NGADBYXVRYDG57 Download track ATACdb_v1.03 Ishikawa ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYXVRYDG57 Data Source ATACdb_v1.03 Download track Download Number of intervals 2,376 bp covered 683,594 Output type accessible chromatin region Genome build hg38 cell type Ishikawa Biosample type Cell line Biosamples term id EFO:0005718 Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 71,901 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0670_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d6489872220ef825b7dc3808c276f821 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0670_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0670_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0670.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0670.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 039b25e9d5a26c88ee02471c343a322b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0670;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Ishikawa;Cancer_Type=Endometrial cancer;Region_Number=2390;Length=686.466 kb;GEO_SRA=SRR6653444;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Reproductive life stage Unknown trackName ATACdb_v1.03 Ishikawa ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBYY6LN6PES Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYY6LN6PES Data Source ATACdb_v1.03 Download track Download Number of intervals 135,941 bp covered 1,830,624 Output type transcription factor binding sites Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,349,386 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1433_hg38_motif_binding_sites.bed.gz Processed file md5 5513958220916ba3e95404125c7bf43a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1433_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1433_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1433;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=25013;Length=14743.432 kb;GEO_SRA=SRR5785394;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBYY7UYGR6H Download track ATACdb_v1.03 Primary visual cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYY7UYGR6H Data Source ATACdb_v1.03 Download track Download Number of intervals 25,566 bp covered 11,015,569 Output type accessible chromatin region Genome build hg38 cell type Primary visual cortex Biosample type Not applicable Biosamples term id UBERON:0002436 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 787,942 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0485_accessible_chromatin_regions_hg38.bed.gz Processed file md5 0c38b453fdfe4cf6513765ca5d91316f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0485_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0485_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0485.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0485.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 6f5c17b9baac624b28d88baf70d7d42b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0485;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=25578;Length=11021.295 kb;GEO_SRA=SRR5367752;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary visual cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBYYFLDLBI6 Download track ATACdb_v1.03 CD56bright natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYYFLDLBI6 Data Source ATACdb_v1.03 Download track Download Number of intervals 147,555 bp covered 2,023,393 Output type transcription factor binding sites Genome build hg38 cell type CD56bright natural killer cell Biosample type Primary cell Biosamples term id CL:0000938 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,209,693 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0028_hg38_motif_binding_sites.bed.gz Processed file md5 f90835c66664d4d16ef44e2869eec7bd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0028_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0028_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0028;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD56Bright natural killer cell;Cancer_Type=Normal;Region_Number=46698;Length=22925.65 kb;GEO_SRA=SRR6955604;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD56bright natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBYYGKQVZBF Download track ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYYGKQVZBF Data Source ATACdb_v1.03 Download track Download Number of intervals 352,450 bp covered 4,830,497 Output type transcription factor binding sites Genome build hg38 cell type HCASMC Biosample type Tissue Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 12,883,379 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1159_hg38_motif_binding_sites.bed.gz Processed file md5 a4a3826e196083eef0e46bf709bcb608 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1159_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1159_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1159;Biosample_Type=Tissue;Tissue_Type=Artery;Biosample_Name=HCASMC;Cancer_Type=Coronary artery disease;Region_Number=113833;Length=77971.343 kb;GEO_SRA=SRR2378583;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBYYP3BYYKR Download track ATACdb_v1.03 Glioblastoma ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYYP3BYYKR Data Source ATACdb_v1.03 Download track Download Number of intervals 53,392 bp covered 36,553,069 Output type accessible chromatin region Genome build hg38 cell type Glioblastoma Biosample type Stem cell Biosamples term id NCIT:C3058 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,791,312 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0138_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2e88b2f2396a395eef36dc4435a94113 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0138_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0138_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0138.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0138.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5a5bfd8f4dd2d7daa8eea519444cd231 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0138;Biosample_Type=Stem Cell;Tissue_Type=Brain;Biosample_Name=Glioblastoma stem cell;Cancer_Type=Glioblastoma;Region_Number=53462;Length=36610.886 kb;GEO_SRA=SRR7642282;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Glioblastoma ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBYYXIRE33P Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYYXIRE33P Data Source ATACdb_v1.03 Download track Download Number of intervals 4,450 bp covered 1,542,586 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 141,097 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1298_accessible_chromatin_regions_hg38.bed.gz Processed file md5 8907f57dd4f1e9497ac3591ac19a3cd3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1298_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1298_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1298.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1298.