Browse FILER
To select specific FILER datasets, use any of the filters below in any order:
Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGENCD5BW3DYHL | ENCODE | Download | 79,849 | 27,866,463 | IDR thresholded peaks | hg38 | Naive thymus-derived CD8+, alpha-beta T cell | Primary cell | CL:0000900 | Blood | ENCSR614JAG | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,767,946 | 10/08/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE187659;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-10-13;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=naive thymus-derived CD8-positive, alpha-beta T cell;ENC | Cardiovascular | Adult | ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR614JAG] [Life stage: Adult] |
| NGENC4P2SI32WC | ENCODE | Download | 199,301 | 60,658,564 | pseudoreplicated peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR483RKN | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,064,124 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170214;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-07-21;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_bi | Cardiovascular | Adult | ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR483RKN] [Life stage: Adult] |
| NGENCBSUTVYWJF | ENCODE | Download | 150,097 | 49,765,393 | pseudoreplicated peaks | hg38 | HG03280 | Cell line | EFO:0010875 | Blood | ENCSR554WGQ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,850,686 | 01/22/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens HG03280;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172669;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HG03280;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38; | Cardiovascular | Adult | ENCODE HG03280 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR554WGQ] [Life stage: Adult] |
| NGENC66BM46JXU | ENCODE | Download | 269,964 | 102,866,860 | pseudoreplicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR913OWV | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,734,554 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 55 years;Reference=PMID:35045337;External_resources=GEO:GSE188100;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_s | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Life stage: Adult] |
| NGENCV5IZIJXNO | ENCODE | Download | 163,742 | 53,846,432 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR637OPZ | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,234,444 | 10/08/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE187710;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-10-13;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_ | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR637OPZ] [Life stage: Adult] |
| NGENC7ZWVWL4QH | ENCODE | Download | 115,379 | 39,794,589 | pseudoreplicated peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,979,065 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens DND-41;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=NR;External_resources=GEO:GSE172903;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonym | Cardiovascular | Child | ENCODE DND-41 (repl. 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Child] |
| NGENCTHKNVQFAI | ENCODE | Download | 143,932 | 49,344,886 | pseudoreplicated peaks | hg38 | Gastroesophageal sphincter | Tissue | UBERON:0004550 | Digestive | ENCSR670REK | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,766,686 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170959;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-15;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=gastroesophageal sphincter;ENCODE_cell_slims=NR;ENCOD | Digestive | Adult | ENCODE Gastroesophageal sphincter (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR670REK] [Life stage: Adult] |
| NGENCPCLIYD72A | ENCODE | Download | 26,034 | 9,828,604 | IDR thresholded peaks | hg38 | Cerebellum | Tissue | UBERON:0002037 | Brain | ENCSR802GEV | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 575,729 | 05/12/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 20 years;Reference=NR;External_resources=GEO:GSE170195;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2017-10-09;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=cerebellum;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCO | Nervous | Adult | ENCODE Cerebellum (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802GEV] [Life stage: Adult] |
| NGENCI2BRRHFIY | ENCODE | Download | 215,545 | 81,915,379 | replicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR516YAD | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,380,448 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 47 years;Reference=PMID:35045337;External_resources=GEO:GSE187543;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=cent | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR516YAD] [Life stage: Adult] |
| NGENCXWF2UQUFB | ENCODE | Download | 153,851 | 53,833,355 | IDR thresholded peaks | hg38 | NCI-H929 | Cell line | EFO:0001221 | Immune | ENCSR382LBS | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,329,683 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens NCI-H929;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE172886;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal syst | Lymphatic | Adult | ENCODE NCI-H929 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Life stage: Adult] |
| NGENCQEGCZPGAE | ENCODE | Download | 220,436 | 73,262,612 | pseudoreplicated peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR095QNB | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,606,200 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE170245;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_ter | Cardiovascular | Adult | ENCODE GM12878 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Life stage: Adult] |
| NGENCVKXGOSZEL | ENCODE | Download | 130,088 | 45,904,411 | conservative IDR thresholded peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR042AWH | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,840,528 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170012;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine sy | Digestive | Child | ENCODE HepG2 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR042AWH] [Life stage: Child] |
| NGENCC4CIT5FBQ | ENCODE | Download | 262,519 | 95,145,152 | pseudoreplicated peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR291GJU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,802,712 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170251;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENC | Digestive | Child | ENCODE HepG2 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR291GJU] [Life stage: Child] |
