NGADBRJH7E2SSL Download track ATACdb_v1.03 Putamen ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRJH7E2SSL Data Source ATACdb_v1.03 Download track Download Number of intervals 27,776 bp covered 10,712,723 Output type accessible chromatin region Genome build hg38 cell type Putamen Biosample type Not applicable Biosamples term id UBERON:0001874 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 899,977 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0473_accessible_chromatin_regions_hg38.bed.gz Processed file md5 90cc017c777e8327c5c5ae6eeeba4afe wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0473_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0473_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0473.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0473.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8389d80a5a2ce6a06fe1ec3325deb5b3 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0473;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=putamen;Cancer_Type=Other;Region_Number=27790;Length=10717.422 kb;GEO_SRA=SRR5367740;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledg system category Nervous life stage Unknown trackName ATACdb_v1.03 Putamen ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRJLQRK5SF Download track ATACdb_v1.03 CEM/C1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRJLQRK5SF Data Source ATACdb_v1.03 Download track Download Number of intervals 3,540 bp covered 1,640,126 Output type accessible chromatin region Genome build hg38 cell type CEM/C1 Biosample type Cell line Biosamples term id EFO:0001667 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 112,343 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1096_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c155b35f97bc652a8397f8aae7f82011 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1096_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1096_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1096.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1096.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0de167d1e120ca8fc20ec8ef096dd740 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1096;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CEM;Cancer_Type=Leukemia;Region_Number=3577;Length=1649.758 kb;GEO_SRA=SRR5123141;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CEM/C1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRKIDIWNN5 Download track ATACdb_v1.03 CD8+ naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRKIDIWNN5 Data Source ATACdb_v1.03 Download track Download Number of intervals 38,593 bp covered 24,505,361 Output type accessible chromatin region Genome build hg38 cell type CD8+ naive T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,309,208 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0295_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a367038f33e0cb6396ec3c9d8be06702 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0295_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0295_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0295.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0295.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 149d30ca57b4e134ece491f68a96c70c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0295;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_CD8_T;Cancer_Type=Normal;Region_Number=38697;Length=24576.669 kb;GEO_SRA=SRR7650826;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRKYAAZU6H Download track ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRKYAAZU6H Data Source ATACdb_v1.03 Download track Download Number of intervals 65,323 bp covered 882,427 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0022352 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,281,055 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0503_hg38_motif_binding_sites.bed.gz Processed file md5 1b677e4fba14d1dbbc43384ede6dda4c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0503_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0503_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0503;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=29850;Length=9127.929 kb;GEO_SRA=SRR5367773;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRL36OWKWA Download track ATACdb_v1.03 PC-9 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRL36OWKWA Data Source ATACdb_v1.03 Download track Download Number of intervals 101,095 bp covered 1,356,737 Output type transcription factor binding sites Genome build hg38 cell type PC-9 Biosample type Cell line Biosamples term id EFO:0002847 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,533,594 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0986_hg38_motif_binding_sites.bed.gz Processed file md5 fb8c1ac4a1cf623045f0a58b8e62855f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0986_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0986_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0986;Biosample_Type=Cell Line;Tissue_Type=Lung;Biosample_Name=PC-9;Cancer_Type=Lung cancer;Region_Number=33301;Length=13019.459 kb;GEO_SRA=SRR5800666;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Respiratory life stage Unknown trackName ATACdb_v1.03 PC-9 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRLFI7MOPL Download track ATACdb_v1.03 HCT116 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRLFI7MOPL Data Source ATACdb_v1.03 Download track Download Number of intervals 28,674 bp covered 12,045,634 Output type accessible chromatin region Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 938,161 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0878_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c9b05f41d73cd2b4f468736340d6362d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0878_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0878_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0878.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0878.