NGADBO75BMSYJG Download track ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBO75BMSYJG Data Source ATACdb_v1.03 Download track Download Number of intervals 23,292 bp covered 8,684,468 Output type accessible chromatin region Genome build hg38 cell type EBV-transformed lymphocytes Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0022546 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 768,821 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0748_accessible_chromatin_regions_hg38.bed.gz Processed file md5 0ff22c9372d9804bd5478f99142b11f7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0748_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0748_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0748.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0748.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1ade8f7daa3009f36e0799c33ff5cf93 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0748;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=23342;Length=8705.129 kb;GEO_SRA=SRR6412826;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBO76XB6WRC Download track ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBO76XB6WRC Data Source ATACdb_v1.03 Download track Download Number of intervals 22,468 bp covered 14,773,590 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 750,362 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0085_accessible_chromatin_regions_hg38.bed.gz Processed file md5 4981923c4bcab358116a9c07812a792c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0085_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0085_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0085.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0085.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e83ea60db0db61dd99bcee851b6b72e3 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0085;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=22521;Length=14801.347 kb;GEO_SRA=SRR5417049;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBO7VJBRQ6R Download track ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBO7VJBRQ6R Data Source ATACdb_v1.03 Download track Download Number of intervals 105,912 bp covered 1,406,368 Output type transcription factor binding sites Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,362,403 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0560_hg38_motif_binding_sites.bed.gz Processed file md5 319763e58a29938023e55e6041fbc72a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0560_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0560_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0560;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=MCF7;Cancer_Type=Breast cancer;Region_Number=24707;Length=10036.361 kb;GEO_SRA=SRR5442275;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 MCF-7 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBO7Z4JKJFI Download track ATACdb_v1.03 hIPS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBO7Z4JKJFI Data Source ATACdb_v1.03 Download track Download Number of intervals 219,593 bp covered 2,973,079 Output type transcription factor binding sites Genome build hg38 cell type hIPS Biosample type Stem cell Biosamples term id Not available Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,837,131 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0119_hg38_motif_binding_sites.bed.gz Processed file md5 02861402ba80b9ee8c2039a58f2afb34 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0119_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0119_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0119;Biosample_Type=Stem Cell;Tissue_Type=Adipose;Biosample_Name=ASCs;Cancer_Type=Normal;Region_Number=81066;Length=36231.452 kb;GEO_SRA=SRR6181360;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 hIPS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOB7LJFD45 Download track ATACdb_v1.03 T98G ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOB7LJFD45 Data Source ATACdb_v1.03 Download track Download Number of intervals 16,664 bp covered 11,201,139 Output type accessible chromatin region Genome build hg38 cell type T98G Biosample type Cell line Biosamples term id EFO:0002085 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 557,892 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0370_accessible_chromatin_regions_hg38.bed.gz Processed file md5 46a8ccb40a0f27e4fde9a7d34e02741e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0370_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0370_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0370.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0370.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 6fc8e706b3ec6b8f3d9fab096255f555 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0370;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=T98G;Cancer_Type=Glioblastoma;Region_Number=16719;Length=11218.265 kb;GEO_SRA=SRR6251847;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Nervous life stage Unknown trackName ATACdb_v1.03 T98G ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOBHCAATRN Download track ATACdb_v1.03 CM CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOBHCAATRN Data Source ATACdb_v1.03 Download track Download Number of intervals 48,938 bp covered 26,925,560 Output type accessible chromatin region Genome build hg38 cell type CM CD8+ T cell Biosample type Not applicable Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,646,892 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0208_accessible_chromatin_regions_hg38.bed.gz Processed file md5 b97d62d1ac58a3d4c4ac1dec44d97733 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0208_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0208_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0208.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0208.