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b2ce5d13c3ea6f6c83ebb89218da5a8f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1298;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=4481;Length=1558.689 kb;GEO_SRA=SRR1556377;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBYZLFUVYLQ Download track ATACdb_v1.03 HeLa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBYZLFUVYLQ Data Source ATACdb_v1.03 Download track Download Number of intervals 50,410 bp covered 673,361 Output type transcription factor binding sites Genome build hg38 cell type HeLa Biosample type Cell line Biosamples term id EFO:0001185 Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,596,575 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0158_hg38_motif_binding_sites.bed.gz Processed file md5 dbf43d77c7c2ffcf97c91fe4d0c523e1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0158_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0158_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0158;Biosample_Type=Cell Line;Tissue_Type=Cervix;Biosample_Name=HeLa;Cancer_Type=Cervix adenocarcinoma;Region_Number=15123;Length=4190.127 kb;GEO_SRA=SRR8102128;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 HeLa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ24FLUL7N Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZ24FLUL7N Data Source ATACdb_v1.03 Download track Download Number of intervals 111,741 bp covered 1,485,321 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,597,690 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1392_hg38_motif_binding_sites.bed.gz Processed file md5 f16e21fc23db134dbdd7e6a700adc595 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1392_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1392_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1392;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=28850;Length=13573.155 kb;GEO_SRA=SRR6930063;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBZ2AMOGEFZ Download track ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ2AMOGEFZ Data Source ATACdb_v1.03 Download track Download Number of intervals 13,899 bp covered 7,490,738 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 458,725 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0089_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d79e6654481780dd313d0febd41d25cd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0089_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0089_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0089.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0089.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ea7b2a375c7b479b3f2ddafd6610815d Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0089;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=13930;Length=7509.812 kb;GEO_SRA=SRR5417053;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ2DASQXJS Download track ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ2DASQXJS Data Source ATACdb_v1.03 Download track Download Number of intervals 78,776 bp covered 1,063,136 Output type transcription factor binding sites Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,681,387 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0128_hg38_motif_binding_sites.bed.gz Processed file md5 ee64a3281f5f004967b4d762f96679bb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0128_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0128_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0128;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=18445;Length=11712.442 kb;GEO_SRA=SRR6870514;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ2N6F77SX Download track ATACdb_v1.03 Follicular T helper ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ2N6F77SX Data Source ATACdb_v1.03 Download track Download Number of intervals 49,171 bp covered 21,886,021 Output type accessible chromatin region Genome build hg38 cell type Follicular T helper Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,637,051 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0217_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ed75131473e50b7d473c707b48627e73 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0217_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0217_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0217.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0217.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 51c9ec020639e6be2b4f5fa6e6cf76de Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0217;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Follicular_T_Helper;Cancer_Type=Normal;Region_Number=49293;Length=21963.367 kb;GEO_SRA=SRR7650747;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Follicular T helper ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ2PAGMZ3Q Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ2PAGMZ3Q Data Source ATACdb_v1.03 Download track Download Number of intervals 251,066 bp covered 3,359,166 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id EFO:0009320 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,027,114 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0739_hg38_motif_binding_sites.bed.gz Processed file md5 c9afbdafedde4dba19e96ededcc01137 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0739_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0739_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0739;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=RUES2;Cancer_Type=Normal;Region_Number=61234;Length=28396.674 kb;GEO_SRA=SRR6269273;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Unknown trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ34ZNJCU7 Download track ATACdb_v1.03 Primary visual cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ34ZNJCU7 Data Source ATACdb_v1.03 Download track Download Number of intervals 20,572 bp covered 7,670,111 Output type accessible chromatin region Genome build hg38 cell type Primary visual cortex Biosample type Not applicable Biosamples term id UBERON:0002436 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 636,502 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0513_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a0b7f6d0328fe815af60a2e1ac4c8dd4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0513_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0513_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0513.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0513.