| NGENCXGLK5Z5MI | ENCODE | Download | 112,098 | 37,050,621 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta effector memory cell | Primary cell | NTR:0000668 | Blood | ENCSR335XRZ | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,919,032 | 10/07/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE215706;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-11-16;S | Cardiovascular | Adult | ENCODE CD8+ alpha-beta effector memory cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR335XRZ] [Life stage: Adult] |
| NGENCYMDIV2J72 | ENCODE | Download | 138,840 | 47,120,611 | IDR thresholded peaks | hg38 | HG03354 | Cell line | EFO:0010877 | Blood | ENCSR025MEO | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,031,377 | 01/26/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens HG03354;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172623;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HG03354;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE HG03354 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR025MEO] [Life stage: Adult] |
| NGENCFVJ6WYVRS | ENCODE | Download | 108,093 | 34,547,902 | pseudoreplicated peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR220ASC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,769,973 | 09/29/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE114202;Project=GGR;Award=U01HG007900;Experiment_date_released=2018-04-23;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=EN | Respiratory | Adult | ENCODE A549 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Life stage: Adult] |
| NGENCXXIFOZADX | ENCODE | Download | 197,819 | 64,338,480 | pseudoreplicated peaks | hg38 | HG02885 | Cell line | EFO:0010854 | Blood | ENCSR621JYI | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,988,925 | 02/02/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens HG02885;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172788;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HG02885;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38; | Cardiovascular | Adult | ENCODE HG02885 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR621JYI] [Life stage: Adult] |
| NGENCCSV27ZQZM | ENCODE | Download | 76,833 | 27,816,243 | IDR thresholded peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,720,240 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens DND-41;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=NR;External_resources=GEO:GSE172903;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonym | Cardiovascular | Child | ENCODE DND-41 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Child] |
| NGENC5I2FQGF3H | ENCODE | Download | 75,496 | 25,661,788 | IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR305QTE | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,707,554 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 47 years;Reference=NR;External_resources=GEO:GSE187426;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_sys | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR305QTE] [Life stage: Adult] |
| NGENCWXYW44ODT | ENCODE | Download | 86,706 | 31,244,263 | IDR thresholded peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR535NOD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,018,175 | 04/20/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE94193;Project=GGR;Award=U01HG007910;Experiment_date_released=2017-01-19;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=dendritic cell;ENCODE_cell_slims=leukocyte,hematopoietic cell;ENCODE_system_slims= | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535NOD] [Life stage: Unknown] |
| NGENCE3I5CNJBU | ENCODE | Download | 223,402 | 73,116,125 | pseudoreplicated peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR522FGI | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,818,551 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE170470;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR522FGI] [Life stage: Adult] |
| NGENC2WEDGGBST | ENCODE | Download | 275,450 | 93,118,849 | pseudoreplicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 2 | 2_1, 2_2 | Not applicable | ATAC-seq | bed narrowPeak | 7,418,909 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170821;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosa | Digestive | Adult | ENCODE Mucosa (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult] |
| NGENCSUQWPAGDM | ENCODE | Download | 41,654 | 16,419,626 | IDR thresholded peaks | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR694OWY | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 901,970 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 26 years;Reference=NR;External_resources=GEO:GSE215622;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-16;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune system;ENCODE_biosample | Lymphatic | Adult | ENCODE Spleen (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR694OWY] [Life stage: Adult] |
| NGENC7S6EWXSGJ | ENCODE | Download | 94,684 | 32,124,117 | IDR thresholded peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR260LAN | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,083,888 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE215625;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=naive thymus-derived CD4-positive, alpha-beta T cell | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR260LAN] [Life stage: Adult] |
| NGENCK5FGBZYSN | ENCODE | Download | 208,215 | 69,795,892 | pseudoreplicated peaks | hg38 | Psoas muscle | Tissue | UBERON:0008450 | Skeletal Muscle | ENCSR886VCC | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,556,763 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 47 years;Reference=NR;External_resources=GEO:GSE170491;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=psoas muscle;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_ | Muscular | Adult | ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR886VCC] [Life stage: Adult] |
| NGENCJN6DSIGBZ | ENCODE | Download | 70,080 | 23,312,763 | pseudoreplicated peaks | hg38 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR831KAH | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,772,942 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE172747;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=tibial nerve;ENCODE_cell_slims=NR;ENCODE_system_slims=peripheral ne | Nervous | Adult | ENCODE Tibial nerve (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR831KAH] [Life stage: Adult] |
