | ENCODE | Download | 16,225 | 1,147,651 | transcription start sites | hg38 | AG04450 | Cell line | EFO:0006270 | Lung | ENCSR000CJW | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 946,700 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens AG04450;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 12 weeks;Reference=NR;External_resources=GEO:GSM849358,UCSC-ENCODE-hg19:wgEncodeEH001159;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJW_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=AG04450;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;ENCODE | Respiratory | Embryonic | ENCODE AG04450 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJW] [Life stage: Embryonic] |
| NGEN003415 | ENCODE | Download | 14,993 | 1,201,861 | transcription start sites | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CIM | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 879,423 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000333,GEO:GSM849338;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CIM_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune syst | Cardiovascular | Adult | ENCODE K562 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIM] [Life stage: Adult] |
| NGEN003425 | ENCODE | Download | 1,152 | 41,152 | transcription start sites | hg38 | Epithelial cell | Primary cell | CL:0002577 | Placenta | ENCSR000CKM | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 52,985 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979642,UCSC-ENCODE-hg19:wgEncodeEH002747;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=placental epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_syst | Placental | Newborn | ENCODE Epithelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKM] [Life stage: Newborn] |
| NGEN003451 | ENCODE | Download | 18,364 | 1,481,644 | transcription start sites | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CKA | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,025,714 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001680,GEO:GSM849368;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CKA_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_syn | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKA] [Life stage: Adult] |
| NGEN003452 | ENCODE | Download | 10,241 | 862,743 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CJU | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 263,889 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001157,GEO:GSM849362;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJU_rep1_1_ENCSR000CJU_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastom | Nervous | Child | ENCODE SK-N-SH (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJU] [Life stage: Child] |
| NGEN003470 | ENCODE | Download | 11,649 | 788,682 | transcription start sites | hg19 | BJ | Cell line | EFO:0002779 | Connective Tissue | ENCSR000CJX | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 620,054 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens BJ;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001160,GEO:GSM849328;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJX_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=BJ;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms= | Skeletal | Newborn | ENCODE BJ (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJX] [Life stage: Newborn] |
| NGEN003524 | ENCODE | Download | 3,046 | 219,302 | transcription start sites | hg19 | Melanocyte | Primary cell | CL:1000458 | Skin | ENCSR000CKZ | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 76,314 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979649,UCSC-ENCODE-hg19:wgEncodeEH002760;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKZ_rep1_1_ENCSR000CKZ_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=melanocyte of skin;ENCODE_cell_slims=melano | Integumentary | Adult | ENCODE Melanocyte (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKZ] [Life stage: Adult] |
| NGEN003534 | ENCODE | Download | 19,078 | 1,524,426 | transcription start sites | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJM | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,069,500 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001149,GEO:GSM849335;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJM_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocr | Digestive | Child | ENCODE HepG2 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJM] [Life stage: Child] |
| NGEN003656 | ENCODE | Download | 16,856 | 1,502,548 | transcription start sites | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000CIV | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 741,009 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000342,GEO:GSM849350;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CIV_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endotheli | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIV] [Life stage: Newborn] |
| NGEN003662 | ENCODE | Download | 4,984 | 264,634 | transcription start sites | hg19 | Endothelial cell | Primary cell | CL:0002543 | Blood Vessel | ENCSR000CKN | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 293,283 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979645,UCSC-ENCODE-hg19:wgEncodeEH002748;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKN_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=vein endothelial cell;ENCODE_cell_slims=endothelial cell,ep | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKN] [Life stage: Adult] |
| NGEN003698 | ENCODE | Download | 9,100 | 1,505,636 | transcription start sites | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000CKC | 3, 4 | 3_1 ,4_1 | Not applicable | CAGE-Seq | bed idr_peak | 243,298 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens A549 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM979633,UCSC-ENCODE-hg19:wgEncodeEH002737;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKC_rep3_1_ENCSR000CKC_rep4_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCO | Respiratory | Adult | ENCODE A549 (repl. 3, 4) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKC] [Life stage: Adult] |