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b78afc4e97971e0a7441e689d5cba3f7 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0208;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Central_memory_CD8pos_T;Cancer_Type=Normal;Region_Number=49046;Length=27006.17 kb;GEO_SRA=SRR7650738;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CM CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOBHMCFTIR Download track ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOBHMCFTIR Data Source ATACdb_v1.03 Download track Download Number of intervals 103,038 bp covered 1,355,146 Output type transcription factor binding sites Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,057,168 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0087_hg38_motif_binding_sites.bed.gz Processed file md5 3df2e6544e0c54d34629f5ee51dd8cef wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0087_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0087_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0087;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=14780;Length=8526.315 kb;GEO_SRA=SRR5417051;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOC7WQL2XM Download track ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOC7WQL2XM Data Source ATACdb_v1.03 Download track Download Number of intervals 109,500 bp covered 1,471,718 Output type transcription factor binding sites Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,603,988 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0929_hg38_motif_binding_sites.bed.gz Processed file md5 5d49aa24d6205617732afa454ab7ab2e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0929_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0929_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0929;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=28796;Length=9604.945 kb;GEO_SRA=SRR5809236;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOCFLNGYDA Download track ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBOCFLNGYDA Data Source ATACdb_v1.03 Download track Download Number of intervals 342,959 bp covered 4,652,284 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id EFO:0009320 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 11,321,691 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0738_hg38_motif_binding_sites.bed.gz Processed file md5 7fcf78a25ffb90bf288673f1a5d71fee wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0738_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0738_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0738;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=RUES2;Cancer_Type=Normal;Region_Number=97848;Length=43232.132 kb;GEO_SRA=SRR6269272;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBOCKELR6OF Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOCKELR6OF Data Source ATACdb_v1.03 Download track Download Number of intervals 166,175 bp covered 2,242,827 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,327,561 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0781_hg38_motif_binding_sites.bed.gz Processed file md5 929b070eff7361c433b3f5f0c5d974f3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0781_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0781_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0781;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19206;Cancer_Type=Other;Region_Number=38959;Length=22723.567 kb;GEO_SRA=SRR6412415;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOCLRD6ATC Download track ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOCLRD6ATC Data Source ATACdb_v1.03 Download track Download Number of intervals 33,276 bp covered 17,836,544 Output type accessible chromatin region Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,081,546 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0101_accessible_chromatin_regions_hg38.bed.gz Processed file md5 282646f0eeddf1bc7df7542dcdcb6de3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0101_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0101_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0101.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0101.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5f773d3f2318794b4a726cd1ceafea85 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0101;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K562;Cancer_Type=Leukemia;Region_Number=33318;Length=17827.135 kb;GEO_SRA=SRR6418082;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOCXCO3M47 Download track ATACdb_v1.03 CD8+ naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOCXCO3M47 Data Source ATACdb_v1.03 Download track Download Number of intervals 24,827 bp covered 13,185,451 Output type accessible chromatin region Genome build hg38 cell type CD8+ naive T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 840,469 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0327_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a5102d863354d3bb74a19593de176ee7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0327_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0327_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0327.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0327.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 6569a9f43ee13773e48c004fcc657260 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0327;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Naive_CD8_T;Cancer_Type=Normal;Region_Number=24925;Length=13247.128 kb;GEO_SRA=SRR7650859;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBODOLZQ6C3 Download track ATACdb_v1.03 WM989 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBODOLZQ6C3 Data Source ATACdb_v1.03 Download track Download Number of intervals 48,748 bp covered 18,056,115 Output type accessible chromatin region Genome build hg38 cell type WM989 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,543,847 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1053_accessible_chromatin_regions_hg38.bed.gz Processed file md5 fb7a2ffbe2db7bc32de54fd5140e0a4f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1053_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1053_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1053.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1053.