NGADBVNYKV5FQ5 Download track ATACdb_v1.03 hTERT-HPNE ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVNYKV5FQ5 Data Source ATACdb_v1.03 Download track Download Number of intervals 72,105 bp covered 29,042,286 Output type accessible chromatin region Genome build hg38 cell type hTERT-HPNE Biosample type Cell line Biosamples term id NCIT:C25726 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,317,580 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0894_accessible_chromatin_regions_hg38.bed.gz Processed file md5 568ba935a1b9c0c9159df97350f65baf wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0894_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0894_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0894.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0894.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0a861eed792e2510ad9b38775738a925 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0894;Biosample_Type=Cell Line;Tissue_Type=Pancreas;Biosample_Name=Pancreatic;Cancer_Type=Pancreatic cancer;Region_Number=72203;Length=29097.441 kb;GEO_SRA=SRR5376214;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Digestive life stage Unknown trackName ATACdb_v1.03 hTERT-HPNE ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVOIQEFAZ6 Download track ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVOIQEFAZ6 Data Source ATACdb_v1.03 Download track Download Number of intervals 6,958 bp covered 2,738,648 Output type accessible chromatin region Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 214,517 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0825_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7840db368d50a71a484af34ef76aeeb9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0825_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0825_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0825.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0825.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 d030da37f94f5715b069b2ed653f333a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0825;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=6980;Length=2748.89 kb;GEO_SRA=SRR5839477;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVP7DQUL2H Download track ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVP7DQUL2H Data Source ATACdb_v1.03 Download track Download Number of intervals 27,099 bp covered 357,479 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 848,087 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1244_hg38_motif_binding_sites.bed.gz Processed file md5 b1e9f2b63fbad73f236e0da4867cc51c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1244_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1244_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1244;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=6303;Length=2071.477 kb;GEO_SRA=SRR1556323;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVPD67JU7V Download track ATACdb_v1.03 ILC1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVPD67JU7V Data Source ATACdb_v1.03 Download track Download Number of intervals 19,983 bp covered 14,855,027 Output type accessible chromatin region Genome build hg38 cell type ILC1 Biosample type Primary cell Biosamples term id CL:0001068 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 688,570 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1186_accessible_chromatin_regions_hg38.bed.gz Processed file md5 4547d9d93ee16ae1df72965759eb1646 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1186_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1186_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1186.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1186.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f4a5c3e6cec094dbe2e86c321fcbf39c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1186;Biosample_Type=Primary Cell;Tissue_Type=Tonsil;Biosample_Name=ILC;Cancer_Type=Normal;Region_Number=20027;Length=14851.071 kb;GEO_SRA=SRR3129113;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Lymphatic life stage Unknown trackName ATACdb_v1.03 ILC1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVQ3MWGLK4 Download track ATACdb_v1.03 CD4+ effector memory T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVQ3MWGLK4 Data Source ATACdb_v1.03 Download track Download Number of intervals 30,321 bp covered 16,795,678 Output type accessible chromatin region Genome build hg38 cell type CD4+ effector memory T cell Biosample type Not applicable Biosamples term id CL:0000905 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,030,714 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0331_accessible_chromatin_regions_hg38.bed.gz Processed file md5 bbe1687995e61b0e2011f30b0de37d7f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0331_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0331_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0331.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0331.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 daad713f73323c9e37a439927f5cf33b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0331;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Effector_CD4pos_T;Cancer_Type=Normal;Region_Number=30408;Length=16850.197 kb;GEO_SRA=SRR7650863;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ effector memory T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVQ5QQAZAD Download track ATACdb_v1.03 T-helper 1 cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVQ5QQAZAD Data Source ATACdb_v1.03 Download track Download Number of intervals 25,731 bp covered 14,555,546 Output type accessible chromatin region Genome build hg38 cell type T-helper 1 cell Biosample type Not applicable Biosamples term id CL:0000545 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 875,909 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0344_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9498436c971054d295bf9687f7855d84 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0344_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0344_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0344.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0344.