Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN035708 | ENCODE | Download | 79,849 | 27,866,463 | IDR thresholded peaks | hg38 | Naive thymus-derived CD8+, alpha-beta T cell | Primary cell | CL:0000900 | Blood | ENCSR614JAG | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,767,946 | 10/8/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR614JAG] [Orig: Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10. |
| NGEN035709 | ENCODE | Download | 199,301 | 60,658,564 | pseudoreplicated peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR483RKN | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,064,124 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=K562;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=07/21/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR483RKN] [Orig: Biosample_summary=K562;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=07/21/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035710 | ENCODE | Download | 150,097 | 49,765,393 | pseudoreplicated peaks | hg38 | HG03280 | Cell line | EFO:0010875 | Blood | ENCSR554WGQ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,850,686 | 1/22/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=HG03280;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG03280 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR554WGQ] [Orig: Biosample_summary=HG03280;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035711 | ENCODE | Download | 269,964 | 102,866,860 | pseudoreplicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR913OWV | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,734,554 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Unknown | ENCODE Lower motor neurons (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Orig: Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035712 | ENCODE | Download | 163,742 | 53,846,432 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR637OPZ | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,234,444 | 10/8/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR637OPZ] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8- |
| NGEN035713 | ENCODE | Download | 115,379 | 39,794,589 | pseudoreplicated peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,979,065 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE DND-41 (repl. 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035714 | ENCODE | Download | 143,932 | 49,344,886 | pseudoreplicated peaks | hg38 | Gastroesophageal sphincter | Tissue | UBERON:0004550 | Digestive | ENCSR670REK | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,766,686 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=musculature,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Adult | ENCODE Gastroesophageal sphincter (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR670REK] [Orig: Biosample_summary=Gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=musculature,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035715 | ENCODE | Download | 26,034 | 9,828,604 | IDR thresholded peaks | hg38 | Cerebellum | Tissue | UBERON:0002037 | Brain | ENCSR802GEV | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 575,729 | 5/12/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/09/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38 | Nervous | Adult | ENCODE Cerebellum (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802GEV] [Orig: Biosample_summary=Cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/09/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38] [Life stage: Adult] |
| NGEN035716 | ENCODE | Download | 215,545 | 81,915,379 | replicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR516YAD | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,380,448 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=Male adult (47 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR516YAD] [Orig: Biosample_summary=Male adult (47 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035717 | ENCODE | Download | 153,851 | 53,833,355 | IDR thresholded peaks | hg38 | NCI-H929 | Cell line | EFO:0001221 | Immune | ENCSR382LBS | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,329,683 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Lymphatic | Unknown | ENCODE NCI-H929 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Orig: Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035718 | ENCODE | Download | 220,436 | 73,262,612 | pseudoreplicated peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR095QNB | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,606,200 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Orig: Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035719 | ENCODE | Download | 130,088 | 45,904,411 | conservative IDR thresholded peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR042AWH | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,840,528 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HepG2 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR042AWH] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035720 | ENCODE | Download | 262,519 | 95,145,152 | pseudoreplicated peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR291GJU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,802,712 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HepG2 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR291GJU] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035721 | ENCODE | Download | 112,098 | 37,050,621 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta effector memory cell | Primary cell | NTR:0000668 | Blood | ENCSR335XRZ | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,919,032 | 10/7/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;Experiment | Cardiovascular | Adult | ENCODE CD8+ alpha-beta effector memory cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR335XRZ] [Orig: Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2. |