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 db59d7c6143db92b10df66c0ce6fac85 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1053;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=48799;Length=18076.462 kb;GEO_SRA=SRR5444785;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 WM989 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBODP5FMVWI Download track ATACdb_v1.03 THP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBODP5FMVWI Data Source ATACdb_v1.03 Download track Download Number of intervals 221,861 bp covered 3,073,843 Output type transcription factor binding sites Genome build hg38 cell type THP-1 Biosample type Cell line Biosamples term id EFO:0001253 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,160,944 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1071_hg38_motif_binding_sites.bed.gz Processed file md5 7a399250c0bc4f84c0bcb59e01135d27 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1071_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1071_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1071;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=THP-1;Cancer_Type=Other;Region_Number=72360;Length=37071.537 kb;GEO_SRA=SRR5359594;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 THP-1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBODVTQMOQQ Download track ATACdb_v1.03 Pancreatic islets ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBODVTQMOQQ Data Source ATACdb_v1.03 Download track Download Number of intervals 145,829 bp covered 1,945,269 Output type transcription factor binding sites Genome build hg38 cell type Pancreatic islets Biosample type Tissue Biosamples term id UBERON:0000006 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,874,147 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1216_hg38_motif_binding_sites.bed.gz Processed file md5 1438c9e5dd2ce1dcab8149869c8c23de wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1216_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1216_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1216;Biosample_Type=Tissue;Tissue_Type=Pancreas;Biosample_Name=Pancreatic islet;Cancer_Type=Normal;Region_Number=37296;Length=18647.889 kb;GEO_SRA=GSM1978250;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FIL system category Digestive life stage Unknown trackName ATACdb_v1.03 Pancreatic islets ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBODXSJTNTN Download track ATACdb_v1.03 Insula ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBODXSJTNTN Data Source ATACdb_v1.03 Download track Download Number of intervals 170,224 bp covered 2,314,546 Output type transcription factor binding sites Genome build hg38 cell type Insula Biosample type Not applicable Biosamples term id UBERON:0002022 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,116,214 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0479_hg38_motif_binding_sites.bed.gz Processed file md5 f6d43b9d928e109c7cb3be74f5d7f9e7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0479_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0479_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0479;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=insula;Cancer_Type=Other;Region_Number=70417;Length=31978.601 kb;GEO_SRA=SRR5367746;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledge system category Nervous life stage Unknown trackName ATACdb_v1.03 Insula ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOEBYANDN7 Download track ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOEBYANDN7 Data Source ATACdb_v1.03 Download track Download Number of intervals 242,809 bp covered 3,309,468 Output type transcription factor binding sites Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,814,717 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0687_hg38_motif_binding_sites.bed.gz Processed file md5 1cfe972d8fec87a488e248c82b430db9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0687_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0687_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0687;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=82409;Length=47846.986 kb;GEO_SRA=GSM2688937;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOEIASYJXN Download track ATACdb_v1.03 HUDEP ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOEIASYJXN Data Source ATACdb_v1.03 Download track Download Number of intervals 35,424 bp covered 467,529 Output type transcription factor binding sites Genome build hg38 cell type HUDEP Biosample type Not applicable Biosamples term id EFO:0022838 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,100,106 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1201_hg38_motif_binding_sites.bed.gz Processed file md5 62c67ba80d7ae03db00500bc0a0c7e74 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1201_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1201_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1201;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=HUDEP-2;Cancer_Type=Hemoglobinopathies;Region_Number=7872;Length=3156.321 kb;GEO_SRA=GSM1939571;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HUDEP ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOEYFLOKA3 Download track ATACdb_v1.03 CD4+ effector memory T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOEYFLOKA3 Data Source ATACdb_v1.03 Download track Download Number of intervals 184,250 bp covered 2,482,362 Output type transcription factor binding sites Genome build hg38 cell type CD4+ effector memory T cell Biosample type Not applicable Biosamples term id CL:0000905 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,018,174 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0299_hg38_motif_binding_sites.bed.gz Processed file md5 7f7bf3f1e645bee9306c3cd9afd7c693 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0299_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0299_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0299;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Effector_CD4pos_T;Cancer_Type=Normal;Region_Number=36012;Length=22769.648 kb;GEO_SRA=SRR7650830;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ effector memory T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOEZ3HASXL Download track ATACdb_v1.03 hPGCLCs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBOEZ3HASXL Data Source ATACdb_v1.03 Download track Download Number of intervals 54,260 bp covered 35,517,908 Output type accessible chromatin region Genome build hg38 cell type hPGCLCs Biosample type Stem cell Biosamples term id Not available Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,768,807 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0011_accessible_chromatin_regions_hg38.bed.gz Processed file md5 d18d3229b1a116111aaaf9276bda7a80 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0011_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0011_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0011.