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 30b4b31777e7ec20c6151724bc4255a4 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0344;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Th1;Cancer_Type=Normal;Region_Number=25819;Length=14615.684 kb;GEO_SRA=SRR7650876;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgeme system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 1 cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVQ6DV4MTP Download track ATACdb_v1.03 Ishikawa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVQ6DV4MTP Data Source ATACdb_v1.03 Download track Download Number of intervals 71,072 bp covered 954,806 Output type transcription factor binding sites Genome build hg38 cell type Ishikawa Biosample type Cell line Biosamples term id EFO:0005718 Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,323,702 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0669_hg38_motif_binding_sites.bed.gz Processed file md5 5fd6ae28514dc43f69439ed036fdc71b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0669_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0669_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0669;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Ishikawa;Cancer_Type=Endometrial cancer;Region_Number=19192;Length=6309.465 kb;GEO_SRA=SRR6653443;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 Ishikawa ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVQWOCZI44 Download track ATACdb_v1.03 HCT116 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVQWOCZI44 Data Source ATACdb_v1.03 Download track Download Number of intervals 31,995 bp covered 14,458,492 Output type accessible chromatin region Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,058,440 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0881_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6556932ef400090c3385cafc78153e0f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0881_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0881_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0881.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0881.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ae30438bbf0b241a34212e4e99fde557 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0881;Biosample_Type=Cell Line;Tissue_Type=Colon;Biosample_Name=HCT116;Cancer_Type=Colorectal carcinoma;Region_Number=32063;Length=14506.114 kb;GEO_SRA=SRR5876164;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Digestive life stage Unknown trackName ATACdb_v1.03 HCT116 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVRMPMBFCC Download track ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVRMPMBFCC Data Source ATACdb_v1.03 Download track Download Number of intervals 41,537 bp covered 14,780,936 Output type accessible chromatin region Genome build hg38 cell type HAEC Biosample type Cell line Biosamples term id EFO:0022506 Tissue category Heart ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,345,203 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1009_accessible_chromatin_regions_hg38.bed.gz Processed file md5 8c973b248a6bfbe7679cfacb89ad24a5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1009_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1009_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1009.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1009.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 38b14814b8db2cf97344290ec006dae4 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1009;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=JHU-06;Cancer_Type=Other;Region_Number=41615;Length=14787.832 kb;GEO_SRA=SRR5029210;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVRUT6ERDA Download track ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVRUT6ERDA Data Source ATACdb_v1.03 Download track Download Number of intervals 32,812 bp covered 441,291 Output type transcription factor binding sites Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,117,656 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1340_hg38_motif_binding_sites.bed.gz Processed file md5 f97aa318fe54a5b09d9cb293e59776bc wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1340_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1340_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1340;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=13454;Length=4619.869 kb;GEO_SRA=SRR8571963;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVRVMF5R3Y Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVRVMF5R3Y Data Source ATACdb_v1.03 Download track Download Number of intervals 120,569 bp covered 1,625,267 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,780,197 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0816_hg38_motif_binding_sites.bed.gz Processed file md5 eaeeff5fe0651be8dd5f69c48bc9436c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0816_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0816_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0816;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18508;Cancer_Type=Other;Region_Number=26305;Length=14836.906 kb;GEO_SRA=SRR6412459;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVRVQZ4I7L Download track ATACdb_v1.03 Skin ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVRVQZ4I7L Data Source ATACdb_v1.03 Download track Download Number of intervals 78,138 bp covered 30,905,839 Output type accessible chromatin region Genome build hg38 cell type Skin Biosample type Not applicable Biosamples term id NCIT:C12470 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,477,600 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1379_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f1121d7df0d5cd1c731968a9555aea34 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1379_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1379_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1379.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1379.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e23b43d114f9e1b448f961f56a785648 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1379;Biosample_Type=Other;Tissue_Type=Skin;Biosample_Name=Skin;Cancer_Type=Normal;Region_Number=78256;Length=30998.108 kb;GEO_SRA=SRR8558127;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgeme system category Integumentary life stage Unknown trackName ATACdb_v1.03 Skin ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVSOZSTPOI Download track ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVSOZSTPOI Data Source ATACdb_v1.03 Download track Download Number of intervals 13,188 bp covered 4,682,466 Output type accessible chromatin region Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 415,866 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0930_accessible_chromatin_regions_hg38.bed.gz Processed file md5 3cf813cd3a205ae9a470ada82f54d5c4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0930_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0930_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0930.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0930.