NGADBS3VQTQPRR Download track View in genome browser ATACdb_v1.03 Insula ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS3VQTQPRR Data Source ATACdb_v1.03 Download track Download Number of intervals 30,359 bp covered 13,911,383 Output type accessible chromatin region Genome build hg38 cell type Insula Biosample type Not applicable Biosamples term id UBERON:0002022 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 910,517 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0501_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6fcd082e36f97c8515eb22727976fd67 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0501_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0501_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0501.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0501.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e34e15b565297d7131a64bbfeb5e9008 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0501;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=insula;Cancer_Type=Other;Region_Number=30365;Length=13913.594 kb;GEO_SRA=SRR5367770;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Nervous life stage Unknown trackName ATACdb_v1.03 Insula ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS3X5GIMW4 Download track View in genome browser ATACdb_v1.03 Lung ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS3X5GIMW4 Data Source ATACdb_v1.03 Download track Download Number of intervals 99,703 bp covered 1,327,458 Output type transcription factor binding sites Genome build hg38 cell type Lung Biosample type Tissue Biosamples term id UBERON:0002048 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,324,919 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0196_hg38_motif_binding_sites.bed.gz Processed file md5 6127c8eda11d950dd3983b8dbdcef054 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0196_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0196_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0196;Biosample_Type=Tissue;Tissue_Type=Epithelial;Biosample_Name=Lung;Cancer_Type=Lung cancer;Region_Number=24432;Length=14102.051 kb;GEO_SRA=SRR7651688;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Respiratory life stage Unknown trackName ATACdb_v1.03 Lung ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS45CWTNYS Download track View in genome browser ATACdb_v1.03 Macrophage ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS45CWTNYS Data Source ATACdb_v1.03 Download track Download Number of intervals 57,171 bp covered 764,884 Output type transcription factor binding sites Genome build hg38 cell type Macrophage Biosample type Primary cell Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,850,245 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1025_hg38_motif_binding_sites.bed.gz Processed file md5 b8d2bb523ded5118ae80cc58ddfbf2ce wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1025_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1025_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1025;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=Macrophage;Cancer_Type=Normal;Region_Number=14930;Length=5587.141 kb;GEO_SRA=SRR4450160;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/G system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS4AJZT6OT Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS4AJZT6OT Data Source ATACdb_v1.03 Download track Download Number of intervals 35,924 bp covered 22,706,055 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,187,705 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0038_accessible_chromatin_regions_hg38.bed.gz Processed file md5 cb875c6ee460d986dce4d9f7f07dc6e7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0038_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0038_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0038.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0038.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 4789fabc15fa86ba0e756d581be56abc Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0038;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=36031;Length=22655.659 kb;GEO_SRA=SRR5343854;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS54H4DRVX Download track View in genome browser ATACdb_v1.03 HT1080 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS54H4DRVX Data Source ATACdb_v1.03 Download track Download Number of intervals 46,022 bp covered 18,811,747 Output type accessible chromatin region Genome build hg38 cell type HT1080 Biosample type Cell line Biosamples term id EFO:0002059 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,518,115 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1123_accessible_chromatin_regions_hg38.bed.gz Processed file md5 80c851984719e952ccc96de4729de601 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1123_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1123_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1123.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1123.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f9894f5ee68f87fed1d51a9e01be0d1c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1123;Biosample_Type=Cell Line;Tissue_Type=Connective tissue;Biosample_Name=HT1080;Cancer_Type=Fibroscarcoma;Region_Number=46072;Length=18802.531 kb;GEO_SRA=SRR2999321;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org system category Skeletal life stage Unknown trackName ATACdb_v1.03 HT1080 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS5UK2PGRV Download track View in genome browser ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS5UK2PGRV Data Source ATACdb_v1.03 Download track Download Number of intervals 197,197 bp covered 2,678,600 Output type transcription factor binding sites Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id CL:1001608 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,273,655 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0686_hg38_motif_binding_sites.bed.gz Processed file md5 8a26e0ae4ccbe1f512a0f2508878708f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0686_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0686_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0686;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=78655;Length=37098.085 kb;GEO_SRA=GSM2688936;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS6G4QEHFA Download track View in genome browser ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS6G4QEHFA Data Source ATACdb_v1.03 Download track Download Number of intervals 33,036 bp covered 23,703,810 Output type accessible chromatin region Genome build hg38 cell type Memory Tregs Biosample type Not applicable Biosamples term id CL:0002678 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,127,145 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0221_accessible_chromatin_regions_hg38.bed.gz Processed file md5 b6cd177b15f258c8238a231daab41418 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0221_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0221_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0221.