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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category Life Stage trackName
NGEN035708 ENCODE Download 79,849 27,866,463 IDR thresholded peaks hg38 Naive thymus-derived CD8+, alpha-beta T cell Primary cell CL:0000900 Blood ENCSR614JAG 2 2_1 Not applicable ATAC-seq bed narrowPeak 1,767,946 10/08/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Naive thymus-derived CD8+, alpha-beta T cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR614JAG] [Life stage: Adult]
NGEN035709 ENCODE Download 199,301 60,658,564 pseudoreplicated peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR483RKN 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,064,124 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=K562;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=07/21/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR483RKN] [Life stage: Unknown]
NGEN035710 ENCODE Download 150,097 49,765,393 pseudoreplicated peaks hg38 HG03280 Cell line EFO:0010875 Blood ENCSR554WGQ 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,850,686 01/22/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=HG03280;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG03280 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR554WGQ] [Life stage: Unknown]
NGEN035711 ENCODE Download 269,964 102,866,860 pseudoreplicated peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR913OWV 2 2_1 Not applicable ATAC-seq bed narrowPeak 6,734,554 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE Lower motor neurons (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Life stage: Unknown]
NGEN035712 ENCODE Download 163,742 53,846,432 pseudoreplicated peaks hg38 CD8+ alpha-beta naive T cell Primary cell NTR:0000667 Blood ENCSR637OPZ 2 2_1 Not applicable ATAC-seq bed narrowPeak 4,234,444 10/08/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-15 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD8+ alpha-beta naive T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR637OPZ] [Life stage: Adult]
NGEN035713 ENCODE Download 115,379 39,794,589 pseudoreplicated peaks hg38 DND-41 Cell line EFO:0007074 Blood ENCSR660WSB 3 3_1 Not applicable ATAC-seq bed narrowPeak 2,979,065 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE DND-41 (repl. 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Unknown]
NGEN035714 ENCODE Download 143,932 49,344,886 pseudoreplicated peaks hg38 Gastroesophageal sphincter Tissue UBERON:0004550 Digestive ENCSR670REK 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,766,686 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Gastroesophageal sphincter tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=musculature,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Adult ENCODE Gastroesophageal sphincter (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR670REK] [Life stage: Adult]
NGEN035715 ENCODE Download 26,034 9,828,604 IDR thresholded peaks hg38 Cerebellum Tissue UBERON:0002037 Brain ENCSR802GEV 1 1_1 Not applicable ATAC-seq bed narrowPeak 575,729 05/12/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Cerebellum tissue male adult (20 years);Lab=Barbara Wold, Caltech;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/09/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38;schema=BED6+4 Nervous Adult ENCODE Cerebellum (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802GEV] [Life stage: Adult]
NGEN035716 ENCODE Download 215,545 81,915,379 replicated peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR516YAD 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,380,448 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=Male adult (47 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR516YAD] [Life stage: Adult]
NGEN035717 ENCODE Download 153,851 53,833,355 IDR thresholded peaks hg38 NCI-H929 Cell line EFO:0001221 Immune ENCSR382LBS 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,329,683 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Lymphatic Unknown ENCODE NCI-H929 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Life stage: Unknown]
NGEN035718 ENCODE Download 220,436 73,262,612 pseudoreplicated peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR095QNB 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,606,200 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM12878 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Life stage: Unknown]
NGEN035719 ENCODE Download 130,088 45,904,411 conservative IDR thresholded peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR042AWH 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 2,840,528 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq conservative IDR thresholded peaks Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HepG2 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR042AWH] [Life stage: Unknown]
NGEN035720 ENCODE Download 262,519 95,145,152 pseudoreplicated peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR291GJU 1 1_1 Not applicable ATAC-seq bed narrowPeak 6,802,712 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HepG2 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR291GJU] [Life stage: Unknown]