| NGEN035722 | ENCODE | Download | 138,840 | 47,120,611 | IDR thresholded peaks | hg38 | HG03354 | Cell line | EFO:0010877 | Blood | ENCSR025MEO | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,031,377 | 1/26/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=HG03354;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG03354 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR025MEO] [Orig: Biosample_summary=HG03354;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035723 | ENCODE | Download | 108,093 | 34,547,902 | pseudoreplicated peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR220ASC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,769,973 | 9/29/20 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Respiratory | Unknown | ENCODE A549 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035724 | ENCODE | Download | 197,819 | 64,338,480 | pseudoreplicated peaks | hg38 | HG02885 | Cell line | EFO:0010854 | Blood | ENCSR621JYI | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,988,925 | 2/2/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=HG02885;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG02885 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR621JYI] [Orig: Biosample_summary=HG02885;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035725 | ENCODE | Download | 76,833 | 27,816,243 | IDR thresholded peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,720,240 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE DND-41 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035726 | ENCODE | Download | 75,496 | 25,661,788 | IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR305QTE | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,707,554 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR305QTE] [Orig: Biosample_summary=Natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035727 | ENCODE | Download | 86,706 | 31,244,263 | IDR thresholded peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR535NOD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,018,175 | 4/20/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38 | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535NOD] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38] [Life stage: Unknown] |
| NGEN035728 | ENCODE | Download | 223,402 | 73,116,125 | pseudoreplicated peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR522FGI | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,818,551 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR522FGI] [Orig: Biosample_summary=Heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035729 | ENCODE | Download | 275,450 | 93,118,849 | pseudoreplicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 2 | 2_1, 2_2 | Not applicable | ATAC-seq | bed narrowPeak | 7,418,909 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon | Digestive | Adult | ENCODE Mucosa (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon] [Life stage: Adult] |
| NGEN035730 | ENCODE | Download | 41,654 | 16,419,626 | IDR thresholded peaks | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR694OWY | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 901,970 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Lymphatic | Adult | ENCODE Spleen (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR694OWY] [Orig: Biosample_summary=Spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035731 | ENCODE | Download | 94,684 | 32,124,117 | IDR thresholded peaks | hg38 | Naive thymus-derived CD4+, alpha-beta T cell | Primary cell | CL:0000895 | Blood | ENCSR260LAN | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,083,888 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus | Cardiovascular | Adult | ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR260LAN] [Orig: Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 |
| NGEN035732 | ENCODE | Download | 208,215 | 69,795,892 | pseudoreplicated peaks | hg38 | Psoas muscle | Tissue | UBERON:0008450 | Skeletal Muscle | ENCSR886VCC | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,556,763 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Muscular | Adult | ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR886VCC] [Orig: Biosample_summary=Psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035733 | ENCODE | Download | 70,080 | 23,312,763 | pseudoreplicated peaks | hg38 | Tibial nerve | Tissue | UBERON:0001323 | Nervous | ENCSR831KAH | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,772,942 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=peripheral nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/21/2017;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Nervous | Adult | ENCODE Tibial nerve (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR831KAH] [Orig: Biosample_summary=Tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=peripheral nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/21/2017;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035734 | ENCODE | Download | 87,507 | 30,205,381 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | CL:0000907 | Blood | ENCSR165FYY | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,275,897 | 10/7/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165FYY] [Orig: Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adu |
| NGEN035735 | ENCODE | Download | 158,637 | 53,303,342 | pseudoreplicated peaks | hg38 | GM19023 | Cell line | EFO:0010835 | Blood | ENCSR512FHU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,964,910 | 2/1/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM19023 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR512FHU] [Orig: Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035736 | ENCODE | Download | 57,282 | 22,112,503 | IDR thresholded peaks | hg38 | HG03060 | Cell line | EFO:0010863 | Blood | ENCSR470ZNM | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,336,995 | 2/2/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=HG03060;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG03060 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR470ZNM] [Orig: Biosample_summary=HG03060;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035737 | ENCODE | Download | 93,340 | 33,683,563 | IDR thresholded peaks | hg38 | GM21360 | Cell line | CLO:0015908 | Blood | ENCSR105SCQ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,086,459 | 1/14/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM21360;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/10/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM21360 