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0221.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 23762a6419197572d63a90096ae60ace Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0221;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=33123;Length=23766.375 kb;GEO_SRA=SRR7650751;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS6S2HFHYX Download track View in genome browser ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS6S2HFHYX Data Source ATACdb_v1.03 Download track Download Number of intervals 80,273 bp covered 1,047,924 Output type transcription factor binding sites Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,316,813 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1038_hg38_motif_binding_sites.bed.gz Processed file md5 c8c9e2f3889608610ad4978590520af5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1038_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1038_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1038;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=11115;Length=5643.286 kb;GEO_SRA=SRR5128075;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS7ATCPLXX Download track View in genome browser ATACdb_v1.03 Melanocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS7ATCPLXX Data Source ATACdb_v1.03 Download track Download Number of intervals 111,723 bp covered 60,012,180 Output type accessible chromatin region Genome build hg38 cell type Melanocyte Biosample type Cell line Biosamples term id CL:0000148 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 3,563,495 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0855_accessible_chromatin_regions_hg38.bed.gz Processed file md5 27b22bf631b44ce44b3c12b36ab93790 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0855_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0855_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0855.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0855.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0234fb147d273848ddc55d1ceb4e499e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0855;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=foreskin_NHM1;Cancer_Type=Normal;Region_Number=111821;Length=60081.939 kb;GEO_SRA=SRR5228487;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Integumentary life stage Unknown trackName ATACdb_v1.03 Melanocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS7DAU7AXO Download track View in genome browser ATACdb_v1.03 Skin ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS7DAU7AXO Data Source ATACdb_v1.03 Download track Download Number of intervals 78,928 bp covered 1,079,112 Output type transcription factor binding sites Genome build hg38 cell type Skin Biosample type Not applicable Biosamples term id UBERON:0002097 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,985,603 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1380_hg38_motif_binding_sites.bed.gz Processed file md5 7e6d0177d3edbac97fca0829a3fce356 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1380_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1380_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1380;Biosample_Type=Other;Tissue_Type=Skin;Biosample_Name=Skin;Cancer_Type=Normal;Region_Number=41804;Length=14533.802 kb;GEO_SRA=SRR8558128;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgeme system category Integumentary life stage Unknown trackName ATACdb_v1.03 Skin ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS7HJBLKWO Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Show metadata Identifier NGADBS7HJBLKWO Data Source ATACdb_v1.03 Download track Download Number of intervals 17,841 bp covered 5,971,647 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 566,353 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1393_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7c0f5cd3b12e7bd51f42b967a83c18d1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1393_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1393_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1393.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1393.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 66dea8fb3870e4449eb21c873f52ab78 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1393;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=17905;Length=6013.455 kb;GEO_SRA=SRR7182996;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
NGADBS7Q626AT7 Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBS7Q626AT7 Data Source ATACdb_v1.03 Download track Download Number of intervals 5,835 bp covered 2,104,432 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 188,788 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1256_accessible_chromatin_regions_hg38.bed.gz Processed file md5 1196109cd55c4cedb2a6e74c5610d591 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1256_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1256_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1256.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1256.