NGADB3GBB4LBY7 Download track View in genome browser ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3GBB4LBY7 Data Source ATACdb_v1.03 Download track Download Number of intervals 22,023 bp covered 12,299,367 Output type accessible chromatin region Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 755,015 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0900_accessible_chromatin_regions_hg38.bed.gz Processed file md5 aa9ebcdc3c61950ca5d79327ba9c8415 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0900_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0900_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0900.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0900.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 d4e76a6fe8f68fa76a675872a7ef5965 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0900;Biosample_Type=Primary Cell;Tissue_Type=Lymphoblastoid;Biosample_Name=B cell;Cancer_Type=Epstein-Barr Virus (EBV);Region_Number=22083;Length=12350.231 kb;GEO_SRA=SRR5826004;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisan system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3GLJTFBEC Download track View in genome browser ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3GLJTFBEC Data Source ATACdb_v1.03 Download track Download Number of intervals 15,649 bp covered 5,002,986 Output type accessible chromatin region Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 479,629 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1461_accessible_chromatin_regions_hg38.bed.gz Processed file md5 cb1f6ef2d912d2689e844216d4909e8e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1461_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1461_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1461.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1461.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1462b07a9e4f636975846ed02df3a6d1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1461;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=B cell;Cancer_Type=Hypogammaglobulinemia;Region_Number=15675;Length=5011.303 kb;GEO_SRA=SRR5970483;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3GMDAW5LT Download track View in genome browser ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3GMDAW5LT Data Source ATACdb_v1.03 Download track Download Number of intervals 38,155 bp covered 14,320,718 Output type accessible chromatin region Genome build hg38 cell type HAEC Biosample type Not applicable Biosamples term id EFO:0022506 Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,212,503 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0111_accessible_chromatin_regions_hg38.bed.gz Processed file md5 70c0067fc91e784547b9620d48de766a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0111_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0111_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0111.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0111.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0dd4fee37f07f68ff1190258aa7dea50 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0111;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=HAEC;Cancer_Type=Coronary artery disease;Region_Number=38213;Length=14337.002 kb;GEO_SRA=SRR6898233;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3HK5XHSXS Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3HK5XHSXS Data Source ATACdb_v1.03 Download track Download Number of intervals 137,990 bp covered 88,510,509 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 4,285,193 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0773_accessible_chromatin_regions_hg38.bed.gz Processed file md5 32a8237468492fc9ecdf42f45333ec44 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0773_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0773_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0773.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0773.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0e3710b3d1f8ff993710246694acad6a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0773;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19108;Cancer_Type=Other;Region_Number=138149;Length=88629.544 kb;GEO_SRA=SRR6412491;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3HLMG4WN3 Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3HLMG4WN3 Data Source ATACdb_v1.03 Download track Download Number of intervals 36,991 bp covered 20,534,191 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,219,105 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0497_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ee58093a06fb3b707b1c5a8fa8e7e358 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0497_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0497_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0497.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0497.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 03a4c2b41808a9c7f6ed6c1223237729 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0497;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=ventrolateral prefrontal cortex;Cancer_Type=Other;Region_Number=37006;Length=20543.04 kb;GEO_SRA=SRR5367766;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3ICTUYO2T Download track View in genome browser ATACdb_v1.03 Plasmacytoid dendritic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3ICTUYO2T Data Source ATACdb_v1.03 Download track Download Number of intervals 140,596 bp covered 1,903,195 Output type transcription factor binding sites Genome build hg38 cell type Plasmacytoid dendritic cell Biosample type Primary cell Biosamples term id CL:0000784 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,800,419 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0627_hg38_motif_binding_sites.bed.gz Processed file md5 91133991c904f578dc64c944e177ccdb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0627_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0627_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0627;Biosample_Type=Primary Cell;Tissue_Type=Bone marrow;Biosample_Name=pDC;Cancer_Type=Normal;Region_Number=39309;Length=19012.226 kb;GEO_SRA=SRR5356166;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Skeletal life stage Unknown trackName ATACdb_v1.03 Plasmacytoid dendritic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3IGZLWOA5 Download track View in genome browser ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3IGZLWOA5 Data Source ATACdb_v1.03 Download track Download Number of intervals 50,172 bp covered 39,874,666 Output type accessible chromatin region Genome build hg38 cell type Jurkat Biosample type Cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,663,318 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0887_accessible_chromatin_regions_hg38.bed.gz Processed file md5 cd148fb1b2085ac5a37c4c0ba4428867 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0887_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0887_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0887.