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 da92e3b8eb4cfd9c839d2e216092e3b4 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0878;Biosample_Type=Cell Line;Tissue_Type=Colon;Biosample_Name=HCT116;Cancer_Type=Colorectal carcinoma;Region_Number=28723;Length=12069.714 kb;GEO_SRA=SRR5876161;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Digestive life stage Unknown trackName ATACdb_v1.03 HCT116 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRLGPHMODO Download track ATACdb_v1.03 Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBRLGPHMODO Data Source ATACdb_v1.03 Download track Download Number of intervals 367 bp covered 137,286 Output type accessible chromatin region Genome build hg38 cell type Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 11,755 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0648_accessible_chromatin_regions_hg38.bed.gz Processed file md5 466ed15565887b90562f008b0db83a5a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0648_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0648_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0648.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0648.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7e5f616bc0347273719b8abd27e89d44 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0648;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media;Cancer_Type=Normal;Region_Number=368;Length=138.086 kb;GEO_SRA=SRR5815124;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;d system category Embryo life stage Embryonic trackName ATACdb_v1.03 Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBRLINI4FHR Download track ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRLINI4FHR Data Source ATACdb_v1.03 Download track Download Number of intervals 54,796 bp covered 23,420,118 Output type accessible chromatin region Genome build hg38 cell type HAEC Biosample type Not applicable Biosamples term id EFO:0022506 Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,765,757 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0106_accessible_chromatin_regions_hg38.bed.gz Processed file md5 17ede3684f3fdc967f11ce667bafaaea wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0106_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0106_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0106.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0106.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 96d2468f587ca0d68f796852b193b20f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0106;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=HAEC;Cancer_Type=Coronary artery disease;Region_Number=54883;Length=23435.285 kb;GEO_SRA=SRR6898227;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAEC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRM4LAH6A4 Download track ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRM4LAH6A4 Data Source ATACdb_v1.03 Download track Download Number of intervals 29,842 bp covered 9,124,709 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0022352 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 934,266 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0503_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e082a08def7380105f2a44dc305c08a9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0503_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0503_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0503.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0503.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7e84f6e0ada7b3a921105cf10e11e209 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0503;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=29850;Length=9127.929 kb;GEO_SRA=SRR5367773;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GAD system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRMUIE6OL6 Download track ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRMUIE6OL6 Data Source ATACdb_v1.03 Download track Download Number of intervals 263,602 bp covered 3,606,036 Output type transcription factor binding sites Genome build hg38 cell type Nucleus accumbens Biosample type Tissue Biosamples term id UBERON:0001882 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,742,931 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0040_hg38_motif_binding_sites.bed.gz Processed file md5 2cf0cf3b4b8ce195ef834b66d9a6defb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0040_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0040_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0040;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Normal;Region_Number=72187;Length=40569.932 kb;GEO_SRA=SRR5343857;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Nucleus accumbens ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRN27P7JG7 Download track ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRN27P7JG7 Data Source ATACdb_v1.03 Download track Download Number of intervals 51,105 bp covered 24,879,941 Output type accessible chromatin region Genome build hg38 cell type hIPS Biosample type Stem cell Biosamples term id Not available Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,628,032 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0120_accessible_chromatin_regions_hg38.bed.gz Processed file md5 871a49f53c7995d550ecb471bc859323 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0120_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0120_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0120.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0120.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 486140795c1d4e6ba085c5d76f3ff271 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0120;Biosample_Type=Stem Cell;Tissue_Type=Adipose;Biosample_Name=ASCs;Cancer_Type=Normal;Region_Number=51148;Length=24906.168 kb;GEO_SRA=SRR6181361;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRNCJLTV2M Download track ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRNCJLTV2M Data Source ATACdb_v1.03 Download track Download Number of intervals 61,243 bp covered 30,728,873 Output type accessible chromatin region Genome build hg38 cell type hIPS Biosample type Stem cell Biosamples term id Not available Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,962,420 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0125_accessible_chromatin_regions_hg38.bed.gz Processed file md5 38b0b765ae05f8c3d59f59ae676736cb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0125_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0125_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0125.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0125.