Browse FILER

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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN000034 ENCODE Download 150,822 6,502,219,004 clusters hg19 A549 Cell line EFO:0001086 Lung ENCSR000BCY 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 4,953,816 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=A549;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCY] [Orig: Biosample_summary=A549;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000035 ENCODE Download 140,417 5,980,422,502 clusters hg19 A549 Cell line EFO:0001086 Lung ENCSR000BCW 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 4,656,104 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=A549 cytosolic fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCW] [Orig: Biosample_summary=A549 cytosolic fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000036 ENCODE Download 141,294 5,423,643,057 clusters hg19 A549 Cell line EFO:0001086 Lung ENCSR000BCX 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 4,687,652 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=A549 nuclear fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCX] [Orig: Biosample_summary=A549 nuclear fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetA549NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000037 ENCODE Download 24,596 4,696,175,439 clusters hg19 GM12878 Cell line EFO:0002784 Blood ENCSR000BCA 1 1_1 Not applicable RNA-PET bed bed12 618,751 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCA] [Orig: Biosample_summary=GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000038 ENCODE Download 365,587 10,358,883,796 clusters hg19 GM12878 Cell line EFO:0002784 Blood ENCSR000BCA 1 1_1 Not applicable RNA-PET bed bed12 7,476,337 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCA] [Orig: Biosample_summary=GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000039 ENCODE Download 95,096 11,351,165,649 clusters hg19 GM12878 Cell line EFO:0002784 Blood ENCSR000BCB 1 1_1 Not applicable RNA-PET bed bed12 2,372,060 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=GM12878 nuclear fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCB] [Orig: Biosample_summary=GM12878 nuclear fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetGm12878NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000040 ENCODE Download 145,616 5,404,492,814 clusters hg19 H1-hESC Stem cell EFO:0003042 Embryo ENCSR000BCC 1 1_1 Not applicable RNA-PET bed bed12 3,137,722 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=H1;Lab=Yijun Ruan, JAX;Submitted_track_name=wgEncodeGisRnaPetH1hescCellPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell Embryo Embryonic ENCODE H1-hESC (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCC] [Orig: Biosample_summary=H1;Lab=Yijun Ruan, JAX;Submitted_track_name=wgEncodeGisRnaPetH1hescCellPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_life_stage=Stem Cell] [Life stage: Embryonic]
NGEN000041 ENCODE Download 214,926 3,875,393,893 clusters hg19 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR000BCS 1 1_1 Not applicable RNA-PET bed bed12 4,507,406 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3CellPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCS] [Orig: Biosample_summary=HeLa-S3;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3CellPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000042 ENCODE Download 72,153 1,316,632,535 clusters hg19 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR000BCR 1 1_1 Not applicable RNA-PET bed bed12 1,436,336 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=HeLa-S3 cytosolic fraction;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCR] [Orig: Biosample_summary=HeLa-S3 cytosolic fraction;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000043 ENCODE Download 319,110 8,565,558,985 clusters hg19 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR000BCQ 1 1_1 Not applicable RNA-PET bed bed12 5,082,692 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=HeLa-S3 nuclear fraction;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCQ] [Orig: Biosample_summary=HeLa-S3 nuclear fraction;Lab=Yijun Ruan, JAX;System=reproductive system;Submitted_track_name=wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000044 ENCODE Download 58,356 6,385,332,300 clusters hg19 HepG2 Cell line EFO:0001187 Liver ENCSR000BCE 1 1_1 Not applicable RNA-PET bed bed12 1,469,262 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=HepG2 cytosolic fraction;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeGisRnaPetHepg2CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Digestive Unknown ENCODE HepG2 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCE] [Orig: Biosample_summary=HepG2 cytosolic fraction;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeGisRnaPetHepg2CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000045 ENCODE Download 92,213 9,147,637,954 clusters hg19 HepG2 Cell line EFO:0001187 Liver ENCSR000BCF 1 1_1 Not applicable RNA-PET bed bed12 2,276,145 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=HepG2 nuclear fraction;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeGisRnaPetHepg2NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Digestive