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0887.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 4bf408d8af9757ed51c0c989744ca961 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0887;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=50251;Length=39921.683 kb;GEO_SRA=SRR5063988;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3IISQXO7L Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3IISQXO7L Data Source ATACdb_v1.03 Download track Download Number of intervals 74,465 bp covered 989,367 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,367,859 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1275_hg38_motif_binding_sites.bed.gz Processed file md5 a136466e8cdc94f5233f13daa26199d6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1275_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1275_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1275;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=14723;Length=7499.922 kb;GEO_SRA=SRR1556354;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3IKOHN6FD Download track View in genome browser ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3IKOHN6FD Data Source ATACdb_v1.03 Download track Download Number of intervals 75,672 bp covered 27,596,091 Output type accessible chromatin region Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,397,965 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0398_accessible_chromatin_regions_hg38.bed.gz Processed file md5 1ff994f6b3ed7cb2024344d89aaa2a1e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0398_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0398_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0398.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0398.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 3c2a2477e50ccaffc7872ea2b799d909 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0398;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=75744;Length=27604.401 kb;GEO_SRA=SRR7690519;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3IN4HX2IQ Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3IN4HX2IQ Data Source ATACdb_v1.03 Download track Download Number of intervals 118,120 bp covered 1,585,228 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,007,792 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0493_hg38_motif_binding_sites.bed.gz Processed file md5 f491bea95c07e59218c276e2adf6f2d3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0493_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0493_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0493;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=37017;Length=15373.552 kb;GEO_SRA=SRR5367761;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3INTNRWT4 Download track View in genome browser ATACdb_v1.03 Hematopoietic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3INTNRWT4 Data Source ATACdb_v1.03 Download track Download Number of intervals 135,982 bp covered 1,858,520 Output type transcription factor binding sites Genome build hg38 cell type Hematopoietic cell Biosample type Stem cell Biosamples term id CL:0000988 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,793,611 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0747_hg38_motif_binding_sites.bed.gz Processed file md5 f1a93bdc6ab98b96db73d9729ede7cf7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0747_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0747_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0747;Biosample_Type=Stem Cell;Tissue_Type=Hematopoietic;Biosample_Name=MSCiPS1-derived 5F hematopoietic cell;Cancer_Type=Normal;Region_Number=48724;Length=16565.109 kb;GEO_SRA=SRR4820770;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Hematopoietic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3IQI5AGYR Download track View in genome browser ATACdb_v1.03 Anterior cingulate cortex BA24 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3IQI5AGYR Data Source ATACdb_v1.03 Download track Download Number of intervals 26,968 bp covered 17,107,312 Output type accessible chromatin region Genome build hg38 cell type Anterior cingulate cortex BA24 Biosample type Not applicable Biosamples term id UBERON:0009835 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 893,936 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0488_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7fbc843e99b91e0ff09d8011f92c1a47 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0488_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0488_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0488.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0488.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 13b59c1ad5d28c71e3688b9d1d0ba1fe Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0488;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=anterior cingulate cortex;Cancer_Type=Other;Region_Number=26978;Length=17111.59 kb;GEO_SRA=SRR5367755;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Anterior cingulate cortex BA24 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3J2SFJ5LE Download track View in genome browser ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3J2SFJ5LE Data Source ATACdb_v1.03 Download track Download Number of intervals 12,576 bp covered 181,617 Output type transcription factor binding sites Genome build hg38 cell type U2OS Biosample type Cell line Biosamples term id EFO:0002869 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 320,294 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0439_hg38_motif_binding_sites.bed.gz Processed file md5 9bc18f5dd970bdbd3f3b63eb7982f4a3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0439_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0439_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0439;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=3459;Length=2139.338 kb;GEO_SRA=SRR7537479;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Skeletal life stage Unknown trackName ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3JB2GC45R Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3JB2GC45R Data Source ATACdb_v1.03 Download track Download Number of intervals 133,859 bp covered 1,805,948 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,375,403 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0788_hg38_motif_binding_sites.bed.gz Processed file md5 f395109254e136ee2f9750e75eb1e6e9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0788_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0788_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0788;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19159;Cancer_Type=Other;Region_Number=35049;Length=17452.316 kb;GEO_SRA=SRR6412422;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3JBGEGX7E Download track View in genome browser ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3JBGEGX7E Data Source ATACdb_v1.03 Download track Download Number of intervals 