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7e4941ccf28edce4b9897a0b1fed0738 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0930;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=13219;Length=4694.586 kb;GEO_SRA=SRR5809237;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVSVKSLJKD Download track ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVSVKSLJKD Data Source ATACdb_v1.03 Download track Download Number of intervals 1,295 bp covered 20,503 Output type transcription factor binding sites Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 28,371 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0545_hg38_motif_binding_sites.bed.gz Processed file md5 30cdcc5736815628edb95bb8f77b987b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0545_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0545_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0545;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=MCF7;Cancer_Type=Breast cancer;Region_Number=353;Length=82.598 kb;GEO_SRA=SRR6372039;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Reproductive life stage Unknown trackName ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVTFKNUIMK Download track ATACdb_v1.03 Follicular T helper ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVTFKNUIMK Data Source ATACdb_v1.03 Download track Download Number of intervals 22,562 bp covered 15,711,269 Output type accessible chromatin region Genome build hg38 cell type Follicular T helper Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 766,401 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0360_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2ad2552a737b21f9ac135ac17e4415f4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0360_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0360_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0360.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0360.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 955d97b32d537a0935e9baebf930d608 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0360;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Follicular_T_Helper;Cancer_Type=Normal;Region_Number=22639;Length=15757.457 kb;GEO_SRA=SRR7650919;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Follicular T helper ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVTG6IU6G7 Download track ATACdb_v1.03 Jurkat ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVTG6IU6G7 Data Source ATACdb_v1.03 Download track Download Number of intervals 275,003 bp covered 3,806,225 Output type transcription factor binding sites Genome build hg38 cell type Jurkat Biosample type Cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 9,858,152 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0892_hg38_motif_binding_sites.bed.gz Processed file md5 5a180dad7f7869bb77ad6e765e28abb1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0892_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0892_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0892;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=74938;Length=50243.356 kb;GEO_SRA=SRR5063994;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Jurkat ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVTJS7L7HS Download track ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVTJS7L7HS Data Source ATACdb_v1.03 Download track Download Number of intervals 207,512 bp covered 2,806,670 Output type transcription factor binding sites Genome build hg38 cell type HCASMC Biosample type Tissue Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,966,415 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1325_hg38_motif_binding_sites.bed.gz Processed file md5 cd6719211229fa925b203cfbec64e263 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1325_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1325_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1325;Biosample_Type=Tissue;Tissue_Type=Blood;Biosample_Name=HCASMC;Cancer_Type=Coronary artery disease;Region_Number=43672;Length=30732.801 kb;GEO_SRA=SRR8216258;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVTJTLOH3N Download track ATACdb_v1.03 CCRF-CEM ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVTJTLOH3N Data Source ATACdb_v1.03 Download track Download Number of intervals 16,930 bp covered 9,113,070 Output type accessible chromatin region Genome build hg38 cell type CCRF-CEM Biosample type Cell line Biosamples term id NCIT:C117114 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 567,887 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0729_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c85b52b5ed52d506be701f70665896ac wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0729_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0729_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0729.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0729.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 2e349eea0db30d4d7c8f4feeb72e57bb Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0729;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CCRF-CEM;Cancer_Type=Cultured cancer;Region_Number=16977;Length=9124.517 kb;GEO_SRA=SRR5831758;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CCRF-CEM ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVTL5DJOYZ Download track ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVTL5DJOYZ Data Source ATACdb_v1.03 Download track Download Number of intervals 46,473 bp covered 22,145,089 Output type accessible chromatin region Genome build hg38 cell type U2OS Biosample type Cell line Biosamples term id EFO:0002869 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,508,700 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0598_accessible_chromatin_regions_hg38.bed.gz Processed file md5 787356ce45a7d87c66584eb184c57ad5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0598_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0598_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0598.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0598.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8a37a5c43d746365a52b98a5c87c8a9f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0598;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=46581;Length=22228.5 kb;GEO_SRA=GSM2946878;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Skeletal life stage Unknown trackName ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVU6PMPLIP Download track ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVU6PMPLIP Data Source ATACdb_v1.03 Download track Download Number of intervals 150,201 bp covered 2,016,953 Output type transcription factor binding sites Genome build hg38 cell type Natural killer cell Biosample type Not applicable Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,789,379 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0351_hg38_motif_binding_sites.bed.gz Processed file md5 8828391c14085dbd5336e1048ed0aff6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0351_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0351_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0351;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Mature_NK;Cancer_Type=Normal;Region_Number=29267;Length=16861.358 kb;GEO_SRA=SRR7650883;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVUN6UQI2O Download track ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVUN6UQI2O Data Source ATACdb_v1.03 Download track Download Number of intervals 70,644 bp covered 940,117 Output type transcription factor binding sites Genome build hg38 cell type Natural killer cell Biosample type Primary cell Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,279,502 