NGENC2CS5OVNGU Download track ENCODE A549 (repl. 1, 2) TF ChIP-seq JUN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR489DIG] [Life stage: Adult]
Show metadata Identifier NGENC2CS5OVNGU Data Source ENCODE Download track Download Number of intervals 16,962 bp covered 9,891,831 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR489DIG Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody JUN Assay TF ChIP-seq File format bed narrowPeak File size 304,892 Downloaded date 09/10/2024 Release date 01/02/2021 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF235LDP.bed.gz Processed file md5 bea4384ce148240ca963201949edd32d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF235LDP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF235LDP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF235LDP/@@download/ENCFF235LDP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF235LDP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e78fce1dd03d717b23d6b9dda22cfe54 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 3 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR489DIG,GEO:GSE92809;Project=GGR;Award=U01HG007900;Experimen system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) TF ChIP-seq JUN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR489DIG] [Life stage: Adult]
NGENC2CT3HRA7W Download track ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ZNF281 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032DGZ] [Life stage: Adult]
Show metadata Identifier NGENC2CT3HRA7W Data Source ENCODE Download track Download Number of intervals 8,535 bp covered 3,196,265 Output type IDR thresholded peaks Genome build hg38 cell type WTC11 Biosample type Cell line Biosamples term id EFO:0009747 Tissue category Skin ENCODE Experiment id ENCSR032DGZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF281 Assay TF ChIP-seq File format bed narrowPeak File size 158,721 Downloaded date 07/10/2025 Release date 07/23/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF551GAV.bed.gz Processed file md5 70fcaa47ce2664859e3f9b9067c5cf65 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF551GAV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF551GAV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF551GAV/@@download/ENCFF551GAV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF551GAV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5d5af64f175abe6780afaa020c150319 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230952;Project=ENCODE;Award=UM1HG009411;Experiment_date_rele system category Integumentary life stage Adult trackName ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ZNF281 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032DGZ] [Life stage: Adult]
NGENC2CTPWTDKZ Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ZBTB5 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR786OQY] [Life stage: Adult]
Show metadata Identifier NGENC2CTPWTDKZ Data Source ENCODE Download track Download Number of intervals 3,332 bp covered 1,248,830 Output type conservative IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR786OQY Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZBTB5 Assay TF ChIP-seq File format bed narrowPeak File size 67,568 Downloaded date 06/12/2022 Release date 12/30/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF875BEW.bed.gz Processed file md5 f7a9c61f421f0e297b7ead85abf53977 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF875BEW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF875BEW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF875BEW/@@download/ENCFF875BEW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF875BEW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bbf92b3dab1533cae094f16fb48704b6 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE106047,FactorBook:ENCSR786OQY;Project=ENCODE;Award=U54HG system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ZBTB5 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR786OQY] [Life stage: Adult]
NGENC2CUKYYFDW Download track ENCODE Cerebellum (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGK] [Life stage: Embryonic]
Show metadata Identifier NGENC2CUKYYFDW Data Source ENCODE Download track Download Number of intervals 4,359 bp covered 323,588 Output type transcription start sites Genome build hg38 cell type Cerebellum Biosample type Tissue Biosamples term id UBERON:0002037 Tissue category Brain ENCODE Experiment id ENCSR000AGK Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody Not applicable Assay RAMPAGE File format bed idr_peak File size 117,184 Downloaded date 06/10/2020 Release date 03/25/2016 Date added to FILER 07/16/2020 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF439BPJ.bed.gz Processed file md5 6bebc1de1c5cd614b12c1dbc8b2ca2cf wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF439BPJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF439BPJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF439BPJ/@@download/ENCFF439BPJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF439BPJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fc36d03360b1cfa8c19da45889b97a26 Data Category TSS [Transcription Start Site] Genomic feature type RAMPAGE transcription start sites Track Description Biosample_summary=Homo sapiens cerebellum tissue female embryo (19 weeks) and female embryo (37 weeks);Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE87924;Project=ENCODE;Award=U54HG007004;Experiment system category Nervous life stage Embryonic trackName ENCODE Cerebellum (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR000AGK] [Life stage: Embryonic]
NGENC2CVVZXPOK Download track ENCODE HepG2 (repl. 1) TF ChIP-seq MLXIP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802UCW] [Life stage: Child]
Show metadata Identifier NGENC2CVVZXPOK Data Source ENCODE Download track Download Number of intervals 4,173 bp covered 1,470,508 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR802UCW Biological replicate(s) 1 Technical replicate 1_1 Antibody MLXIP Assay TF ChIP-seq File format bed narrowPeak File size 83,059 Downloaded date 06/12/2022 Release date 08/02/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF486GDN.bed.gz Processed file md5 0c6526c31c530aa8d39b80360e24abbc wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF486GDN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF486GDN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF486GDN/@@download/ENCFF486GDN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF486GDN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0a1e9862961ed3aa87cffbf6beda038e Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLXIP;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE188019;Project=ENCODE;Award=UM1HG009411;Experi system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1) TF ChIP-seq MLXIP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR802UCW] [Life stage: Child]