240,194 bp covered 3,274,866 Output type transcription factor binding sites Genome build hg38 cell type Glioblastoma Biosample type Stem cell Biosamples term id NCIT:C3058 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,047,168 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0139_hg38_motif_binding_sites.bed.gz Processed file md5 4c04ec23c8d413d078366df433e6d879 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0139_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0139_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0139;Biosample_Type=Stem Cell;Tissue_Type=Brain;Biosample_Name=Glioblastoma stem cell;Cancer_Type=Glioblastoma;Region_Number=47772;Length=32195.251 kb;GEO_SRA=SRR7642283;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3JD3BVDLI Download track View in genome browser ATACdb_v1.03 RWPE1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3JD3BVDLI Data Source ATACdb_v1.03 Download track Download Number of intervals 93,207 bp covered 1,239,990 Output type transcription factor binding sites Genome build hg38 cell type RWPE1 Biosample type Cell line Biosamples term id EFO:0002323 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,116,639 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0590_hg38_motif_binding_sites.bed.gz Processed file md5 8d9e33bc6e0ba1b42ab243ec13bf8367 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0590_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0590_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0590;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=RWPE1;Cancer_Type=Normal;Region_Number=26574;Length=11062.593 kb;GEO_SRA=SRR7161071;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Reproductive life stage Unknown trackName ATACdb_v1.03 RWPE1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3JKKQF6ED Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3JKKQF6ED Data Source ATACdb_v1.03 Download track Download Number of intervals 64,919 bp covered 29,862,353 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,089,140 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0460_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d31d853035fb173656cb2bb904eca35a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0460_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0460_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0460.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0460.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e25dc56b789b389a688782ff70d3749f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0460;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=64948;Length=29874.498 kb;GEO_SRA=SRR5367724;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3M5EKRBZQ Download track View in genome browser ATACdb_v1.03 Prostate ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3M5EKRBZQ Data Source ATACdb_v1.03 Download track Download Number of intervals 10,769 bp covered 4,111,532 Output type accessible chromatin region Genome build hg38 cell type Prostate Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 340,809 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0190_accessible_chromatin_regions_hg38.bed.gz Processed file md5 90136762c5dd5404af0cb63fecf4f89e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0190_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0190_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0190.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0190.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 4043908357986df23454fff66e20c32b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0190;Biosample_Type=Tissue;Tissue_Type=Epithelial;Biosample_Name=Prostate;Cancer_Type=Prostate cancer;Region_Number=10805;Length=4139.204 kb;GEO_SRA=SRR7651682;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Reproductive life stage Unknown trackName ATACdb_v1.03 Prostate ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3M754F6YF Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3M754F6YF Data Source ATACdb_v1.03 Download track Download Number of intervals 179,384 bp covered 2,416,275 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,674,237 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0038_hg38_motif_binding_sites.bed.gz Processed file md5 87678e3c0ca0a30fef73ef729cf7a623 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0038_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0038_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0038;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=36031;Length=22655.659 kb;GEO_SRA=SRR5343854;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3MB3KLT7F Download track View in genome browser ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3MB3KLT7F Data Source ATACdb_v1.03 Download track Download Number of intervals 133,120 bp covered 1,766,865 Output type transcription factor binding sites Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,125,667 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0900_hg38_motif_binding_sites.bed.gz Processed file md5 dcdee5eb73e401f589dfc0fcc20bbfb4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0900_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0900_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0900;Biosample_Type=Primary Cell;Tissue_Type=Lymphoblastoid;Biosample_Name=B cell;Cancer_Type=Epstein-Barr Virus (EBV);Region_Number=22083;Length=12350.231 kb;GEO_SRA=SRR5826004;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisan system category Lymphatic life stage Unknown trackName ATACdb_v1.03 B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3MP25LJ2F Download track View in genome browser ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3MP25LJ2F Data Source ATACdb_v1.03 Download track Download Number of intervals 75,776 bp covered 50,279,611 Output type accessible chromatin region Genome build hg38 cell type BJ Biosample type Cell line Biosamples term id EFO:0002779 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,526,579 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1092_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e1d57fd3f7c787ece1cee0d061f2a690 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1092_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1092_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1092.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1092.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e03081c9736c508dae33191122e92fb2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1092;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Normal;Region_Number=75859;Length=50333.393 kb;GEO_SRA=GSM2174879;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Skeletal life stage Unknown trackName ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3NAEINOBE Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Show metadata Identifier NGADB3NAEINOBE Data Source ATACdb_v1.03 Download track Download Number of intervals 74,112 bp covered 38,623,364 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,427,509 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1405_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f360491213e92be0f076408cf44cea8c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1405_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1405_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1405.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1405.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 efaa8bf43c5ebc92a686ef157b86d06e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1405;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=74228;Length=38680.244 kb;GEO_SRA=SRR8098483;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