| NGENCPZOXUPD64 | ENCODE | Download | 87,507 | 30,205,381 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | CL:0000907 | Blood | ENCSR165FYY | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,275,897 | 10/07/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE215647;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=central memory CD8-positive, alpha-beta T cell;ENCODE_cell_sli | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165FYY] [Life stage: Adult] |
| NGENCZMKZAEKMG | ENCODE | Download | 158,637 | 53,303,342 | pseudoreplicated peaks | hg38 | GM19023 | Cell line | EFO:0010835 | Blood | ENCSR512FHU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,964,910 | 02/01/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM19023;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172598;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM19023;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38; | Cardiovascular | Adult | ENCODE GM19023 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR512FHU] [Life stage: Adult] |
| NGENCNBLQ2BH2I | ENCODE | Download | 57,282 | 22,112,503 | IDR thresholded peaks | hg38 | HG03060 | Cell line | EFO:0010863 | Blood | ENCSR470ZNM | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,336,995 | 02/02/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens HG03060;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172538;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HG03060;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE HG03060 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR470ZNM] [Life stage: Adult] |
| NGENCQOK7XCW62 | ENCODE | Download | 93,340 | 33,683,563 | IDR thresholded peaks | hg38 | GM21360 | Cell line | CLO:0015908 | Blood | ENCSR105SCQ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,086,459 | 01/14/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM21360;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172775;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM21360;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM21360;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM21360 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR105SCQ] [Life stage: Adult] |
| NGENC63WUUJAIS | ENCODE | Download | 51,568 | 19,241,343 | IDR thresholded peaks | hg38 | GM19468 | Cell line | CLO:0026875 | Blood | ENCSR635AIF | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,194,345 | 02/01/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM19468;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172829;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM19468;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM19468;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM19468 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR635AIF] [Life stage: Adult] |
| NGENC272PNYD2G | ENCODE | Download | 104,308 | 32,706,490 | pseudoreplicated peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR956DNB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,716,080 | 03/02/2022 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens K562;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE215595;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2022-04-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synony | Cardiovascular | Adult | ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Life stage: Adult] |
| NGENC4ZXC5GKDE | ENCODE | Download | 158,195 | 52,946,954 | pseudoreplicated peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 1, 2, 3 | 1_1, 2_1, 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,028,378 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens DND-41;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=NR;External_resources=GEO:GSE172903;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=DND-41;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_syno | Cardiovascular | Child | ENCODE DND-41 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Child] |
| NGENCKWHDKRPQS | ENCODE | Download | 190,616 | 69,067,317 | IDR thresholded peaks | hg38 | Liver lobe | Tissue | UBERON:0001114 | Liver | ENCSR607BTF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,278,034 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 45 years;Reference=NR;External_resources=GEO:GSE170876;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=right lobe of liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,diges | Digestive | Adult | ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR607BTF] [Life stage: Adult] |
| NGENCVYGN6HKDM | ENCODE | Download | 83,853 | 30,118,660 | IDR thresholded peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR204SMO | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 1,892,701 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 46 years;Reference=NR;External_resources=GEO:GSE169772;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory syste | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR204SMO] [Life stage: Adult] |
| NGENCZCK6WUZVV | ENCODE | Download | 51,843 | 18,670,853 | IDR thresholded peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR290AUK | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,237,860 | 04/20/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE94178;Project=GGR;Award=U01HG007910;Experiment_date_released=2017-01-19;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=dendritic cell;ENCODE_cell_slims=leukocyte,hematopoietic cell;ENCODE_system_slims= | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR290AUK] [Life stage: Unknown] |
| NGENCSERQZ4EV2 | ENCODE | Download | 107,702 | 39,433,179 | IDR thresholded peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR053SGP | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 2,445,676 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE170073;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory syste | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR053SGP] [Life stage: Adult] |
| NGENCIWCTIMM2R | ENCODE | Download | 127,863 | 43,527,632 | pseudoreplicated peaks | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR078EBD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,289,684 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE172685;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-15;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=spleen;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system,immune s | Lymphatic | Adult | ENCODE Spleen (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR078EBD] [Life stage: Adult] |
| NGENCNU45P3V6Q | ENCODE | Download | 111,078 | 43,194,959 | IDR thresholded peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR373NFA | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,521,868 | 10/07/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 50 years;Reference=NR;External_resources=GEO:GSE187335;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-10-13;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_ | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR373NFA] [Life stage: Adult] |