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR105SCQ] [Orig: Biosample_summary=GM21360;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/10/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035738 | ENCODE | Download | 51,568 | 19,241,343 | IDR thresholded peaks | hg38 | GM19468 | Cell line | CLO:0026875 | Blood | ENCSR635AIF | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,194,345 | 2/1/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM19468;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM19468 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR635AIF] [Orig: Biosample_summary=GM19468;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035739 | ENCODE | Download | 104,308 | 32,706,490 | pseudoreplicated peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR956DNB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,716,080 | 3/2/22 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38 | Cardiovascular | Unknown | ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Orig: Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38] [Life stage: Unknown] |
| NGEN035740 | ENCODE | Download | 158,195 | 52,946,954 | pseudoreplicated peaks | hg38 | DND-41 | Cell line | EFO:0007074 | Blood | ENCSR660WSB | 1, 2, 3 | 1_1, 2_1, 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,028,378 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE DND-41 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Orig: Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035741 | ENCODE | Download | 190,616 | 69,067,317 | IDR thresholded peaks | hg38 | Liver lobe | Tissue | UBERON:0001114 | Liver | ENCSR607BTF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,278,034 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Adult | ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR607BTF] [Orig: Biosample_summary=Right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035742 | ENCODE | Download | 83,853 | 30,118,660 | IDR thresholded peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR204SMO | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 1,892,701 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR204SMO] [Orig: Biosample_summary=Heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035743 | ENCODE | Download | 51,843 | 18,670,853 | IDR thresholded peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR290AUK | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,237,860 | 4/20/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38 | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR290AUK] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38] [Life stage: Unknown] |
| NGEN035744 | ENCODE | Download | 107,702 | 39,433,179 | IDR thresholded peaks | hg38 | Right ventricle | Tissue | UBERON:0002080 | Heart | ENCSR053SGP | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 2,445,676 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR053SGP] [Orig: Biosample_summary=Heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035745 | ENCODE | Download | 127,863 | 43,527,632 | pseudoreplicated peaks | hg38 | Spleen | Tissue | UBERON:0002106 | Immune Organ | ENCSR078EBD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,289,684 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Lymphatic | Adult | ENCODE Spleen (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR078EBD] [Orig: Biosample_summary=Spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035746 | ENCODE | Download | 111,078 | 43,194,959 | IDR thresholded peaks | hg38 | CD4+ alpha-beta naive T cell | Primary cell | NTR:0000497 | Blood | ENCSR373NFA | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,521,868 | 10/7/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD4+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR373NFA] [Orig: Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-bet |
| NGEN035747 | ENCODE | Download | 138,676 | 53,777,315 | IDR thresholded peaks | hg38 | NCI-H929 | Cell line | EFO:0001221 | Immune | ENCSR382LBS | 1, 2, 3 | 1_1, 2_1, 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,137,530 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Lymphatic | Unknown | ENCODE NCI-H929 (repl. 1, 2, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Orig: Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035748 | ENCODE | Download | 82,865 | 31,515,879 | conservative IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR808HWS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,861,736 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Orig: Biosample_summary=Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;E |
| NGEN035749 | ENCODE | Download | 162,963 | 50,728,744 | replicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000667 | Blood | ENCSR863TVR | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,265,581 | 10/8/21 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Orig: Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, a |
| NGEN035750 | ENCODE | Download | 205,179 | 68,142,329 | pseudoreplicated peaks | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR310RJN | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,379,055 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR310RJN] [Orig: Biosample_summary=Heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035751 | ENCODE | Download | 116,659 | 40,534,561 | pseudoreplicated peaks | hg38 | GM18499 | Cell line | CLO:0024933 | Blood | ENCSR700HPA | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,104,903 | 2/1/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM18499;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM18499 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR700HPA] [Orig: Biosample_summary=GM18499;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035752 | ENCODE | Download | 107,758 | 37,304,086 | pseudoreplicated peaks | hg38 | Cardiac septum | Tissue | UBERON:0002099 | Heart | ENCSR167SYF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 2,733,637 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38;flag=WARNING, unresolved new name. | Cardiovascular | Adult | ENCODE Cardiac septum (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR167SYF] [Orig: Biosample_summary=Cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38;flag=WARNING, unresolved new name.] [Life stage: Adult] |