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7d26b93495c0f7b0adced105f8845ba5 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0125;Biosample_Type=Stem Cell;Tissue_Type=Adipose;Biosample_Name=ASCs;Cancer_Type=Normal;Region_Number=61294;Length=30756.958 kb;GEO_SRA=SRR6181366;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 hIPS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRNL4FDS3X Download track ATACdb_v1.03 UNK ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRNL4FDS3X Data Source ATACdb_v1.03 Download track Download Number of intervals 210,894 bp covered 2,854,409 Output type transcription factor binding sites Genome build hg38 cell type UNK Biosample type Primary cell Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,106,105 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0619_hg38_motif_binding_sites.bed.gz Processed file md5 196660c3f8c184931881eee7d351a2c0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0619_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0619_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0619;Biosample_Type=Primary Cell;Tissue_Type=Bone marrow;Biosample_Name=UNK;Cancer_Type=Normal;Region_Number=57180;Length=27151.664 kb;GEO_SRA=SRR5356157;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Skeletal life stage Unknown trackName ATACdb_v1.03 UNK ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBROCIPK5GS Download track ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBROCIPK5GS Data Source ATACdb_v1.03 Download track Download Number of intervals 156,172 bp covered 2,081,027 Output type transcription factor binding sites Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,707,549 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0058_hg38_motif_binding_sites.bed.gz Processed file md5 14f4ca4091e6695de6658b52f8e0f423 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0058_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0058_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0058;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=22601;Length=15833.275 kb;GEO_SRA=SRR5417022;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBROJIH53TV Download track ATACdb_v1.03 UNK ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBROJIH53TV Data Source ATACdb_v1.03 Download track Download Number of intervals 171,284 bp covered 2,312,207 Output type transcription factor binding sites Genome build hg38 cell type UNK Biosample type Primary cell Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,872,553 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0623_hg38_motif_binding_sites.bed.gz Processed file md5 29b7d8d3e64d4cb9b274e52115b24124 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0623_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0623_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0623;Biosample_Type=Primary Cell;Tissue_Type=Bone marrow;Biosample_Name=UNK;Cancer_Type=Normal;Region_Number=49820;Length=22184.221 kb;GEO_SRA=SRR5356161;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Skeletal life stage Unknown trackName ATACdb_v1.03 UNK ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRPBVFIY5B Download track ATACdb_v1.03 Monocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRPBVFIY5B Data Source ATACdb_v1.03 Download track Download Number of intervals 192,165 bp covered 2,608,906 Output type transcription factor binding sites Genome build hg38 cell type Monocyte Biosample type Not applicable Biosamples term id CL:0000576 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,248,409 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0237_hg38_motif_binding_sites.bed.gz Processed file md5 65cbbcdff2495caba4d2b2a753031905 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0237_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0237_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0237;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Monocytes;Cancer_Type=Normal;Region_Number=43361;Length=23562.229 kb;GEO_SRA=SRR7650767;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Monocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRPNA3MWGQ Download track ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRPNA3MWGQ Data Source ATACdb_v1.03 Download track Download Number of intervals 10,132 bp covered 4,408,886 Output type accessible chromatin region Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 334,000 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1036_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6e1f75c23af0be566fc9f31b0dc212b4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1036_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1036_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1036.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1036.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 aa1f941b138bfcc62bc33c161d1d71ba Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1036;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=10169;Length=4431.619 kb;GEO_SRA=SRR5128073;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRPPDE3MTE Download track ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRPPDE3MTE Data Source ATACdb_v1.03 Download track Download Number of intervals 26,045 bp covered 15,369,017 Output type accessible chromatin region Genome build hg38 cell type Chronic lymphocytic leukemia Biosample type Cell line Biosamples term id NCIT:C3163 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 871,292 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0095_accessible_chromatin_regions_hg38.bed.gz Processed file md5 02cc5a73aae7eb3a79210a9475a83d17 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0095_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0095_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0095.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0095.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 90f4d85c39d1bbc310686e93ad5f988c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0095;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CLL;Cancer_Type=Leukemia;Region_Number=26085;Length=15387.025 kb;GEO_SRA=SRR7815325;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Chronic lymphocytic leukemia ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRPYKHC7MD Download track ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRPYKHC7MD Data Source ATACdb_v1.03 Download track Download Number of intervals 13,158 bp covered 5,387,791 Output type accessible chromatin region Genome build hg38 cell type CD8+ T cell Biosample type Cell line Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 430,083 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0854_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6b0fceb9963fc05586e177b27d27ec3f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0854_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0854_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0854.