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7722a535c2b2ab89a43d52e41d7eb4df Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0513;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=20579;Length=7674.064 kb;GEO_SRA=SRR5367796;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary visual cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ3E55XC5T Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ3E55XC5T Data Source ATACdb_v1.03 Download track Download Number of intervals 89,226 bp covered 1,223,605 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,397,060 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0771_hg38_motif_binding_sites.bed.gz Processed file md5 7635fd2a6e628dd603625ea9be1e6181 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0771_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0771_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0771;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18870;Cancer_Type=Other;Region_Number=44910;Length=20942.091 kb;GEO_SRA=SRR6412488;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ3Z4F3BK4 Download track ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ3Z4F3BK4 Data Source ATACdb_v1.03 Download track Download Number of intervals 96,810 bp covered 1,321,704 Output type transcription factor binding sites Genome build hg38 cell type Nucleus accumbens Biosample type Not applicable Biosamples term id UBERON:0001882 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,676,329 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0482_hg38_motif_binding_sites.bed.gz Processed file md5 9d6154bbc4a477fec97473542c5e60aa wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0482_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0482_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0482;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Other;Region_Number=60630;Length=21824.392 kb;GEO_SRA=SRR5367749;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ47CI2KE4 Download track ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ47CI2KE4 Data Source ATACdb_v1.03 Download track Download Number of intervals 14,775 bp covered 4,887,053 Output type accessible chromatin region Genome build hg38 cell type CD8+ T cell Biosample type Cell line Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 479,436 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0846_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2be44420b38434d28ee422003a9d122b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0846_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0846_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0846.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0846.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 dd7feeca52208450c49b4984721e43d2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0846;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=T_T;Cancer_Type=The Yellow fever;Region_Number=14812;Length=4897.529 kb;GEO_SRA=SRR5839498;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ4DVAMRZF Download track ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ4DVAMRZF Data Source ATACdb_v1.03 Download track Download Number of intervals 120,281 bp covered 1,629,396 Output type transcription factor binding sites Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,061,869 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1308_hg38_motif_binding_sites.bed.gz Processed file md5 2502afcd4fd59f3ee78f6af1448114e3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1308_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1308_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1308;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=26770;Length=16576.77 kb;GEO_SRA=SRR1822168;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZ52FS5YZD Download track ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ52FS5YZD Data Source ATACdb_v1.03 Download track Download Number of intervals 144,217 bp covered 71,898,129 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 4,630,284 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0373_accessible_chromatin_regions_hg38.bed.gz Processed file md5 16e82e5de4136c03f6c3141077222e4b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0373_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0373_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0373.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0373.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 27211a09acdf85e3390076515f5c8cab Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0373;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=Fibroblast;Cancer_Type=Other;Region_Number=144365;Length=72012.75 kb;GEO_SRA=SRR5521292;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ5HLOSWY4 Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZ5HLOSWY4 Data Source ATACdb_v1.03 Download track Download Number of intervals 126,596 bp covered 1,693,701 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,311,689 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1406_hg38_motif_binding_sites.bed.gz Processed file md5 ec73d2c564b65d5c5e9cd474781cd4e9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1406_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1406_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1406;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=41058;Length=17673.828 kb;GEO_SRA=SRR8098484;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBZ6BWSBYAE Download track ATACdb_v1.03 Hematopoietic stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ6BWSBYAE Data Source ATACdb_v1.03 Download track Download Number of intervals 16,592 bp covered 8,960,218 Output type accessible chromatin region Genome build hg38 cell type Hematopoietic stem cell Biosample type Primary cell Biosamples term id CL:0000037 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 557,121 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1183_accessible_chromatin_regions_hg38.bed.gz Processed file md5 180e6cff059f7b8aba7aa05c60f21234 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1183_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1183_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1183.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1183.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f555b970a84b25416dcdb3d0a01846a7 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1183;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=EB-HSPC;Cancer_Type=Normal;Region_Number=16627;Length=8971.326 kb;GEO_SRA=SRR3095974;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Hematopoietic stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ77SC2DVB Download track ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ77SC2DVB Data Source ATACdb_v1.03 Download track Download Number of intervals 43,373 bp covered 18,440,609 Output type accessible chromatin region Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,402,365 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0671_accessible_chromatin_regions_hg38.bed.gz Processed file md5 60237c300e5cf1048547546be512c0b5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0671_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0671_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0671.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0671.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 953871433724141b53a46da011b9a1fe Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0671;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=43426;Length=18458.629 kb;GEO_SRA=SRR5856835;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ7JEMIVGJ Download track ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ7JEMIVGJ Data Source ATACdb_v1.03 Download track Download Number of intervals 82,082 bp covered 62,170,582 Output type accessible chromatin region Genome build hg38 cell type Jurkat Biosample type Cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,661,492 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0893_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d11947d236479d0948970d93a4ce4a31 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0893_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0893_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0893.