| NGEN035753 | ENCODE | Download | 75,844 | 27,424,157 | IDR thresholded peaks | hg38 | Left ventricle | Tissue | UBERON:0002084 | Heart | ENCSR846VPV | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 1,700,840 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Adult | ENCODE Left ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VPV] [Orig: Biosample_summary=Heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035754 | ENCODE | Download | 129,854 | 46,917,409 | IDR thresholded peaks | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR200OML | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,844,128 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Respiratory | Unknown | ENCODE IMR-90 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR200OML] [Orig: Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035755 | ENCODE | Download | 113,044 | 36,700,542 | pseudoreplicated peaks | hg38 | Dendritic cell | In vitro differentiated cells | CL:0000451 | Blood | ENCSR679NRJ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,940,854 | 4/20/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38 | Cardiovascular | Unknown | ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR679NRJ] [Orig: Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38] [Life stage: Unknown] |
| NGEN035756 | ENCODE | Download | 254,048 | 89,201,309 | pseudoreplicated peaks | hg38 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR200OML | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,406,661 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Respiratory | Unknown | ENCODE IMR-90 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR200OML] [Orig: Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035757 | ENCODE | Download | 147,212 | 51,628,166 | pseudoreplicated peaks | hg38 | T-cell | Primary cell | NTR:0000537 | Blood | ENCSR558ZSN | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,812,669 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE T-cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR558ZSN] [Orig: Biosample_summary=Activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] |
| NGEN035758 | ENCODE | Download | 277,677 | 111,731,013 | replicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR913OWV | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 7,135,083 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Unknown | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Orig: Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035759 | ENCODE | Download | 159,905 | 64,171,230 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR709QRD | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,433,924 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035760 | ENCODE | Download | 73,627 | 27,375,278 | IDR thresholded peaks | hg38 | HG03097 | Cell line | EFO:0010867 | Blood | ENCSR608KJD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,659,128 | 2/4/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=HG03097;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG03097 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR608KJD] [Orig: Biosample_summary=HG03097;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035761 | ENCODE | Download | 160,319 | 53,326,108 | pseudoreplicated peaks | hg38 | Psoas muscle | Tissue | UBERON:0008450 | Skeletal Muscle | ENCSR890DWH | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,239,652 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Muscular | Adult | ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR890DWH] [Orig: Biosample_summary=Psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035762 | ENCODE | Download | 110,781 | 38,383,917 | IDR thresholded peaks | hg38 | GM21390 | Cell line | CLO:0015884 | Blood | ENCSR024WOD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,460,830 | 1/26/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM21390;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM21390 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024WOD] [Orig: Biosample_summary=GM21390;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035763 | ENCODE | Download | 232,401 | 85,023,522 | pseudoreplicated peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR065CER | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,787,973 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR065CER] [Orig: Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035764 | ENCODE | Download | 95,842 | 33,955,097 | IDR thresholded peaks | hg38 | GM21576 | Cell line | CLO:0014097 | Blood | ENCSR122NDR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,157,990 | 1/22/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM21576;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM21576 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR122NDR] [Orig: Biosample_summary=GM21576;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035765 | ENCODE | Download | 216,179 | 73,818,500 | pseudoreplicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 5,644,931 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon | Digestive | Adult | ENCODE Mucosa (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon] [Life stage: Adult] |
| NGEN035766 | ENCODE | Download | 119,015 | 47,932,722 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR709QRD | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,577,834 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035767 | ENCODE | Download | 163,882 | 52,581,602 | conservative IDR thresholded peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,496,876 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HCT116 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR872WGW] [Orig: Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035768 | ENCODE | Download | 79,559 | 28,114,958 | IDR thresholded peaks | hg38 | Memory B cell | Primary cell | NTR:0000662 | Blood | ENCSR302PTB | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,754,128 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Memory B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Orig: Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_release |