| NGEN003706 | ENCODE | Download | 18,002 | 1,420,864 | transcription start sites | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CKA | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 967,297 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001680,GEO:GSM849368;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CKA_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_syn | Cardiovascular | Adult | ENCODE GM12878 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKA] [Life stage: Adult] |
| NGEN003753 | ENCODE | Download | 20,214 | 1,711,390 | transcription start sites | hg19 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR000CJB | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,075,249 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens H1;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001138,GEO:GSM849357;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJB_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE3 | Embryo | Embryonic | ENCODE H1-hESC (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJB] [Life stage: Embryonic] |
| NGEN003875 | ENCODE | Download | 7,145 | 399,099 | transcription start sites | hg19 | Fibroblast | Primary cell | CL:0002551 | Skin | ENCSR000CKX | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 411,000 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002758,GEO:GSM979662;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKX_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connec | Integumentary | Adult | ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKX] [Life stage: Adult] |
| NGEN003881 | ENCODE | Download | 6,591 | 590,807 | transcription start sites | hg38 | B cell | Primary cell | CL:0000236 | Immune | ENCSR000CKD | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 172,212 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979634,UCSC-ENCODE-hg19:wgEncodeEH002738;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKD_rep1_1_ENCSR000CKD_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoiet | Lymphatic | Adult | ENCODE B cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKD] [Life stage: Adult] |
| NGEN003907 | ENCODE | Download | 25,461 | 2,460,219 | transcription start sites | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CKV | 3 | 3_1 | Not applicable | CAGE-Seq | bed tss_peak | 1,056,080 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens MCF-7 nuclear fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSM979654,UCSC-ENCODE-hg19:wgEncodeEH002756;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKV_rep3_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integu | Reproductive | Adult | ENCODE MCF-7 (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKV] [Life stage: Adult] |
| NGEN003929 | ENCODE | Download | 9,082 | 748,383 | transcription start sites | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJK | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 234,797 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM849343,UCSC-ENCODE-hg19:wgEncodeEH001147;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exo | Digestive | Child | ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJK] [Life stage: Child] |
| NGEN003956 | ENCODE | Download | 10,557 | 911,904 | transcription start sites | hg19 | AG04450 | Cell line | EFO:0006270 | Lung | ENCSR000CJW | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 274,082 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens AG04450;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 12 weeks;Reference=NR;External_resources=GEO:GSM849358,UCSC-ENCODE-hg19:wgEncodeEH001159;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJW_rep1_1_ENCSR000CJW_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=AG04450;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respirat | Respiratory | Embryonic | ENCODE AG04450 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJW] [Life stage: Embryonic] |
| NGEN003961 | ENCODE | Download | 9,526 | 971,726 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKR | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 249,907 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM979658,UCSC-ENCODE-hg19:wgEncodeEH002752;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKR_rep1_1_ENCSR000CKR_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_syst | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKR] [Life stage: Embryonic] |
| NGEN003962 | ENCODE | Download | 578 | 14,378 | transcription start sites | hg19 | Pericyte | Primary cell | CL:2000078 | Placenta | ENCSR000CKL | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 26,917 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens placental pericyte female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979643,UCSC-ENCODE-hg19:wgEncodeEH002746;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKL_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=placental pericyte;ENCODE_cell_slims=pericyte,connective tissue cell,hematopoi | Placental | Newborn | ENCODE Pericyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKL] [Life stage: Newborn] |
| NGEN003966 | ENCODE | Download | 5,350 | 385,559 | transcription start sites | hg38 | Fibroblast | Primary cell | CL:0002558 | Embryo | ENCSR000CKP | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 141,634 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of villous mesenchyme female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002750,GEO:GSM979660;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKP_rep1_1_ENCSR000CKP_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of villous mesenchyme;ENCODE_cell_sl | Embryo | Newborn | ENCODE Fibroblast (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKP] [Life stage: Newborn] |
| NGEN004012 | ENCODE | Download | 6,463 | 343,254 | transcription start sites | hg19 | Fibroblast | Primary cell | CL:0002547 | Blood Vessel | ENCSR000CKF | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 298,797 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of the aortic adventitia female adult (24 years) and male adult (47 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979637,UCSC-ENCODE-hg19:wgEncodeEH002740;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKF_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of the aortic adventitia;ENCODE_ | Cardiovascular | Adult | ENCODE Fibroblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKF] [Life stage: Adult] |