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0704_hg38_motif_binding_sites.bed.gz Processed file md5 53a19cb269be95a0011603a8eb512a89 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0704_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0704_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0704;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=Natural Killer cell;Cancer_Type=Normal;Region_Number=17335;Length=6360.919 kb;GEO_SRA=SRR5006006;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Natural killer cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVVIJBZKBG Download track ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVVIJBZKBG Data Source ATACdb_v1.03 Download track Download Number of intervals 33,727 bp covered 25,331,649 Output type accessible chromatin region Genome build hg38 cell type B cell Biosample type Not applicable Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,137,929 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1489_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e2387c9f6dc0799c1ea57f015d75cd17 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1489_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1489_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1489.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1489.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 c5d46373e1da1d3c8c57f2d95b992ba1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1489;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=B cell;Cancer_Type=Systemic Lupus Erythematosus;Region_Number=33777;Length=22915.059 kb;GEO_SRA=SRR3158183;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVVRSUMPTA Download track ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVVRSUMPTA Data Source ATACdb_v1.03 Download track Download Number of intervals 105,020 bp covered 1,385,324 Output type transcription factor binding sites Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,143,707 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0082_hg38_motif_binding_sites.bed.gz Processed file md5 20ff1f02400e73410f8bd0e0c7e68bd5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0082_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0082_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0082;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=15281;Length=9054.955 kb;GEO_SRA=SRR5417046;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVVUED7E3C Download track ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVVUED7E3C Data Source ATACdb_v1.03 Download track Download Number of intervals 14,877 bp covered 5,569,680 Output type accessible chromatin region Genome build hg38 cell type Macrophage Biosample type Primary cell Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 472,345 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1025_accessible_chromatin_regions_hg38.bed.gz Processed file md5 369e26add9aeed78eb1e1ae7c97aa820 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1025_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1025_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1025.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1025.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1ba57bb68f66556b9f89b5e74d8cbcde Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1025;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=Macrophage;Cancer_Type=Normal;Region_Number=14930;Length=5587.141 kb;GEO_SRA=SRR4450160;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVWDVURQ44 Download track ATACdb_v1.03 Monocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVWDVURQ44 Data Source ATACdb_v1.03 Download track Download Number of intervals 27,164 bp covered 15,609,763 Output type accessible chromatin region Genome build hg38 cell type Monocyte Biosample type Not applicable Biosamples term id CL:0000576 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 919,716 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0363_accessible_chromatin_regions_hg38.bed.gz Processed file md5 62a113dc9f883eb2e92a554734fd1d4b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0363_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0363_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0363.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0363.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 fbee141cf470c666c3617ec4ae65054f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0363;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Monocytes;Cancer_Type=Normal;Region_Number=27239;Length=15650.776 kb;GEO_SRA=SRR7650923;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Monocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVWLUIOQRG Download track ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVWLUIOQRG Data Source ATACdb_v1.03 Download track Download Number of intervals 180,275 bp covered 2,438,006 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,935,692 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0042_hg38_motif_binding_sites.bed.gz Processed file md5 81df26ef7b07cf58d4579c5083822b6d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0042_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0042_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0042;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=45805;Length=26958.365 kb;GEO_SRA=SRR5343859;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVWWHBO5PJ Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVWWHBO5PJ Data Source ATACdb_v1.03 Download track Download Number of intervals 141,254 bp covered 1,917,214 Output type transcription factor binding sites Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,609,399 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1421_hg38_motif_binding_sites.bed.gz Processed file md5 5115ba3c37fa01f3671f8791425fd03f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1421_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1421_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1421;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=25686;Length=16240.089 kb;GEO_SRA=SRR5785375;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVX4HGDUTG Download track ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVX4HGDUTG Data Source ATACdb_v1.03 Download track Download Number of intervals 51,651 bp covered 23,821,241 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id EFO:0009320 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,610,155 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0741_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e3dea07a69b4d831ff6bbdac9e85c99e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0741_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0741_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0741.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0741.