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 d4e7ad1f0a2ce6b29af19c29fe2b0c90 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1256;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=5858;Length=2101.9 kb;GEO_SRA=SRR1556335;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBS7T5FHBOV Download track View in genome browser ATACdb_v1.03 HEK293T ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS7T5FHBOV Data Source ATACdb_v1.03 Download track Download Number of intervals 3,892 bp covered 54,601 Output type transcription factor binding sites Genome build hg38 cell type HEK293T Biosample type Cell line Biosamples term id EFO:0001184 Tissue category Kidney ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 115,082 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1013_hg38_motif_binding_sites.bed.gz Processed file md5 02bbb6d14477d17745c860dd0dce6b53 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1013_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1013_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1013;Biosample_Type=Cell Line;Tissue_Type=Kidney;Biosample_Name=HEK293T;Cancer_Type=Normal;Region_Number=913;Length=576.769 kb;GEO_SRA=SRR5627156;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Renal life stage Unknown trackName ATACdb_v1.03 HEK293T ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBS7WBCTTBI Download track View in genome browser ATACdb_v1.03 SK-MEL-239 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBS7WBCTTBI Data Source ATACdb_v1.03 Download track Download Number of intervals 313,332 bp covered 4,300,964 Output type transcription factor binding sites Genome build hg38 cell type SK-MEL-239 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 11,425,168 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0386_hg38_motif_binding_sites.bed.gz Processed file md5 69c75d1159d2ec6d40632d0d9b6730e8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0386_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0386_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0386;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=SIRT6.2-7;Cancer_Type=Melanoma;Region_Number=96841;Length=63614.925 kb;GEO_SRA=SRR6950063;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Integumentary life stage Unknown trackName ATACdb_v1.03 SK-MEL-239 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSAQV55KZE Download track View in genome browser ATACdb_v1.03 Hematopoietic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSAQV55KZE Data Source ATACdb_v1.03 Download track Download Number of intervals 97,204 bp covered 1,308,710 Output type transcription factor binding sites Genome build hg38 cell type Hematopoietic cell Biosample type Stem cell Biosamples term id CL:0000988 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,224,748 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0746_hg38_motif_binding_sites.bed.gz Processed file md5 d9d4c01d4724bc23868dc273db7fa5c8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0746_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0746_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0746;Biosample_Type=Stem Cell;Tissue_Type=Hematopoietic;Biosample_Name=MSCiPS1-derived 5F hematopoietic cell;Cancer_Type=Normal;Region_Number=26958;Length=9427.814 kb;GEO_SRA=SRR4820768;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:// system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Hematopoietic cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSBDU5BPKY Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSBDU5BPKY Data Source ATACdb_v1.03 Download track Download Number of intervals 6,287 bp covered 2,067,857 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 197,123 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1244_accessible_chromatin_regions_hg38.bed.gz Processed file md5 299e16c737d6de510b67f0296a75647e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1244_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1244_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1244.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1244.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 163755310dd94e69d1efd47baeb230d9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1244;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=6303;Length=2071.477 kb;GEO_SRA=SRR1556323;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSC2NHPIBE Download track View in genome browser ATACdb_v1.03 T-ALL leukemia ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSC2NHPIBE Data Source ATACdb_v1.03 Download track Download Number of intervals 305,932 bp covered 4,179,385 Output type transcription factor binding sites Genome build hg38 cell type T-ALL leukemia Biosample type Tissue Biosamples term id NCIT:C27134 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 10,452,003 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0034_hg38_motif_binding_sites.bed.gz Processed file md5 58cc6571256c429c41153f03013f2d51 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0034_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0034_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0034;Biosample_Type=Tissue;Tissue_Type=Blood;Biosample_Name=Hematologic malignancy;Cancer_Type=Leukemia;Region_Number=71638;Length=43085.034 kb;GEO_SRA=SRR8361362;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 T-ALL leukemia ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSC4HKUQCG Download track View in genome browser ATACdb_v1.03 Putamen ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSC4HKUQCG Data Source ATACdb_v1.03 Download track Download Number of intervals 79,719 bp covered 1,076,535 Output type transcription factor binding sites Genome build hg38 cell type Putamen Biosample type Not applicable Biosamples term id UBERON:0001874 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,774,571 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0473_hg38_motif_binding_sites.bed.gz Processed file md5 2a430acafdd862f35df5c7386a01a995 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0473_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0473_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0473;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=putamen;Cancer_Type=Other;Region_Number=27790;Length=10717.422 kb;GEO_SRA=SRR5367740;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledg system category Nervous life stage Unknown trackName ATACdb_v1.03 Putamen ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSCERM32AP Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSCERM32AP Data Source ATACdb_v1.03 Download track Download Number of intervals 29,089 bp covered 9,772,380 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Cell line Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 905,723 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0959_accessible_chromatin_regions_hg38.bed.gz Processed file md5 13fbabf81de02b4c77d52cb12c4b3d08 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0959_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0959_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0959.