NGADBZV3QUI3UO Download track ATACdb_v1.03 Insula ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZV3QUI3UO Data Source ATACdb_v1.03 Download track Download Number of intervals 76,942 bp covered 1,028,626 Output type transcription factor binding sites Genome build hg38 cell type Insula Biosample type Not applicable Biosamples term id UBERON:0002022 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,566,110 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0452_hg38_motif_binding_sites.bed.gz Processed file md5 3848550fd910bb65897a4e2bd3bc4e11 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0452_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0452_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0452;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=insula;Cancer_Type=Other;Region_Number=20716;Length=10950.088 kb;GEO_SRA=SRR5367710;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Nervous life stage Unknown trackName ATACdb_v1.03 Insula ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZVD65WJL2 Download track ATACdb_v1.03 HEK293 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZVD65WJL2 Data Source ATACdb_v1.03 Download track Download Number of intervals 146,998 bp covered 1,989,191 Output type transcription factor binding sites Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,004,353 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0098_hg38_motif_binding_sites.bed.gz Processed file md5 4112a172f5fb4e5947fdd239535dafb4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0098_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0098_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0098;Biosample_Type=Cell Line;Tissue_Type=Kidney;Biosample_Name=HEK293;Cancer_Type=Normal;Region_Number=42309;Length=18782.482 kb;GEO_SRA=SRR6418078;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Renal life stage Unknown trackName ATACdb_v1.03 HEK293 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZW47FQQDN Download track ATACdb_v1.03 Ishikawa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZW47FQQDN Data Source ATACdb_v1.03 Download track Download Number of intervals 44,097 bp covered 587,831 Output type transcription factor binding sites Genome build hg38 cell type Ishikawa Biosample type Cell line Biosamples term id EFO:0005718 Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,392,333 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0668_hg38_motif_binding_sites.bed.gz Processed file md5 dcca163dc8dcd63814b085bf0859b622 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0668_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0668_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0668;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Ishikawa;Cancer_Type=Endometrial cancer;Region_Number=10676;Length=3361.491 kb;GEO_SRA=SRR6653442;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 Ishikawa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZW643DWM4 Download track ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZW643DWM4 Data Source ATACdb_v1.03 Download track Download Number of intervals 3,733 bp covered 1,614,050 Output type accessible chromatin region Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 121,502 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0831_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f4873084f4cc76636c07a44b230ea7e4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0831_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0831_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0831.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0831.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 9a4187a551b8050820fe8f7142c0b9ab Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0831;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=3741;Length=1617.769 kb;GEO_SRA=SRR5839483;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZWWO42M5I Download track ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZWWO42M5I Data Source ATACdb_v1.03 Download track Download Number of intervals 6,932 bp covered 1,774,979 Output type accessible chromatin region Genome build hg38 cell type U2OS Biosample type Cell line Biosamples term id EFO:0002869 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 212,677 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0389_accessible_chromatin_regions_hg38.bed.gz Processed file md5 4c3f7e1cde5570b085375ed495db1699 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0389_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0389_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0389.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0389.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5115266d606994366001372284b8af7a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0389;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=6960;Length=1787.774 kb;GEO_SRA=SRR7699134;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Skeletal life stage Unknown trackName ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZX54VZH4K Download track ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZX54VZH4K Data Source ATACdb_v1.03 Download track Download Number of intervals 106,407 bp covered 1,407,433 Output type transcription factor binding sites Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,276,324 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0901_hg38_motif_binding_sites.bed.gz Processed file md5 03397baa4693218a48f7b5015c888a6c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0901_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0901_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0901;Biosample_Type=Primary Cell;Tissue_Type=Lymphoblastoid;Biosample_Name=B cell;Cancer_Type=Epstein-Barr Virus (EBV);Region_Number=18629;Length=9370.678 kb;GEO_SRA=SRR5826005;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanw system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZX5A2MRUF Download track ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZX5A2MRUF Data Source ATACdb_v1.03 Download track Download Number of intervals 57,311 bp covered 759,692 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,774,139 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1297_hg38_motif_binding_sites.bed.gz Processed file md5 737f2a4f8221b6c07604c906675d3136 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1297_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1297_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1297;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=12156;Length=4666.914 kb;GEO_SRA=SRR1556376;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZXFWSAHNH Download track ATACdb_v1.03 ME-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZXFWSAHNH Data Source ATACdb_v1.03 Download track Download Number of intervals 29,121 bp covered 8,346,065 Output type accessible chromatin region Genome build hg38 cell type ME-1 Biosample type Cell line Biosamples term id EFO:0006645 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 922,829 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0614_accessible_chromatin_regions_hg38.bed.gz Processed file md5 3ab5e5dd7274c20a40b4095c49153363 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0614_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0614_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0614.