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e3031594dec5406f23c2e3e2e7a4b8cc Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0741;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=RUES2;Cancer_Type=Normal;Region_Number=51761;Length=23869.947 kb;GEO_SRA=SRR6269275;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Unknown trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVXAUM4OP4 Download track ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVXAUM4OP4 Data Source ATACdb_v1.03 Download track Download Number of intervals 24,745 bp covered 14,111,657 Output type accessible chromatin region Genome build hg38 cell type Memory Tregs Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 847,093 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0336_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ff9d621a6f2698800a395dc1dbe1ec2d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0336_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0336_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0336.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0336.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f4f8452e4c1406331eb2d851b54bcb32 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0336;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=24820;Length=14159.049 kb;GEO_SRA=SRR7650868;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVXNGWCUUJ Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVXNGWCUUJ Data Source ATACdb_v1.03 Download track Download Number of intervals 21,976 bp covered 12,633,819 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 760,057 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1251_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ab9b8c3b57310e06ae39822fe3c2ab8f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1251_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1251_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1251.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1251.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8636c79189d25b06b8fcef46550e4af3 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1251;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=22013;Length=12638.438 kb;GEO_SRA=SRR1556330;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVXYVTT6FO Download track ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBVXYVTT6FO Data Source ATACdb_v1.03 Download track Download Number of intervals 164,942 bp covered 2,193,071 Output type transcription factor binding sites Genome build hg38 cell type UCLA1 hESCs Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,110,370 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0631_hg38_motif_binding_sites.bed.gz Processed file md5 59a818f257ed447faa13729c9412f3b9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0631_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0631_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0631;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Primed SSEA4+ UCLA1 hESCs;Cancer_Type=Normal;Region_Number=30793;Length=15745.592 kb;GEO_SRA=SRR5815106;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system category Embryo life stage Embryonic trackName ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBVYUVZILDK Download track ATACdb_v1.03 Naive B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVYUVZILDK Data Source ATACdb_v1.03 Download track Download Number of intervals 51,059 bp covered 27,948,630 Output type accessible chromatin region Genome build hg38 cell type Naive B cell Biosample type Not applicable Biosamples term id CL:0000788 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,697,779 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0246_accessible_chromatin_regions_hg38.bed.gz Processed file md5 100787e59fe3b19cbeb923700dea44cd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0246_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0246_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0246.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0246.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ebbe445f4447a6929d13a5722fe8f4c9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0246;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_B;Cancer_Type=Normal;Region_Number=51169;Length=27996.824 kb;GEO_SRA=SRR7650776;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Naive B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVZAZGHTZM Download track ATACdb_v1.03 CM CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVZAZGHTZM Data Source ATACdb_v1.03 Download track Download Number of intervals 211,308 bp covered 2,869,010 Output type transcription factor binding sites Genome build hg38 cell type CM CD8+ T cell Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,035,302 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0208_hg38_motif_binding_sites.bed.gz Processed file md5 32ad2cc1b0b6246cd039c28305d1478f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0208_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0208_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0208;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Central_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=49046;Length=27006.17 kb;GEO_SRA=SRR7650738;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CM CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVZBLZFHE2 Download track ATACdb_v1.03 AT-hMSC-TERT ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVZBLZFHE2 Data Source ATACdb_v1.03 Download track Download Number of intervals 96,602 bp covered 1,339,721 Output type transcription factor binding sites Genome build hg38 cell type AT-hMSC-TERT Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,195,564 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0092_hg38_motif_binding_sites.bed.gz Processed file md5 82795ca08b8ab49e31555f42ad7d477d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0092_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0092_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0092;Biosample_Type=Cell Line;Tissue_Type=Adipose;Biosample_Name=AT-hMSC-TERT;Cancer_Type=Normal;Region_Number=32694;Length=10027.309 kb;GEO_SRA=SRR7939686;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Skeletal life stage Unknown trackName ATACdb_v1.03 AT-hMSC-TERT ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBVZCXRY4RW Download track ATACdb_v1.03 CD19+ B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVZCXRY4RW Data Source ATACdb_v1.03 Download track Download Number of intervals 38,633 bp covered 32,071,642 Output type accessible chromatin region Genome build hg38 cell type CD19+ B cell Biosample type Primary cell Biosamples term id CL:0001201 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,311,897 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1174_accessible_chromatin_regions_hg38.bed.gz Processed file md5 84c032ad5d7b0832aa7bfb7b9bcdeb02 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1174_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1174_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1174.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1174.