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0959.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 76e1335f3a7d0025b9297be3acd3b17a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0959;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=GM02171;Cancer_Type=Normal;Region_Number=29204;Length=9842.487 kb;GEO_SRA=SRR5878915;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSDL7K5YYC Download track View in genome browser ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSDL7K5YYC Data Source ATACdb_v1.03 Download track Download Number of intervals 27,562 bp covered 16,972,028 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 919,817 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0063_accessible_chromatin_regions_hg38.bed.gz Processed file md5 eab248c1fc69094ca466bc51a54e39da wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0063_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0063_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0063.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0063.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 515e37830f0ae2f6030c2d13bfc8352f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0063;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=27629;Length=17015.556 kb;GEO_SRA=SRR5417027;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSE23F3BG5 Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADBSE23F3BG5 Data Source ATACdb_v1.03 Download track Download Number of intervals 199,793 bp covered 2,695,891 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,739,397 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1395_hg38_motif_binding_sites.bed.gz Processed file md5 f476c8fd233cb01fead4d1e867b802e8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1395_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1395_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1395;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=54504;Length=31240.143 kb;GEO_SRA=SRR7182998;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADBSE6H2LK72 Download track View in genome browser ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSE6H2LK72 Data Source ATACdb_v1.03 Download track Download Number of intervals 77,964 bp covered 1,026,274 Output type transcription factor binding sites Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,315,765 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0056_hg38_motif_binding_sites.bed.gz Processed file md5 d5726a89a37bd362622569fc8521ba23 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0056_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0056_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0056;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=11332;Length=6955.472 kb;GEO_SRA=SRR5417020;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSFKRHEQJP Download track View in genome browser ATACdb_v1.03 Monocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSFKRHEQJP Data Source ATACdb_v1.03 Download track Download Number of intervals 23,387 bp covered 13,267,131 Output type accessible chromatin region Genome build hg38 cell type Monocyte Biosample type Not applicable Biosamples term id CL:0000576 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 788,731 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0358_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d6c7e9411fbf05b7e2def10b9a8c9ec0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0358_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0358_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0358.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0358.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f8ab0e4851249cc796d28460d3977175 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0358;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Monocytes;Cancer_Type=Normal;Region_Number=23459;Length=13276.167 kb;GEO_SRA=SRR7650914;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Monocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSFOU5VZJS Download track View in genome browser ATACdb_v1.03 TOV-21G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSFOU5VZJS Data Source ATACdb_v1.03 Download track Download Number of intervals 105,565 bp covered 1,417,997 Output type transcription factor binding sites Genome build hg38 cell type TOV-21G Biosample type Cell line Biosamples term id Not available Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,496,560 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0873_hg38_motif_binding_sites.bed.gz Processed file md5 d6844254b439a37c5a04bc6939f85796 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0873_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0873_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0873;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=TOV-21G;Cancer_Type=Ovarion cancer;Region_Number=28853;Length=12382.92 kb;GEO_SRA=SRR5876663;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Reproductive life stage Unknown trackName ATACdb_v1.03 TOV-21G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSHLJS42ZQ Download track View in genome browser ATACdb_v1.03 22Rv1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSHLJS42ZQ Data Source ATACdb_v1.03 Download track Download Number of intervals 45,985 bp covered 35,917,200 Output type accessible chromatin region Genome build hg38 cell type 22Rv1 Biosample type Cell line Biosamples term id EFO:0002095 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,527,947 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1452_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a2acbf294bbacc1dbc8ce5f2b89b5230 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1452_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1452_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1452.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1452.