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0614.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ba86a3b3dc194d9a5af6f54921b415d6 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0614;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=ME-1;Cancer_Type=Leukemia;Region_Number=29143;Length=8339.099 kb;GEO_SRA=SRR5861512;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 ME-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZXL3UQICD Download track ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZXL3UQICD Data Source ATACdb_v1.03 Download track Download Number of intervals 102,669 bp covered 1,383,763 Output type transcription factor binding sites Genome build hg38 cell type Fibroblast Biosample type Cell line Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,313,904 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0953_hg38_motif_binding_sites.bed.gz Processed file md5 633c92931acf337a60d1352190a43a25 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0953_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0953_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0953;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=GM02171;Cancer_Type=Normal;Region_Number=31716;Length=9465.465 kb;GEO_SRA=SRR5878909;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZYGJJPCTP Download track ATACdb_v1.03 HUES64 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZYGJJPCTP Data Source ATACdb_v1.03 Download track Download Number of intervals 103,850 bp covered 75,902,676 Output type accessible chromatin region Genome build hg38 cell type HUES64 Biosample type Cell line Biosamples term id EFO:0007089 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 3,259,537 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0724_accessible_chromatin_regions_hg38.bed.gz Processed file md5 94e638c94660037d46ca2810bfd18f21 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0724_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0724_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0724.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0724.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 708d9825df98de63430470187897002c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0724;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HUES64;Cancer_Type=Normal;Region_Number=104007;Length=76019.702 kb;GEO_SRA=SRR6667571;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 HUES64 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBZZ56TA542 Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZZ56TA542 Data Source ATACdb_v1.03 Download track Download Number of intervals 12,978 bp covered 4,831,872 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 422,294 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1319_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c50d1a547c3e07dfd88f92d0a5f9b7f9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1319_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1319_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1319.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1319.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 89facffbd03fb01e3e9824cb42cc2a16 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1319;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=13005;Length=4841.033 kb;GEO_SRA=SRR891277;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZZKEFDKFE Download track ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZZKEFDKFE Data Source ATACdb_v1.03 Download track Download Number of intervals 235,094 bp covered 3,194,221 Output type transcription factor binding sites Genome build hg38 cell type T-helper 17 cell Biosample type Not applicable Biosamples term id CL:0000899 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,709,793 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0229_hg38_motif_binding_sites.bed.gz Processed file md5 aac20a2f874806abd9622ba4e39ad0f8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0229_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0229_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0229;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Th17;Cancer_Type=Normal;Region_Number=46037;Length=30136.739 kb;GEO_SRA=SRR7650759;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgem system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZZXJF6PTV Download track ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZZXJF6PTV Data Source ATACdb_v1.03 Download track Download Number of intervals 65,942 bp covered 37,319,671 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,093,631 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0041_accessible_chromatin_regions_hg38.bed.gz Processed file md5 001616eed16d743504fa9b0e826a45c6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0041_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0041_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0041.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0041.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8a0004716b931ed69be0ecef1d2a8721 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0041;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=66056;Length=37364.129 kb;GEO_SRA=SRR5343858;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZZYN6UKXL Download track ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZZYN6UKXL Data Source ATACdb_v1.03 Download track Download Number of intervals 108,952 bp covered 1,454,111 Output type transcription factor binding sites Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,376,978 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0074_hg38_motif_binding_sites.bed.gz Processed file md5 5044088d093a660cacd2e1cea9a45ee5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0074_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0074_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0074;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=19739;Length=10952.37 kb;GEO_SRA=SRR5417038;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZZYZDIQS7 Download track ATACdb_v1.03 WM1346 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZZYZDIQS7 Data Source ATACdb_v1.03 Download track Download Number of intervals 326,851 bp covered 4,489,487 Output type transcription factor binding sites Genome build hg38 cell type WM1346 Biosample type Cell line Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 12,165,883 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0401_hg38_motif_binding_sites.bed.gz Processed file md5 a8b6f5164da446004b733eb8705a9dde wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0401_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0401_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0401;Biosample_Type=Cell Line;Tissue_Type=Coronary artery smooth muscle;Biosample_Name=1346;Cancer_Type=Coronary artery disease;Region_Number=120272;Length=72829.398 kb;GEO_SRA=SRR7064064;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 WM1346 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGBEPEL3MFQLKAT3 Download track Nott_2019 PU.1+ Microglia Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPEL3MFQLKAT3 Data Source Nott_2019 Download track Download Number of intervals 44,092 bp covered 59,339,374 Output type enhancer