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a7767ccdc11ad96afe77b14b06f0944e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1174;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD19+ B cell;Cancer_Type=Normal;Region_Number=38690;Length=29658.226 kb;GEO_SRA=SRR2126771;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD19+ B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBVZQXLIRNF Download track ATACdb_v1.03 CD8+ naive T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBVZQXLIRNF Data Source ATACdb_v1.03 Download track Download Number of intervals 154,950 bp covered 2,088,102 Output type transcription factor binding sites Genome build hg38 cell type CD8+ naive T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,966,831 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0328_hg38_motif_binding_sites.bed.gz Processed file md5 ddbb68b782068066613eaa98c098c42b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0328_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0328_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0328;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_CD8_T;Cancer_Type=Normal;Region_Number=35188;Length=17399.928 kb;GEO_SRA=SRR7650860;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ naive T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW26CWIDMN Download track ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW26CWIDMN Data Source ATACdb_v1.03 Download track Download Number of intervals 44,416 bp covered 597,094 Output type transcription factor binding sites Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,568,385 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1478_hg38_motif_binding_sites.bed.gz Processed file md5 57ee3bfcd089897a05a0893be90e9763 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1478_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1478_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1478;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=CEC;Cancer_Type=Other;Region_Number=16379;Length=6843.594 kb;GEO_SRA=SRR1982093;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledg system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW2B6OVRPY Download track ATACdb_v1.03 Inferior temporal lobe ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW2B6OVRPY Data Source ATACdb_v1.03 Download track Download Number of intervals 91,156 bp covered 1,218,991 Output type transcription factor binding sites Genome build hg38 cell type Inferior temporal lobe Biosample type Not applicable Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,040,545 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0520_hg38_motif_binding_sites.bed.gz Processed file md5 a5f9b5887fb62d21a4d2ec82d57877f6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0520_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0520_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0520;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=inferior temporal cortex;Cancer_Type=Other;Region_Number=25756;Length=10849.748 kb;GEO_SRA=SRR5367804;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Inferior temporal lobe ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW2BYHSZHU Download track ATACdb_v1.03 HAEC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW2BYHSZHU Data Source ATACdb_v1.03 Download track Download Number of intervals 121,549 bp covered 1,625,097 Output type transcription factor binding sites Genome build hg38 cell type HAEC Biosample type Cell line Biosamples term id EFO:0022506 Tissue category Heart ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,992,464 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1003_hg38_motif_binding_sites.bed.gz Processed file md5 19255584c4545f90d029edfd4afa513e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1003_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1003_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1003;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=JHU-06;Cancer_Type=Other;Region_Number=32734;Length=11580.958 kb;GEO_SRA=SRR5029204;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAEC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW2FBQ4N5B Download track ATACdb_v1.03 SK-MEL-147 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW2FBQ4N5B Data Source ATACdb_v1.03 Download track Download Number of intervals 145,939 bp covered 1,991,039 Output type transcription factor binding sites Genome build hg38 cell type SK-MEL-147 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,309,056 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0856_hg38_motif_binding_sites.bed.gz Processed file md5 7f5f185b517e9e4de35762621c7540ce wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0856_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0856_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0856;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=SKmel147;Cancer_Type=Melanoma;Region_Number=54259;Length=26445.16 kb;GEO_SRA=SRR5228488;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Integumentary life stage Unknown trackName ATACdb_v1.03 SK-MEL-147 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW2VEGHBL7 Download track ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW2VEGHBL7 Data Source ATACdb_v1.03 Download track Download Number of intervals 15,747 bp covered 209,931 Output type transcription factor binding sites Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 494,059 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1331_hg38_motif_binding_sites.bed.gz Processed file md5 3b8b3b1a1e3f4296cad8c2400ddd3662 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1331_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1331_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1331;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=4390;Length=1363.573 kb;GEO_SRA=SRR8571954;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW3HIUUZCV Download track ATACdb_v1.03 CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW3HIUUZCV Data Source ATACdb_v1.03 Download track Download Number of intervals 101,791 bp covered 1,359,757 Output type transcription factor binding sites Genome build hg38 cell type CD8+ T cell Biosample type Primary cell Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,336,678 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1371_hg38_motif_binding_sites.bed.gz Processed file md5 34771752fd2c4c31048a3348652ee813 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1371_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1371_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1371;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD8+ T cell;Cancer_Type=Normal;Region_Number=29265;Length=9259.425 kb;GEO_SRA=SRR6730130;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW3NTXC2NJ Download track ATACdb_v1.03 iMeLCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBW3NTXC2NJ Data Source ATACdb_v1.03 Download track Download Number of intervals 156,714 bp covered 2,081,912 Output type