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0893.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 9407506790401bcd82884145b467617f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0893;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=82176;Length=62201.858 kb;GEO_SRA=SRR5063995;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ7L4RBNRG Download track ATACdb_v1.03 Neutrophil ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ7L4RBNRG Data Source ATACdb_v1.03 Download track Download Number of intervals 1,285 bp covered 697,203 Output type accessible chromatin region Genome build hg38 cell type Neutrophil Biosample type Primary cell Biosamples term id CL:0000775 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 40,197 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1134_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7808747a9b4ddac3c5fb3e323a54b8e7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1134_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1134_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1134.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1134.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 33b5d8996b6f3405b8f9c506390f5b5c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1134;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=neutrophil;Cancer_Type=Normal;Region_Number=1303;Length=695.248 kb;GEO_SRA=SRR2999332;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Neutrophil ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZ7R5HOEHL Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZ7R5HOEHL Data Source ATACdb_v1.03 Download track Download Number of intervals 23,385 bp covered 17,006,198 Output type accessible chromatin region Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 799,684 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1428_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c082d9813d32d5ca1e607f0c068286be wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1428_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1428_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1428.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1428.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 6f1ac8728073ee67424b8b14833de572 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1428;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=23436;Length=14585.432 kb;GEO_SRA=SRR5785386;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZA7OSMUQ3 Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZA7OSMUQ3 Data Source ATACdb_v1.03 Download track Download Number of intervals 180,526 bp covered 2,501,934 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Stem cell Biosamples term id NCIT:C28147 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,633,879 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0604_hg38_motif_binding_sites.bed.gz Processed file md5 caa0e4bf0ed903ba2c85b0ed3b21c721 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0604_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0604_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0604;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=31347;Length=20878.005 kb;GEO_SRA=GSM2706228;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBZAHWK2NGT Download track ATACdb_v1.03 Thalamus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZAHWK2NGT Data Source ATACdb_v1.03 Download track Download Number of intervals 69,937 bp covered 29,964,484 Output type accessible chromatin region Genome build hg38 cell type Thalamus Biosample type Not applicable Biosamples term id NCIT:C12459 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,223,863 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0534_accessible_chromatin_regions_hg38.bed.gz Processed file md5 fc6bda2215c2c7ace26a97c3e52d3da2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0534_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0534_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0534.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0534.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7eca79898a1f6347eea815a60ed65ce8 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0534;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=mediodorsal thalamus;Cancer_Type=Other;Region_Number=69944;Length=29944.887 kb;GEO_SRA=SRR5367818;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Thalamus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZAN4SHVIV Download track ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZAN4SHVIV Data Source ATACdb_v1.03 Download track Download Number of intervals 146,405 bp covered 1,959,768 Output type transcription factor binding sites Genome build hg38 cell type Natural killer cell Biosample type Not applicable Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,533,557 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0354_hg38_motif_binding_sites.bed.gz Processed file md5 a88231c35194402add43936939a48554 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0354_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0354_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0354;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Immature_NK;Cancer_Type=Normal;Region_Number=23921;Length=16585.454 kb;GEO_SRA=SRR7650910;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZAV3QDEAW Download track ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZAV3QDEAW Data Source ATACdb_v1.03 Download track Download Number of intervals 26,648 bp covered 11,990,955 Output type accessible chromatin region Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 880,002 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1464_accessible_chromatin_regions_hg38.bed.gz Processed file md5 18a0659cc1f23520d4c4597a08fdf1e7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1464_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1464_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1464.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1464.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 37c97ed7887c293709708cc6c9a8e377 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1464;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=B cell;Cancer_Type=Hypogammaglobulinemia;Region_Number=26705;Length=12010.347 kb;GEO_SRA=SRR5970488;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZB2QTSLRL Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZB2QTSLRL Data Source ATACdb_v1.03 Download track Download Number of intervals 14,752 bp covered 7,370,923 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 496,233 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1265_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a31ec626519697a64cd3bc4bfb8dedd1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1265_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1265_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1265.