| NGENCBLHX2LTSA | ENCODE | Download | 138,676 | 53,777,315 | IDR thresholded peaks | hg38 | NCI-H929 | Cell line | EFO:0001221 | Immune | ENCSR382LBS | 1, 3 | 1_1 ,3_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,137,530 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens NCI-H929;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE172886;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=NCI-H929;ENCODE_cell_slims=B cell,cancer cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system,skeletal system;ENCOD | Lymphatic | Adult | ENCODE NCI-H929 (repl. 1, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Life stage: Adult] |
| NGENC2BK7IVMFF | ENCODE | Download | 82,865 | 31,515,879 | conservative IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR808HWS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,861,736 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Homo sapiens natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE188031;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult] |
| NGENC22HIZYL32 | ENCODE | Download | 162,963 | 50,728,744 | replicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR863TVR | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,265,581 | 10/08/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 33 years;Reference=NR;External_resources=GEO:GSE215522;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferre | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Life stage: Adult] |
| NGENCHGO427OYS | ENCODE | Download | 205,179 | 68,142,329 | pseudoreplicated peaks | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR310RJN | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,379,055 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE170318;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;E | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR310RJN] [Life stage: Adult] |
| NGENCA6PQ66MNQ | ENCODE | Download | 116,659 | 40,534,561 | pseudoreplicated peaks | hg38 | GM18499 | Cell line | CLO:0024933 | Blood | ENCSR700HPA | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,104,903 | 02/01/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM18499;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE173011;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM18499;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM18499;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM=N | Cardiovascular | Adult | ENCODE GM18499 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR700HPA] [Life stage: Adult] |
| NGENCS3QWQEASJ | ENCODE | Download | 107,758 | 37,304,086 | pseudoreplicated peaks | hg38 | Cardiac septum | Tissue | UBERON:0002099 | Heart | ENCSR167SYF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 2,733,637 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE215650;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-16;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=cardiac septum;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_bios | Cardiovascular | Adult | ENCODE Cardiac septum (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR167SYF] [Life stage: Adult] |
| NGENC5IFHS5VSE | ENCODE | Download | 75,844 | 27,424,157 | IDR thresholded peaks | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR846VPV | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 1,700,840 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 66 years;Reference=NR;External_resources=GEO:GSE172783;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory syste | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VPV] [Life stage: Adult] |
| NGENCMVTJJMCIC | ENCODE | Download | 129,854 | 46,917,409 | IDR thresholded peaks | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR200OML | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,844,128 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSE169767;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENC | Respiratory | Embryonic | ENCODE IMR-90 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR200OML] [Life stage: Embryonic] |
| NGENCKO3QADK6G | ENCODE | Download | 113,044 | 36,700,542 | pseudoreplicated peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR679NRJ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,940,854 | 04/20/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE94206;Project=GGR;Award=U01HG007910;Experiment_date_released=2017-01-19;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dendritic cell;ENCODE_cell_slims=leukocyte,hematopoietic cell;ENCODE_system_slims=im | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR679NRJ] [Life stage: Unknown] |
| NGENCXFX7JU5HY | ENCODE | Download | 254,048 | 89,201,309 | pseudoreplicated peaks | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR200OML | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,406,661 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSE169767;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENC | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR200OML] [Life stage: Embryonic] |
| NGENCLNUCEOD4V | ENCODE | Download | 147,212 | 51,628,166 | pseudoreplicated peaks | hg38 | T-cell | Primary cell | NTR:0000537 | Blood | ENCSR558ZSN | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,812,669 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 21 years;Reference=NR;External_resources=GEO:GSE187697;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_te | Cardiovascular | Adult | ENCODE T-cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR558ZSN] [Life stage: Adult] |
| NGENCBZHF2NGZN | ENCODE | Download | 277,677 | 111,731,013 | replicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR913OWV | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 7,135,083 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 55 years;Reference=PMID:35045337;External_resources=GEO:GSE188100;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=cen | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Life stage: Adult] |
| NGENCR2PJ4D2CN | ENCODE | Download | 159,905 | 64,171,230 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR709QRD | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,433,924 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:35045337;External_resources=GEO:GSE187790;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=cen | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Life stage: Adult] |