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0011.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0a496f1f4b1d1b2210e8dd28569b93ed Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0011;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=hPGCLCs induced from primed UCLA1 hESCs;Cancer_Type=Normal;Region_Number=54344;Length=35559.053 kb;GEO_SRA=SRR7942732;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.l system category Embryo life stage Embryonic trackName ATACdb_v1.03 hPGCLCs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBOFEMZKIMS Download track ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOFEMZKIMS Data Source ATACdb_v1.03 Download track Download Number of intervals 46,848 bp covered 628,039 Output type transcription factor binding sites Genome build hg38 cell type Primary visual cortex Biosample type Not applicable Biosamples term id UBERON:0002436 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,637,106 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0513_hg38_motif_binding_sites.bed.gz Processed file md5 e161b7d79692dee1ef7eff89fe438675 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0513_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0513_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0513;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=20579;Length=7674.064 kb;GEO_SRA=SRR5367796;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOFNJ2BAYQ Download track ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOFNJ2BAYQ Data Source ATACdb_v1.03 Download track Download Number of intervals 15,892 bp covered 213,207 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 502,255 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1298_hg38_motif_binding_sites.bed.gz Processed file md5 1e4ceecda6e16f846df9bf527f3adef8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1298_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1298_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1298;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=4481;Length=1558.689 kb;GEO_SRA=SRR1556377;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOG3WUM3JF Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOG3WUM3JF Data Source ATACdb_v1.03 Download track Download Number of intervals 74,120 bp covered 46,857,072 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,348,394 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0805_accessible_chromatin_regions_hg38.bed.gz Processed file md5 65538e2ee7b09353ab750dbce6a78517 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0805_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0805_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0805.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0805.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f8aebd83948e7e1429b248f217e9b49e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0805;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18859;Cancer_Type=Other;Region_Number=74204;Length=46895.231 kb;GEO_SRA=SRR6412447;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOGDRKSJO7 Download track ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBOGDRKSJO7 Data Source ATACdb_v1.03 Download track Download Number of intervals 37,481 bp covered 18,381,230 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,201,367 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1388_accessible_chromatin_regions_hg38.bed.gz Processed file md5 32ef3a6e0da1cb174d9acaf523f4a993 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1388_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1388_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1388.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1388.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 1d936031ebb422689759ed256d9b9ff3 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1388;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=37576;Length=18459.095 kb;GEO_SRA=SRR6387576;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBOHI2MSQUD Download track ATACdb_v1.03 Prostate ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOHI2MSQUD Data Source ATACdb_v1.03 Download track Download Number of intervals 37,805 bp covered 498,748 Output type transcription factor binding sites Genome build hg38 cell type Prostate Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,192,179 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0175_hg38_motif_binding_sites.bed.gz Processed file md5 5c2c6317032fccdfc367b09edc92ea76 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0175_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0175_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0175;Biosample_Type=Tissue;Tissue_Type=Epithelial;Biosample_Name=Prostate;Cancer_Type=Other;Region_Number=8004;Length=3837.076 kb;GEO_SRA=SRR7651666;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Reproductive life stage Unknown trackName ATACdb_v1.03 Prostate ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOHIAJDE23 Download track ATACdb_v1.03 22Rv1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOHIAJDE23 Data Source ATACdb_v1.03 Download track Download Number of intervals 235,820 bp covered 3,198,341 Output type transcription factor binding sites Genome build hg38 cell type 22Rv1 Biosample type Cell line Biosamples term id EFO:0002095 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,879,347 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1452_hg38_motif_binding_sites.bed.gz Processed file md5 88e62a53eb5b064bf8d36231aac5a680 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1452_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1452_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1452;Biosample_Type=Cell Line;Tissue_Type=Prostate;Biosample_Name=22RV-1;Cancer_Type=Prostate cancer;Region_Number=46077;Length=35981.87 kb;GEO_SRA=SRR7290302;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Reproductive life stage Unknown trackName ATACdb_v1.03 22Rv1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOHP63OYIR Download track ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOHP63OYIR Data Source ATACdb_v1.03 Download track Download Number of intervals 76,368 bp covered 25,911,775 Output type accessible chromatin region Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,393,038 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0393_accessible_chromatin_regions_hg38.bed.gz Processed file md5 89e6cfc399d02deba7df945bc2df3f5e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0393_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0393_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0393.