Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN000034 | ENCODE | Download | 150,822 | 6,502,219,004 | clusters | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000BCY | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 4,953,816 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens A549;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM1006902,UCSC-ENCODE-hg19:wgEncodeEH002929;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetA549CellPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A | Respiratory | Adult | ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCY] [Life stage: Adult] |
| NGEN000035 | ENCODE | Download | 140,417 | 5,980,422,502 | clusters | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000BCW | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 4,656,104 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens A549 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM1006909,UCSC-ENCODE-hg19:wgEncodeEH002927;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetA549CytosolPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_bio | Respiratory | Adult | ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCW] [Life stage: Adult] |
| NGEN000036 | ENCODE | Download | 141,294 | 5,423,643,057 | clusters | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000BCX | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 4,687,652 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens A549 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM1006903,UCSC-ENCODE-hg19:wgEncodeEH002928;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetA549NucleusPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosa | Respiratory | Adult | ENCODE A549 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCX] [Life stage: Adult] |
| NGEN000037 | ENCODE | Download | 24,596 | 4,696,175,439 | clusters | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000BCA | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 618,751 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000248,GEO:GSM830535;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;EN | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCA] [Life stage: Adult] |
| NGEN000038 | ENCODE | Download | 365,587 | 10,358,883,796 | clusters | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000BCA | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 7,476,337 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens GM12878 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000248,GEO:GSM830535;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system; | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCA] [Life stage: Adult] |
| NGEN000039 | ENCODE | Download | 95,096 | 11,351,165,649 | clusters | hg19 | GM12878 | Cell line | EFO:0002784 | Blood | ENCSR000BCB | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 2,372,060 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens GM12878 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM830534,UCSC-ENCODE-hg19:wgEncodeEH000249;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetGm12878NucleusPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCO | Cardiovascular | Adult | ENCODE GM12878 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCB] [Life stage: Adult] |
| NGEN000040 | ENCODE | Download | 145,616 | 5,404,492,814 | clusters | hg19 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR000BCC | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 3,137,722 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens H1;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000250,GEO:GSM830532;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetH1hescCellPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=Lab cust | Embryo | Embryonic | ENCODE H1-hESC (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCC] [Life stage: Embryonic] |
| NGEN000041 | ENCODE | Download | 214,926 | 3,875,393,893 | clusters | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BCS | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 4,507,406 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens HeLa-S3;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001744,GEO:GSM830530;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHelas3CellPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosampl | Reproductive | Adult | ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCS] [Life stage: Adult] |
| NGEN000042 | ENCODE | Download | 72,153 | 1,316,632,535 | clusters | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BCR | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 1,436,336 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens HeLa-S3 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM830533,UCSC-ENCODE-hg19:wgEncodeEH000268;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHelas3CytosolPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive | Reproductive | Adult | ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCR] [Life stage: Adult] |
| NGEN000043 | ENCODE | Download | 319,110 | 8,565,558,985 | clusters | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BCQ | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 5,082,692 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens HeLa-S3 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM1006914,UCSC-ENCODE-hg19:wgEncodeEH000267;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive | Reproductive | Adult | ENCODE HeLa-S3 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCQ] [Life stage: Adult] |
| NGEN000044 | ENCODE | Download | 58,356 | 6,385,332,300 | clusters | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000BCE | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 1,469,262 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens HepG2 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000252,GEO:GSM830525;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHepg2CytosolPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,di | Digestive | Child | ENCODE HepG2 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCE] [Life stage: Child] |
| NGEN000045 | ENCODE | Download | 92,213 | 9,147,637,954 | clusters | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000BCF | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 2,276,145 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens HepG2 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSM830531,UCSC-ENCODE-hg19:wgEncodeEH000253;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHepg2NucleusPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,dige | Digestive | Child | ENCODE HepG2 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCF] [Life stage: Child] |
| NGEN000046 | ENCODE | Download | 449,908 | 14,859,982,429 | clusters | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000BCP | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 8,351,237 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens endothelial cell of umbilical vein cytosolic fraction male newborn;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000266,GEO:GSM1006915;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endo | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCP] [Life stage: Newborn] |
| NGEN000047 | ENCODE | Download | 104,759 | 2,032,319,752 | clusters | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000BCD | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 2,243,739 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens endothelial cell of umbilical vein nuclear fraction male newborn;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000251,GEO:GSM830519;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetHuvecNucleusPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=endothelial cell of umbilical vein;ENCODE_cell_slims=endotheli | Embryo | Newborn | ENCODE Endothelial cell (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCD] [Life stage: Newborn] |
| NGEN000048 | ENCODE | Download | 78,633 | 3,569,211,053 | clusters | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000BCT | 1, 2 | 1_1 ,2_1 | Not applicable | RNA-PET | bed bed12 | 2,625,288 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens IMR-90;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002924,GEO:GSM1006908;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetImr90CellPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims=respiratory system;E | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BCT] [Life stage: Embryonic] |
| NGEN000049 | ENCODE | Download | 102,150 | 4,589,001,952 | clusters | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000BCZ | 1, 2 | 1_1 ,2_1 | Not applicable | RNA-PET | bed bed12 | 3,392,052 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens IMR-90 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002930,GEO:GSM1006911;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetImr90CytosolPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slim | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BCZ] [Life stage: Embryonic] |
