Browse FILER

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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN000429 ENCODE Download 1,187 366,636,115 chromatin interactions hg19 GM12878 Cell line EFO:0002784 Blood ENCSR000CYD Not reported Not reported Not applicable 5C bed bed12 29,213 6/5/2012 02/19/2019 Chromatin interactions 5C chromatin interactions Biosample_summary=Homo sapiens GM12878;Lab=Job Dekker, UMass;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM970499,UCSC-ENCODE-hg19:wgEncodeEH001665;Project=ENCODE;Award=R01HG003143;Experiment_date_released=2012-03-22;Submitted_track_name=wgEncodeUmassDekker5CGm12878PkV2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=B cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR Cardiovascular Adult ENCODE GM12878 5C chromatin interactions (bed12) [Experiment: ENCSR000CYD] [Life stage: Adult]
NGEN000430 ENCODE Download 1,238 397,039,704 chromatin interactions hg19 H1-hESC Stem cell EFO:0003042 Embryo ENCSR000CYC Not reported Not reported Not applicable 5C bed bed12 31,352 6/5/2012 02/19/2019 Chromatin interactions 5C chromatin interactions Biosample_summary=Homo sapiens H1;Lab=Job Dekker, UMass;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001666,GEO:GSM970498;Project=ENCODE;Award=R01HG003143;Experiment_date_released=2012-03-22;Submitted_track_name=wgEncodeUmassDekker5CH1hescPkV2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=stem cell,embryonic cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=Lab custom hg19;G Embryo Embryonic ENCODE H1-hESC 5C chromatin interactions (bed12) [Experiment: ENCSR000CYC] [Life stage: Embryonic]
NGEN000431 ENCODE Download 1,874 560,284,065 chromatin interactions hg19 HeLa-S3 Cell line EFO:0002791 Female Reproductive ENCSR000CYB Not reported Not reported Not applicable 5C bed bed12 44,382 6/5/2012 02/19/2019 Chromatin interactions 5C chromatin interactions Biosample_summary=Homo sapiens HeLa-S3;Lab=Job Dekker, UMass;ENCODE_internal_tags=NR;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSM970497,UCSC-ENCODE-hg19:wgEncodeEH001667;Project=ENCODE;Award=R01HG003143;Experiment_date_released=2012-03-22;Submitted_track_name=wgEncodeUmassDekker5CHelas3PkV2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_sy Reproductive Adult ENCODE HeLa-S3 5C chromatin interactions (bed12) [Experiment: ENCSR000CYB] [Life stage: Adult]
NGEN000432 ENCODE Download 1,726 525,760,566 chromatin interactions hg19 K562 Cell line EFO:0002067 Blood ENCSR000CYA Not reported Not reported Not applicable 5C bed bed12 41,663 6/5/2012 02/19/2019 Chromatin interactions 5C chromatin interactions Biosample_summary=Homo sapiens K562;Lab=Job Dekker, UMass;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSM970500,UCSC-ENCODE-hg19:wgEncodeEH001668;Project=ENCODE;Award=R01HG003143;Experiment_date_released=2012-03-22;Submitted_track_name=wgEncodeUmassDekker5CK562PkV2.bigBed;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_syn Cardiovascular Adult ENCODE K562 5C chromatin interactions (bed12) [Experiment: ENCSR000CYA] [Life stage: Adult]
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