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8a63c727a821928a783025fd9684d362 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1452;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=22RV-1;Cancer_Type=Prostate cancer;Region_Number=46077;Length=35981.87 kb;GEO_SRA=SRR7290302;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Reproductive life stage Unknown trackName ATACdb_v1.03 22Rv1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSHLVIHC42 Download track View in genome browser ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSHLVIHC42 Data Source ATACdb_v1.03 Download track Download Number of intervals 84,812 bp covered 39,748,799 Output type accessible chromatin region Genome build hg38 cell type Macrophage Biosample type Primary cell Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,766,189 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0999_accessible_chromatin_regions_hg38.bed.gz Processed file md5 40416237a08fdfc1061410ca2904e875 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0999_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0999_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0999.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0999.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 494cdeea323a97da74ab211d90449e36 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0999;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=monocyte-derived macrophages;Cancer_Type=Normal;Region_Number=84990;Length=39464.4 kb;GEO_SRA=SRR5487872;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSHRTR3CMP Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADBSHRTR3CMP Data Source ATACdb_v1.03 Download track Download Number of intervals 116,312 bp covered 1,546,470 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,736,255 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1391_hg38_motif_binding_sites.bed.gz Processed file md5 82793393dcb4cb3bcd15922acb08d232 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1391_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1391_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1391;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=28893;Length=14243.46 kb;GEO_SRA=SRR6387579;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADBSIGKQUXW3 Download track View in genome browser ATACdb_v1.03 FT190 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSIGKQUXW3 Data Source ATACdb_v1.03 Download track Download Number of intervals 113,239 bp covered 1,522,890 Output type transcription factor binding sites Genome build hg38 cell type FT190 Biosample type Cell line Biosamples term id Not available Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,947,125 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1363_hg38_motif_binding_sites.bed.gz Processed file md5 b5767f24f883947c33d0bb7184053e2a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1363_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1363_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1363;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=FT190;Cancer_Type=Ovarion cancer;Region_Number=31633;Length=18593.165 kb;GEO_SRA=GSM3462380;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Reproductive life stage Unknown trackName ATACdb_v1.03 FT190 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSJ7UYRBX4 Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSJ7UYRBX4 Data Source ATACdb_v1.03 Download track Download Number of intervals 7,776 bp covered 3,133,545 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 244,136 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1246_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d6397559f93b764398a2568b61a0a309 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1246_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1246_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1246.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1246.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 caea360525564c2e7b3e7df6c9e235f7 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1246;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=7785;Length=3134.858 kb;GEO_SRA=SRR1556325;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSJIYVRO3I Download track View in genome browser ATACdb_v1.03 Memory B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSJIYVRO3I Data Source ATACdb_v1.03 Download track Download Number of intervals 167,604 bp covered 2,284,964 Output type transcription factor binding sites Genome build hg38 cell type Memory B cell Biosample type Not applicable Biosamples term id CL:0000787 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,745,082 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0284_hg38_motif_binding_sites.bed.gz Processed file md5 1a41300b5e399622094cf4598fbbd9b9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0284_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0284_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0284;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Mem_B;Cancer_Type=Normal;Region_Number=52703;Length=19592.653 kb;GEO_SRA=SRR7650815;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory B cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSJJH5RYQZ Download track View in genome browser ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSJJH5RYQZ Data Source ATACdb_v1.03 Download track Download Number of intervals 40,505 bp covered 24,792,175 Output type accessible chromatin region Genome build hg38 cell type Chronic lymphocytic leukemia Biosample type Cell line Biosamples term id NCIT:C3163 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,342,306 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0093_accessible_chromatin_regions_hg38.bed.gz Processed file md5 bcadb66c4cf6c5f29d16b04d27c9c731 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0093_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0093_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0093.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0093.