peaks Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id CL:0000129 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Enhancer File format bed bed3-lifted File size 734,814 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz Processed file md5 bcca034e2608b698ab6e3ecb4f9da3d3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Microglia_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/PU1_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/PU1_enhancers.sorted.bigBed Raw file md5 dc5e9fce9cb59fbc99df84908a6e7092 Data Category Enhancer Genomic feature type H3K27ac enhancer peaks Track Description Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx system category Nervous life stage Adult, Child trackName Nott_2019 PU.1+ Microglia Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPEL4GLYM5OX3 Download track Nott_2019 Neuron Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPEL4GLYM5OX3 Data Source Nott_2019 Download track Download Number of intervals 141,642 bp covered 130,290,144 Output type enhancer peaks Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Enhancer File format bed bed3-lifted File size 2,302,799 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz Processed file md5 9adca47b36ff7da3bfb0a78ad4d80e16 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_NeuN_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/NeuN_enhancers.sorted.bigBed Raw file md5 220511817dcfb6f010e3bfd50875a22b Data Category Enhancer Genomic feature type H3K27ac enhancer peaks Track Description Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=R system category Nervous life stage Adult, Child trackName Nott_2019 Neuron Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPEL4PJUJAKTB Download track Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPEL4PJUJAKTB Data Source Nott_2019 Download track Download Number of intervals 20,198 bp covered 32,595,591 Output type peaks Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay Histone ChIP-seq File format bed bed3-lifted File size 355,521 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz Processed file md5 f92f4fd2120e31029a90242f93fc8053 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/PU1_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/PU1_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz Raw file md5 7ff57c82eac5365d4ba73d1b36b08655 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 peaks Track Description Original_cell_type=PU1_optimal_peak_IDR_ENCODE.H3K4me3;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=4yo;sexes=M;ethnicities=His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic;acknowledgements=FILER2/Annotationtracks/hg38_lifted/Nott_2019/acknowle system category Nervous life stage Child trackName Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
NGBEPELCBNAG2EFC Download track Nott_2019 Neuron Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELCBNAG2EFC Data Source Nott_2019 Download track Download Number of intervals 1,170 bp covered 98,328,897 Output type super-enhancer peaks Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Super-enhancer File format bed bed6-lifted File size 29,680 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz Processed file md5 7e0e8eb72bfe649022b85c472cf0ff4f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_NEUN_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/NEUN_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/NEUN_superEnhancer_L1.gz Raw file md5 c9e8e569c8137b41a055488b927275ea Data Category Enhancer Genomic feature type H3K27ac super-enhancer peaks Track Description Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=R system category Nervous life stage Adult, Child trackName Nott_2019 Neuron Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
NGBEPELCYWMCR5BJ Download track Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELCYWMCR5BJ Data Source Nott_2019 Download track Download Number of intervals 48,791 bp covered 82,267,056 Output type peaks Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Histone ChIP-seq File format bed bed3-lifted File size 822,603 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz Processed file md5 dcbea562195c6dc5e6592df34e88227e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/PU1_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz Raw file md5 2eb92bd0cca0d176b2059df8a9847683 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks Track Description Original_cell_type=PU1_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual ate system category Nervous life stage Adult, Child trackName Nott_2019 PU.1+ Microglia Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPELDE7AUCBD4 Download track Nott_2019 Oligodendrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELDE7AUCBD4 Data Source Nott_2019 Download track Download Number of intervals 1,152 bp covered 76,371,866 Output type super-enhancer peaks Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Super-enhancer File format bed bed6-lifted File size 29,170 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz Processed file md5 3a9ffa8958fb78570266e2cb951eb6c3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_OLIG2_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/OLIG2_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/OLIG2_superEnhancer_L1.gz Raw file md5 6d6ef51d95473ed9c6980986c55ecf02 Data Category Enhancer Genomic feature type H3K27ac super-enhancer peaks Track Description Original_cell_type=oligodendrocytes;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;patholo system category Nervous life stage Adult, Child trackName Nott_2019 Oligodendrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
NGBEPELH4UIPYVWM Download track Nott_2019 Neuron ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELH4UIPYVWM Data Source Nott_2019 Download track Download Number of intervals 55,932 bp covered 26,306,624 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3-lifted File size 943,524 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz Processed file md5 021f5f79663b653312674edba82d0333 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/NeuN_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/NeuN_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz Raw file md5 001cd49abd5da350109e6c9eed7b8e56 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Original_cell_type=NeuN_optimal_peak_IDR_ENCODE.ATAC;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo, 8yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type IIa, Focal cortical dysplasia type Ic, Negative pathol system category Nervous life stage Child trackName Nott_2019 Neuron ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