NGEN035721 ENCODE Download 112,098 37,050,621 pseudoreplicated peaks hg38 CD8+ alpha-beta effector memory cell Primary cell NTR:0000668 Blood ENCSR335XRZ 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,919,032 10/07/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (36 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;Experiment Cardiovascular Adult ENCODE CD8+ alpha-beta effector memory cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR335XRZ] [Life stage: Adult]
NGEN035722 ENCODE Download 138,840 47,120,611 IDR thresholded peaks hg38 HG03354 Cell line EFO:0010877 Blood ENCSR025MEO 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,031,377 01/26/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=HG03354;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG03354 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR025MEO] [Life stage: Unknown]
NGEN035723 ENCODE Download 108,093 34,547,902 pseudoreplicated peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR220ASC 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,769,973 09/29/2020 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Respiratory Unknown ENCODE A549 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Life stage: Unknown]
NGEN035724 ENCODE Download 197,819 64,338,480 pseudoreplicated peaks hg38 HG02885 Cell line EFO:0010854 Blood ENCSR621JYI 1 1_1 Not applicable ATAC-seq bed narrowPeak 4,988,925 02/02/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=HG02885;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG02885 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR621JYI] [Life stage: Unknown]
NGEN035725 ENCODE Download 76,833 27,816,243 IDR thresholded peaks hg38 DND-41 Cell line EFO:0007074 Blood ENCSR660WSB 3 3_1 Not applicable ATAC-seq bed narrowPeak 1,720,240 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE DND-41 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Unknown]
NGEN035726 ENCODE Download 75,496 25,661,788 IDR thresholded peaks hg38 Natural killer cell Primary cell CL:0000623 Blood ENCSR305QTE 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 1,707,554 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Natural killer cell male adult (47 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR305QTE] [Life stage: Adult]
NGEN035727 ENCODE Download 86,706 31,244,263 IDR thresholded peaks hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood ENCSR535NOD 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,018,175 04/20/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535NOD] [Life stage: Unknown]
NGEN035728 ENCODE Download 223,402 73,116,125 pseudoreplicated peaks hg38 Right ventricle Tissue UBERON:0002080 Heart ENCSR522FGI 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 5,818,551 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Heart right ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Right ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR522FGI] [Life stage: Adult]
NGEN035729 ENCODE Download 275,450 93,118,849 pseudoreplicated peaks hg38 Mucosa Tissue UBERON:0000317 Digestive ENCSR970UNF 2 2_1, 2_2 Not applicable ATAC-seq bed narrowPeak 7,418,909 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon;schema=BED6+4 Digestive Adult ENCODE Mucosa (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult]
NGEN035730 ENCODE Download 41,654 16,419,626 IDR thresholded peaks hg38 Spleen Tissue UBERON:0002106 Immune Organ ENCSR694OWY 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 901,970 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Spleen tissue male adult (26 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Lymphatic Adult ENCODE Spleen (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR694OWY] [Life stage: Adult]
NGEN035731 ENCODE Download 94,684 32,124,117 IDR thresholded peaks hg38 Naive thymus-derived CD4+, alpha-beta T cell Primary cell CL:0000895 Blood ENCSR260LAN 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 2,083,888 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Naive thymus-derived CD4-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;premapping_cell_type=Naive thymus-derived CD4+, alpha-beta T cell;tissue_of_origin=Thymus;schema=BED6+4 Cardiovascular Adult ENCODE Naive thymus-derived CD4+, alpha-beta T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR260LAN] [Life stage: Adult]
NGEN035732 ENCODE Download 208,215 69,795,892 pseudoreplicated peaks hg38 Psoas muscle Tissue UBERON:0008450 Skeletal Muscle ENCSR886VCC 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 5,556,763 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Psoas muscle tissue female adult (47 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Muscular Adult ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR886VCC] [Life stage: Adult]
NGEN035733 ENCODE Download 70,080 23,312,763 pseudoreplicated peaks hg38 Tibial nerve Tissue UBERON:0001323 Nervous ENCSR831KAH 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,772,942 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Tibial nerve tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=peripheral nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/21/2017;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Nervous Adult ENCODE Tibial nerve (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR831KAH] [Life stage: Adult]