| NGEN004015 | ENCODE | Download | 3,051 | 200,589 | transcription start sites | hg38 | Endothelial cell | Primary cell | CL:0002543 | Blood Vessel | ENCSR000CKN | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 80,868 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens vein endothelial cell male adult (48 years) and male adult (52 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979645,UCSC-ENCODE-hg19:wgEncodeEH002748;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKN_rep1_1_ENCSR000CKN_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=vein endothelial cell;ENCODE_cell_slims=en | Cardiovascular | Adult | ENCODE Endothelial cell (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKN] [Life stage: Adult] |
| NGEN004022 | ENCODE | Download | 8,320 | 783,399 | transcription start sites | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000CKT | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 219,078 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens IMR-90;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002754,GEO:GSM979656;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKT_rep1_1_ENCSR000CKT_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respirator | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CKT] [Life stage: Embryonic] |
| NGEN004084 | ENCODE | Download | 16,399 | 1,214,046 | transcription start sites | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000CJJ | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 897,332 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HeLa-S3;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM849342,UCSC-ENCODE-hg19:wgEncodeEH001146;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosampl | Reproductive | Adult | ENCODE HeLa-S3 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJJ] [Life stage: Adult] |
| NGEN004128 | ENCODE | Download | 1,143 | 40,805 | transcription start sites | hg19 | Epithelial cell | Primary cell | CL:0002577 | Placenta | ENCSR000CKM | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 52,623 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens placental epithelial cell female newborn and male newborn;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979642,UCSC-ENCODE-hg19:wgEncodeEH002747;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKM_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=placental epithelial cell;ENCODE_cell_slims=epithelial cell;ENCODE_syst | Placental | Newborn | ENCODE Epithelial cell (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKM] [Life stage: Newborn] |
| NGEN004155 | ENCODE | Download | 7,653 | 385,785 | transcription start sites | hg19 | Fibroblast | Primary cell | CL:0002551 | Skin | ENCSR000CKX | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 440,812 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens fibroblast of dermis female adult (44 years) and female adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002758,GEO:GSM979662;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKX_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=fibroblast of dermis;ENCODE_cell_slims=fibroblast,connec | Integumentary | Adult | ENCODE Fibroblast (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKX] [Life stage: Adult] |
| NGEN004269 | ENCODE | Download | 8,162 | 459,447 | transcription start sites | hg38 | Osteoblast | Primary cell | CL:0000062 | Bone | ENCSR000CKK | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 501,403 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens osteoblast female adult (56 years) and male adult (62 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002745,GEO:GSM979640;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKK_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=osteoblast;ENCODE_cell_slims=connective tissue cell;ENCODE_system_sl | Skeletal | Adult | ENCODE Osteoblast (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKK] [Life stage: Adult] |
| NGEN004274 | ENCODE | Download | 9,035 | 349,405 | transcription start sites | hg19 | Melanocyte | Primary cell | CL:1000458 | Skin | ENCSR000CKY | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 403,954 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens melanocyte of skin male child (1 year) and male child (3 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002759,GEO:GSM979663;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKY_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=melanocyte of skin;ENCODE_cell_slims=melanocyte;ENCODE_system_sli | Integumentary | Child | ENCODE Melanocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKY] [Life stage: Child] |
| NGEN004289 | ENCODE | Download | 10,725 | 692,869 | transcription start sites | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000CJV | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 562,645 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens A549;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM849359,UCSC-ENCODE-hg19:wgEncodeEH001158;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJV_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 ce | Respiratory | Adult | ENCODE A549 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJV] [Life stage: Adult] |
| NGEN004342 | ENCODE | Download | 14,369 | 1,037,768 | transcription start sites | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000CJN | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 810,073 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens K562;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001150,GEO:GSM849365;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJN_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosamp | Cardiovascular | Adult | ENCODE K562 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJN] [Life stage: Adult] |