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7223a8060dc53a737d74bdafe393c83b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0093;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CLL;Cancer_Type=Leukemia;Region_Number=40549;Length=24809.825 kb;GEO_SRA=SRR7815323;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSJVULS3ZE Download track View in genome browser ATACdb_v1.03 T98G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSJVULS3ZE Data Source ATACdb_v1.03 Download track Download Number of intervals 92,192 bp covered 1,215,962 Output type transcription factor binding sites Genome build hg38 cell type T98G Biosample type Cell line Biosamples term id EFO:0002085 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,724,778 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0367_hg38_motif_binding_sites.bed.gz Processed file md5 f737c81b78e973e616420d648384cf65 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0367_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0367_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0367;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=T98G;Cancer_Type=Glioblastoma;Region_Number=12615;Length=8882.157 kb;GEO_SRA=SRR6251844;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ack system category Nervous life stage Unknown trackName ATACdb_v1.03 T98G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSK3CMVTUF Download track View in genome browser ATACdb_v1.03 YB5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSK3CMVTUF Data Source ATACdb_v1.03 Download track Download Number of intervals 2,137 bp covered 812,280 Output type accessible chromatin region Genome build hg38 cell type YB5 Biosample type Cell line Biosamples term id Not available Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 68,096 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0157_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6addb3bbf5e5937eedcd6d70498618d2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0157_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0157_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0157.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0157.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e9bbfae5ab55ea8d9e5641dd97a36687 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0157;Biosample_Type=Cell Line;Tissue_Type=Colon;Biosample_Name=YB5;Cancer_Type=Colon cancer;Region_Number=2141;Length=815.665 kb;GEO_SRA=SRR7060333;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Digestive life stage Unknown trackName ATACdb_v1.03 YB5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSK3FT6LGO Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSK3FT6LGO Data Source ATACdb_v1.03 Download track Download Number of intervals 65,874 bp covered 33,656,269 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Cell line Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,157,541 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0147_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c052f0c9ca16bfd99f9f16ba8203e082 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0147_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0147_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0147.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0147.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 eee2ec3597f3f0ddabd0146c07b2a6c1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0147;Biosample_Type=Cell Line;Tissue_Type=Skin;Biosample_Name=Fibroblast;Cancer_Type=CAID Syndrome;Region_Number=65917;Length=33666.6 kb;GEO_SRA=SRR6726095;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSK4V3RLE3 Download track View in genome browser ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSK4V3RLE3 Data Source ATACdb_v1.03 Download track Download Number of intervals 21,061 bp covered 7,128,384 Output type accessible chromatin region Genome build hg38 cell type Temporal cortex Biosample type Not applicable Biosamples term id UBERON:0016538 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 691,355 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0474_accessible_chromatin_regions_hg38.bed.gz Processed file md5 3e7afedce56970bba361352c973f22e5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0474_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0474_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0474.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0474.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 2ddc89618da46f329285935a60057d0b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0474;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=21076;Length=7132.48 kb;GEO_SRA=SRR5367741;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system category Nervous life stage Unknown trackName ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSKVDGSRY4 Download track View in genome browser ATACdb_v1.03 Hippocampus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSKVDGSRY4 Data Source ATACdb_v1.03 Download track Download Number of intervals 38,101 bp covered 20,576,819 Output type accessible chromatin region Genome build hg38 cell type Hippocampus Biosample type Not applicable Biosamples term id NCIT:C12444 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,234,729 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0490_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ec52b6fde3d3d51800ee0225738a5249 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0490_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0490_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0490.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0490.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0db27bdc745d0dff3cecfbb5bd074101 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0490;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=hippocampus;Cancer_Type=Other;Region_Number=38116;Length=20584.995 kb;GEO_SRA=SRR5367757;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Nervous life stage Unknown trackName ATACdb_v1.03 Hippocampus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSKX2VSDOE Download track View in genome browser ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSKX2VSDOE Data Source ATACdb_v1.03 Download track Download Number of intervals 1,414 bp covered 20,184 Output type transcription factor binding sites Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 40,972 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1315_hg38_motif_binding_sites.bed.gz Processed file md5 e9f6c0601c0675055debd788565c8752 