NGEN035734 ENCODE Download 87,507 30,205,381 pseudoreplicated peaks hg38 CD8+ alpha-beta memory T cell Primary cell CL:0000907 Blood ENCSR165FYY 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,275,897 10/07/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD8+ alpha-beta memory T cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165FYY] [Life stage: Adult]
NGEN035735 ENCODE Download 158,637 53,303,342 pseudoreplicated peaks hg38 GM19023 Cell line EFO:0010835 Blood ENCSR512FHU 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,964,910 02/01/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM19023 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR512FHU] [Life stage: Unknown]
NGEN035736 ENCODE Download 57,282 22,112,503 IDR thresholded peaks hg38 HG03060 Cell line EFO:0010863 Blood ENCSR470ZNM 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,336,995 02/02/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=HG03060;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG03060 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR470ZNM] [Life stage: Unknown]
NGEN035737 ENCODE Download 93,340 33,683,563 IDR thresholded peaks hg38 GM21360 Cell line CLO:0015908 Blood ENCSR105SCQ 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,086,459 01/14/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM21360;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/10/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM21360 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR105SCQ] [Life stage: Unknown]
NGEN035738 ENCODE Download 51,568 19,241,343 IDR thresholded peaks hg38 GM19468 Cell line CLO:0026875 Blood ENCSR635AIF 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,194,345 02/01/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM19468;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM19468 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR635AIF] [Life stage: Unknown]
NGEN035739 ENCODE Download 104,308 32,706,490 pseudoreplicated peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR956DNB 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,716,080 03/02/2022 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Life stage: Unknown]
NGEN035740 ENCODE Download 158,195 52,946,954 pseudoreplicated peaks hg38 DND-41 Cell line EFO:0007074 Blood ENCSR660WSB 1, 2, 3 1_1, 2_1, 3_1 Not applicable ATAC-seq bed narrowPeak 4,028,378 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=DND-41;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE DND-41 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR660WSB] [Life stage: Unknown]
NGEN035741 ENCODE Download 190,616 69,067,317 IDR thresholded peaks hg38 Liver lobe Tissue UBERON:0001114 Liver ENCSR607BTF 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 4,278,034 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Right lobe of liver tissue male adult (45 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Adult ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR607BTF] [Life stage: Adult]
NGEN035742 ENCODE Download 83,853 30,118,660 IDR thresholded peaks hg38 Right ventricle Tissue UBERON:0002080 Heart ENCSR204SMO 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 1,892,701 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Heart right ventricle tissue male adult (46 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR204SMO] [Life stage: Adult]
NGEN035743 ENCODE Download 51,843 18,670,853 IDR thresholded peaks hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood ENCSR290AUK 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,237,860 04/20/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE Dendritic cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR290AUK] [Life stage: Unknown]
NGEN035744 ENCODE Download 107,702 39,433,179 IDR thresholded peaks hg38 Right ventricle Tissue UBERON:0002080 Heart ENCSR053SGP 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 2,445,676 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Heart right ventricle tissue male adult (54 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart right ventricle;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Right ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR053SGP] [Life stage: Adult]
NGEN035745 ENCODE Download 127,863 43,527,632 pseudoreplicated peaks hg38 Spleen Tissue UBERON:0002106 Immune Organ ENCSR078EBD 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,289,684 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Spleen tissue female adult (51 years);Lab=Michael Snyder, Stanford;System=immune system,digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Lymphatic Adult ENCODE Spleen (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR078EBD] [Life stage: Adult]
NGEN035746 ENCODE Download 111,078 43,194,959 IDR thresholded peaks hg38 CD4+ alpha-beta naive T cell Primary cell NTR:0000497 Blood ENCSR373NFA 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 2,521,868 10/07/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD4-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD4+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR373NFA] [Life stage: Adult]
NGEN035747 ENCODE Download 138,676 53,777,315 IDR thresholded peaks hg38 NCI-H929 Cell line EFO:0001221 Immune ENCSR382LBS 1, 2, 3 1_1, 2_1, 3_1 Not applicable ATAC-seq bed narrowPeak 3,137,530 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=NCI-H929;Lab=Michael Snyder, Stanford;System=immune system,skeletal system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/06/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Lymphatic Unknown ENCODE NCI-H929 (repl. 1, 2, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR382LBS] [Life stage: Unknown]