NGBEPELI5ERYXM7L Download track Nott_2019 Neuron Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELI5ERYXM7L Data Source Nott_2019 Download track Download Number of intervals 148,066 bp covered 157,234,772 Output type peaks Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Histone ChIP-seq File format bed bed3-lifted File size 2,416,796 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz Processed file md5 2b2caaea48f1970d0509c0615c7ad141 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/NeuN_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/NeuN_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz Raw file md5 67c6c2e06a3fe6497af988d5f0a89200 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks Track Description Original_cell_type=NeuN_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual at system category Nervous life stage Adult, Child trackName Nott_2019 Neuron Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPELJZCPD6ZU6 Download track Nott_2019 Astrocyte ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELJZCPD6ZU6 Data Source Nott_2019 Download track Download Number of intervals 52,436 bp covered 21,812,881 Output type accessible chromatin region Genome build hg38 cell type Astrocyte Biosample type Tissue Biosamples term id CL:0000127 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3-lifted File size 879,849 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz Processed file md5 3114be2d4ea871dc1d150abfc9bf5cbb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/LHX2_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/LHX2_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz Raw file md5 5cc00f19995ccdb1bfd453840794abb6 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Original_cell_type=LHX2_optimal_peak_IDR_ENCODE.ATAC;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=12yo, 14yo, 4yo;sexes=M;ethnicities=Caucasian, HIs, His;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Cystic encephalomalacia , Focal cortical dysplasia type Ic, Ne system category Nervous life stage Child trackName Nott_2019 Astrocyte ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
NGBEPELKO22X6KHC Download track Nott_2019 Astrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELKO22X6KHC Data Source Nott_2019 Download track Download Number of intervals 460 bp covered 40,754,317 Output type super-enhancer peaks Genome build hg38 cell type Astrocyte Biosample type Tissue Biosamples term id CL:0000127 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Super-enhancer File format bed bed6-lifted File size 12,061 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz Processed file md5 1ceed625460a0038575b3fb312a81b7d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_LHX2_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/LHX2_superEnhancer_L1.gz Raw file md5 8e0635a999a1fee313d4e48646a9dddc Data Category Enhancer Genomic feature type H3K27ac super-enhancer peaks Track Description Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologie system category Nervous life stage Child trackName Nott_2019 Astrocyte Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Child]
NGBEPELKVRL7TVOO Download track Nott_2019 Oligodendrocyte Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELKVRL7TVOO Data Source Nott_2019 Download track Download Number of intervals 73,122 bp covered 106,184,364 Output type peaks Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Histone ChIP-seq File format bed bed3-lifted File size 1,220,856 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz Processed file md5 e02c0ff47978f0df61e6b214f0d8c075 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/Olig2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/Olig2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz Raw file md5 47dcef5d7d90621cea37887ec9b62bb8 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks Track Description Original_cell_type=Olig2_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 18yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology, Residual a system category Nervous life stage Adult, Child trackName Nott_2019 Oligodendrocyte Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPELLKCUVYQSF Download track Nott_2019 Oligodendrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELLKCUVYQSF Data Source Nott_2019 Download track Download Number of intervals 66,626 bp covered 80,769,948 Output type enhancer peaks Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Enhancer File format bed bed3-lifted File size 1,103,602 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz Processed file md5 f50a9bd858ae376d3c86439a26ea17bd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_Olig_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/Olig2_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/Olig2_enhancers.sorted.bigBed Raw file md5 b8ac27702659800eef5ae21725412556 Data Category Enhancer Genomic feature type H3K27ac enhancer peaks Track Description Original_cell_type=oligodendrocytes;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;patholo system category Nervous life stage Adult, Child trackName Nott_2019 Oligodendrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Adult, Child]
NGBEPELMB5KOIJ77 Download track Nott_2019 PU.1+ Microglia PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
Show metadata Identifier NGBEPELMB5KOIJ77 Data Source Nott_2019 Download track Download Number of intervals 209,462 bp covered 1,047,930,022 Output type chromatin interactions Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id CL:0000129 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay PLAC-seq File format bed bed4+19 interact File size 5,078,905 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Microglia_PLAC_seq_lifted.bed.gz Processed file md5 62cba4990f7f7d222c810fbfe81d1d82 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Microglia_PLAC_seq_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Microglia_PLAC_seq_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/Microglia.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed -P FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/Microglia.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed Raw file md5 1644aa6e30619631d51f3e32e3a04c45 Data Category Chromatin interactions Genomic feature type PLAC-seq H3K4me3 chromatin interactions Track Description Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;value_description=value=score/1000;ages=17yo, 5mo, 7yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Frontal Cortex, Parietal Cortex, Temporal Cortex;pathologies_dx=Anoxic ischemic encephalopathy , Cortica system category Nervous life stage Child trackName Nott_2019 PU.1+ Microglia PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
NGBEPELMCU66SP4A Download track Nott_2019 Oligodendrocyte PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
Show metadata Identifier NGBEPELMCU66SP4A Data Source Nott_2019 Download track Download Number of intervals 123,720 bp covered 619,509,026 Output type chromatin interactions Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay PLAC-seq File format bed bed4+19 interact File size 2,740,059 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Olig_PLAC_seq_lifted.bed.gz Processed file md5 3c1513aa325204df9aa3d7b62c0a13cb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Olig_PLAC_seq_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_Olig_PLAC_seq_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/Olig2.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed -P FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/Olig2.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed Raw file md5 6d3da0354f58d89182e2706ad0f8c734 Data Category Chromatin interactions Genomic feature type PLAC-seq H3K4me3 chromatin interactions Track Description Original_cell_type=oligodendrocytes;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;value_description=value=score/1000;ages=14yo, 4yo, 6yo;sexes=F, M;ethnicities=Caucasian, His, Pacific Islander;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type system category Nervous life stage Child trackName Nott_2019 Oligodendrocyte PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