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1315_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1315_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1315;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=403;Length=257.957 kb;GEO_SRA=SRR891273;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledg system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSKXHWU3ME Download track View in genome browser ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSKXHWU3ME Data Source ATACdb_v1.03 Download track Download Number of intervals 201,584 bp covered 2,722,013 Output type transcription factor binding sites Genome build hg38 cell type Glioblastoma Biosample type Stem cell Biosamples term id NCIT:C3058 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,648,143 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0142_hg38_motif_binding_sites.bed.gz Processed file md5 4f823dfd791b6feb35703b0e57bdb6e3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0142_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0142_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0142;Biosample_Type=Stem Cell;Tissue_Type=Brain;Biosample_Name=Glioblastoma stem cell;Cancer_Type=Glioblastoma;Region_Number=38529;Length=25105.848 kb;GEO_SRA=SRR7642286;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSLAE7AWXJ Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSLAE7AWXJ Data Source ATACdb_v1.03 Download track Download Number of intervals 200,471 bp covered 2,719,575 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,742,172 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0819_hg38_motif_binding_sites.bed.gz Processed file md5 a526d49f510b058f8a5b67346ec4343c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0819_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0819_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0819;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18501;Cancer_Type=Other;Region_Number=52117;Length=28143.488 kb;GEO_SRA=SRR6412462;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSLHH6BSLM Download track View in genome browser ATACdb_v1.03 Memory Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSLHH6BSLM Data Source ATACdb_v1.03 Download track Download Number of intervals 190,264 bp covered 2,572,812 Output type transcription factor binding sites Genome build hg38 cell type Memory Tregs Biosample type Not applicable Biosamples term id CL:0002678 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,090,694 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0221_hg38_motif_binding_sites.bed.gz Processed file md5 33f9c66f1a711da7ac7014a3eebefb12 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0221_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0221_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0221;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=33123;Length=23766.375 kb;GEO_SRA=SRR7650751;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory Tregs ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSLYIOMVPV Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSLYIOMVPV Data Source ATACdb_v1.03 Download track Download Number of intervals 279,675 bp covered 3,846,499 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 10,150,581 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0815_hg38_motif_binding_sites.bed.gz Processed file md5 df3ce57be138602383841789baf4a20e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0815_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0815_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0815;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18510;Cancer_Type=Other;Region_Number=93854;Length=55911.184 kb;GEO_SRA=SRR6412458;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSMCLBI5JP Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSMCLBI5JP Data Source ATACdb_v1.03 Download track Download Number of intervals 168,729 bp covered 2,285,752 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,997,370 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0460_hg38_motif_binding_sites.bed.gz Processed file md5 159dc1a66efefac09ed2d3be02d83932 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0460_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0460_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0460;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=64948;Length=29874.498 kb;GEO_SRA=SRR5367724;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSMET4FMUT Download track View in genome browser ATACdb_v1.03 Cerebellum ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSMET4FMUT Data Source ATACdb_v1.03 Download track Download Number of intervals 75,781 bp covered 38,603,847 Output type accessible chromatin region Genome build hg38 cell type Cerebellum Biosample type Tissue Biosamples term id UBERON:0002037 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,506,599 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1455_accessible_chromatin_regions_hg38.bed.gz Processed file md5 552a95ef446332a617af6c0b0c15d8f4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1455_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1455_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1455.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1455.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 39cad92e7bc40c5ce07cdad1dc204fdb Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1455;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=cerebellum;Cancer_Type=Other;Region_Number=75830;Length=38622.293 kb;GEO_SRA=SRR6956275;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Nervous life stage Unknown trackName ATACdb_v1.03 Cerebellum ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSMOKL2HG7 Download track View in genome browser ATACdb_v1.03 CM CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSMOKL2HG7 Data Source ATACdb_v1.03 Download track Download Number of intervals 210,904 bp covered 2,868,132 Output type transcription factor binding sites Genome build hg38 cell type CM CD8+ T cell Biosample type Not applicable Biosamples term id CL:0000907 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,196,208 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0250_hg38_motif_binding_sites.bed.gz Processed file md5 78bd0a6fefc1f432e8f9ef0a62a8ad19 