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0854.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a79adfc79aaa84834c4666725c33311e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0854;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=T_T;Cancer_Type=The Yellow fever;Region_Number=13184;Length=5398.114 kb;GEO_SRA=SRR5839506;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRQDWNGUP4 Download track ATACdb_v1.03 Aska chCt ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRQDWNGUP4 Data Source ATACdb_v1.03 Download track Download Number of intervals 13,368 bp covered 7,244,867 Output type accessible chromatin region Genome build hg38 cell type Aska chCt Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 441,217 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0567_accessible_chromatin_regions_hg38.bed.gz Processed file md5 4be1d15e5642ff623d60033a9489c786 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0567_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0567_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0567.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0567.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 df57c17fb15aa64db6eb459f3faf0667 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0567;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Aska;Cancer_Type=Sarcoma;Region_Number=13409;Length=7240.05 kb;GEO_SRA=SRR7167355;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Skeletal life stage Unknown trackName ATACdb_v1.03 Aska chCt ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRQOVMFSFI Download track ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRQOVMFSFI Data Source ATACdb_v1.03 Download track Download Number of intervals 269,128 bp covered 3,674,984 Output type transcription factor binding sites Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 9,879,272 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0375_hg38_motif_binding_sites.bed.gz Processed file md5 d75b037efc324b4e3cdaaaaa6058e597 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0375_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0375_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0375;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=Fibroblast;Cancer_Type=Other;Region_Number=107900;Length=49468.146 kb;GEO_SRA=SRR5521294;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRR3CTYZI3 Download track ATACdb_v1.03 Aska chCt ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRR3CTYZI3 Data Source ATACdb_v1.03 Download track Download Number of intervals 85,246 bp covered 1,119,743 Output type transcription factor binding sites Genome build hg38 cell type Aska chCt Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,586,874 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0570_hg38_motif_binding_sites.bed.gz Processed file md5 c17b9035f40b41e6a7b61b93d54f4c50 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0570_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0570_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0570;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Aska;Cancer_Type=Sarcoma;Region_Number=14649;Length=7498.55 kb;GEO_SRA=SRR7167358;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Skeletal life stage Unknown trackName ATACdb_v1.03 Aska chCt ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRRMLJRAX5 Download track ATACdb_v1.03 HAP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRRMLJRAX5 Data Source ATACdb_v1.03 Download track Download Number of intervals 7,958 bp covered 112,462 Output type transcription factor binding sites Genome build hg38 cell type HAP-1 Biosample type Cell line Biosamples term id EFO:0007598 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 183,552 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0422_hg38_motif_binding_sites.bed.gz Processed file md5 28b426cf8795a4e96c394e322a7d5f93 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0422_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0422_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0422;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=HAP1;Cancer_Type=Leukemia;Region_Number=2859;Length=2236.307 kb;GEO_SRA=SRR6766920;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRRNBVCOHP Download track ATACdb_v1.03 Dorsolateral prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRRNBVCOHP Data Source ATACdb_v1.03 Download track Download Number of intervals 41,013 bp covered 543,576 Output type transcription factor binding sites Genome build hg38 cell type Dorsolateral prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0009834 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,302,922 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0517_hg38_motif_binding_sites.bed.gz Processed file md5 0ed0744ba5a53f0ff908f7c7b2b2ed40 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0517_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0517_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0517;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=dorsolateral prefrontal cortex;Cancer_Type=Other;Region_Number=15292;Length=3431.087 kb;GEO_SRA=SRR5367801;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Dorsolateral prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRRXNB7M2D Download track ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRRXNB7M2D Data Source ATACdb_v1.03 Download track Download Number of intervals 4,423 bp covered 1,335,110 Output type accessible chromatin region Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 137,156 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0830_accessible_chromatin_regions_hg38.bed.gz Processed file md5 b7b9c13188c0d6548100a0a9e4ed9031 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0830_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0830_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0830.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0830.