NGEN035748 ENCODE Download 82,865 31,515,879 conservative IDR thresholded peaks hg38 Natural killer cell Primary cell CL:0000623 Blood ENCSR808HWS 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 1,861,736 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq conservative IDR thresholded peaks Biosample_summary=Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult]
NGEN035749 ENCODE Download 162,963 50,728,744 replicated peaks hg38 CD8+ alpha-beta naive T cell Primary cell NTR:0000667 Blood ENCSR863TVR 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 4,265,581 10/08/2021 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=Stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Life stage: Adult]
NGEN035750 ENCODE Download 205,179 68,142,329 pseudoreplicated peaks hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR310RJN 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 5,379,055 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Heart left ventricle tissue male adult (43 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Left ventricle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR310RJN] [Life stage: Adult]
NGEN035751 ENCODE Download 116,659 40,534,561 pseudoreplicated peaks hg38 GM18499 Cell line CLO:0024933 Blood ENCSR700HPA 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,104,903 02/01/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM18499;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM18499 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR700HPA] [Life stage: Unknown]
NGEN035752 ENCODE Download 107,758 37,304,086 pseudoreplicated peaks hg38 Cardiac septum Tissue UBERON:0002099 Heart ENCSR167SYF 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 2,733,637 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Cardiac septum tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=06/16/2022;File_analysis_title=ENCODE4 v1.9.1 GRCh38;flag=WARNING, unresolved new name.;schema=BED6+4 Cardiovascular Adult ENCODE Cardiac septum (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR167SYF] [Life stage: Adult]
NGEN035753 ENCODE Download 75,844 27,424,157 IDR thresholded peaks hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR846VPV 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 1,700,840 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Heart left ventricle tissue female adult (66 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Heart left ventricle;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Left ventricle (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VPV] [Life stage: Adult]
NGEN035754 ENCODE Download 129,854 46,917,409 IDR thresholded peaks hg38 IMR-90 Cell line EFO:0001196 Lung ENCSR200OML 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,844,128 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Respiratory Unknown ENCODE IMR-90 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR200OML] [Life stage: Unknown]
NGEN035755 ENCODE Download 113,044 36,700,542 pseudoreplicated peaks hg38 Dendritic cell In vitro differentiated cells CL:0000451 Blood ENCSR679NRJ 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,940,854 04/20/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour;Lab=Manuel Garber, UMass;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=01/19/2017;File_analysis_title=ENCODE4 v1.9.2 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR679NRJ] [Life stage: Unknown]
NGEN035756 ENCODE Download 254,048 89,201,309 pseudoreplicated peaks hg38 IMR-90 Cell line EFO:0001196 Lung ENCSR200OML 1 1_1 Not applicable ATAC-seq bed narrowPeak 6,406,661 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=IMR-90 nuclear fraction and unspecified fraction;Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Respiratory Unknown ENCODE IMR-90 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR200OML] [Life stage: Unknown]
NGEN035757 ENCODE Download 147,212 51,628,166 pseudoreplicated peaks hg38 T-cell Primary cell NTR:0000537 Blood ENCSR558ZSN 2 2_1 Not applicable ATAC-seq bed narrowPeak 3,812,669 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Activated T-cell female adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE T-cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR558ZSN] [Life stage: Adult]
NGEN035758 ENCODE Download 277,677 111,731,013 replicated peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR913OWV 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 7,135,083 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=From a donor with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR913OWV] [Life stage: Unknown]
NGEN035759 ENCODE Download 159,905 64,171,230 IDR thresholded peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR709QRD 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 3,433,924 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Life stage: Adult]
NGEN035760 ENCODE Download 73,627 27,375,278 IDR thresholded peaks hg38 HG03097 Cell line EFO:0010867 Blood ENCSR608KJD 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,659,128 02/04/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=HG03097;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG03097 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR608KJD] [Life stage: Unknown]