NGADB3NEHGPGNN Download track View in genome browser ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3NEHGPGNN Data Source ATACdb_v1.03 Download track Download Number of intervals 27,785 bp covered 11,912,981 Output type accessible chromatin region Genome build hg38 cell type EBV-transformed lymphocytes Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0022546 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 919,527 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0757_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f5a847f42972736ae2de2055611bd7e4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0757_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0757_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0757.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0757.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0774a50f88fcf5e8f23c89346e413973 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0757;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=27841;Length=11960.929 kb;GEO_SRA=SRR6412835;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3OPDEV7GB Download track View in genome browser ATACdb_v1.03 Inferior temporal lobe ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3OPDEV7GB Data Source ATACdb_v1.03 Download track Download Number of intervals 72,012 bp covered 981,402 Output type transcription factor binding sites Genome build hg38 cell type Inferior temporal lobe Biosample type Not applicable Biosamples term id UBERON:0006091 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,663,602 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0502_hg38_motif_binding_sites.bed.gz Processed file md5 bd83840381ad565393c0bff928a42975 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0502_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0502_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0502;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=inferior temporal cortex;Cancer_Type=Other;Region_Number=35219;Length=16721.96 kb;GEO_SRA=SRR5367771;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Nervous life stage Unknown trackName ATACdb_v1.03 Inferior temporal lobe ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3PDN5TMSL Download track View in genome browser ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3PDN5TMSL Data Source ATACdb_v1.03 Download track Download Number of intervals 23,649 bp covered 16,227,506 Output type accessible chromatin region Genome build hg38 cell type Jurkat Biosample type Cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 806,487 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0543_accessible_chromatin_regions_hg38.bed.gz Processed file md5 18ead90f496c93444ca765f31672b080 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0543_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0543_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0543.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0543.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 99ff2e932d55221bd11f04ce6cfc9dd5 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0543;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Jurkat;Cancer_Type=Leukemia;Region_Number=23687;Length=16251.162 kb;GEO_SRA=SRR7275228;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Jurkat ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3PFL4WGJM Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3PFL4WGJM Data Source ATACdb_v1.03 Download track Download Number of intervals 3,554 bp covered 1,130,042 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 109,697 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1296_accessible_chromatin_regions_hg38.bed.gz Processed file md5 60451011453270f79c5d04475c5330fc wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1296_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1296_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1296.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1296.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b4704af06901c7748b2bf867f9b1c7a9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1296;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=3567;Length=1131.749 kb;GEO_SRA=SRR1556375;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3PGLWHMXI Download track View in genome browser ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3PGLWHMXI Data Source ATACdb_v1.03 Download track Download Number of intervals 305,056 bp covered 4,275,913 Output type transcription factor binding sites Genome build hg38 cell type Nucleus accumbens Biosample type Tissue Biosamples term id UBERON:0001882 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 10,365,811 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0053_hg38_motif_binding_sites.bed.gz Processed file md5 7d64261c9e224081ff4de84cc02ce525 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0053_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0053_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0053;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Normal;Region_Number=110130;Length=45711.614 kb;GEO_SRA=SRR5343873;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3PPNFAEIA Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3PPNFAEIA Data Source ATACdb_v1.03 Download track Download Number of intervals 176,802 bp covered 2,428,511 Output type transcription factor binding sites Genome build hg38 cell type Fibroblast Biosample type Cell line Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,612,849 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0149_hg38_motif_binding_sites.bed.gz Processed file md5 0d0a88ca14490f07579b4a7d70e19250 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0149_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0149_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0149;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=Fibroblast;Cancer_Type=CAID Syndrome;Region_Number=64099;Length=36707.388 kb;GEO_SRA=SRR6726100;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3Q5WZBDF2 Download track View in genome browser ATACdb_v1.03 Naive T effector cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3Q5WZBDF2 Data Source ATACdb_v1.03 Download track Download Number of intervals 13,438 bp covered 5,702,420 Output type accessible chromatin region Genome build hg38 cell type Naive T effector cell Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 447,426 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0267_accessible_chromatin_regions_hg38.bed.gz Processed file md5 fa1d3f10fe9dd0844ef0806cf4c0c821 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0267_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0267_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0267.