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 c84795ba0c5628b7e8be32cc152dd2a5 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0830;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=4428;Length=1334.01 kb;GEO_SRA=SRR5839482;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRSDBK6ZP7 Download track ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRSDBK6ZP7 Data Source ATACdb_v1.03 Download track Download Number of intervals 34,847 bp covered 20,014,769 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0022352 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,160,784 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0454_accessible_chromatin_regions_hg38.bed.gz Processed file md5 59f8072c819ac848218836aa08f91b07 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0454_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0454_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0454.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0454.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1e963368c3b52172d2177f22fdf3319e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0454;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=34863;Length=20021.068 kb;GEO_SRA=SRR5367712;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRSECDYKL3 Download track ATACdb_v1.03 501-mel ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRSECDYKL3 Data Source ATACdb_v1.03 Download track Download Number of intervals 53,516 bp covered 25,270,418 Output type accessible chromatin region Genome build hg38 cell type 501-mel Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,706,041 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0857_accessible_chromatin_regions_hg38.bed.gz Processed file md5 259490ff57a175fc251f6f74cfe0feb1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0857_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0857_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0857.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0857.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e3cab74e4d06f8efcf65df12941d8742 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0857;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=501-Mel;Cancer_Type=Melanoma;Region_Number=53587;Length=25282.711 kb;GEO_SRA=SRR5228489;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Integumentary life stage Unknown trackName ATACdb_v1.03 501-mel ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRSWPFAPAJ Download track ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRSWPFAPAJ Data Source ATACdb_v1.03 Download track Download Number of intervals 143,230 bp covered 1,947,842 Output type transcription factor binding sites Genome build hg38 cell type Primary motor cortex Biosample type Not applicable Biosamples term id UBERON:0001384 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,185,662 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0512_hg38_motif_binding_sites.bed.gz Processed file md5 978c24fee8b87e37de46e1fa4e26a9a9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0512_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0512_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0512;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary motor cortex;Cancer_Type=Other;Region_Number=62818;Length=29187.058 kb;GEO_SRA=SRR5367795;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRSZXVW4C2 Download track ATACdb_v1.03 HAP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRSZXVW4C2 Data Source ATACdb_v1.03 Download track Download Number of intervals 5,231 bp covered 74,113 Output type transcription factor binding sites Genome build hg38 cell type HAP-1 Biosample type Cell line Biosamples term id EFO:0007598 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 122,977 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0420_hg38_motif_binding_sites.bed.gz Processed file md5 8db2416b3a2ad93f6282d99ca60f2ea8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0420_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0420_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0420;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=HAP1;Cancer_Type=Leukemia;Region_Number=1934;Length=1512.188 kb;GEO_SRA=SRR6766918;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRTFXYMUCI Download track ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRTFXYMUCI Data Source ATACdb_v1.03 Download track Download Number of intervals 55,906 bp covered 728,138 Output type transcription factor binding sites Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,601,261 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1039_hg38_motif_binding_sites.bed.gz Processed file md5 35eb74080151d10a4ac6682bb5790502 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1039_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1039_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1039;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=8137;Length=3637.456 kb;GEO_SRA=SRR5128076;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRTHBKYCVW Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRTHBKYCVW Data Source ATACdb_v1.03 Download track Download Number of intervals 706 bp covered 329,379 Output type accessible chromatin region Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 22,158 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1194_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7bb424f506588fd8171456bc21309cb8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1194_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1194_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1194.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1194.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 8a60ab6cb4ff12f9b5267c0486584bd0 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1194;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=PBMC;Cancer_Type=Normal;Region_Number=713;Length=331.746 kb;GEO_SRA=GSM1708261;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgem system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRTOW4WUCP Download track ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRTOW4WUCP Data Source ATACdb_v1.03 Download track Download Number of intervals 7,965 bp covered 3,280,340 Output type accessible chromatin region Genome build hg38 cell type HCASMC Biosample type Not applicable Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 260,636 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1197_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7a867fd47febfd77b567875db051d7a9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1197_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1197_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1197.