NGEN035761 ENCODE Download 160,319 53,326,108 pseudoreplicated peaks hg38 Psoas muscle Tissue UBERON:0008450 Skeletal Muscle ENCSR890DWH 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 4,239,652 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Psoas muscle tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=musculature;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Muscular Adult ENCODE Psoas muscle (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR890DWH] [Life stage: Adult]
NGEN035762 ENCODE Download 110,781 38,383,917 IDR thresholded peaks hg38 GM21390 Cell line CLO:0015884 Blood ENCSR024WOD 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,460,830 01/26/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM21390;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM21390 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024WOD] [Life stage: Unknown]
NGEN035763 ENCODE Download 232,401 85,023,522 pseudoreplicated peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR065CER 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,787,973 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR065CER] [Life stage: Adult]
NGEN035764 ENCODE Download 95,842 33,955,097 IDR thresholded peaks hg38 GM21576 Cell line CLO:0014097 Blood ENCSR122NDR 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,157,990 01/22/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM21576;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM21576 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR122NDR] [Life stage: Unknown]
NGEN035765 ENCODE Download 216,179 73,818,500 pseudoreplicated peaks hg38 Mucosa Tissue UBERON:0000317 Digestive ENCSR970UNF 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 5,644,931 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon;schema=BED6+4 Digestive Adult ENCODE Mucosa (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult]
NGEN035766 ENCODE Download 119,015 47,932,722 IDR thresholded peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR709QRD 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,577,834 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709QRD] [Life stage: Adult]
NGEN035767 ENCODE Download 163,882 52,581,602 conservative IDR thresholded peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR872WGW 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 3,496,876 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq conservative IDR thresholded peaks Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HCT116 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Unknown]
NGEN035768 ENCODE Download 79,559 28,114,958 IDR thresholded peaks hg38 Memory B cell Primary cell NTR:0000662 Blood ENCSR302PTB 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,754,128 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Memory B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Life stage: Adult]
NGEN035769 ENCODE Download 147,284 48,820,623 pseudoreplicated peaks hg38 CD8+ alpha-beta naive T cell Primary cell NTR:0000502 Blood ENCSR477YSU 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,880,562 10/08/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated naive CD8-positive, alpha-beta T cell;Experiment_date_released=10/13/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD8+ alpha-beta naive T cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR477YSU] [Life stage: Adult]
NGEN035770 ENCODE Download 204,450 83,614,965 IDR thresholded peaks hg38 Liver lobe Tissue UBERON:0001114 Liver ENCSR685ZMP 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 4,763,630 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Right lobe of liver tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right lobe of liver;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Adult ENCODE Liver lobe (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685ZMP] [Life stage: Adult]
NGEN035771 ENCODE Download 88,688 31,322,192 IDR thresholded peaks hg38 Natural killer cell Primary cell CL:0000623 Blood ENCSR044ATC 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,001,003 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Natural killer cell female adult (41 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Natural killer cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR044ATC] [Life stage: Adult]
NGEN035772 ENCODE Download 192,391 78,978,542 IDR thresholded peaks hg38 Lung Tissue UBERON:0002168 Lung ENCSR682ETE 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 4,351,295 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Left lung tissue female child (16 years);Lab=Michael Snyder, Stanford;System=respiratory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Left lung;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Respiratory Child ENCODE Lung (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR682ETE] [Life stage: Child]
NGEN035773 ENCODE Download 115,442 40,332,528 IDR thresholded peaks hg38 HG02852 Cell line EFO:0010851 Blood ENCSR368FYV 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,535,913 01/22/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=HG02852;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG02852 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR368FYV] [Life stage: Unknown]