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1265.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 79a04f3a9f411975f95133db09c2aacf Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1265;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=14775;Length=7379.334 kb;GEO_SRA=SRR1556344;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZBT365Y3Z Download track ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZBT365Y3Z Data Source ATACdb_v1.03 Download track Download Number of intervals 20,574 bp covered 9,765,599 Output type accessible chromatin region Genome build hg38 cell type Macrophage Biosample type Primary cell Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 685,454 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1026_accessible_chromatin_regions_hg38.bed.gz Processed file md5 df247681565d0b2f65e90f8ff45447fb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1026_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1026_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1026.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1026.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 be13a87cf9b30501b8bd00cb0ca07eba Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1026;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=Macrophage;Cancer_Type=Normal;Region_Number=20618;Length=9779.056 kb;GEO_SRA=SRR4450161;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZBVA4O32Q Download track ATACdb_v1.03 GM12878 and Patski mouse cell line ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZBVA4O32Q Data Source ATACdb_v1.03 Download track Download Number of intervals 4,747 bp covered 1,818,145 Output type accessible chromatin region Genome build hg38 cell type GM12878 and Patski mouse cell line Biosample type Cell line Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 137,578 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1300_accessible_chromatin_regions_hg38.bed.gz Processed file md5 30f8a4c629d4371ecfa1640e0c1126ed wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1300_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1300_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1300.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1300.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b4937694b0db1c1d4716b0893c3d8637 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1300;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Mixture of GM12878 and Patski mouse embryonic kidney fibroblast cell line;Cancer_Type=Normal;Region_Number=4759;Length=1824.254 kb;GEO_SRA=SRR1947691;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSourc system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 and Patski mouse cell line ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZCIBJ72QS Download track ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZCIBJ72QS Data Source ATACdb_v1.03 Download track Download Number of intervals 75,059 bp covered 42,365,546 Output type accessible chromatin region Genome build hg38 cell type FL3 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,424,519 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1152_accessible_chromatin_regions_hg38.bed.gz Processed file md5 bdef9fdd7a858cbd9a0c0fef535bf3b5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1152_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1152_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1152.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1152.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b3e4275f3db817c4f8f4460ae4c800b0 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1152;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=75141;Length=42441.228 kb;GEO_SRA=SRR3066453;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZCQSUIMP4 Download track ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZCQSUIMP4 Data Source ATACdb_v1.03 Download track Download Number of intervals 30,833 bp covered 20,453,094 Output type accessible chromatin region Genome build hg38 cell type CD8+ T cell Biosample type Primary cell Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,033,783 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1017_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c8a25e3556e915c5701184a2c570b490 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1017_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1017_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1017.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1017.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 95f7edcf5e1e490294afd1d54789bb49 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1017;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD8 T cell;Cancer_Type=Normal;Region_Number=30886;Length=20486.896 kb;GEO_SRA=SRR4568585;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZD5HMPXXY Download track ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZD5HMPXXY Data Source ATACdb_v1.03 Download track Download Number of intervals 224,570 bp covered 3,089,926 Output type transcription factor binding sites Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,229,255 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0962_hg38_motif_binding_sites.bed.gz Processed file md5 40ea14257c5f5a6fc20b0f9017d7e9c4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0962_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0962_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0962;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=MCF7;Cancer_Type=Breast cancer;Region_Number=71281;Length=39183.856 kb;GEO_SRA=SRR5857007;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZDFPDUZXD Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZDFPDUZXD Data Source ATACdb_v1.03 Download track Download Number of intervals 6,408 bp covered 2,153,015 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 202,966 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1280_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9e350014b6c5f5fff344242b9639cf05 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1280_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1280_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1280.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1280.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 6bc03cb6209d5a7631fb45c176356e4e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1280;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Leukemia;Region_Number=6431;Length=2157.422 kb;GEO_SRA=SRR1556359;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZDGRBVR7Y Download track ATACdb_v1.03 iMeLCs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZDGRBVR7Y Data Source ATACdb_v1.03 Download track Download Number of intervals 24,714 bp covered 13,586,922 Output type accessible chromatin region Genome build hg38 cell type iMeLCs Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 795,615 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0009_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a17be370059685890270dea9f2241bb9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0009_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0009_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0009.