| NGENCSBU3IUNYR | ENCODE | Download | 73,627 | 27,375,278 | IDR thresholded peaks | hg38 | HG03097 | Cell line | EFO:0010867 | Blood | ENCSR608KJD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,659,128 | 02/04/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens HG03097;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172760;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HG03097;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE HG03097 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR608KJD] [Life stage: Adult] |
| NGENCMS37BPSTU | ENCODE | Download | 160,319 | 53,326,108 | pseudoreplicated peaks | hg38 | Psoas muscle | Tissue | UBERON:0008450 | Skeletal Muscle | ENCSR890DWH | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,239,652 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170518;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=psoas muscle;ENCODE_cell_slims=NR;ENCODE_system_slims=musculature;ENCODE_biosample_term_ | Muscular | Adult | ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR890DWH] [Life stage: Adult] |
| NGENCKHC6XFKMP | ENCODE | Download | 110,781 | 38,383,917 | IDR thresholded peaks | hg38 | GM21390 | Cell line | CLO:0015884 | Blood | ENCSR024WOD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,460,830 | 01/26/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM21390;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172620;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM21390;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM21390;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM21390 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024WOD] [Life stage: Adult] |
| NGENCIBECJXENY | ENCODE | Download | 232,401 | 85,023,522 | pseudoreplicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR065CER | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,787,973 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 49 years;Reference=PMID:35045337;External_resources=GEO:GSE187257;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_syst | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR065CER] [Life stage: Adult] |
| NGENCT22I2L3W6 | ENCODE | Download | 95,842 | 33,955,097 | IDR thresholded peaks | hg38 | GM21576 | Cell line | CLO:0014097 | Blood | ENCSR122NDR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,157,990 | 01/22/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM21576;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172796;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM21576;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM21576;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM21576 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR122NDR] [Life stage: Adult] |
| NGENCPIWNIEEY5 | ENCODE | Download | 216,179 | 73,818,500 | pseudoreplicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,644,931 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170821;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosa | Digestive | Adult | ENCODE Mucosa (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult] |
| NGENCYKPGEZ3QN | ENCODE | Download | 119,015 | 47,932,722 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR709QRD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,577,834 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:35045337;External_resources=GEO:GSE187790;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=central | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Life stage: Adult] |
| NGENCHJXR4TGL2 | ENCODE | Download | 163,882 | 52,581,602 | conservative IDR thresholded peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,496,876 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Homo sapiens HCT116;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE170407;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_syno | Digestive | Adult | ENCODE HCT116 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Adult] |
| NGENCNOVE57TVS | ENCODE | Download | 79,559 | 28,114,958 | IDR thresholded peaks | hg38 | Memory B cell | Primary cell | NTR:0000662 | Blood | ENCSR302PTB | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,754,128 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens stimulated activated memory B cell male adult (40 years) treated with 10 _g/mL anti-IgM for 72 hours, 1 _g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE187422;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_d | Cardiovascular | Adult | ENCODE Memory B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Life stage: Adult] |
| NGENCL4WZD2PTW | ENCODE | Download | 147,284 | 48,820,623 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000502 | Blood | ENCSR477YSU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,880,562 | 10/08/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187942;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-10-13;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_defa | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR477YSU] [Life stage: Adult] |
| NGENCURRQUMDZY | ENCODE | Download | 204,450 | 83,614,965 | IDR thresholded peaks | hg38 | Liver lobe | Tissue | UBERON:0001114 | Liver | ENCSR685ZMP | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,763,630 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170971;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=right lobe of liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,dig | Digestive | Adult | ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685ZMP] [Life stage: Adult] |
| NGENCAOOENUNLC | ENCODE | Download | 88,688 | 31,322,192 | IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR044ATC | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,001,003 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE187174;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=natural killer cell;ENCODE_cell_slims=NK cell,leukocyte,hematopoietic cell;ENCODE_syste | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR044ATC] [Life stage: Adult] |
| NGENC2T36254UF | ENCODE | Download | 192,391 | 78,978,542 | IDR thresholded peaks | hg38 | Lung | Tissue | UBERON:0002168 | Lung | ENCSR682ETE | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,351,295 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 16 years;Reference=NR;External_resources=GEO:GSE170968;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=left lung;ENCODE_cell_slims=NR;ENCODE_system_slims=respiratory system;ENCODE_biosample_ter | Respiratory | Child | ENCODE Lung (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR682ETE] [Life stage: Child] |