| NGEN000050 | ENCODE | Download | 97,272 | 3,596,743,237 | clusters | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000BDA | 1, 2 | 1_1 ,2_1 | Not applicable | RNA-PET | bed bed12 | 3,287,468 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens IMR-90 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002931,GEO:GSM1006913;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetImr90NucleusPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=IMR-90;ENCODE_cell_slims=fibroblast,connective tissue cell;ENCODE_system_slims= | Respiratory | Embryonic | ENCODE IMR-90 (repl. 1, 2) RNA-PET clusters (bed12) [Experiment: ENCSR000BDA] [Life stage: Embryonic] |
| NGEN000051 | ENCODE | Download | 35,203 | 1,728,764,649 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCG | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 818,835 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 chromatin fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000254,GEO:GSM830536;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562ChromatinTotalClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immu | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCG] [Life stage: Adult] |
| NGEN000052 | ENCODE | Download | 246,466 | 7,778,511,796 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCH | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 5,201,648 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSM830537,UCSC-ENCODE-hg19:wgEncodeEH000255;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562CytosolPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune s | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCH] [Life stage: Adult] |
| NGEN000053 | ENCODE | Download | 30,185 | 1,870,577,265 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCI | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 727,301 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 nucleolus fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000256,GEO:GSM830521;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562NucleolusTotalClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immu | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCI] [Life stage: Adult] |
| NGEN000054 | ENCODE | Download | 1,023 | 36,907,319 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCJ | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 24,503 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 nucleoplasmic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000257,GEO:GSM830524;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slim | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCJ] [Life stage: Adult] |
| NGEN000055 | ENCODE | Download | 69,225 | 6,473,822,507 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCK | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 1,717,214 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000258,GEO:GSM830526;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562NucleusPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune sys | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCK] [Life stage: Adult] |
| NGEN000056 | ENCODE | Download | 88,995 | 13,882,272,364 | clusters | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BCL | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 2,258,656 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens K562 polysomic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSM830527,UCSC-ENCODE-hg19:wgEncodeEH000259;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetK562PolysomePapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune | Cardiovascular | Adult | ENCODE K562 (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCL] [Life stage: Adult] |
| NGEN000057 | ENCODE | Download | 87,185 | 2,993,307,648 | clusters | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BDD | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 2,896,435 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens MCF-7;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002934,GEO:GSM1006905;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetMcf7CellPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental syst | Reproductive | Adult | ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDD] [Life stage: Adult] |
| NGEN000058 | ENCODE | Download | 68,043 | 2,430,602,513 | clusters | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BDB | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 2,283,637 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens MCF-7 cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002932,GEO:GSM1006904;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetMcf7CytosolPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine sy | Reproductive | Adult | ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDB] [Life stage: Adult] |
| NGEN000059 | ENCODE | Download | 1,953 | 31,097,152 | clusters | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000BDC | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 72,228 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens MCF-7 nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSM1006912,UCSC-ENCODE-hg19:wgEncodeEH002933;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetMcf7NucleusPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine syst | Reproductive | Adult | ENCODE MCF-7 (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDC] [Life stage: Adult] |
| NGEN000060 | ENCODE | Download | 220,623 | 7,194,721,523 | clusters | hg19 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000BCM | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 4,657,529 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens keratinocyte cytosolic fraction female;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000260,GEO:GSM830522;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetNhekCytosolPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumen | Integumentary | Unknown | ENCODE Keratinocyte (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCM] [Life stage: Unknown] |
| NGEN000061 | ENCODE | Download | 216,227 | 6,732,648,317 | clusters | hg19 | Keratinocyte | Primary cell | CL:0000312 | Skin | ENCSR000BCN | 1 | 1_1 | Not applicable | RNA-PET | bed bed12 | 4,515,873 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens keratinocyte nuclear fraction female;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000261,GEO:GSM830523;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2011-10-17;Submitted_track_name=wgEncodeGisRnaPetNhekNucleusPapClustersRep1.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=integumenta | Integumentary | Unknown | ENCODE Keratinocyte (repl. 1) RNA-PET clusters (bed12) [Experiment: ENCSR000BCN] [Life stage: Unknown] |
| NGEN000063 | ENCODE | Download | 90,780 | 3,864,632,485 | clusters | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000BCV | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 3,001,110 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens SK-N-SH;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM1006910,UCSC-ENCODE-hg19:wgEncodeEH002926;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetSknshCellPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENC | Nervous | Child | ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCV] [Life stage: Child] |
| NGEN000064 | ENCODE | Download | 88,580 | 3,714,195,852 | clusters | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000BCU | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 2,928,253 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens SK-N-SH cytosolic fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM1006907,UCSC-ENCODE-hg19:wgEncodeEH002925;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetSknshCytosolPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=cent | Nervous | Child | ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BCU] [Life stage: Child] |
| NGEN000065 | ENCODE | Download | 72,726 | 2,181,090,755 | clusters | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000BDE | 3, 4 | 3_1 ,4_1 | Not applicable | RNA-PET | bed bed12 | 2,507,186 | 3/27/2012 | 02/19/2019 | Transcription | RNA-PET clusters | Biosample_summary=Homo sapiens SK-N-SH nuclear fraction;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002935,GEO:GSM1006906;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-08-14;Submitted_track_name=wgEncodeGisRnaPetSknshNucleusPapClusters.bedCluster.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=centra | Nervous | Child | ENCODE SK-N-SH (repl. 3, 4) RNA-PET clusters (bed12) [Experiment: ENCSR000BDE] [Life stage: Child] |
Showing records 1 to 31 out of 31
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