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0009.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 56df314c455db85ebc8be3a7c2b11392 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0009;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=iMeLCs induced from primed UCLA2 hESCs;Cancer_Type=Normal;Region_Number=24774;Length=13602.714 kb;GEO_SRA=SRR7942730;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.li system category Embryo life stage Embryonic trackName ATACdb_v1.03 iMeLCs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBZDJ7MOGGZ Download track ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZDJ7MOGGZ Data Source ATACdb_v1.03 Download track Download Number of intervals 36,469 bp covered 19,249,314 Output type accessible chromatin region Genome build hg38 cell type Chronic lymphocytic leukemia Biosample type Cell line Biosamples term id NCIT:C3163 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,206,379 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0094_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9de4b643668a9ef9370be948c8f375a3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0094_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0094_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0094.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0094.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8e496ba40a1006dd670eccd0572ee435 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0094;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CLL;Cancer_Type=Leukemia;Region_Number=36524;Length=19270.203 kb;GEO_SRA=SRR7815324;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZE52JFRXJ Download track ATACdb_v1.03 V6.5 mESCs cultured in 2i+LIF conditions ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBZE52JFRXJ Data Source ATACdb_v1.03 Download track Download Number of intervals 2,173 bp covered 689,936 Output type accessible chromatin region Genome build hg38 cell type V6.5 mESCs cultured in 2i+LIF conditions Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 62,893 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0642_accessible_chromatin_regions_hg38.bed.gz Processed file md5 019151b0d3e7ca72106debbb7985d2de wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0642_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0642_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0642.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0642.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 c07ee2e31b1a58533d62a9fb2badc8a9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0642;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=V6.5 mESCs cultured in 2i+LIF conditions;Cancer_Type=Normal;Region_Number=2178;Length=691.747 kb;GEO_SRA=SRR5815118;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lis system category Embryo life stage Embryonic trackName ATACdb_v1.03 V6.5 mESCs cultured in 2i+LIF conditions ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBZEK3WTXVV Download track ATACdb_v1.03 Frontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZEK3WTXVV Data Source ATACdb_v1.03 Download track Download Number of intervals 13,416 bp covered 4,610,668 Output type accessible chromatin region Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 431,455 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1340_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c8214bc856335c78475bd251a459af74 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1340_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1340_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1340.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1340.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 cd418d9f120d82b51ad202d8ec6e90c4 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1340;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=13454;Length=4619.869 kb;GEO_SRA=SRR8571963;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZEWG7XG72 Download track ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZEWG7XG72 Data Source ATACdb_v1.03 Download track Download Number of intervals 18,584 bp covered 7,420,753 Output type accessible chromatin region Genome build hg38 cell type CD8+ T cell Biosample type Cell line Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 611,028 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0841_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9f8a1aa8ecef7ddecf0475e774d8fe45 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0841_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0841_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0841.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0841.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ca25d598efcd4e8c2b1861ab5a28795d Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0841;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=T_T;Cancer_Type=The Yellow fever;Region_Number=18620;Length=7434.648 kb;GEO_SRA=SRR5839493;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZFAAO7U7J Download track ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFAAO7U7J Data Source ATACdb_v1.03 Download track Download Number of intervals 8,617 bp covered 3,427,061 Output type accessible chromatin region Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 268,484 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0836_accessible_chromatin_regions_hg38.bed.gz Processed file md5 755d4c7ab2798c5dbe29f79f6a4ac3c9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0836_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0836_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0836.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0836.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 aae24a97e8ad360505556bf59a833bb5 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0836;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=8638;Length=3436.72 kb;GEO_SRA=SRR5839488;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZFBFFSO2R Download track ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFBFFSO2R Data Source ATACdb_v1.03 Download track Download Number of intervals 9,233 bp covered 3,108,588 Output type accessible chromatin region Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 286,113 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0835_accessible_chromatin_regions_hg38.bed.gz Processed file md5 1c4affee4969189ed9d49e7c679adc65 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0835_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0835_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0835.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0835.