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1197.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 dd350b0a4204b5073a80d9d91bf6af23 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1197;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=HCASMC;Cancer_Type=Hemoglobinopathies;Region_Number=7984;Length=3283.976 kb;GEO_SRA=GSM1939567;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRTTKI35C7 Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBRTTKI35C7 Data Source ATACdb_v1.03 Download track Download Number of intervals 228,585 bp covered 3,056,135 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,554,739 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0133_hg38_motif_binding_sites.bed.gz Processed file md5 e24f9c1a80ebc4fceb0e389d375af92e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0133_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0133_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0133;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=49216;Length=30400.164 kb;GEO_SRA=SRR7839291;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBRUQG3SPGZ Download track ATACdb_v1.03 BJ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRUQG3SPGZ Data Source ATACdb_v1.03 Download track Download Number of intervals 178,254 bp covered 2,414,687 Output type transcription factor binding sites Genome build hg38 cell type BJ Biosample type Cell line Biosamples term id EFO:0002779 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,215,499 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0723_hg38_motif_binding_sites.bed.gz Processed file md5 8cfbfdf51abe71a2960da3cd820960d8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0723_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0723_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0723;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=BJ-5ta;Cancer_Type=Normal;Region_Number=51786;Length=28370.01 kb;GEO_SRA=SRR6667570;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Integumentary life stage Unknown trackName ATACdb_v1.03 BJ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRUYG3J5C6 Download track ATACdb_v1.03 Cardiac myocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRUYG3J5C6 Data Source ATACdb_v1.03 Download track Download Number of intervals 335,366 bp covered 4,525,002 Output type transcription factor binding sites Genome build hg38 cell type Cardiac myocyte Biosample type Cell line Biosamples term id CL:0000746 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 11,050,827 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0381_hg38_motif_binding_sites.bed.gz Processed file md5 172609960c2ba3d4f2b83278f01ea362 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0381_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0381_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0381;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=C15;Cancer_Type=Normal;Region_Number=75545;Length=44237.83 kb;GEO_SRA=SRR4045889;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledg system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Cardiac myocyte ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRUZQQHM4G Download track ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRUZQQHM4G Data Source ATACdb_v1.03 Download track Download Number of intervals 64,465 bp covered 867,534 Output type transcription factor binding sites Genome build hg38 cell type Temporal cortex Biosample type Not applicable Biosamples term id UBERON:0016538 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,265,681 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0486_hg38_motif_binding_sites.bed.gz Processed file md5 c35810c44c2776c4908b0ed6852e2667 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0486_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0486_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0486;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=26327;Length=10046.106 kb;GEO_SRA=SRR5367753;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab system category Nervous life stage Unknown trackName ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRV3YLGOH6 Download track ATACdb_v1.03 FT190 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRV3YLGOH6 Data Source ATACdb_v1.03 Download track Download Number of intervals 31,594 bp covered 18,580,146 Output type accessible chromatin region Genome build hg38 cell type FT190 Biosample type Cell line Biosamples term id Not available Tissue category Female Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,036,861 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1363_accessible_chromatin_regions_hg38.bed.gz Processed file md5 92de4192ca5d616bee560b5b811de075 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1363_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1363_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1363.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1363.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 04e8bea3afbba3130143fb485e78e563 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1363;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=FT190;Cancer_Type=Ovarion cancer;Region_Number=31633;Length=18593.165 kb;GEO_SRA=GSM3462380;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Reproductive life stage Unknown trackName ATACdb_v1.03 FT190 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRW3YKYM2N Download track ATACdb_v1.03 MUG-Chor1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRW3YKYM2N Data Source ATACdb_v1.03 Download track Download Number of intervals 49,477 bp covered 662,816 Output type transcription factor binding sites Genome build hg38 cell type MUG-Chor1 Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,653,968 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1448_hg38_motif_binding_sites.bed.gz Processed file md5 3af3fef40f4beecfe896d262a4333eae wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1448_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1448_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1448;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=MUG-Chor1;Cancer_Type=Chordoma;Region_Number=15288;Length=5904.515 kb;GEO_SRA=SRR6635719;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ack system category Skeletal life stage Unknown trackName ATACdb_v1.03 