NGEN035774 ENCODE Download 90,147 31,048,909 IDR thresholded peaks hg38 Memory B cell Primary cell NTR:0000662 Blood ENCSR302PTB 2 2_1 Not applicable ATAC-seq bed narrowPeak 1,976,525 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Stimulated activated memory B cell male adult (40 years) treated with 10 ?g/mL anti-IgM for 72 hours, 1 ?g/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated memory B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Memory B cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR302PTB] [Life stage: Adult]
NGEN035775 ENCODE Download 255,796 89,520,629 pseudoreplicated peaks hg38 PC-3 Cell line EFO:0002074 Male Reproductive ENCSR499ASS 2 2_1 Not applicable ATAC-seq bed narrowPeak 6,511,186 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Reproductive Unknown ENCODE PC-3 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR499ASS] [Life stage: Unknown]
NGEN035776 ENCODE Download 202,196 66,418,219 pseudoreplicated peaks hg38 GM18867 Cell line CLO:0026250 Blood ENCSR492FJO 1 1_1 Not applicable ATAC-seq bed narrowPeak 5,182,865 02/04/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM18867;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM18867 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR492FJO] [Life stage: Unknown]
NGEN035777 ENCODE Download 198,597 79,190,026 conservative IDR thresholded peaks hg38 HepG2 Cell line EFO:0001187 Liver ENCSR291GJU 1, 2, 3 1_1, 2_1, 3_1 Not applicable ATAC-seq bed narrowPeak 4,425,691 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq conservative IDR thresholded peaks Biosample_summary=HepG2;Lab=Michael Snyder, Stanford;System=digestive system,exocrine system,endocrine system;Submitted_track_name=rep1_vs_rep3.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HepG2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR291GJU] [Life stage: Unknown]
NGEN035778 ENCODE Download 73,251 25,503,003 IDR thresholded peaks hg38 Naive B cell Primary cell CL:0000788 Blood ENCSR685OFR 1 1_1 Not applicable ATAC-seq bed narrowPeak 1,673,129 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Naive B cell female adult (39 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Naive B cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR685OFR] [Life stage: Adult]
NGEN035779 ENCODE Download 537 183,687 IDR thresholded peaks hg38 T-cell Primary cell CL:0000084 Immune ENCSR032MEH 2 2_1 Not applicable ATAC-seq bed narrowPeak 11,993 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=T-cell male adult (43 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Lymphatic Adult ENCODE T-cell (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032MEH] [Life stage: Adult]
NGEN035780 ENCODE Download 180,968 71,391,277 IDR thresholded peaks hg38 GM23338 Cell line EFO:0007950 iPSC ENCSR485TLP 3 3_1 Not applicable ATAC-seq bed narrowPeak 4,015,366 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep3-pr1_vs_rep3-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Stem Cell Unknown ENCODE GM23338 (repl. 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR485TLP] [Life stage: Unknown]
NGEN035781 ENCODE Download 126,968 42,663,549 replicated peaks hg38 T-cell Primary cell CL:0000084 Immune ENCSR977LVI 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 3,263,469 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=T-cell female adult (21 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Lymphatic Adult ENCODE T-cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR977LVI] [Life stage: Adult]
NGEN035782 ENCODE Download 184,694 72,453,311 conservative IDR thresholded peaks hg38 PC-3 Cell line EFO:0002074 Male Reproductive ENCSR499ASS 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 4,127,571 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq conservative IDR thresholded peaks Biosample_summary=PC-3;Lab=Michael Snyder, Stanford;System=reproductive system;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Reproductive Unknown ENCODE PC-3 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR499ASS] [Life stage: Unknown]
NGEN035783 ENCODE Download 105,065 36,965,433 IDR thresholded peaks hg38 Sigmoid colon Tissue UBERON:0001159 Digestive ENCSR846VLJ 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,319,195 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Sigmoid colon tissue female adult (53 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Adult ENCODE Sigmoid colon (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR846VLJ] [Life stage: Adult]
NGEN035784 ENCODE Download 137,581 42,326,415 IDR thresholded peaks hg38 Panc1 Cell line EFO:0002713 Digestive ENCSR591PIX 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 2,889,095 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE Panc1 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Life stage: Unknown]
NGEN035785 ENCODE Download 134,958 48,171,695 IDR thresholded peaks hg38 CD8+ alpha-beta effector memory cell Primary cell NTR:0000668 Blood ENCSR335LHS 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 3,051,800 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated effector memory CD8-positive, alpha-beta T cell;Experi Cardiovascular Adult ENCODE CD8+ alpha-beta effector memory cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR335LHS] [Life stage: Adult]