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 3fab9424b68a78bd53bfad3936e7f596 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0835;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=9265;Length=3120.412 kb;GEO_SRA=SRR5839487;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZFDJ3WJOW Download track ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFDJ3WJOW Data Source ATACdb_v1.03 Download track Download Number of intervals 81,010 bp covered 36,200,790 Output type accessible chromatin region Genome build hg38 cell type hIPS Biosample type Stem cell Biosamples term id Not available Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,617,503 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0119_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a5fd990c0ae565cb28bb1c8abec54637 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0119_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0119_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0119.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0119.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 3ea061cee26cdf8168a6deb588218ecc Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0119;Biosample_Type=Stem Cell;Tissue_Type=Adipose;Biosample_Name=ASCs;Cancer_Type=Normal;Region_Number=81066;Length=36231.452 kb;GEO_SRA=SRR6181360;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZFEESG3WR Download track ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFEESG3WR Data Source ATACdb_v1.03 Download track Download Number of intervals 11,913 bp covered 6,030,956 Output type accessible chromatin region Genome build hg38 cell type B cell Biosample type Not applicable Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 397,235 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1491_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f3c38a5d16469a876191afdcef7bb0eb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1491_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1491_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1491.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1491.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0551bf4445ebe2c6877db4af0654a28c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1491;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=B cell;Cancer_Type=Systemic Lupus Erythematosus;Region_Number=11932;Length=6002.441 kb;GEO_SRA=SRR3158181;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZFQYW55OW Download track ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFQYW55OW Data Source ATACdb_v1.03 Download track Download Number of intervals 233,806 bp covered 3,189,756 Output type transcription factor binding sites Genome build hg38 cell type B cell Biosample type Not applicable Biosamples term id CL:0000236 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,862,669 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0242_hg38_motif_binding_sites.bed.gz Processed file md5 cee6498fd82233dcfaebffbedbffbd26 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0242_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0242_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0242;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Bulk_B;Cancer_Type=Normal;Region_Number=51385;Length=31505.79 kb;GEO_SRA=SRR7650772;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZFZR2XDQC Download track ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZFZR2XDQC Data Source ATACdb_v1.03 Download track Download Number of intervals 52,242 bp covered 701,662 Output type transcription factor binding sites Genome build hg38 cell type Primary visual cortex Biosample type Not applicable Biosamples term id UBERON:0002436 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,831,277 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0538_hg38_motif_binding_sites.bed.gz Processed file md5 a790634378b2381043cfd54a17e53d16 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0538_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0538_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0538;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=20979;Length=7517.152 kb;GEO_SRA=SRR5367822;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBZG2CM45JA Download track ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZG2CM45JA Data Source ATACdb_v1.03 Download track Download Number of intervals 58,235 bp covered 35,194,041 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,933,116 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1482_accessible_chromatin_regions_hg38.bed.gz Processed file md5 838ace6d73f6755ecd2c0043b74937fd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1482_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1482_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1482.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1482.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5b0d0a32a7e230a50b4dde08a82d8226 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1482;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=CEC;Cancer_Type=Other;Region_Number=58281;Length=35229.221 kb;GEO_SRA=SRR1982097;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZGB4U3WRS Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZGB4U3WRS Data Source ATACdb_v1.03 Download track Download Number of intervals 1,074 bp covered 772,698 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 35,835 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0793_accessible_chromatin_regions_hg38.bed.gz Processed file md5 73d24be2958fda1f6ebcad67285c104f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0793_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0793_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0793.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0793.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 859075d5e66795e0f1cd771bd9b3382e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0793;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19138;Cancer_Type=Other;Region_Number=1109;Length=784.947 kb;GEO_SRA=SRR6412428;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBZGKVLKYN4 Download track ATACdb_v1.03 U-CH2 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBZGKVLKYN4 Data Source ATACdb_v1.03 Download track Download Number of intervals 37,162 bp covered 15,713,387 Output type accessible chromatin region Genome build hg38 cell type U-CH2 Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,207,338 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1450_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2deb3ba87861997e766039b0bf4cd2e1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1450_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1450_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1450.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1450.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b765641cc0f7011128a09adbb87cf739 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1450;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U-CH2;Cancer_Type=Chordoma;Region_Number=37202;Length=15734.804 kb;GEO_SRA=SRR6635721;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Skeletal life stage Unknown trackName ATACdb_v1.03 U-CH2 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]