| NGEN004358 | ENCODE | Download | 9,013 | 739,355 | transcription start sites | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJK | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 232,971 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM849343,UCSC-ENCODE-hg19:wgEncodeEH001147;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJK_rep1_1_ENCSR000CJK_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exo | Digestive | Child | ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJK] [Life stage: Child] |
| NGEN004423 | ENCODE | Download | 8,841 | 356,299 | transcription start sites | hg38 | Melanocyte | Primary cell | CL:1000458 | Skin | ENCSR000CKZ | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 401,362 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens melanocyte of skin female adult (52 years) and male adult (55 years);Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM979649,UCSC-ENCODE-hg19:wgEncodeEH002760;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKZ_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=melanocyte of skin;ENCODE_cell_slims=melanocyte;ENCODE_syste | Integumentary | Adult | ENCODE Melanocyte (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKZ] [Life stage: Adult] |
| NGEN004456 | ENCODE | Download | 6,606 | 377,683 | transcription start sites | hg38 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CKU | 3 | 3_1 | Not applicable | CAGE-Seq | bed tss_peak | 419,961 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens MCF-7 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002755,GEO:GSM979657;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CKU_rep3_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,inte | Reproductive | Adult | ENCODE MCF-7 (repl. 3) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKU] [Life stage: Adult] |
| NGEN004539 | ENCODE | Download | 10,905 | 744,649 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLC | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 649,799 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM979646,UCSC-ENCODE-hg19:wgEncodeEH002763;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLC_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_bio | Nervous | Child | ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLC] [Life stage: Child] |
| NGEN004661 | ENCODE | Download | 12,746 | 1,229,785 | transcription start sites | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000CJM | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 326,934 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HepG2;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001149,GEO:GSM849335;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJM_rep1_1_ENCSR000CJM_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digest | Digestive | Child | ENCODE HepG2 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJM] [Life stage: Child] |
| NGEN004678 | ENCODE | Download | 16,396 | 1,212,403 | transcription start sites | hg38 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000CJJ | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 953,917 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens HeLa-S3;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM849342,UCSC-ENCODE-hg19:wgEncodeEH001146;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-03-23,2011-10-17;Submitted_track_name=ENCSR000CJJ_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosampl | Reproductive | Adult | ENCODE HeLa-S3 (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJJ] [Life stage: Adult] |
| NGEN004688 | ENCODE | Download | 6,853 | 672,740 | transcription start sites | hg38 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000CJO | 1, 2 | 1_1 ,2_1 | Not applicable | CAGE-Seq | bed idr_peak | 171,220 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens MCF-7;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSM849364,UCSC-ENCODE-hg19:wgEncodeEH001151;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJO_rep1_1_ENCSR000CJO_rep2_1_cage_idr.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integu | Reproductive | Adult | ENCODE MCF-7 (repl. 1, 2) CAGE-Seq transcription start sites (idr_peak) [Experiment: ENCSR000CJO] [Life stage: Adult] |
| NGEN004798 | ENCODE | Download | 11,695 | 754,987 | transcription start sites | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000CLA | 4 | 4_1 | Not applicable | CAGE-Seq | bed tss_peak | 699,196 | 11/2/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens SK-N-SH cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002761,GEO:GSM979648;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21;Submitted_track_name=ENCSR000CLA_rep4_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervou | Nervous | Child | ENCODE SK-N-SH (repl. 4) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CLA] [Life stage: Child] |
| NGEN004840 | ENCODE | Download | 20,870 | 530,922 | transcription start sites | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000CIR | 1 | 1_1 | Not applicable | CAGE-Seq | bed tss_peak | 748,017 | 9/26/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens GM12878 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000338,GEO:GSM849329;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CIR_rep1_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CIR] [Life stage: Adult] |
| NGEN004925 | ENCODE | Download | 13,636 | 884,863 | transcription start sites | hg38 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000CJP | 2 | 2_1 | Not applicable | CAGE-Seq | bed tss_peak | 801,253 | 8/4/2016 | 02/19/2019 | TSS | CAGE-Seq transcription start sites | Biosample_summary=Homo sapiens keratinocyte female;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM849367,UCSC-ENCODE-hg19:wgEncodeEH001152;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-12-22,2011-10-17;Submitted_track_name=ENCSR000CJP_rep2_1_cage_peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumental system;ENCODE_bi | Integumentary | Unknown | ENCODE Keratinocyte (repl. 2) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CJP] [Life stage: Unknown] |
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