NGENC2CVX2NURJ Download track ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR036ELY] [Life stage: Adult]
Show metadata Identifier NGENC2CVX2NURJ Data Source ENCODE Download track Download Number of intervals 130,440 bp covered 1,864,901 Output type footprints Genome build hg38 cell type CD4+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000624 Tissue category Blood ENCODE Experiment id ENCSR036ELY Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 883,218 Downloaded date 05/15/2024 Release date 10/02/2020 Date added to FILER 05/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF044NXH.bed.gz Processed file md5 8815706a44218713546145a3e5ca8384 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF044NXH.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF044NXH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF044NXH/@@download/ENCFF044NXH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF044NXH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 62a8a270b8fca6e7181eb3aedb4a644f Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE169957;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-05;Su system category Cardiovascular life stage Adult trackName ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR036ELY] [Life stage: Adult]
NGENC2CWFI6PWL Download track ENCODE Kidney (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR765BSU] [Life stage: Embryonic]
Show metadata Identifier NGENC2CWFI6PWL Data Source ENCODE Download track Download Number of intervals 38,188 bp covered 7,806,231 Output type peaks pValue=0.001 Genome build hg38 cell type Kidney Biosample type Tissue Biosamples term id UBERON:0002113 Tissue category Kidney ENCODE Experiment id ENCSR765BSU Biological replicate(s) 1 Technical replicate 1_2 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 411,135 Downloaded date 06/12/2022 Release date 11/11/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF383DDN.bed.gz Processed file md5 a43702c8ffd2ca894d5b66f022e72fa2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF383DDN.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF383DDN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF383DDN/@@download/ENCFF383DDN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF383DDN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6570bc8a76d93e4d3e74659f07433d12 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens right kidney tissue female embryo (117 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 117 days;Reference=PMID:327282 system category Renal life stage Embryonic trackName ENCODE Kidney (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR765BSU] [Life stage: Embryonic]
NGENC2D2LJA6RC Download track ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR614NPG] [Life stage: Adult]
Show metadata Identifier NGENC2D2LJA6RC Data Source ENCODE Download track Download Number of intervals 52,695 bp covered 90,084,364 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR614NPG Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,557,717 Downloaded date 07/10/2025 Release date 10/01/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF822OWD.bed.gz Processed file md5 f96b1553edc63aa2f7cad141eec56aa5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF822OWD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF822OWD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF822OWD/@@download/ENCFF822OWD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF822OWD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1ad23ca301db42589d14b70a6ce6bb66 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91301;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=re system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR614NPG] [Life stage: Adult]
NGENC2D2XLIX5N Download track ENCODE IMR-90 (repl. 1) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR966RPQ] [Life stage: Embryonic]
Show metadata Identifier NGENC2D2XLIX5N Data Source ENCODE Download track Download Number of intervals 499,625 bp covered 163,978,552 Output type peaks Genome build hg38 cell type IMR-90 Biosample type Cell line Biosamples term id EFO:0001196 Tissue category Lung ENCODE Experiment id ENCSR966RPQ Biological replicate(s) 1 Technical replicate 1_1 Antibody POLR2A Assay ChIA-PET File format bed narrowPeak File size 12,104,899 Downloaded date 06/12/2022 Release date 09/22/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF858VHJ.bed.gz Processed file md5 f878aa3456511e30ba0216258ced4d7f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF858VHJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF858VHJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF858VHJ/@@download/ENCFF858VHJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF858VHJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 faa8295a43b485cd0b11025001a464a6 Data Category Chromatin interactions Genomic feature type ChIA-PET peaks Track Description Biosample_summary=Homo sapiens IMR-90;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSE242648;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-01-31;Submitted_track_name=LHI0001.no_input_all_peaks.maxscore1000.narrow system category Respiratory life stage Embryonic trackName ENCODE IMR-90 (repl. 1) ChIA-PET POLR2A peaks (narrowPeak) [Experiment: ENCSR966RPQ] [Life stage: Embryonic]
NGENC2D6B454YD Download track ENCODE iPS DF 6.9 (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR875QDS] [Life stage: Newborn]
Show metadata Identifier NGENC2D6B454YD Data Source ENCODE Download track Download Number of intervals 2,090 bp covered 1,318,500 Output type pseudoreplicated peaks Genome build hg38 cell type iPS DF 6.9 Biosample type Cell line Biosamples term id EFO:0007098 Tissue category iPSC ENCODE Experiment id ENCSR875QDS Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 49,299 Downloaded date 06/12/2022 Release date 10/10/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF968HRS.bed.gz Processed file md5 e2614a198bb9d0bb90627a5911d03ce7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF968HRS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF968HRS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF968HRS/@@download/ENCFF968HRS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF968HRS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cf771da46fe1e35e603fa893da2c05c4 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens iPS DF 6.9;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM752967,SCREEN-GRCh38:iPS_DF_6.9_male_newborn;Project=Roadmap;Award=U01ES017166; system category Stem Cell life stage Newborn trackName ENCODE iPS DF 6.9 (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR875QDS] [Life stage: Newborn]