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0393.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a0800ce71f54e1afff6a9afb2e223e09 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0393;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=76441;Length=25939.998 kb;GEO_SRA=SRR7690514;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOHRLYQFCJ Download track ATACdb_v1.03 Keratinocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOHRLYQFCJ Data Source ATACdb_v1.03 Download track Download Number of intervals 81,293 bp covered 58,043,109 Output type accessible chromatin region Genome build hg38 cell type Keratinocyte Biosample type Primary cell Biosamples term id CL:0000312 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,640,815 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1232_accessible_chromatin_regions_hg38.bed.gz Processed file md5 6007bf46785e4ab743a25c48e3766d67 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1232_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1232_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1232.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1232.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a5d157b65713b00ed92f4c986dbb7d9f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1232;Biosample_Type=Primary Cell;Tissue_Type=keratinocyte;Biosample_Name=CTRL;Cancer_Type=Normal;Region_Number=81400;Length=58085.725 kb;GEO_SRA=SRR1944628;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Integumentary life stage Unknown trackName ATACdb_v1.03 Keratinocyte ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOIZ2J7SO2 Download track ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOIZ2J7SO2 Data Source ATACdb_v1.03 Download track Download Number of intervals 4,163 bp covered 1,637,632 Output type accessible chromatin region Genome build hg38 cell type CD8+ T cell Biosample type Cell line Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 128,636 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0840_accessible_chromatin_regions_hg38.bed.gz Processed file md5 85d07cbd53de8fdbb8e8d0c5e5f36aab wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0840_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0840_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0840.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0840.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ec0237903e753a70660843805ca651f7 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0840;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=T_T;Cancer_Type=The Yellow fever;Region_Number=4204;Length=1653.695 kb;GEO_SRA=SRR5839492;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD8+ T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOJ6D3TKFS Download track ATACdb_v1.03 WM989 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOJ6D3TKFS Data Source ATACdb_v1.03 Download track Download Number of intervals 50,665 bp covered 19,853,829 Output type accessible chromatin region Genome build hg38 cell type WM989 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,598,507 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1061_accessible_chromatin_regions_hg38.bed.gz Processed file md5 2535ac57a45f208458494bd29b3f6f43 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1061_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1061_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1061.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1061.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b7165c0c9704977a77dc84effb346901 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1061;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=50721;Length=19799.489 kb;GEO_SRA=SRR5444796;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 WM989 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOJGYESZ6L Download track ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOJGYESZ6L Data Source ATACdb_v1.03 Download track Download Number of intervals 15,905 bp covered 9,548,362 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 532,357 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0081_accessible_chromatin_regions_hg38.bed.gz Processed file md5 27eb0279175281f6820a68ab5b560e8b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0081_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0081_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0081.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0081.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a54dec902130c52111c7c9cec79059ff Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0081;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=15954;Length=9573.14 kb;GEO_SRA=SRR5417045;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:// system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOJSRNWCK3 Download track ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOJSRNWCK3 Data Source ATACdb_v1.03 Download track Download Number of intervals 1,105 bp covered 18,714 Output type transcription factor binding sites Genome build hg38 cell type Glioblastoma Biosample type Stem cell Biosamples term id NCIT:C3058 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 19,032 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1218_hg38_motif_binding_sites.bed.gz Processed file md5 12cc5ef25a803c776f3193e611d55d95 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1218_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1218_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1218;Biosample_Type=Stem