transcription factor binding sites Genome build hg38 cell type iMeLCs Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,931,100 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0007_hg38_motif_binding_sites.bed.gz Processed file md5 26d7a74fe2d62451c94a155589997522 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0007_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0007_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0007;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=iMeLCs induced from primed UCLA1 hESCs;Cancer_Type=Normal;Region_Number=31268;Length=17829.782 kb;GEO_SRA=SRR7942728;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.li system category Embryo life stage Embryonic trackName ATACdb_v1.03 iMeLCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBW3WYB4IS4 Download track ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW3WYB4IS4 Data Source ATACdb_v1.03 Download track Download Number of intervals 13,527 bp covered 5,774,360 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 442,068 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1279_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6510ce41027f1cdc4459eb03ee8487f0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1279_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1279_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1279.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1279.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b729c8caad3d827474e687166ed078ff Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1279;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Leukemia;Region_Number=13573;Length=5788.799 kb;GEO_SRA=SRR1556358;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBW47IPOAVP Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW47IPOAVP Data Source ATACdb_v1.03 Download track Download Number of intervals 160,850 bp covered 2,169,963 Output type transcription factor binding sites Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,196,403 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1430_hg38_motif_binding_sites.bed.gz Processed file md5 d7e4f73d4c2a7a3c5f9bb7a9525efdb1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1430_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1430_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1430;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=27181;Length=19250.005 kb;GEO_SRA=SRR5785389;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW4IM4TI2M Download track ATACdb_v1.03 MCF-7 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW4IM4TI2M Data Source ATACdb_v1.03 Download track Download Number of intervals 233 bp covered 53,744 Output type accessible chromatin region Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 6,403 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0549_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c1dc1f43f3ca71e1f91aee8cd53ff98a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0549_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0549_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0549.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0549.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 bc203fbcf983a40b27e5ddef992abd45 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0549;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=MCF7;Cancer_Type=Breast cancer;Region_Number=235;Length=54.226 kb;GEO_SRA=SRR6372045;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Reproductive life stage Unknown trackName ATACdb_v1.03 MCF-7 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBW4QQK2CYP Download track ATACdb_v1.03 HAEC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW4QQK2CYP Data Source ATACdb_v1.03 Download track Download Number of intervals 136,551 bp covered 1,823,064 Output type transcription factor binding sites Genome build hg38 cell type HAEC Biosample type Not applicable Biosamples term id EFO:0022506 Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,451,609 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0114_hg38_motif_binding_sites.bed.gz Processed file md5 7f6e3f90ca398e9707ed19f0fd774801 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0114_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0114_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0114;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=HAEC;Cancer_Type=Coronary artery disease;Region_Number=34188;Length=13753.821 kb;GEO_SRA=SRR6898236;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAEC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW5FDAU7GE Download track ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW5FDAU7GE Data Source ATACdb_v1.03 Download track Download Number of intervals 132,079 bp covered 1,764,136 Output type transcription factor binding sites Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,188,997 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1464_hg38_motif_binding_sites.bed.gz Processed file md5 31b27b714f675489a27c63d272f15ed0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1464_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1464_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1464;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=B cell;Cancer_Type=Hypogammaglobulinemia;Region_Number=26705;Length=12010.347 kb;GEO_SRA=SRR5970488;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBW5UFHYSM7 Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBW5UFHYSM7 Data Source ATACdb_v1.03 Download track Download Number of intervals 85,066 bp covered 1,137,887 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,832,550 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1402_hg38_motif_binding_sites.bed.gz Processed file md5 156528954e838da45855c78b76887bdb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1402_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1402_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1402;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=24079;Length=11550.607 kb;GEO_SRA=SRR7183006;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBW5XNHUAGE Download track ATACdb_v1.03 Jurkat ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBW5XNHUAGE Data Source ATACdb_v1.03 Download track Download Number of intervals 184,640 bp covered 2,537,766 Output type transcription factor binding sites Genome build hg38 cell type Jurkat Biosample type Cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,380,473 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0884_hg38_motif_binding_sites.bed.gz Processed file md5 2696fedeef5f84b83a47f7d3eab98df6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0884_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0884_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0884;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=43310;Length=29867.127 kb;GEO_SRA=SRR5063985;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Jurkat ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]