MUG-Chor1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRW4NZJW2K Download track ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRW4NZJW2K Data Source ATACdb_v1.03 Download track Download Number of intervals 153,661 bp covered 2,063,311 Output type transcription factor binding sites Genome build hg38 cell type HCASMC Biosample type Tissue Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,973,257 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1164_hg38_motif_binding_sites.bed.gz Processed file md5 4b4691a7e252613b93eed1c20e946520 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1164_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1164_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1164;Biosample_Type=Tissue;Tissue_Type=Artery;Biosample_Name=HCASMC;Cancer_Type=Normal;Region_Number=32619;Length=19133.604 kb;GEO_SRA=SRR2378591;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRWDK7XGJJ Download track ATACdb_v1.03 Pancreatic islets ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRWDK7XGJJ Data Source ATACdb_v1.03 Download track Download Number of intervals 22,574 bp covered 11,113,278 Output type accessible chromatin region Genome build hg38 cell type Pancreatic islets Biosample type Tissue Biosamples term id UBERON:0000006 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 716,304 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1215_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6583adcfce935aaeb34e16afaf445115 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1215_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1215_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1215.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1215.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7e0404de688be4c9e4f6b27008fc9297 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1215;Biosample_Type=Tissue;Tissue_Type=Pancreas;Biosample_Name=Pancreatic islet;Cancer_Type=Normal;Region_Number=22681;Length=11192.528 kb;GEO_SRA=GSM1978249;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Digestive life stage Unknown trackName ATACdb_v1.03 Pancreatic islets ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRWI4R5BWB Download track ATACdb_v1.03 G-13063 Glioblastoma derived cell line ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRWI4R5BWB Data Source ATACdb_v1.03 Download track Download Number of intervals 73,577 bp covered 1,020,880 Output type transcription factor binding sites Genome build hg38 cell type G-13063 Glioblastoma derived cell line Biosample type Cell line Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,831,531 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0432_hg38_motif_binding_sites.bed.gz Processed file md5 91ed8803c8deed4cf1d7c70f807f6095 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0432_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0432_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0432;Biosample_Type=Cell Line;Tissue_Type=Glioblastoma;Biosample_Name=G-13063;Cancer_Type=Glioblastoma;Region_Number=28954;Length=33670.746 kb;GEO_SRA=GSM3307242;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Nervous life stage Unknown trackName ATACdb_v1.03 G-13063 Glioblastoma derived cell line ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRWVPNV4BZ Download track ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRWVPNV4BZ Data Source ATACdb_v1.03 Download track Download Number of intervals 52,660 bp covered 697,769 Output type transcription factor binding sites Genome build hg38 cell type T-helper 17 cell Biosample type Primary cell Biosamples term id CL:0000899 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,602,192 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0914_hg38_motif_binding_sites.bed.gz Processed file md5 51a5ac638c42c36880913f0167fb46ec wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0914_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0914_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0914;Biosample_Type=Primary Cell;Tissue_Type=Cytokine-secreting T helper cell (Th) counterparts;Biosample_Name=Th17;Cancer_Type=Other;Region_Number=11175;Length=4262.779 kb;GEO_SRA=SRR5831524;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=ht system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRWWEQIEUJ Download track ATACdb_v1.03 CD8+ effector memory T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRWWEQIEUJ Data Source ATACdb_v1.03 Download track Download Number of intervals 56,514 bp covered 22,567,882 Output type accessible chromatin region Genome build hg38 cell type CD8+ effector memory T cell Biosample type Not applicable Biosamples term id CL:0000913 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,876,554 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0292_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6abfa6905082cc596841c2009c9acdad wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0292_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0292_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0292.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0292.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 9b3eb233a7d2629ab14e1a0827376bff Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0292;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Effector_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=56601;Length=22612.215 kb;GEO_SRA=SRR7650823;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ effector memory T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRXATPVECD Download track ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRXATPVECD Data Source ATACdb_v1.03 Download track Download Number of intervals 86,602 bp covered 45,638,793 Output type accessible chromatin region Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,786,844 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0688_accessible_chromatin_regions_hg38.bed.gz Processed file md5 b8d5f4c3f2180b600497aa9094ab3ec5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0688_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0688_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0688.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0688.