NGBEPELO5LCQ5SXA Download track Nott_2019 Oligodendrocyte ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELO5LCQ5SXA Data Source Nott_2019 Download track Download Number of intervals 38,476 bp covered 21,024,569 Output type accessible chromatin region Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3-lifted File size 655,864 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz Processed file md5 6b2c4ffe6b3231aad4c075865a59f6ed wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/Olig2_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/Olig2_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz Raw file md5 67c32af1e8a65fea0af9a2c4214f9d9a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Original_cell_type=Olig2_optimal_peak_IDR_ENCODE.ATAC;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology;acknowledgements=FILER2/Annotationt system category Nervous life stage Child trackName Nott_2019 Oligodendrocyte ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
NGBEPELPRTGXPUEM Download track Nott_2019 Astrocyte Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELPRTGXPUEM Data Source Nott_2019 Download track Download Number of intervals 70,902 bp covered 92,528,824 Output type peaks Genome build hg38 cell type Astrocyte Biosample type Tissue Biosamples term id CL:0000127 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Histone ChIP-seq File format bed bed3-lifted File size 1,174,896 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz Processed file md5 16d17f95ad4755e6b660faf3576c2946 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K27_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K27/LHX2_optimal_peak_IDR_ENCODE.H3K27.sorted.bigBed.gz Raw file md5 0176dc7dea4e18131e9b56a9c475050b Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac peaks Track Description Original_cell_type=LHX2_optimal_peak_IDR_ENCODE.H3K27;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=12yo, 14yo, 4yo;sexes=M;ethnicities=Caucasian, HIs, His;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Cystic encephalomalacia , Focal cortical dysplasia type Ic, N system category Nervous life stage Child trackName Nott_2019 Astrocyte Histone ChIP-seq H3K27ac-histone-mark peaks (bed3-lifted) [Life stage: Child]
NGBEPELPW2WHHWWJ Download track Nott_2019 Neuron PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
Show metadata Identifier NGBEPELPW2WHHWWJ Data Source Nott_2019 Download track Download Number of intervals 186,454 bp covered 932,689,358 Output type chromatin interactions Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay PLAC-seq File format bed bed4+19 interact File size 4,057,893 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_NeuN_PLAC_seq_lifted.bed.gz Processed file md5 9cdbbf6226ae92fa18c32d6d04b1c19a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_NeuN_PLAC_seq_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38/formatted_output_NeuN_PLAC_seq_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/PLAC-seq/bed4plus19_interact/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/NeuN.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed -P FILER2/Annotationtracks/Downloads/Nott_2019/PLAC/NeuN.5k.2.peaks_interactions_ucsc_genome_browser.inter.bed Raw file md5 44c933050983d29d3835459ceb4de1b7 Data Category Chromatin interactions Genomic feature type PLAC-seq H3K4me3 chromatin interactions Track Description Original_cell_type=neurons;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;value_description=value=score/1000;ages=14yo, 4yo, 6yo, 8yo;sexes=F, M;ethnicities=Caucasian, His, Pacific Islander;brain_regions=Frontal Cortex, Temporal Cortex;pathologies_dx=Focal cortical dysplasia type IIa system category Nervous life stage Child trackName Nott_2019 Neuron PLAC-seq H3K4me3-histone-mark chromatin interactions (bed4+19 interact) [Life stage: Child]
NGBEPELQJ2SLIT4P Download track Nott_2019 Oligodendrocyte Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELQJ2SLIT4P Data Source Nott_2019 Download track Download Number of intervals 28,955 bp covered 36,629,556 Output type peaks Genome build hg38 cell type Oligodendrocyte Biosample type Tissue Biosamples term id CL:0000128 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay Histone ChIP-seq File format bed bed3-lifted File size 502,272 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz Processed file md5 5ae5731610e1added5813376bec1b094 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_Olig2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/Olig2_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/Olig2_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz Raw file md5 b8aef318b4f04272a76456c27c0a8a0c Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 peaks Track Description Original_cell_type=Olig2_optimal_peak_IDR_ENCODE.H3K4me3;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology;acknowledgements=FILER2/Annotati system category Nervous life stage Child trackName Nott_2019 Oligodendrocyte Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
NGBEPELTEX7FTWNU Download track Nott_2019 PU.1+ Microglia Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
Show metadata Identifier NGBEPELTEX7FTWNU Data Source Nott_2019 Download track Download Number of intervals 627 bp covered 36,383,399 Output type super-enhancer peaks Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id CL:0000129 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Super-enhancer File format bed bed6-lifted File size 16,103 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz Processed file md5 b092169eb4fb0766f1ebd6df526a7726 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38/formatted_output_PU1_superEnhancer_L1_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Super-enhancer/bed6-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/Super_enhancers/PU1_superEnhancer_L1.gz Raw file md5 b7f0d422ddeea5e5a8b5df151d9f4e21 Data Category Enhancer Genomic feature type H3K27ac super-enhancer peaks Track Description Original_cell_type=microglia;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 4yo, 18yo;sexes=M;ethnicities=His, Caucasian;brain_regions=Parietal Cortex, Temporal Cortex;pathologies_dx system category Nervous life stage Adult, Child trackName Nott_2019 PU.1+ Microglia Super-enhancer H3K27ac-histone-mark super-enhancer peaks (bed6-lifted) [Life stage: Adult, Child]
NGBEPELUAKDKDCNE Download track Nott_2019 Astrocyte Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELUAKDKDCNE Data Source Nott_2019 Download track Download Number of intervals 19,254 bp covered 24,973,448 Output type peaks Genome build hg38 cell type Astrocyte Biosample type Tissue Biosamples term id CL:0000127 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay Histone ChIP-seq File format bed bed3-lifted File size 337,937 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz Processed file md5 72fcc04c69b24db1f1ccc0e5133334d5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_LHX2_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/LHX2_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/LHX2_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz Raw file md5 79032d90285ecdf5b80ae979b50f42cb Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 peaks Track Description Original_cell_type=LHX2_optimal_peak_IDR_ENCODE.H3K4me3;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology;acknowledgements=FILER2/Annotatio system category Nervous life stage Child trackName Nott_2019 Astrocyte Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