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0267.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b8a56c3da33c3c6181905a7988884747 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0267;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_Teffs;Cancer_Type=Normal;Region_Number=13500;Length=5747.557 kb;GEO_SRA=SRR7650798;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Naive T effector cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3QKZ5IKAJ Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB3QKZ5IKAJ Data Source ATACdb_v1.03 Download track Download Number of intervals 142,191 bp covered 1,899,496 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,513,062 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1398_hg38_motif_binding_sites.bed.gz Processed file md5 dcec95f126bffaa90a6e31e5588f4a2b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1398_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1398_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1398;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=31117;Length=18939.429 kb;GEO_SRA=SRR7183001;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB3QP3KLYQC Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3QP3KLYQC Data Source ATACdb_v1.03 Download track Download Number of intervals 49,695 bp covered 660,837 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,636,759 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0522_hg38_motif_binding_sites.bed.gz Processed file md5 637c6bcb97a1aaba65a3a07f2d938cda wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0522_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0522_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0522;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=15135;Length=4995.191 kb;GEO_SRA=SRR5367806;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3SCLMIAYA Download track View in genome browser ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3SCLMIAYA Data Source ATACdb_v1.03 Download track Download Number of intervals 19,035 bp covered 11,033,513 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 637,261 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0066_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2734980b85ae464d041f0cfcd19efbf8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0066_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0066_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0066.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0066.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7ea1104d7336f0faa8eb248ce64edd7b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0066;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=19089;Length=11074.405 kb;GEO_SRA=SRR5417030;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3TKMCRCVO Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3TKMCRCVO Data Source ATACdb_v1.03 Download track Download Number of intervals 28,715 bp covered 16,037,932 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 919,961 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0790_accessible_chromatin_regions_hg38.bed.gz Processed file md5 58a12510984336330d73b8743f21a676 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0790_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0790_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0790.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0790.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 002d16e803ec8dd09da0606aa0bdbe8a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0790;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19144;Cancer_Type=Other;Region_Number=28790;Length=16096.593 kb;GEO_SRA=SRR6412425;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3U34V33FD Download track View in genome browser ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB3U34V33FD Data Source ATACdb_v1.03 Download track Download Number of intervals 57,375 bp covered 761,680 Output type transcription factor binding sites Genome build hg38 cell type UCLA1 hESCs Biosample type Stem cell Biosamples term id CL:0002322 Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,911,000 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0022_hg38_motif_binding_sites.bed.gz Processed file md5 e7011cfbbcad41e43d4c4e2e8bc0fbc6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0022_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0022_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0022;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=primed UCLA1 hESCs;Cancer_Type=Normal;Region_Number=15922;Length=7372.703 kb;GEO_SRA=SRR7942746;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Embryo life stage Embryonic trackName ATACdb_v1.03 UCLA1 hESCs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB3U3YJOMWU Download track View in genome browser ATACdb_v1.03 Prostate ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3U3YJOMWU Data Source ATACdb_v1.03 Download track Download Number of intervals 21,997 bp covered 10,441,257 Output type accessible chromatin region Genome build hg38 cell type Prostate Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 713,519 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0187_accessible_chromatin_regions_hg38.bed.gz Processed file md5 0fe6726736326cceca681c1852bf30f7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0187_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0187_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0187.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0187.