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 af8275f77c264ee43e275f55b1682504 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0688;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=86685;Length=45685.305 kb;GEO_SRA=GSM2688938;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRXBEHZ3RJ Download track ATACdb_v1.03 Insula ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRXBEHZ3RJ Data Source ATACdb_v1.03 Download track Download Number of intervals 38,870 bp covered 11,316,867 Output type accessible chromatin region Genome build hg38 cell type Insula Biosample type Not applicable Biosamples term id UBERON:0002022 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,225,702 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0459_accessible_chromatin_regions_hg38.bed.gz Processed file md5 00fde12150f4225eceac87de98c2048f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0459_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0459_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0459.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0459.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 2f8ee8e3907e1f5597972d2637252f8d Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0459;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=insula;Cancer_Type=Other;Region_Number=38876;Length=11317.473 kb;GEO_SRA=SRR5367721;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Nervous life stage Unknown trackName ATACdb_v1.03 Insula ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBRXGMZWDPT Download track ATACdb_v1.03 LNCaP 95 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRXGMZWDPT Data Source ATACdb_v1.03 Download track Download Number of intervals 356,043 bp covered 4,904,316 Output type transcription factor binding sites Genome build hg38 cell type LNCaP 95 Biosample type Cell line Biosamples term id Not available Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 12,291,036 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0573_hg38_motif_binding_sites.bed.gz Processed file md5 a7e63bf1bf6a01ace77732627adb3245 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0573_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0573_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0573;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=LN95;Cancer_Type=Prostate cancer;Region_Number=69354;Length=74749.442 kb;GEO_SRA=SRR6933116;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Reproductive life stage Unknown trackName ATACdb_v1.03 LNCaP 95 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRXS5XNKJ7 Download track ATACdb_v1.03 Epithelium ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRXS5XNKJ7 Data Source ATACdb_v1.03 Download track Download Number of intervals 4,468 bp covered 58,873 Output type transcription factor binding sites Genome build hg38 cell type Epithelium Biosample type Primary cell Biosamples term id NCIT:C12710 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 158,158 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0858_hg38_motif_binding_sites.bed.gz Processed file md5 12722194973d47036bb0c28164b2e125 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0858_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0858_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0858;Biosample_Type=Primary Cell;Tissue_Type=Bronchial;Biosample_Name=AAEC;Cancer_Type=Asthma;Region_Number=1713;Length=589.171 kb;GEO_SRA=SRR6290071;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Respiratory life stage Unknown trackName ATACdb_v1.03 Epithelium ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRXWHDUG43 Download track ATACdb_v1.03 8 blastocysts ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBRXWHDUG43 Data Source ATACdb_v1.03 Download track Download Number of intervals 75,936 bp covered 56,127,363 Output type accessible chromatin region Genome build hg38 cell type 8 blastocysts Biosample type Stem cell Biosamples term id UBERON:0000358 Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,487,338 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0640_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f4acda6f6dd91023442d7a2a1702cd87 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0640_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0640_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0640.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0640.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 dfda5feaeabdcf3b4ce50777d63c3b10 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0640;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Eight day;Cancer_Type=Normal;Region_Number=76041;Length=56181.117 kb;GEO_SRA=SRR5815116;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Embryo life stage Embryonic trackName ATACdb_v1.03 8 blastocysts ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBRXYHCYRJJ Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRXYHCYRJJ Data Source ATACdb_v1.03 Download track Download Number of intervals 149,245 bp covered 2,007,403 Output type transcription factor binding sites Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,726,359 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1425_hg38_motif_binding_sites.bed.gz Processed file md5 5b2915928794a08c7e2be6b2c5ec2a63 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1425_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1425_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1425;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=26980;Length=15446.048 kb;GEO_SRA=SRR5785382;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBRY5WCYYYL Download track ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBRY5WCYYYL Data Source ATACdb_v1.03 Download track Download Number of intervals 42,760 bp covered 22,298,345 Output type accessible chromatin region Genome build hg38 cell type Macrophage Biosample type Primary cell Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,431,940 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1028_accessible_chromatin_regions_hg38.bed.gz Processed file md5 856837b58e61a43e57f1688c0c96e046 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1028_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1028_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1028.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1028.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ec9299c484882f4936d552ef8f012abc Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1028;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=Macrophage;Cancer_Type=Normal;Region_Number=42823;Length=22302.386 kb;GEO_SRA=SRR4450163;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]