NGBEPELVGBAZPWVJ Download track Nott_2019 PU.1+ Microglia ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELVGBAZPWVJ Data Source Nott_2019 Download track Download Number of intervals 50,199 bp covered 26,339,987 Output type accessible chromatin region Genome build hg38 cell type PU.1+ Microglia Biosample type Tissue Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3-lifted File size 841,467 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz Processed file md5 9fc7767d501a938f90c44caa25a2d68f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38/formatted_output_PU1_optimal_peak_IDR_ENCODE.ATAC_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/ATAC-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/PU1_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/ATAC/PU1_optimal_peak_IDR_ENCODE.ATAC.sorted.bigBed.gz Raw file md5 3a37870a7e3568ebd976057707371bd2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Original_cell_type=PU1_optimal_peak_IDR_ENCODE.ATAC;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology;acknowledgements=FILER2/Annotationtra system category Nervous life stage Child trackName Nott_2019 PU.1+ Microglia ATAC-seq accessible chromatin region (bed3-lifted) [Life stage: Child]
NGBEPELWEAN5LXGD Download track Nott_2019 Neuron Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELWEAN5LXGD Data Source Nott_2019 Download track Download Number of intervals 22,831 bp covered 40,610,754 Output type peaks Genome build hg38 cell type Neuron Biosample type Tissue Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K4me3 Assay Histone ChIP-seq File format bed bed3-lifted File size 401,152 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz Processed file md5 7d490b946f0865fa4bbefb8232c4fd42 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38/formatted_output_NeuN_optimal_peak_IDR_ENCODE.H3K4me3_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Histone_ChIP-seq/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/NeuN_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz -P FILER2/Annotationtracks/Downloads/Nott_2019/H3K4me3/NeuN_optimal_peak_IDR_ENCODE.H3K4me3.sorted.bigBed.gz Raw file md5 858fe9f67a9f3f194c2083785f0434fa Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 peaks Track Description Original_cell_type=NeuN_optimal_peak_IDR_ENCODE.H3K4me3;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;ages=14yo, 4yo;sexes=M;ethnicities=Caucasian, His;brain_regions=Temporal Cortex;pathologies_dx=Focal cortical dysplasia type Ic, Negative pathology;acknowledgements=FILER2/Annotatio system category Nervous life stage Child trackName Nott_2019 Neuron Histone ChIP-seq H3K4me3-histone-mark peaks (bed3-lifted) [Life stage: Child]
NGBEPELXRUBJ5PEB Download track Nott_2019 Astrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Child]
Show metadata Identifier NGBEPELXRUBJ5PEB Data Source Nott_2019 Download track Download Number of intervals 63,793 bp covered 68,540,614 Output type enhancer peaks Genome build hg38 cell type Astrocyte Biosample type Tissue Biosamples term id CL:0000127 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody H3K27ac Assay Enhancer File format bed bed3-lifted File size 1,048,902 Downloaded date 10/02/2020 Release date 02/04/2020 Date added to FILER 12/03/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz Processed file md5 eecea1fad502c7be39819a055c0937af wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38/formatted_output_LHX2_enhancers_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nott_2019/Enhancer/bed3-lifted/hg38 Link out URL http://homer.ucsd.edu/iholtman/Nuclei_project/interaction/MAPS/ Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed -P FILER2/Annotationtracks/Downloads/Nott_2019/enhancers/LHX2_enhancers.sorted.bigBed Raw file md5 33f70e542485065ce46412039fef9f69 Data Category Enhancer Genomic feature type H3K27ac enhancer peaks Track Description Original_cell_type=astrocyte;doi=https://doi.org/10.1126/science.aay0793;pubmed_id=31727856;notes=Active enhancers were identified by H3K27ac peaks that were outside of H3K4me3 peaks;ages=14yo, 12yo, 4yo;sexes=M;ethnicities=HIs, His, Caucasian;brain_regions=Temporal Cortex, Frontal Cortex;pathologie system category Nervous life stage Child trackName Nott_2019 Astrocyte Enhancer H3K27ac-histone-mark enhancer peaks (bed3-lifted) [Life stage: Child]
NGBLP22HOI5MVP Download track Blueprint Dendritic cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP22HOI5MVP Data Source Blueprint Download track Download Number of intervals 85,254 bp covered 46,570,949 Output type peaks Genome build hg38 cell type Dendritic cell Biosample type Primary cell Biosamples term id CL:0000841 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K27ac Assay ChIP-seq File format bed bed6 File size 1,115,354 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz Processed file md5 7cb9299b13f028cc93d44bffaa1cb682 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/58488.Blueprint.ERS1044647.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 a9bc8cd13ed826ec2d3851fefd41aa8e Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks Track Description Original_cell_type=Mature conventional dendritic cell;ID=ERS1044647;disease=Healthy;donor_id=B270;donor_age=45-50;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0000841;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/ system category Cardiovascular life stage Adult trackName Blueprint Dendritic cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP22U5BMHOA Download track Blueprint Peripheral mononucleated cells ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP22U5BMHOA Data Source Blueprint Download track Download Number of intervals 123,478 bp covered 65,239,996 Output type peaks Genome build hg38 cell type Peripheral mononucleated cells Biosample type Primary cell Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K27ac Assay ChIP-seq File format bed bed6 File size 1,547,826 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz Processed file md5 b50e559d5c211877e529c6552f1d98e9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/62573.Blueprint.ERS699840.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 a5f1f835713b4b0fb3b5b9adba20a663 Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks Track Description Original_cell_type=Peripheral blood mononuclear cell;ID=ERS699840;disease=Acute Myeloid Leukemia;donor_id=UMCG00025;donor_age=20-25;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_2000001;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf system category Cardiovascular life stage Adult trackName Blueprint Peripheral mononucleated cells ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP232QO44J6 Download track Blueprint CD14+CD16- monocyte ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Child]