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1f5aca4b8e63a70a09e3f77798747582 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0187;Biosample_Type=Tissue;Tissue_Type=Epithelial;Biosample_Name=Prostate;Cancer_Type=Prostate cancer;Region_Number=22067;Length=10468.189 kb;GEO_SRA=SRR7651678;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 Prostate ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3URUXLKX7 Download track View in genome browser ATACdb_v1.03 Memory Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3URUXLKX7 Data Source ATACdb_v1.03 Download track Download Number of intervals 141,638 bp covered 1,913,394 Output type transcription factor binding sites Genome build hg38 cell type Memory Tregs Biosample type Not applicable Biosamples term id CL:0002678 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,810,501 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0304_hg38_motif_binding_sites.bed.gz Processed file md5 29fccf320b5b4c6d6a682f193c4796ef wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0304_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0304_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0304;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=45969;Length=17396.704 kb;GEO_SRA=SRR7650835;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3UUKLCDSD Download track View in genome browser ATACdb_v1.03 ME-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3UUKLCDSD Data Source ATACdb_v1.03 Download track Download Number of intervals 105,724 bp covered 1,432,397 Output type transcription factor binding sites Genome build hg38 cell type ME-1 Biosample type Cell line Biosamples term id EFO:0006645 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,700,978 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0616_hg38_motif_binding_sites.bed.gz Processed file md5 3dab20fbf0e4d54002efe1e07ca51023 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0616_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0616_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0616;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=ME-1;Cancer_Type=Leukemia;Region_Number=38188;Length=12164.034 kb;GEO_SRA=SRR5861514;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 ME-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3V2GDW46P Download track View in genome browser ATACdb_v1.03 T47D ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3V2GDW46P Data Source ATACdb_v1.03 Download track Download Number of intervals 30,955 bp covered 420,517 Output type transcription factor binding sites Genome build hg38 cell type T47D Biosample type Cell line Biosamples term id EFO:0001247 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 906,023 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0945_hg38_motif_binding_sites.bed.gz Processed file md5 a1775a659b11dbeb861419c5a93df7ac wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0945_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0945_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0945;Biosample_Type=Cell Line;Tissue_Type=Breast;Biosample_Name=T47D;Cancer_Type=Breast cancer;Region_Number=8962;Length=3246.468 kb;GEO_SRA=SRR5800798;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Reproductive life stage Unknown trackName ATACdb_v1.03 T47D ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3WJNRFGUG Download track View in genome browser ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3WJNRFGUG Data Source ATACdb_v1.03 Download track Download Number of intervals 60,165 bp covered 25,407,385 Output type accessible chromatin region Genome build hg38 cell type BJ Biosample type Cell line Biosamples term id EFO:0002779 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,922,696 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0718_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f17b35610bba750c16d6ba90f714f908 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0718_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0718_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0718.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0718.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 40e2e286f513aaafcb01be8ab1f4a8a7 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0718;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Other;Region_Number=60243;Length=25458.05 kb;GEO_SRA=GSM2430671;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgeme system category Skeletal life stage Unknown trackName ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3XUDI24PE Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3XUDI24PE Data Source ATACdb_v1.03 Download track Download Number of intervals 75,644 bp covered 1,004,483 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,397,841 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1265_hg38_motif_binding_sites.bed.gz Processed file md5 3be3011ff25b454f04dfa86f88d94e5d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1265_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1265_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1265;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=14775;Length=7379.334 kb;GEO_SRA=SRR1556344;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3XWKIK4YF Download track View in genome browser ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3XWKIK4YF Data Source ATACdb_v1.03 Download track Download Number of intervals 10,934 bp covered 6,467,808 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 359,089 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0070_accessible_chromatin_regions_hg38.bed.gz Processed file md5 907f92fe93e94f386f56610fbc14a3ac wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0070_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0070_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0070.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0070.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 fa77143bf117a5917cbc8856243552a6 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0070;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=10959;Length=6482.452 kb;GEO_SRA=SRR5417034;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3YY7HMWMJ Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB3YY7HMWMJ Data Source ATACdb_v1.03 Download track Download Number of intervals 144,739 bp covered 1,941,675 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,485,346 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0037_hg38_motif_binding_sites.bed.gz Processed file md5 0c073763c206e64c5e4ea22be6c09092 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0037_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0037_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0037;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=30721;Length=15510.548 kb;GEO_SRA=SRR5343853;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB3Z5HYD2VL Download track View in genome browser ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3Z5HYD2VL Data Source ATACdb_v1.03 Download track Download Number of intervals 24 bp covered 8,534 Output type accessible chromatin region Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,027 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1210_accessible_chromatin_regions_hg38.bed.gz Processed file md5 8d20cbccddc063d087ea2f69fac08e01 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1210_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1210_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1210.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1210.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 40df6579128b4579af6717a091db0515 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1210;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=25;Length=8.132 kb;GEO_SRA=SRR2171250;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgem system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB3ZKHS6O3R Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Show metadata Identifier NGADB3ZKHS6O3R Data Source ATACdb_v1.03 Download track Download Number of intervals 36,163 bp covered 12,675,956 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,169,749 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0655_accessible_chromatin_regions_hg38.bed.gz Processed file md5 4d873826af69b0d474fff620f803c129 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0655_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0655_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0655.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0655.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 15f6b5db580d20a1438085d5d9ed70a8 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0655;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=36226;Length=12689.173 kb;GEO_SRA=SRR5459170;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