| NGENC6TQF24SCU | ENCODE | Download | 115,442 | 40,332,528 | IDR thresholded peaks | hg38 | HG02852 | Cell line | EFO:0010851 | Blood | ENCSR368FYV | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,535,913 | 01/22/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens HG02852;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172846;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HG02852;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE HG02852 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR368FYV] [Life stage: Adult] |
| NGENCZUMFTJAOW | ENCODE | Download | 90,147 | 31,048,909 | IDR thresholded peaks | hg38 | Memory B cell | Primary cell | NTR:0000662 | Blood | ENCSR302PTB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,976,525 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens stimulated activated memory B cell male adult (40 years) treated with 10 _g/mL anti-IgM for 72 hours, 1 _g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE187422;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_d | Cardiovascular | Adult | ENCODE Memory B cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Life stage: Adult] |
| NGENC7TH5GOMBO | ENCODE | Download | 255,796 | 89,520,629 | pseudoreplicated peaks | hg38 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR499ASS | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,511,186 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens PC-3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE170337;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=PC3, | Reproductive | Adult | ENCODE PC-3 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499ASS] [Life stage: Adult] |
| NGENCA7O6EZEOT | ENCODE | Download | 202,196 | 66,418,219 | pseudoreplicated peaks | hg38 | GM18867 | Cell line | CLO:0026250 | Blood | ENCSR492FJO | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,182,865 | 02/04/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM18867;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172566;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM18867;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM18867;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM=N | Cardiovascular | Adult | ENCODE GM18867 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR492FJO] [Life stage: Adult] |
| NGENCJR7SX2LV4 | ENCODE | Download | 198,597 | 79,190,026 | conservative IDR thresholded peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR291GJU | 1, 2, 3 | 1_1, 2_1, 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,425,691 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170251;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_bios | Digestive | Child | ENCODE HepG2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR291GJU] [Life stage: Child] |
| NGENCQR7G5IFBP | ENCODE | Download | 73,251 | 25,503,003 | IDR thresholded peaks | hg38 | Naive B cell | Primary cell | CL:0000788 | Blood | ENCSR685OFR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,673,129 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=NR;External_resources=GEO:GSE188165;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=naive B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune | Cardiovascular | Adult | ENCODE Naive B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685OFR] [Life stage: Adult] |
| NGENCQIDSYZGYO | ENCODE | Download | 537 | 183,687 | IDR thresholded peaks | hg38 | T-cell | Primary cell | CL:0000084 | Immune | ENCSR032MEH | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 11,993 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens T-cell male adult (43 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE215517;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=T-cell;ENCODE_cell_slims=hematopoietic cell,leukocyte,T cell;ENCODE_system_slims=immune system;ENCODE_ | Lymphatic | Adult | ENCODE T-cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032MEH] [Life stage: Adult] |
| NGENCBDEPAM2JV | ENCODE | Download | 180,968 | 71,391,277 | IDR thresholded peaks | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR485TLP | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,015,366 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM23338;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170231;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_ | Stem Cell | Adult | ENCODE GM23338 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR485TLP] [Life stage: Adult] |
| NGENCG2MUBOPWY | ENCODE | Download | 126,968 | 42,663,549 | replicated peaks | hg38 | T-cell | Primary cell | CL:0000084 | Immune | ENCSR977LVI | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,263,469 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens T-cell female adult (21 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 21 years;Reference=NR;External_resources=GEO:GSE187916;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosamp | Lymphatic | Adult | ENCODE T-cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR977LVI] [Life stage: Adult] |
| NGENCQJIDQAGOI | ENCODE | Download | 184,694 | 72,453,311 | conservative IDR thresholded peaks | hg38 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR499ASS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,127,571 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Homo sapiens PC-3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE170337;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=PC-3;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=PC3,PC-3 cel | Reproductive | Adult | ENCODE PC-3 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR499ASS] [Life stage: Adult] |
| NGENCZDF3HPMAS | ENCODE | Download | 105,065 | 36,965,433 | IDR thresholded peaks | hg38 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR846VLJ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,319,195 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170300;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-15;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=sigmoid colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VLJ] [Life stage: Adult] |
| NGENC7LNYODFIR | ENCODE | Download | 137,581 | 42,326,415 | IDR thresholded peaks | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR591PIX | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,889,095 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens Panc1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 56 years;Reference=NR;External_resources=GEO:GSE170824;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Panc1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample | Digestive | Adult | ENCODE Panc1 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Life stage: Adult] |