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0250_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0250_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0250;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Central_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=55905;Length=29634.532 kb;GEO_SRA=SRR7650781;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CM CD8+ T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSMWQJ6ZXQ Download track View in genome browser ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSMWQJ6ZXQ Data Source ATACdb_v1.03 Download track Download Number of intervals 140,733 bp covered 1,912,394 Output type transcription factor binding sites Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,176,281 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0394_hg38_motif_binding_sites.bed.gz Processed file md5 34e3dab3aca1f57c7266e652291ccc8e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0394_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0394_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0394;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=65785;Length=21782.315 kb;GEO_SRA=SRR7690515;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSNHLHANXC Download track View in genome browser ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSNHLHANXC Data Source ATACdb_v1.03 Download track Download Number of intervals 15,903 bp covered 7,799,074 Output type accessible chromatin region Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 521,807 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1442_accessible_chromatin_regions_hg38.bed.gz Processed file md5 051c3b66d1df5ea9a786177ceef55d84 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1442_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1442_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1442.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1442.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 33262f1d7b138619fdafcd5cdff7d52f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1442;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Other;Region_Number=15955;Length=7821.905 kb;GEO_SRA=SRR8255925;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSOIBYGFWN Download track View in genome browser ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSOIBYGFWN Data Source ATACdb_v1.03 Download track Download Number of intervals 100,846 bp covered 1,431,101 Output type transcription factor binding sites Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,967,508 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1204_hg38_motif_binding_sites.bed.gz Processed file md5 d569eb344108967a46b3a4edfab69364 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1204_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1204_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1204;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=52127;Length=15765.434 kb;GEO_SRA=SRR2171236;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADBSORQ6FYMZ Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSORQ6FYMZ Data Source ATACdb_v1.03 Download track Download Number of intervals 42,602 bp covered 19,848,380 Output type accessible chromatin region Genome build hg38 cell type Fibroblast Biosample type Cell line Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,370,505 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0957_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f7167ee47e99b3ca03df4ce88c5729c8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0957_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0957_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0957.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0957.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 cfe60524dd9434e1da8a57babe7dc045 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0957;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=GM02171;Cancer_Type=Normal;Region_Number=42707;Length=19887.66 kb;GEO_SRA=SRR5878913;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSOWDA36A7 Download track View in genome browser ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADBSOWDA36A7 Data Source ATACdb_v1.03 Download track Download Number of intervals 31,855 bp covered 12,375,160 Output type accessible chromatin region Genome build hg38 cell type PC-9 Biosample type Cell line Biosamples term id EFO:0002847 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,030,139 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0988_accessible_chromatin_regions_hg38.bed.gz Processed file md5 be1c49727ca3213dee1a89e2b730b74c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0988_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0988_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0988.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0988.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e8c0a12b667511d74508b3a95783a195 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0988;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=31905;Length=12420.897 kb;GEO_SRA=SRR5800668;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Respiratory life stage Unknown trackName ATACdb_v1.03 PC-9 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADBSP6ENM2KA Download track View in genome browser ATACdb_v1.03 Follicular T helper ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADBSP6ENM2KA Data Source ATACdb_v1.03 Download track Download Number of intervals 126,877 bp covered 1,700,978 Output type transcription factor binding sites Genome build hg38 cell type Follicular T helper Biosample type Not applicable Biosamples term id CL:0002038 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,026,894 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0261_hg38_motif_binding_sites.bed.gz Processed file md5 6215634194faad54d7652cae651ff4b7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0261_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0261_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0261;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Follicular_T_Helper;Cancer_Type=Normal;Region_Number=25336;Length=13525.178 kb;GEO_SRA=SRR7650792;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Follicular T helper ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]