Cell;Tissue_Type=Other;Biosample_Name=Glioblastoma cell;Cancer_Type=Glioblastoma;Region_Number=232;Length=84.612 kb;GEO_SRA=SRR1957099;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Nervous life stage Unknown trackName ATACdb_v1.03 Glioblastoma ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOJWL4G3Z2 Download track ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOJWL4G3Z2 Data Source ATACdb_v1.03 Download track Download Number of intervals 163,809 bp covered 2,228,801 Output type transcription factor binding sites Genome build hg38 cell type WM989 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,836,319 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1054_hg38_motif_binding_sites.bed.gz Processed file md5 ed3310a05602425a422d234b237b80cd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1054_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1054_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1054;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=60793;Length=23740.959 kb;GEO_SRA=SRR5444786;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOLHNWFZ4Q Download track ATACdb_v1.03 Nucleus accumbens ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOLHNWFZ4Q Data Source ATACdb_v1.03 Download track Download Number of intervals 42,694 bp covered 18,165,929 Output type accessible chromatin region Genome build hg38 cell type Nucleus accumbens Biosample type Tissue Biosamples term id UBERON:0001882 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,353,055 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0049_accessible_chromatin_regions_hg38.bed.gz Processed file md5 00f60fffaf8d895920f31e21703c0bbb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0049_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0049_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0049.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0049.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 75d08cb9e4fec3c6e0d1ee7604cdbd54 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0049;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=nucleus accumbens;Cancer_Type=Normal;Region_Number=42790;Length=18214 kb;GEO_SRA=SRR5343867;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Nervous life stage Unknown trackName ATACdb_v1.03 Nucleus accumbens ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOLT4MPFJT Download track ATACdb_v1.03 Hematopoietic cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOLT4MPFJT Data Source ATACdb_v1.03 Download track Download Number of intervals 48,664 bp covered 16,543,052 Output type accessible chromatin region Genome build hg38 cell type Hematopoietic cell Biosample type Stem cell Biosamples term id CL:0000988 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,525,785 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0747_accessible_chromatin_regions_hg38.bed.gz Processed file md5 027eb2ee94a4013e23e0d89eebf39b44 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0747_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0747_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0747.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0747.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f8592d0ca95a4803577fce0a036edee2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0747;Biosample_Type=Stem Cell;Tissue_Type=Hematopoietic;Biosample_Name=MSCiPS1-derived 5F hematopoietic cell;Cancer_Type=Normal;Region_Number=48724;Length=16565.109 kb;GEO_SRA=SRR4820770;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https:/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Hematopoietic cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOLZYH2ZDR Download track ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOLZYH2ZDR Data Source ATACdb_v1.03 Download track Download Number of intervals 1,037 bp covered 517,861 Output type accessible chromatin region Genome build hg38 cell type U2OS Biosample type Cell line Biosamples term id EFO:0002869 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 33,380 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0388_accessible_chromatin_regions_hg38.bed.gz Processed file md5 8db93ffde8c430ea56a2ce0ca37feb9f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0388_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0388_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0388.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0388.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e17728a7669b1caa5894273a21e7526b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0388;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=1074;Length=513.128 kb;GEO_SRA=SRR7699133;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Skeletal life stage Unknown trackName ATACdb_v1.03 U2OS ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOMHPH7MJI Download track ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOMHPH7MJI Data Source ATACdb_v1.03 Download track Download Number of intervals 39,984 bp covered 528,775 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,278,954 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1260_hg38_motif_binding_sites.bed.gz Processed file md5 0f8bbbf1e30dfe2aa4015110fd983d7a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1260_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1260_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1260;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=8984;Length=3348.899 kb;GEO_SRA=SRR1556339;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOMIOR4PDP Download track ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOMIOR4PDP Data Source ATACdb_v1.03 Download track Download Number of intervals 27,140 bp covered 19,214,729 Output type accessible chromatin region Genome build hg38 cell type Peripheral mononucleated cells Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 931,813 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1430_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f8973e13ae2ca43517830ead9f2ddd47 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1430_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1430_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1430.