| NGENC2YSYM4KY6 | ENCODE | Download | 134,958 | 48,171,695 | IDR thresholded peaks | hg38 | CD8+ alpha-beta effector memory cell | Primary cell | NTR:0000668 | Blood | ENCSR335LHS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,051,800 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 33 years;Reference=NR;External_resources=GEO:GSE187195;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;S | Cardiovascular | Adult | ENCODE CD8+ alpha-beta effector memory cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR335LHS] [Life stage: Adult] |
| NGENC3XFDMXBC6 | ENCODE | Download | 98,025 | 34,111,745 | IDR thresholded peaks | hg38 | GM19023 | Cell line | EFO:0010835 | Blood | ENCSR512FHU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,140,523 | 02/01/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM19023;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172598;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM19023;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE GM19023 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR512FHU] [Life stage: Adult] |
| NGENCTZ4OZJG7N | ENCODE | Download | 63,083 | 22,103,265 | IDR thresholded peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | CL:0000907 | Blood | ENCSR165FYY | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,407,128 | 10/07/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE215647;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=central memory CD8-positive, alpha-beta T cell;ENCODE_cell | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR165FYY] [Life stage: Adult] |
| NGENCMGU6PEYT4 | ENCODE | Download | 211,544 | 66,481,707 | replicated peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,360,430 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens HCT116;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE170407;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_syno | Digestive | Adult | ENCODE HCT116 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Adult] |
| NGENC2AI5TCMZE | ENCODE | Download | 237,760 | 86,375,886 | replicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 1, 2 | 1_1, 1_2, 2_1, 2_2 | Not applicable | ATAC-seq | bed narrowPeak | 6,490,828 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq replicated peaks | Biosample_summary=Homo sapiens colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170821;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=colonic mucosa;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_ter | Digestive | Adult | ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult] |
| NGENCZBYVW5LYZ | ENCODE | Download | 167,173 | 70,440,796 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR131HOY | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,603,530 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:35045337;External_resources=GEO:GSE187084;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=cen | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR131HOY] [Life stage: Adult] |
| NGENC3RFZWLFN4 | ENCODE | Download | 86,724 | 32,375,345 | IDR thresholded peaks | hg38 | HG03565 | Cell line | EFO:0010888 | Blood | ENCSR835WBW | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,003,042 | 01/26/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens HG03565;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172757;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HG03565;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE HG03565 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR835WBW] [Life stage: Adult] |
| NGENCQSQ23OFRA | ENCODE | Download | 90,588 | 32,780,245 | IDR thresholded peaks | hg38 | T-cell | Primary cell | NTR:0000537 | Blood | ENCSR993XED | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,009,761 | 06/21/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 38 years;Reference=NR;External_resources=GEO:GSE187976;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_n | Cardiovascular | Adult | ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993XED] [Life stage: Adult] |
| NGENC3CWVX66GC | ENCODE | Download | 129,779 | 40,177,181 | pseudoreplicated peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR220ASC | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,278,602 | 09/29/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE114202;Project=GGR;Award=U01HG007900;Experiment_date_released=2018-04-23;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A549 cell,A-549;Analysis_title=EN | Respiratory | Adult | ENCODE A549 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Life stage: Adult] |
| NGENCL67TEFGLS | ENCODE | Download | 107,020 | 33,355,346 | IDR thresholded peaks | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR591PIX | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,255,130 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens Panc1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 56 years;Reference=NR;External_resources=GEO:GSE170824;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Panc1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_ter | Digestive | Adult | ENCODE Panc1 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Life stage: Adult] |
| NGENCNAS5DUENR | ENCODE | Download | 214,911 | 67,351,055 | pseudoreplicated peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,433,065 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens HCT116;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE170407;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-10-08;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosampl | Digestive | Adult | ENCODE HCT116 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Adult] |
| NGENCWSFAM5PEF | ENCODE | Download | 132,352 | 52,029,244 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR065CER | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,887,730 | 10/13/2020 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 49 years;Reference=PMID:35045337;External_resources=GEO:GSE187257;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-08-24;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=motor neuron;ENCODE_cell_slims=neural cell;ENCODE_system_s | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR065CER] [Life stage: Adult] |
| NGENCDQB7AZEQ2 | ENCODE | Download | 156,054 | 63,970,909 | IDR thresholded peaks | hg38 | Cardiac atrium | Tissue | UBERON:0002078 | Heart | ENCSR177JWR | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 3,480,515 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens right cardiac atrium tissue female adult (59 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 59 years;Reference=NR;External_resources=GEO:GSE170630;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-17;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=right cardiac atrium;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory syste | Cardiovascular | Adult | ENCODE Cardiac atrium (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177JWR] [Life stage: Adult] |