Unknown ENCODE HepG2 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCF] [Orig: Biosample_summary=HepG2 nuclear fraction;Lab=Yijun Ruan, JAX;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeGisRnaPetHepg2NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000046 ENCODE Download 449,908 14,859,982,429 clusters hg19 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR000BCP 1 1_1 Not applicable RNA-PET bed bed12 8,351,237 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=Endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Yijun Ruan, JAX;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCP] [Orig: Biosample_summary=Endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Yijun Ruan, JAX;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Endothelial cell;tissue_of_or
NGEN000047 ENCODE Download 104,759 2,032,319,752 clusters hg19 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR000BCD 1 1_1 Not applicable RNA-PET bed bed12 2,243,739 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=Endothelial cell of umbilical vein nuclear fraction male newborn;Lab=Yijun Ruan, JAX;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeGisRnaPetHuvecNucleusPapClustersRep1.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCD] [Orig: Biosample_summary=Endothelial cell of umbilical vein nuclear fraction male newborn;Lab=Yijun Ruan, JAX;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeGisRnaPetHuvecNucleusPapClustersRep1.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Endothelial cell;tissue_of_origin
NGEN000048 ENCODE Download 78,633 3,569,211,053 clusters hg19 IMR-90 Cell line EFO:0001196 Lung ENCSR000BCT 1, 2 1_1 ,2_1 Not applicable RNA-PET bed bed12 2,625,288 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=IMR-90;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BCT] [Orig: Biosample_summary=IMR-90;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000049 ENCODE Download 102,150 4,589,001,952 clusters hg19 IMR-90 Cell line EFO:0001196 Lung ENCSR000BCZ 1, 2 1_1 ,2_1 Not applicable RNA-PET bed bed12 3,392,052 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=IMR-90 cytosolic fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BCZ] [Orig: Biosample_summary=IMR-90 cytosolic fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000050 ENCODE Download 97,272 3,596,743,237 clusters hg19 IMR-90 Cell line EFO:0001196 Lung ENCSR000BDA 1, 2 1_1 ,2_1 Not applicable RNA-PET bed bed12 3,287,468 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=IMR-90 nuclear fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Respiratory Unknown ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BDA] [Orig: Biosample_summary=IMR-90 nuclear fraction;Lab=Yijun Ruan, JAX;System=respiratory system;Submitted_track_name=wgEncodeGisRnaPetImr90NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000051 ENCODE Download 35,203 1,728,764,649 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCG 1 1_1 Not applicable RNA-PET bed bed12 818,835 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 chromatin fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562ChromatinTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCG] [Orig: Biosample_summary=K562 chromatin fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562ChromatinTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000052 ENCODE Download 246,466 7,778,511,796 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCH 1 1_1 Not applicable RNA-PET bed bed12 5,201,648 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCH] [Orig: Biosample_summary=K562 cytosolic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562CytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000053 ENCODE Download 30,185 1,870,577,265 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCI 1 1_1 Not applicable RNA-PET bed bed12 727,301 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 nucleolus fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleolusTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCI] [Orig: Biosample_summary=K562 nucleolus fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleolusTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000054 ENCODE Download 1,023 36,907,319 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCJ 1 1_1 Not applicable RNA-PET bed bed12 24,503 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 nucleoplasmic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCJ] [Orig: Biosample_summary=K562 nucleoplasmic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000055 ENCODE Download 69,225 6,473,822,507 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCK 1 1_1 Not applicable RNA-PET bed bed12 1,717,214 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 nuclear fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCK] [Orig: Biosample_summary=K562 nuclear fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562NucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000056 ENCODE Download 88,995 13,882,272,364 clusters hg19 K562 Cell line EFO:0002067 Blood ENCSR000BCL 1 1_1 Not applicable RNA-PET bed bed12 2,258,656 