| NGEN035769 | ENCODE | Download | 147,284 | 48,820,623 | pseudoreplicated peaks | hg38 | CD8+ alpha-beta naive T cell | Primary cell | NTR:0000502 | Blood | ENCSR477YSU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,880,562 | 10/8/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta naive T cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR477YSU] [Orig: Biosample_summary=Activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD8-positive, alpha-beta T ce |
| NGEN035770 | ENCODE | Download | 204,450 | 83,614,965 | IDR thresholded peaks | hg38 | Liver lobe | Tissue | UBERON:0001114 | Liver | ENCSR685ZMP | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,763,630 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Adult | ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685ZMP] [Orig: Biosample_summary=Right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035771 | ENCODE | Download | 88,688 | 31,322,192 | IDR thresholded peaks | hg38 | Natural killer cell | Primary cell | CL:0000623 | Blood | ENCSR044ATC | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,001,003 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Natural killer cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR044ATC] [Orig: Biosample_summary=Natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035772 | ENCODE | Download | 192,391 | 78,978,542 | IDR thresholded peaks | hg38 | Lung | Tissue | UBERON:0002168 | Lung | ENCSR682ETE | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 4,351,295 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Left lung;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Respiratory | Child | ENCODE Lung (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR682ETE] [Orig: Biosample_summary=Left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Left lung;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Child] |
| NGEN035773 | ENCODE | Download | 115,442 | 40,332,528 | IDR thresholded peaks | hg38 | HG02852 | Cell line | EFO:0010851 | Blood | ENCSR368FYV | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,535,913 | 1/22/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=HG02852;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG02852 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR368FYV] [Orig: Biosample_summary=HG02852;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035774 | ENCODE | Download | 90,147 | 31,048,909 | IDR thresholded peaks | hg38 | Memory B cell | Primary cell | NTR:0000662 | Blood | ENCSR302PTB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,976,525 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Memory B cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Orig: Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_release |
| NGEN035775 | ENCODE | Download | 255,796 | 89,520,629 | pseudoreplicated peaks | hg38 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR499ASS | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 6,511,186 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Reproductive | Unknown | ENCODE PC-3 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499ASS] [Orig: Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035776 | ENCODE | Download | 202,196 | 66,418,219 | pseudoreplicated peaks | hg38 | GM18867 | Cell line | CLO:0026250 | Blood | ENCSR492FJO | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,182,865 | 2/4/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM18867;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM18867 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR492FJO] [Orig: Biosample_summary=GM18867;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035777 | ENCODE | Download | 198,597 | 79,190,026 | conservative IDR thresholded peaks | hg38 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR291GJU | 1, 2, 3 | 1_1, 2_1, 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,425,691 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HepG2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR291GJU] [Orig: Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035778 | ENCODE | Download | 73,251 | 25,503,003 | IDR thresholded peaks | hg38 | Naive B cell | Primary cell | CL:0000788 | Blood | ENCSR685OFR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,673,129 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Naive B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685OFR] [Orig: Biosample_summary=Naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035779 | ENCODE | Download | 537 | 183,687 | IDR thresholded peaks | hg38 | T-cell | Primary cell | CL:0000084 | Immune | ENCSR032MEH | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 11,993 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=T-cell male adult (43 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Lymphatic | Adult | ENCODE T-cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032MEH] [Orig: Biosample_summary=T-cell male adult (43 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035780 | ENCODE | Download | 180,968 | 71,391,277 | IDR thresholded peaks | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR485TLP | 3 | 3_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,015,366 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Stem Cell | Unknown | ENCODE GM23338 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR485TLP] [Orig: Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035781 | ENCODE | Download | 126,968 | 42,663,549 | replicated peaks | hg38 | T-cell | Primary cell | CL:0000084 | Immune | ENCSR977LVI | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,263,469 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=T-cell female adult (21 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Lymphatic | Adult | ENCODE T-cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR977LVI] [Orig: Biosample_summary=T-cell female adult (21 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035782 | ENCODE | Download | 184,694 | 72,453,311 | conservative IDR thresholded peaks | hg38 | PC-3 | Cell line | EFO:0002074 | Male Reproductive | ENCSR499ASS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,127,571 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq conservative IDR thresholded peaks | Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Reproductive | Unknown | ENCODE PC-3 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR499ASS] [Orig: Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035783 | ENCODE | Download | 105,065 | 36,965,433 | IDR thresholded peaks | hg38 | Sigmoid colon | Tissue | UBERON:0001159 | Digestive | ENCSR846VLJ | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,319,195 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Adult | ENCODE Sigmoid colon (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VLJ] [Orig: Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035784 | ENCODE | Download | 137,581 | 42,326,415 | IDR thresholded peaks | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR591PIX | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,889,095 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE Panc1 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Orig: Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035785 | ENCODE | Download | 134,958 | 48,171,695 | IDR thresholded peaks | hg38 | CD8+ alpha-beta effector memory cell | Primary cell | NTR:0000668 | Blood | ENCSR335LHS | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,051,800 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;Experi | Cardiovascular | Adult | ENCODE CD8+ alpha-beta effector memory cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR335LHS] [Orig: Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_poole |
| NGEN035786 | ENCODE | Download | 98,025 | 34,111,745 | IDR thresholded peaks | hg38 | GM19023 | Cell line | EFO:0010835 | Blood | ENCSR512FHU | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,140,523 | 2/1/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM19023 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR512FHU] [Orig: Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035787 | ENCODE | Download | 63,083 | 22,103,265 | IDR thresholded peaks | hg38 | CD8+ alpha-beta memory T cell | Primary cell | CL:0000907 | Blood | ENCSR165FYY | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 1,407,128 | 10/7/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE CD8+ alpha-beta memory T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR165FYY] [Orig: Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stag |
| NGEN035788 | ENCODE | Download | 211,544 | 66,481,707 | replicated peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,360,430 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HCT116 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Orig: Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035789 | ENCODE | Download | 237,760 | 86,375,886 | replicated peaks | hg38 | Mucosa | Tissue | UBERON:0000317 | Digestive | ENCSR970UNF | 1, 2 | 1_1, 1_2, 2_1, 2_2 | Not applicable | ATAC-seq | bed narrowPeak | 6,490,828 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq replicated peaks | Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon | Digestive | Adult | ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Orig: Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon] [Life stage: Adult] |
| NGEN035790 | ENCODE | Download | 167,173 | 70,440,796 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR131HOY | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,603,530 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR131HOY] [Orig: Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035791 | ENCODE | Download | 86,724 | 32,375,345 | IDR thresholded peaks | hg38 | HG03565 | Cell line | EFO:0010888 | Blood | ENCSR835WBW | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,003,042 | 1/26/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=HG03565;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG03565 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR835WBW] [Orig: Biosample_summary=HG03565;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035792 | ENCODE | Download | 90,588 | 32,780,245 | IDR thresholded peaks | hg38 | T-cell | Primary cell | NTR:0000537 | Blood | ENCSR993XED | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,009,761 | 6/21/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=06/24/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993XED] [Orig: Biosample_summary=Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=06/24/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Lif |
| NGEN035793 | ENCODE | Download | 129,779 | 40,177,181 | pseudoreplicated peaks | hg38 | A549 | Cell line | EFO:0001086 | Lung | ENCSR220ASC | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,278,602 | 9/29/20 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Respiratory | Unknown | ENCODE A549 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Orig: Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Unknown] |
| NGEN035794 | ENCODE | Download | 107,020 | 33,355,346 | IDR thresholded peaks | hg38 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR591PIX | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,255,130 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE Panc1 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Orig: Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035795 | ENCODE | Download | 214,911 | 67,351,055 | pseudoreplicated peaks | hg38 | HCT116 | Cell line | EFO:0002824 | Digestive | ENCSR872WGW | 1, 2 | 1_1, 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 5,433,065 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Digestive | Unknown | ENCODE HCT116 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Orig: Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035796 | ENCODE | Download | 132,352 | 52,029,244 | IDR thresholded peaks | hg38 | Lower motor neurons | In vitro differentiated cells | CL:0000100 | Blood | ENCSR065CER | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,887,730 | 10/13/20 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Lower motor neurons (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR065CER] [Orig: Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035797 | ENCODE | Download | 156,054 | 63,970,909 | IDR thresholded peaks | hg38 | Cardiac atrium | Tissue | UBERON:0002078 | Heart | ENCSR177JWR | 1 | 1_1, 1_2 | Not applicable | ATAC-seq | bed narrowPeak | 3,480,515 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=Right cardiac atrium tissue female adult (59 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right cardiac atrium;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.8.0 GRCh38 | Cardiovascular | Adult | ENCODE Cardiac atrium (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177JWR] [Orig: Biosample_summary=Right cardiac atrium tissue female adult (59 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right cardiac atrium;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.8.0 GRCh38] [Life stage: Adult] |