| NGENCP5ZC2T3QF | ENCODE | Download | 114,748 | 37,495,443 | pseudoreplicated peaks | hg38 | Memory B cell | Primary cell | CL:0000787 | Blood | ENCSR610AQP | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,016,050 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens memory B cell male adult (40 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE187646;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=memory B cell;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune | Cardiovascular | Adult | ENCODE Memory B cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR610AQP] [Life stage: Adult] |
| NGENCJH2L5SVJG | ENCODE | Download | 191,438 | 63,252,534 | pseudoreplicated peaks | hg38 | Naive B cell | Primary cell | NTR:0000661 | Blood | ENCSR653VSR | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,910,493 | 08/31/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens stimulated activated naive B cell female adult (39 years) treated with 1 _g/mL anti-CD40 for 72 hours, 10 _g/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 39 years;Reference=NR;External_resources=GEO:GSE187780;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-09-09;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_ | Cardiovascular | Adult | ENCODE Naive B cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR653VSR] [Life stage: Adult] |
| NGENCVZOQLWBNI | ENCODE | Download | 118,366 | 40,671,340 | IDR thresholded peaks | hg38 | GM21723 | Cell line | CLO:0014886 | Blood | ENCSR233HSC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,591,336 | 02/02/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM21723;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE173044;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM21723;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM21723;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM21723 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR233HSC] [Life stage: Adult] |
| NGENCHGBZNJHM3 | ENCODE | Download | 149,919 | 50,748,832 | pseudoreplicated peaks | hg38 | HG02588 | Cell line | EFO:0010842 | Blood | ENCSR189VFC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,831,900 | 02/01/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens HG02588;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172954;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HG02588;ENCODE_cell_slims=lymphoblast;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.9.1 GRCh38; | Cardiovascular | Adult | ENCODE HG02588 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR189VFC] [Life stage: Adult] |
| NGENCL5J7KOPFT | ENCODE | Download | 145,216 | 50,135,210 | pseudoreplicated peaks | hg38 | Omental fat pad | Tissue | UBERON:0010414 | Adipose | ENCSR788TRR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,797,190 | 02/25/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens omental fat pad tissue female adult (51 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE172635;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-15;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=omental fat pad;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCO | Integumentary | Adult | ENCODE Omental fat pad (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR788TRR] [Life stage: Adult] |
| NGENC5PK2XX7S2 | ENCODE | Download | 190,270 | 62,086,851 | pseudoreplicated peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR095QNB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,880,170 | 02/24/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE170245;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_s | Cardiovascular | Adult | ENCODE GM12878 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Life stage: Adult] |
| NGENC757SWTDAS | ENCODE | Download | 268,415 | 102,693,007 | pseudoreplicated peaks | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR485TLP | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 7,074,014 | 03/16/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq pseudoreplicated peaks | Biosample_summary=Homo sapiens GM23338;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170231;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM23338;ENCODE_cell_slims=induced pluripotent stem cell,stem cell;ENCODE_system_slims=integumental system;ENCODE_biosample_ | Stem Cell | Adult | ENCODE GM23338 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR485TLP] [Life stage: Adult] |
| NGENCKL4J3PWTS | ENCODE | Download | 101,795 | 35,398,706 | IDR thresholded peaks | hg38 | GM19452 | Cell line | CLO:0026846 | Blood | ENCSR454UTH | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,237,815 | 02/04/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM19452;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE173043;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM19452;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM19452;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM19452 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR454UTH] [Life stage: Adult] |
| NGENCBLFGBSIA7 | ENCODE | Download | 102,724 | 35,723,473 | IDR thresholded peaks | hg38 | GM19035 | Cell line | CLO:0025816 | Blood | ENCSR637MUF | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,260,026 | 02/02/2021 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens GM19035;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172839;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM19035;ENCODE_cell_slims=NR;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=GM19035;Analysis_title=ENCODE4 v1.9.1 GRCh38;GM= | Cardiovascular | Adult | ENCODE GM19035 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR637MUF] [Life stage: Adult] |
| NGENCP4DOYNT43 | ENCODE | Download | 41,451 | 14,570,934 | IDR thresholded peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR859USB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 967,059 | 03/02/2022 | 08/22/2024 | Accessible chromatin | ATAC-seq IDR thresholded peaks | Biosample_summary=Homo sapiens K562;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE215513;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2022-04-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synony | Cardiovascular | Adult | ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR859USB] [Life stage: Adult] |
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