Show metadata Identifier NGBLP232QO44J6 Data Source Blueprint Download track Download Number of intervals 38,217 bp covered 31,723,352 Output type peaks Genome build hg38 cell type CD14+CD16- monocyte Biosample type Primary cell Biosamples term id CL:0002057 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K9me3 Assay ChIP-seq File format bed bed6 File size 486,117 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59930.Blueprint.ERS206567.H3K9me3.peak_calls.bed.gz Processed file md5 b410df80ab41636fe33e7538988c63de wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59930.Blueprint.ERS206567.H3K9me3.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59930.Blueprint.ERS206567.H3K9me3.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/59930.Blueprint.ERS206567.H3K9me3.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/59930.Blueprint.ERS206567.H3K9me3.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 989bedb8e423afec6d8c5d881bdcda76 Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K9me3 peaks Track Description Original_cell_type=CD14-positive, CD16-negative classical monocyte;ID=ERS206567;disease=Healthy;donor_id=C005PS;donor_age=0-5;donor_sex=Female;sample_ontology=http://purl.obolibrary.org/obo/CL_0002057;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lis system category Cardiovascular life stage Child trackName Blueprint CD14+CD16- monocyte ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Child]
NGBLP236EJGLEG Download track Blueprint CD8+ alpha-beta T cell ChIP-seq H3K4me1-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP236EJGLEG Data Source Blueprint Download track Download Number of intervals 58,055 bp covered 155,108,747 Output type peaks Genome build hg38 cell type CD8+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0001062 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K4me1 Assay ChIP-seq File format bed bed6 File size 726,602 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/60925.Blueprint.ERS257250.H3K4me1.peak_calls.bed.gz Processed file md5 ea04a4656c31da1952fe1cb250c6296d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/60925.Blueprint.ERS257250.H3K4me1.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/60925.Blueprint.ERS257250.H3K4me1.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/60925.Blueprint.ERS257250.H3K4me1.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/60925.Blueprint.ERS257250.H3K4me1.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 011efb81d16679c0885945de5cec232c Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me1 peaks Track Description Original_cell_type=Effector memory CD8-positive, alpha-beta T cell, terminally differentiated;ID=ERS257250;disease=Healthy;donor_id=S004JD;donor_age=60-65;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0001062;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_ack system category Cardiovascular life stage Adult trackName Blueprint CD8+ alpha-beta T cell ChIP-seq H3K4me1-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP23ICFIDUF Download track Blueprint Lymph node ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP23ICFIDUF Data Source Blueprint Download track Download Number of intervals 42,551 bp covered 37,433,043 Output type peaks Genome build hg38 cell type Lymph node Biosample type Primary tissue Biosamples term id UBERON:0000029 Tissue category Immune Organ ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K27ac Assay ChIP-seq File format bed bed6 File size 570,977 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz Processed file md5 eee4a8ab2beab7e986cb723bcac70e43 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/57480.Blueprint.ERS886070.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 d2e034b4b9f4efec54d16b626d5d0c9c Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks Track Description Original_cell_type=Lymph node;ID=ERS886070;disease=Lymphoma_Follicular;donor_id=FL Grad 1_2_1;donor_age=70-75;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/UBERON_0000029;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/ system category Lymphatic life stage Adult trackName Blueprint Lymph node ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP254FDWDS5 Download track Blueprint Dendritic cell ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP254FDWDS5 Data Source Blueprint Download track Download Number of intervals 5,744 bp covered 6,644,143 Output type peaks Genome build hg38 cell type Dendritic cell Biosample type Primary cell Biosamples term id CL:0000841 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K9me3 Assay ChIP-seq File format bed bed6 File size 78,063 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58646.Blueprint.ERS1044677.H3K9me3.peak_calls.bed.gz Processed file md5 52d32a6ffe1d5243042f5fbd0594ff40 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58646.Blueprint.ERS1044677.H3K9me3.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/58646.Blueprint.ERS1044677.H3K9me3.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/58646.Blueprint.ERS1044677.H3K9me3.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/58646.Blueprint.ERS1044677.H3K9me3.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 0d0aeae56e2158d9ed6c505ab5ae361a Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K9me3 peaks Track Description Original_cell_type=Mature conventional dendritic cell;ID=ERS1044677;disease=Healthy;donor_id=B272;donor_age=35-40;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0000841;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/ system category Cardiovascular life stage Adult trackName Blueprint Dendritic cell ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP25JEJ3JN4 Download track Blueprint Neutrophil ChIP-seq H3K4me3-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP25JEJ3JN4 Data Source Blueprint Download track Download Number of intervals 30,373 bp covered 36,018,203 Output type peaks Genome build hg38 cell type Neutrophil Biosample type Primary cell Biosamples term id CL:0000096 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K4me3 Assay ChIP-seq File format bed bed6 File size 373,418 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62354.Blueprint.ERS462587.H3K4me3.peak_calls.bed.gz Processed file md5 7f3e4eb034f6f6b3474aae95d8b09634 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62354.Blueprint.ERS462587.H3K4me3.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62354.Blueprint.ERS462587.H3K4me3.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/62354.Blueprint.ERS462587.H3K4me3.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/62354.Blueprint.ERS462587.H3K4me3.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 b1cca84c9a1bca2023db4a0d51b7a9eb Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me3 peaks Track Description Original_cell_type=Mature neutrophil;ID=ERS462587;disease=Healthy;donor_id=PB130513;donor_age=30-35;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0000096;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/GADB/FILER2/ac system category Cardiovascular life stage Adult trackName Blueprint Neutrophil ChIP-seq H3K4me3-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP26FRQIHHG Download track Blueprint Neutrophil ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP26FRQIHHG Data Source Blueprint Download track Download Number of intervals 84,165 bp covered 118,042,589 Output type peaks Genome build hg38 cell type Neutrophil Biosample type Primary cell Biosamples term id CL:0011114 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K9me3 Assay ChIP-seq File format bed bed6 File size 1,045,750 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/61870.Blueprint.ERS462585.H3K9me3.peak_calls.bed.gz Processed file md5 7fac55ef092fc1f31261a2b2d3132143 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/61870.Blueprint.ERS462585.H3K9me3.