Browse FILER

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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN000437 ENCODE Download 61,509 645,358 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR096IJV 1 1_1 IGF2BP3 iCLIP bed narrowPeak 1,179,279 6/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284819;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2014-09-03;Submitted_track_name=IMP3_A.peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab c Cardiovascular Adult ENCODE K562 (repl. 1) iCLIP IGF2BP3 peaks (narrowPeak) [Experiment: ENCSR096IJV] [Life stage: Adult]
NGEN000438 ENCODE Download 74,998 738,165 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR096IJV 2 2_1 IGF2BP3 iCLIP bed narrowPeak 1,426,781 6/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284819;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2014-09-03;Submitted_track_name=IMP3_B.peaks.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab c Cardiovascular Adult ENCODE K562 (repl. 2) iCLIP IGF2BP3 peaks (narrowPeak) [Experiment: ENCSR096IJV] [Life stage: Adult]
NGEN003830 ENCODE Download 6,117 236,406 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR961WWI 2 2_1 EIF4G1 iCLIP bed narrowPeak 151,909 9/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284980;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-05-18;Submitted_track_name=E006_NoIndex_L001_R1.RSRclip47_EIF4G1_rep2.polyATrim.adapterTrim.rmRep.rg.sorted.rmDup.sorted.peaks.fixed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims= Cardiovascular Adult ENCODE K562 (repl. 2) iCLIP EIF4G1 peaks (narrowPeak) [Experiment: ENCSR961WWI] [Life stage: Adult]
NGEN004997 ENCODE Download 1,138 45,404 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR984SOD 2 2_1 FUBP1 iCLIP bed narrowPeak 29,204 9/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284985;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-10-31;Submitted_track_name=7_NoIndex_L007_R1.R06_FUBP1_b.polyATrim.adapterTrim.rmRep.rg.sorted.rmDup.sorted.peaks.fixed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system Cardiovascular Adult ENCODE K562 (repl. 2) iCLIP FUBP1 peaks (narrowPeak) [Experiment: ENCSR984SOD] [Life stage: Adult]
NGEN006701 ENCODE Download 740 26,409 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR984SOD 1 1_1 FUBP1 iCLIP bed narrowPeak 18,646 9/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284985;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-10-31;Submitted_track_name=6_NoIndex_L006_R1.R05_FUBP1.polyATrim.adapterTrim.rmRep.rg.sorted.rmDup.sorted.peaks.fixed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;E Cardiovascular Adult ENCODE K562 (repl. 1) iCLIP FUBP1 peaks (narrowPeak) [Experiment: ENCSR984SOD] [Life stage: Adult]
NGEN013237 ENCODE Download 2,096 72,773 peaks hg19 K562 Cell line EFO:0002067 Blood ENCSR961WWI 1 1_1 EIF4G1 iCLIP bed narrowPeak 51,551 9/30/2014 08/22/2024 RBP binding sites iCLIP peaks Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284980;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-05-18;Submitted_track_name=E006_NoIndex_L001_R1.RSRclip45_EIF4G1_rep1.polyATrim.adapterTrim.rmRep.rg.sorted.rmDup.sorted.peaks.fixed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims= Cardiovascular Adult ENCODE K562 (repl. 1) iCLIP EIF4G1 peaks (narrowPeak) [Experiment: ENCSR961WWI] [Life stage: Adult]
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