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1430.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 737da350476f0029ed89e0548a550812 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1430;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=27181;Length=19250.005 kb;GEO_SRA=SRR5785389;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cells ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOMOBSCC7Z Download track ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBOMOBSCC7Z Data Source ATACdb_v1.03 Download track Download Number of intervals 49,203 bp covered 30,392,905 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id Not available Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,587,808 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0133_accessible_chromatin_regions_hg38.bed.gz Processed file md5 67dd5a0b49f629fd186b9bbe7b699880 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0133_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0133_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0133.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0133.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5921fdd5b9be9b2ec19ec7203b0f2c05 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0133;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=49216;Length=30400.164 kb;GEO_SRA=SRR7839291;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic]
NGADBOMUMLGKAD Download track ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOMUMLGKAD Data Source ATACdb_v1.03 Download track Download Number of intervals 55,607 bp covered 734,983 Output type transcription factor binding sites Genome build hg38 cell type Primary motor cortex Biosample type Not applicable Biosamples term id UBERON:0001384 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,741,193 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0472_hg38_motif_binding_sites.bed.gz Processed file md5 aeee98b8bc163c5633dc4f96c8bfea9f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0472_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0472_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0472;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary motor cortex;Cancer_Type=Other;Region_Number=14730;Length=3957.947 kb;GEO_SRA=SRR5367739;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOMWJCJHBI Download track ATACdb_v1.03 Natural killer cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOMWJCJHBI Data Source ATACdb_v1.03 Download track Download Number of intervals 31,289 bp covered 18,730,373 Output type accessible chromatin region Genome build hg38 cell type Natural killer cell Biosample type Not applicable Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,063,818 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0276_accessible_chromatin_regions_hg38.bed.gz Processed file md5 59b3e53a5ded1b4400aa8f8e2233c903 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0276_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0276_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0276.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0276.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 9491887e07fb79c3aa46ff4922562619 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0276;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Immature_NK;Cancer_Type=Normal;Region_Number=31375;Length=18776.787 kb;GEO_SRA=SRR7650807;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Natural killer cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBONPNYNVMF Download track ATACdb_v1.03 T-helper 17 cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBONPNYNVMF Data Source ATACdb_v1.03 Download track Download Number of intervals 13,165 bp covered 5,106,414 Output type accessible chromatin region Genome build hg38 cell type T-helper 17 cell Biosample type Primary cell Biosamples term id CL:0000899 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 430,183 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0912_accessible_chromatin_regions_hg38.bed.gz Processed file md5 df244b0747ad319158a400d864b93f5b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0912_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0912_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0912.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0912.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7373252eab6ccce934bcb72b94f1d925 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0912;Biosample_Type=Primary Cell;Tissue_Type=Cytokine-secreting T helper cell (Th) counterparts;Biosample_Name=Th17;Cancer_Type=Other;Region_Number=13185;Length=5096.884 kb;GEO_SRA=SRR5831522;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=ht system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 17 cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOO2AC4GNT Download track ATACdb_v1.03 WT-hiPSC 1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOO2AC4GNT Data Source ATACdb_v1.03 Download track Download Number of intervals 1,411 bp covered 20,769 Output type transcription factor binding sites Genome build hg38 cell type WT-hiPSC 1 Biosample type Induced pluripotent stem cell line Biosamples term id Not available Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 42,914 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0136_hg38_motif_binding_sites.bed.gz Processed file md5 6878e73916b2a602f75a94eda465aa1a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0136_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0136_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0136;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Neuron;Biosample_Name=WT hiPSC#1;Cancer_Type=Branchio-Oculo-Facial Syndrome (BOFS);Region_Number=945;Length=281.041 kb;GEO_SRA=SRR6418911;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknow system category Nervous life stage Unknown trackName ATACdb_v1.03 WT-hiPSC 1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOO3ZOOJSA Download track ATACdb_v1.03 Hematopoietic progenitor cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOO3ZOOJSA Data Source ATACdb_v1.03 Download track Download Number of intervals 134,166 bp covered 1,789,584 Output type transcription factor binding sites Genome build hg38 cell type Hematopoietic