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=K562 polysomic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562PolysomePapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Cardiovascular Unknown ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCL] [Orig: Biosample_summary=K562 polysomic fraction;Lab=Yijun Ruan, JAX;System=immune system;Submitted_track_name=wgEncodeGisRnaPetK562PolysomePapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000057 ENCODE Download 87,185 2,993,307,648 clusters hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BDD 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 2,896,435 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDD] [Orig: Biosample_summary=MCF-7;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7CellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000058 ENCODE Download 68,043 2,430,602,513 clusters hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BDB 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 2,283,637 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=MCF-7 cytosolic fraction;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDB] [Orig: Biosample_summary=MCF-7 cytosolic fraction;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7CytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000059 ENCODE Download 1,953 31,097,152 clusters hg19 MCF-7 Cell line EFO:0001203 Breast ENCSR000BDC 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 72,228 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=MCF-7 nuclear fraction;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Reproductive Unknown ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDC] [Orig: Biosample_summary=MCF-7 nuclear fraction;Lab=Yijun Ruan, JAX;System=integumental system,exocrine system;Submitted_track_name=wgEncodeGisRnaPetMcf7NucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000060 ENCODE Download 220,623 7,194,721,523 clusters hg19 Keratinocyte Primary cell CL:0000312 Skin ENCSR000BCM 1 1_1 Not applicable RNA-PET bed bed12 4,657,529 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=Keratinocyte cytosolic fraction female;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=wgEncodeGisRnaPetNhekCytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Integumentary Unknown ENCODE Keratinocyte (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCM] [Orig: Biosample_summary=Keratinocyte cytosolic fraction female;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=wgEncodeGisRnaPetNhekCytosolPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000061 ENCODE Download 216,227 6,732,648,317 clusters hg19 Keratinocyte Primary cell CL:0000312 Skin ENCSR000BCN 1 1_1 Not applicable RNA-PET bed bed12 4,515,873 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=Keratinocyte nuclear fraction female;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=wgEncodeGisRnaPetNhekNucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19 Integumentary Unknown ENCODE Keratinocyte (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCN] [Orig: Biosample_summary=Keratinocyte nuclear fraction female;Lab=Yijun Ruan, JAX;System=integumental system;Submitted_track_name=wgEncodeGisRnaPetNhekNucleusPapClustersRep1.bigBed;Experiment_date_released=10/17/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000063 ENCODE Download 90,780 3,864,632,485 clusters hg19 SK-N-SH Cell line EFO:0003072 Brain ENCSR000BCV 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 3,001,110 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshCellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Nervous Unknown ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCV] [Orig: Biosample_summary=SK-N-SH;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshCellPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000064 ENCODE Download 88,580 3,714,195,852 clusters hg19 SK-N-SH Cell line EFO:0003072 Brain ENCSR000BCU 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 2,928,253 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=SK-N-SH cytosolic fraction;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshCytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Nervous Unknown ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCU] [Orig: Biosample_summary=SK-N-SH cytosolic fraction;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshCytosolPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
NGEN000065 ENCODE Download 72,726 2,181,090,755 clusters hg19 SK-N-SH Cell line EFO:0003072 Brain ENCSR000BDE 3, 4 3_1 ,4_1 Not applicable RNA-PET bed bed12 2,507,186 3/27/12 02/19/19 Clusters RNA-PET clusters Biosample_summary=SK-N-SH nuclear fraction;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshNucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19 Nervous Unknown ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDE] [Orig: Biosample_summary=SK-N-SH nuclear fraction;Lab=Yijun Ruan, JAX;System=central nervous system;Submitted_track_name=wgEncodeGisRnaPetSknshNucleusPapClusters.bedCluster.bigBed;Experiment_date_released=08/14/2012;File_analysis_title=Lab custom hg19] [Life stage: Unknown]
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