NGEN035786 ENCODE Download 98,025 34,111,745 IDR thresholded peaks hg38 GM19023 Cell line EFO:0010835 Blood ENCSR512FHU 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,140,523 02/01/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM19023;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM19023 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR512FHU] [Life stage: Unknown]
NGEN035787 ENCODE Download 63,083 22,103,265 IDR thresholded peaks hg38 CD8+ alpha-beta memory T cell Primary cell CL:0000907 Blood ENCSR165FYY 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 1,407,128 10/07/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Central memory CD8-positive, alpha-beta T cell;Experiment_date_released=06/08/2022;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE CD8+ alpha-beta memory T cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR165FYY] [Life stage: Adult]
NGEN035788 ENCODE Download 211,544 66,481,707 replicated peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR872WGW 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,360,430 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HCT116 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Unknown]
NGEN035789 ENCODE Download 237,760 86,375,886 replicated peaks hg38 Mucosa Tissue UBERON:0000317 Digestive ENCSR970UNF 1, 2 1_1, 1_2, 2_1, 2_2 Not applicable ATAC-seq bed narrowPeak 6,490,828 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq replicated peaks Biosample_summary=Colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/20/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;premapping_cell_type=Mucosa;tissue_of_origin=Colon;schema=BED6+4 Digestive Adult ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult]
NGEN035790 ENCODE Download 167,173 70,440,796 IDR thresholded peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR131HOY 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 3,603,530 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Female adult with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR131HOY] [Life stage: Adult]
NGEN035791 ENCODE Download 86,724 32,375,345 IDR thresholded peaks hg38 HG03565 Cell line EFO:0010888 Blood ENCSR835WBW 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,003,042 01/26/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=HG03565;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG03565 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR835WBW] [Life stage: Unknown]
NGEN035792 ENCODE Download 90,588 32,780,245 IDR thresholded peaks hg38 T-cell Primary cell NTR:0000537 Blood ENCSR993XED 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,009,761 06/21/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Activated T-cell;Experiment_date_released=06/24/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993XED] [Life stage: Adult]
NGEN035793 ENCODE Download 129,779 40,177,181 pseudoreplicated peaks hg38 A549 Cell line EFO:0001086 Lung ENCSR220ASC 2 2_1 Not applicable ATAC-seq bed narrowPeak 3,278,602 09/29/2020 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=A549;Lab=Tim Reddy, Duke;System=respiratory system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=04/23/2018;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Respiratory Unknown ENCODE A549 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR220ASC] [Life stage: Unknown]
NGEN035794 ENCODE Download 107,020 33,355,346 IDR thresholded peaks hg38 Panc1 Cell line EFO:0002713 Digestive ENCSR591PIX 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,255,130 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE Panc1 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591PIX] [Life stage: Unknown]
NGEN035795 ENCODE Download 214,911 67,351,055 pseudoreplicated peaks hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR872WGW 1, 2 1_1, 2_1 Not applicable ATAC-seq bed narrowPeak 5,433,065 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=HCT116;Lab=Michael Snyder, Stanford;System=digestive system;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=10/08/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Digestive Unknown ENCODE HCT116 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR872WGW] [Life stage: Unknown]
NGEN035796 ENCODE Download 132,352 52,029,244 IDR thresholded peaks hg38 Lower motor neurons In vitro differentiated cells CL:0000100 Blood ENCSR065CER 2 2_1 Not applicable ATAC-seq bed narrowPeak 2,887,730 10/13/2020 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Male adult (49 years) with amyotrophic lateral sclerosis; motor neuron;Lab=Michael Snyder, Stanford;System=central nervous system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Motor neuron;Experiment_date_released=08/24/2021;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Lower motor neurons (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR065CER] [Life stage: Adult]
NGEN035797 ENCODE Download 156,054 63,970,909 IDR thresholded peaks hg38 Cardiac atrium Tissue UBERON:0002078 Heart ENCSR177JWR 1 1_1, 1_2 Not applicable ATAC-seq bed narrowPeak 3,480,515 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=Right cardiac atrium tissue female adult (59 years);Lab=Michael Snyder, Stanford;System=circulatory system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;previous_filer_cell_type=Right cardiac atrium;Experiment_date_released=08/17/2020;File_analysis_title=ENCODE4 v1.8.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Cardiac atrium (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR177JWR] [Life stage: Adult]