NGADB3ZPILCU2T Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB3ZPILCU2T Data Source ATACdb_v1.03 Download track Download Number of intervals 64,653 bp covered 36,118,542 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,104,820 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1480_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9ba8f87962abe8b805e309e0530ef950 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1480_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1480_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1480.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1480.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 eacb7cdc93fbdd7e6a41998d6514febe Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1480;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=CEC;Cancer_Type=Other;Region_Number=64704;Length=36151.666 kb;GEO_SRA=SRR1982095;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB427VCNGYP Download track View in genome browser ATACdb_v1.03 CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB427VCNGYP Data Source ATACdb_v1.03 Download track Download Number of intervals 10,411 bp covered 141,347 Output type transcription factor binding sites Genome build hg38 cell type CD8+ T cell Biosample type Cell line Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 297,756 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0849_hg38_motif_binding_sites.bed.gz Processed file md5 8e2a56b931bca5ba2c375971eaa7edff wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0849_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0849_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0849;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=T_T;Cancer_Type=The Yellow fever;Region_Number=2540;Length=971.211 kb;GEO_SRA=SRR5839501;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB42AX6H2KR Download track View in genome browser ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB42AX6H2KR Data Source ATACdb_v1.03 Download track Download Number of intervals 87,383 bp covered 59,021,279 Output type accessible chromatin region Genome build hg38 cell type BJ Biosample type Cell line Biosamples term id EFO:0002779 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,899,610 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1089_accessible_chromatin_regions_hg38.bed.gz Processed file md5 27193eb1c9f917cfe665df6d7b2b8800 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1089_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1089_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1089.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1089.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1bf5ef9a0ce41f198b156fac61025d42 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1089;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=BJ;Cancer_Type=Normal;Region_Number=87464;Length=59104.039 kb;GEO_SRA=GSM2174876;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Skeletal life stage Unknown trackName ATACdb_v1.03 BJ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB42L2AQDW6 Download track View in genome browser ATACdb_v1.03 MUG-Chor1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB42L2AQDW6 Data Source ATACdb_v1.03 Download track Download Number of intervals 15,267 bp covered 5,895,663 Output type accessible chromatin region Genome build hg38 cell type MUG-Chor1 Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 494,848 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1448_accessible_chromatin_regions_hg38.bed.gz Processed file md5 311f6c959b7df3a234167c2484663ffe wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1448_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1448_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1448.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1448.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 be7f1dfe99f590a5f27c88f801b495c1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1448;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=MUG-Chor1;Cancer_Type=Chordoma;Region_Number=15288;Length=5904.515 kb;GEO_SRA=SRR6635719;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ack system category Skeletal life stage Unknown trackName ATACdb_v1.03 MUG-Chor1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB42V7UZOPT Download track View in genome browser ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB42V7UZOPT Data Source ATACdb_v1.03 Download track Download Number of intervals 134,436 bp covered 1,866,122 Output type transcription factor binding sites Genome build hg38 cell type EBV-transformed lymphocytes Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0022546 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,975,492 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0753_hg38_motif_binding_sites.bed.gz Processed file md5 2701373f8926470d8e7543761ca08cdf wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0753_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0753_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0753;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=54878;Length=21478.866 kb;GEO_SRA=SRR6412831;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB42WITQYP7 Download track View in genome browser ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB42WITQYP7 Data Source ATACdb_v1.03 Download track Download Number of intervals 38,107 bp covered 512,467 Output type transcription factor binding sites Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,266,497 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1330_hg38_motif_binding_sites.bed.gz Processed file md5 618c8683f268f858f8e7b92d55b8408c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1330_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1330_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1330;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=12773;Length=4257.543 kb;GEO_SRA=SRR8571953;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwan system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]