progenitor cell Biosample type Primary cell Biosamples term id NCIT:C12551 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,286,346 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1355_hg38_motif_binding_sites.bed.gz Processed file md5 27138feee0a1e083e6564e03098a7dab wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1355_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1355_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1355;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=HSPC;Cancer_Type=Normal;Region_Number=23857;Length=15756.853 kb;GEO_SRA=SRR6811666;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Hematopoietic progenitor cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOOXMTCVZG Download track ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOOXMTCVZG Data Source ATACdb_v1.03 Download track Download Number of intervals 256,874 bp covered 3,490,472 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,805,699 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0806_hg38_motif_binding_sites.bed.gz Processed file md5 1c69de3840f133463e0a6dbcb03e8176 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0806_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0806_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0806;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18858;Cancer_Type=Other;Region_Number=66373;Length=42361.829 kb;GEO_SRA=SRR6412448;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOPPPYTLQ6 Download track ATACdb_v1.03 Liver ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
Show metadata Identifier NGADBOPPPYTLQ6 Data Source ATACdb_v1.03 Download track Download Number of intervals 40,515 bp covered 547,114 Output type transcription factor binding sites Genome build hg38 cell type Liver Biosample type Stem cell Biosamples term id UBERON:0002107 Tissue category Liver ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,366,168 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0018_hg38_motif_binding_sites.bed.gz Processed file md5 ebe696e47c418050478e1a0617695bff wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0018_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0018_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0018;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Liver cell;Cancer_Type=Normal;Region_Number=15150;Length=5675.662 kb;GEO_SRA=SRR7942741;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Digestive life stage Embryonic trackName ATACdb_v1.03 Liver ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic]
NGADBOQGXSZFIL Download track ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOQGXSZFIL Data Source ATACdb_v1.03 Download track Download Number of intervals 124,210 bp covered 1,677,013 Output type transcription factor binding sites Genome build hg38 cell type WM989 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,408,315 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1060_hg38_motif_binding_sites.bed.gz Processed file md5 1b0b54c70c211eb12590c0b1e643c72f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1060_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1060_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1060;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=50610;Length=19569.303 kb;GEO_SRA=SRR5444795;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOQHNMP67L Download track ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOQHNMP67L Data Source ATACdb_v1.03 Download track Download Number of intervals 31,914 bp covered 422,561 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 991,100 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1287_hg38_motif_binding_sites.bed.gz Processed file md5 0175e7bca3570121d8d1bc3e7b961280 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1287_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1287_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1287;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Leukemia;Region_Number=7151;Length=2566.067 kb;GEO_SRA=SRR1556366;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Unknown]
NGADBOQHP32WZL Download track ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOQHP32WZL Data Source ATACdb_v1.03 Download track Download Number of intervals 90,647 bp covered 52,591,308 Output type accessible chromatin region Genome build hg38 cell type HCASMC Biosample type Cell line Biosamples term id Not available Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,905,962 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0403_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7e5fd2f9daf97f1a7a21ea046eee4d72 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0403_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0403_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0403.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0403.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5bea9e3e7ca8622558d3d959bc0c09af Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0403;Biosample_Type=Cell Line;Tissue_Type=Coronary artery smooth muscle;Biosample_Name=200212;Cancer_Type=Coronary artery disease;Region_Number=90752;Length=52655.728 kb;GEO_SRA=SRR7064068;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
NGADBOQUDJFIK3 Download track ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]
Show metadata Identifier NGADBOQUDJFIK3 Data Source ATACdb_v1.03 Download track Download Number of intervals 24,367 bp covered 10,855,951 Output type accessible chromatin region Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 803,210 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1115_accessible_chromatin_regions_hg38.bed.gz Processed file md5 78f17c250df77507acd9ad0bc310047c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1115_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1115_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1115.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1115.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 5402c5b0e200567d12664c48d86b4439 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1115;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=24433;Length=10903.301 kb;GEO_SRA=SRR2999313;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Unknown]