NGEN035798 ENCODE Download 114,748 37,495,443 pseudoreplicated peaks hg38 Memory B cell Primary cell CL:0000787 Blood ENCSR610AQP 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,016,050 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Memory B cell male adult (40 years);Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Memory B cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR610AQP] [Life stage: Adult]
NGEN035799 ENCODE Download 191,438 63,252,534 pseudoreplicated peaks hg38 Naive B cell Primary cell NTR:0000661 Blood ENCSR653VSR 2 2_1 Not applicable ATAC-seq bed narrowPeak 4,910,493 08/31/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Stimulated activated naive B cell female adult (39 years) treated with 1 ?g/mL anti-CD40 for 72 hours, 10 ?g/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;previous_filer_cell_type=Stimulated activated naive B cell;Experiment_date_released=09/09/2021;File_analysis_title=ENCODE4 v1.10.0 GRCh38;schema=BED6+4 Cardiovascular Adult ENCODE Naive B cell (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR653VSR] [Life stage: Adult]
NGEN035800 ENCODE Download 118,366 40,671,340 IDR thresholded peaks hg38 GM21723 Cell line CLO:0014886 Blood ENCSR233HSC 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,591,336 02/02/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM21723;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM21723 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR233HSC] [Life stage: Unknown]
NGEN035801 ENCODE Download 149,919 50,748,832 pseudoreplicated peaks hg38 HG02588 Cell line EFO:0010842 Blood ENCSR189VFC 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,831,900 02/01/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=HG02588;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE HG02588 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR189VFC] [Life stage: Unknown]
NGEN035802 ENCODE Download 145,216 50,135,210 pseudoreplicated peaks hg38 Omental fat pad Tissue UBERON:0010414 Adipose ENCSR788TRR 1 1_1 Not applicable ATAC-seq bed narrowPeak 3,797,190 02/25/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=Omental fat pad tissue female adult (51 years);Lab=Michael Snyder, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Project=EN-TEx;Experiment_date_released=06/15/2016;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Integumentary Adult ENCODE Omental fat pad (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR788TRR] [Life stage: Adult]
NGEN035803 ENCODE Download 190,270 62,086,851 pseudoreplicated peaks hg38 GM12878 Cell line EFO:0002784 Blood ENCSR095QNB 2 2_1 Not applicable ATAC-seq bed narrowPeak 4,880,170 02/24/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM12878;Lab=Michael Snyder, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM12878 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR095QNB] [Life stage: Unknown]
NGEN035804 ENCODE Download 268,415 102,693,007 pseudoreplicated peaks hg38 GM23338 Cell line EFO:0007950 iPSC ENCSR485TLP 1 1_1 Not applicable ATAC-seq bed narrowPeak 7,074,014 03/16/2021 08/22/2024 Accessible chromatin ATAC-seq pseudoreplicated peaks Biosample_summary=GM23338;Lab=Michael Snyder, Stanford;System=integumental system;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb;Experiment_date_released=08/05/2020;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Stem Cell Unknown ENCODE GM23338 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR485TLP] [Life stage: Unknown]
NGEN035805 ENCODE Download 101,795 35,398,706 IDR thresholded peaks hg38 GM19452 Cell line CLO:0026846 Blood ENCSR454UTH 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,237,815 02/04/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM19452;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM19452 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR454UTH] [Life stage: Unknown]
NGEN035806 ENCODE Download 102,724 35,723,473 IDR thresholded peaks hg38 GM19035 Cell line CLO:0025816 Blood ENCSR637MUF 1 1_1 Not applicable ATAC-seq bed narrowPeak 2,260,026 02/02/2021 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=GM19035;Lab=Stephen Montgomery, Stanford;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=02/11/2021;File_analysis_title=ENCODE4 v1.9.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE GM19035 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR637MUF] [Life stage: Unknown]
NGEN035807 ENCODE Download 41,451 14,570,934 IDR thresholded peaks hg38 K562 Cell line EFO:0002067 Blood ENCSR859USB 2 2_1 Not applicable ATAC-seq bed narrowPeak 967,059 03/02/2022 08/22/2024 Accessible chromatin ATAC-seq IDR thresholded peaks Biosample_summary=K562;Lab=Will Greenleaf, Stanford;System=immune system;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb;Experiment_date_released=04/26/2022;File_analysis_title=ENCODE4 v2.1.1 GRCh38;schema=BED6+4 Cardiovascular Unknown ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR859USB] [Life stage: Unknown]
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