| NGEN035798 | ENCODE | Download | 114,748 | 37,495,443 | pseudoreplicated peaks | hg38 | Memory B cell | Primary cell | CL:0000787 | Blood | ENCSR610AQP | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,016,050 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Memory B cell male adult (40 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Memory B cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR610AQP] [Orig: Biosample_summary=Memory B cell male adult (40 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38] [Life stage: Adult] |
| NGEN035799 | ENCODE | Download | 191,438 | 63,252,534 | pseudoreplicated peaks | hg38 | Naive B cell | Primary cell | NTR:0000661 | Blood | ENCSR653VSR | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,910,493 | 8/31/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Stimulated activated naive B cell female adult (39 years) treated with 1 ?g/mL anti-CD40 for 72 hours, 10 ?g/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38 | Cardiovascular | Adult | ENCODE Naive B cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR653VSR] [Orig: Biosample_summary=Stimulated activated naive B cell female adult (39 years) treated with 1 ?g/mL anti-CD40 for 72 hours, 10 ?g/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive B cell;Experiment_date_release |
| NGEN035800 | ENCODE | Download | 118,366 | 40,671,340 | IDR thresholded peaks | hg38 | GM21723 | Cell line | CLO:0014886 | Blood | ENCSR233HSC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,591,336 | 2/2/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM21723;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM21723 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR233HSC] [Orig: Biosample_summary=GM21723;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035801 | ENCODE | Download | 149,919 | 50,748,832 | pseudoreplicated peaks | hg38 | HG02588 | Cell line | EFO:0010842 | Blood | ENCSR189VFC | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,831,900 | 2/1/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=HG02588;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE HG02588 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR189VFC] [Orig: Biosample_summary=HG02588;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035802 | ENCODE | Download | 145,216 | 50,135,210 | pseudoreplicated peaks | hg38 | Omental fat pad | Tissue | UBERON:0010414 | Adipose | ENCSR788TRR | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 3,797,190 | 2/25/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=Omental fat pad tissue female adult (51 years);Lab=Michael Snyder, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Integumentary | Adult | ENCODE Omental fat pad (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR788TRR] [Orig: Biosample_summary=Omental fat pad tissue female adult (51 years);Lab=Michael Snyder, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Adult] |
| NGEN035803 | ENCODE | Download | 190,270 | 62,086,851 | pseudoreplicated peaks | hg38 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR095QNB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 4,880,170 | 2/24/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM12878 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Orig: Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035804 | ENCODE | Download | 268,415 | 102,693,007 | pseudoreplicated peaks | hg38 | GM23338 | Cell line | EFO:0007950 | iPSC | ENCSR485TLP | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 7,074,014 | 3/16/21 | 08/22/24 | Called peaks | ATAC-seq pseudoreplicated peaks | Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Stem Cell | Unknown | ENCODE GM23338 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR485TLP] [Orig: Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035805 | ENCODE | Download | 101,795 | 35,398,706 | IDR thresholded peaks | hg38 | GM19452 | Cell line | CLO:0026846 | Blood | ENCSR454UTH | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,237,815 | 2/4/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM19452;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM19452 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR454UTH] [Orig: Biosample_summary=GM19452;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035806 | ENCODE | Download | 102,724 | 35,723,473 | IDR thresholded peaks | hg38 | GM19035 | Cell line | CLO:0025816 | Blood | ENCSR637MUF | 1 | 1_1 | Not applicable | ATAC-seq | bed narrowPeak | 2,260,026 | 2/2/21 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=GM19035;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38 | Cardiovascular | Unknown | ENCODE GM19035 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR637MUF] [Orig: Biosample_summary=GM19035;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38] [Life stage: Unknown] |
| NGEN035807 | ENCODE | Download | 41,451 | 14,570,934 | IDR thresholded peaks | hg38 | K562 | Cell line | EFO:0002067 | Blood | ENCSR859USB | 2 | 2_1 | Not applicable | ATAC-seq | bed narrowPeak | 967,059 | 3/2/22 | 08/22/24 | Called peaks | ATAC-seq IDR thresholded peaks | Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38 | Cardiovascular | Unknown | ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR859USB] [Orig: Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38] [Life stage: Unknown] |
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