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/61870.Blueprint.ERS462585.H3K9me3.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/61870.Blueprint.ERS462585.H3K9me3.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/61870.Blueprint.ERS462585.H3K9me3.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 9bff0223acbb615589d6d9ffc38cbbb6 Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K9me3 peaks Track Description Original_cell_type=Segmented neutrophil of bone marrow;ID=ERS462585;disease=Healthy;donor_id=BM220513;donor_age=65-70;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0011114;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab. system category Skeletal life stage Adult trackName Blueprint Neutrophil ChIP-seq H3K9me3-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP275JJNHVW Download track Blueprint Lymph node ChIP-seq H3K4me3-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP275JJNHVW Data Source Blueprint Download track Download Number of intervals 25,436 bp covered 30,998,952 Output type peaks Genome build hg38 cell type Lymph node Biosample type Primary tissue Biosamples term id UBERON:0000029 Tissue category Immune Organ ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K4me3 Assay ChIP-seq File format bed bed6 File size 363,709 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57519.Blueprint.ERS886071.H3K4me3.peak_calls.bed.gz Processed file md5 3a3d202e549cfba3451e116532347c15 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57519.Blueprint.ERS886071.H3K4me3.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/57519.Blueprint.ERS886071.H3K4me3.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/57519.Blueprint.ERS886071.H3K4me3.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/57519.Blueprint.ERS886071.H3K4me3.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 19a8dc67f9844442eb251f6d6fc69cbb Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K4me3 peaks Track Description Original_cell_type=Lymph node;ID=ERS886071;disease=Lymphoma_Follicular;donor_id=FL Grad 1_2_2;donor_age=40-45;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/UBERON_0000029;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/ system category Lymphatic life stage Adult trackName Blueprint Lymph node ChIP-seq H3K4me3-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP27NIRXMUY Download track Blueprint Myeloid cell WGB-Seq peaks (bed4) [Life stage: Adult]
Show metadata Identifier NGBLP27NIRXMUY Data Source Blueprint Download track Download Number of intervals 537,598 bp covered 2,077,167,668 Output type peaks Genome build hg38 cell type Myeloid cell Biosample type Primary cell Biosamples term id CL:0000763 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay WGB-Seq File format bed bed4 File size 6,321,733 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/WGB-Seq/bed4/hg38/62425.Blueprint.ERS699848.WGB-Seq.peak_calls.bed.gz Processed file md5 38d4891a9e96b2cc5a40401cd9e641d2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/WGB-Seq/bed4/hg38/62425.Blueprint.ERS699848.WGB-Seq.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/WGB-Seq/bed4/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/WGB-Seq/bed4/hg38/62425.Blueprint.ERS699848.WGB-Seq.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/WGB-Seq/bed4/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/62425.Blueprint.ERS699848.WGB-Seq.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/62425.Blueprint.ERS699848.WGB-Seq.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 fe85477ed6364a3d944c8e1c47c0c420 Data Category Methylation Genomic feature type WGB-Seq peaks Track Description Original_cell_type=Myeloid cell;ID=ERS699848;disease=Acute Myeloid Leukemia;donor_id=UMCG00003;donor_age=20-25;donor_sex=Female;sample_ontology=http://purl.obolibrary.org/obo/CL_2000001;schema=BED4;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/G system category Cardiovascular life stage Adult trackName Blueprint Myeloid cell WGB-Seq peaks (bed4) [Life stage: Adult]
NGBLP27RNLAK5B Download track Blueprint Myeloid cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP27RNLAK5B Data Source Blueprint Download track Download Number of intervals 146,475 bp covered 119,391,385 Output type peaks Genome build hg38 cell type Myeloid cell Biosample type Primary cell Biosamples term id CL:0000763 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K27ac Assay ChIP-seq File format bed bed6 File size 1,872,243 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz Processed file md5 1c4d9edafa05250d270f82c95dde8871 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/62097.Blueprint.ERS655114.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 e9c588d8aad3a19c03d8ba6e0eaffc43 Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks Track Description Original_cell_type=Myeloid cell;ID=ERS655114;disease=Acute Myeloid Leukemia;donor_id=pz 298;donor_age=75-80;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0000763;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Adult trackName Blueprint Myeloid cell ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
NGBLP2AWLV25GB Download track Blueprint Monocyte ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]
Show metadata Identifier NGBLP2AWLV25GB Data Source Blueprint Download track Download Number of intervals 78,531 bp covered 45,787,331 Output type peaks Genome build hg38 cell type Monocyte Biosample type Primary cell Biosamples term id CL:0000576 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody H3K27ac Assay ChIP-seq File format bed bed6 File size 1,033,137 Downloaded date 03/12/2021 Release date 08/31/2016 Date added to FILER 04/10/2021 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz Processed file md5 02fa449b2a92c2fd91bcb83e2d29d9ce wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bed.gz.tbi -P FILER2/Annotationtracks/IHEC/IHEC_Blueprint/ChIP-seq/bed6/hg38/ Link out URL https://ihec-epigenomes.org/ Raw File URL https://epigenomesportal.ca/tracks/Blueprint/hg38/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/IHEC/Blueprint/59143.Blueprint.ERS1044029.H3K27ac.peak_calls.bigBed -P FILER2/Annotationtracks/Downloads/IHEC/Blueprint/ Raw file md5 e1f35f5e57645217365bb02be21132e1 Data Category Histone ChIP-seq peaks Genomic feature type ChIP-seq H3K27ac peaks Track Description Original_cell_type=Monocyte;ID=ERS1044029;disease=Healthy;donor_id=SANQUIN_mono_61;donor_age=50-55;donor_sex=Male;sample_ontology=http://purl.obolibrary.org/obo/CL_0000576;schema=BED6;dataSource_pubmed_id=27863956;in_trackHub=yes;dataSource_acknowledgements=http://tf.lisanwanglab.org/GADB/FILER2/ack system category Cardiovascular life stage Adult trackName Blueprint Monocyte ChIP-seq H3K27ac-histone-mark peaks (bed6) [Life stage: Adult]