NGENC2D6DFKTGU Download track ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR252FZA] [Life stage: Adult]
Show metadata Identifier NGENC2D6DFKTGU Data Source ENCODE Download track Download Number of intervals 24,095 bp covered 40,029,091 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR252FZA Biological replicate(s) 2, 3 Technical replicate 2_1, 3_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 730,261 Downloaded date 07/10/2025 Release date 10/02/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF290CUF.bed.gz Processed file md5 3965959284d612c502e05fb2f0246c9a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF290CUF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF290CUF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF290CUF/@@download/ENCFF290CUF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF290CUF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cbdcceff7d860a3d8c03f312260895d1 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91227;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=re system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR252FZA] [Life stage: Adult]
NGENC2D77WKCLT Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq HMG20B conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR925QAW] [Life stage: Child]
Show metadata Identifier NGENC2D77WKCLT Data Source ENCODE Download track Download Number of intervals 13,125 bp covered 4,272,673 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR925QAW Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody HMG20B Assay TF ChIP-seq File format bed narrowPeak File size 230,796 Downloaded date 06/12/2022 Release date 12/02/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF756WYV.bed.gz Processed file md5 c894c4edd0793cfbe5090743b8012e1b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF756WYV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF756WYV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF756WYV/@@download/ENCFF756WYV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF756WYV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 107cff43002a2b7d407de093582ea02b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244; system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq HMG20B conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR925QAW] [Life stage: Child]
NGENC2DASZ4TLQ Download track ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult]
Show metadata Identifier NGENC2DASZ4TLQ Data Source ENCODE Download track Download Number of intervals 7,281 bp covered 409,557 Output type transcription start sites Genome build hg38 cell type GM23338 Biosample type Cell line Biosamples term id EFO:0007950 Tissue category iPSC ENCODE Experiment id ENCSR410OSB Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay RAMPAGE File format bed tss_peak File size 341,157 Downloaded date 06/10/2020 Release date 03/28/2016 Date added to FILER 07/16/2020 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/tss_peak/hg38/ENCFF127QLK.bed.gz Processed file md5 a2fc797e37c6ebd2a14d10f57a9c2dd3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/tss_peak/hg38/ENCFF127QLK.bed.gz -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/tss_peak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/tss_peak/hg38/ENCFF127QLK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/tss_peak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF127QLK/@@download/ENCFF127QLK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF127QLK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6a96e79b14089d090c511469c1d14d86 Data Category TSS [Transcription Start Site] Genomic feature type RAMPAGE transcription start sites Track Description Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Thomas Gingeras, CSHL;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE88257;Project=ENCODE;Award=U54HG007004;Experiment_date_released=2014-11-20,20 system category Stem Cell life stage Adult trackName ENCODE GM23338 (repl. 2) RAMPAGE transcription start sites (tss_peak) [Experiment: ENCSR410OSB] [Life stage: Adult]
NGENC2DCNI5GEA Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF891 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR020CLV] [Life stage: Child]
Show metadata Identifier NGENC2DCNI5GEA Data Source ENCODE Download track Download Number of intervals 16,336 bp covered 8,637,005 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR020CLV Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF891 Assay TF ChIP-seq File format bed narrowPeak File size 317,616 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF871FBU.bed.gz Processed file md5 fe163c93dcfcd6b55149fbee4f7dfc6f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF871FBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF871FBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF871FBU/@@download/ENCFF871FBU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF871FBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fb4d1e3ae3f57a3729c8a9ccb014d831 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169874;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF891 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR020CLV] [Life stage: Child]
NGENC2DDZLVGLT Download track ENCODE KMS-11 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR539TKY] [Life stage: Adult]
Show metadata Identifier NGENC2DDZLVGLT Data Source ENCODE Download track Download Number of intervals 10,413 bp covered 9,407,550 Output type conservative IDR thresholded peaks Genome build hg38 cell type KMS-11 Biosample type Cell line Biosamples term id EFO:0005694 Tissue category Immune ENCODE Experiment id ENCSR539TKY Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 180,237 Downloaded date 06/12/2022 Release date 01/27/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF470HBG.bed.gz Processed file md5 503a9408a1d177aab9620f4832ff317d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF470HBG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF470HBG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF470HBG/@@download/ENCFF470HBG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF470HBG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ffee1cae4ac5a132c1886debb822d40a Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens KMS-11;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 67 years;Reference=PMID:32728046;External_resources=GEO:GSE105660,SCREEN-GRCh38:KMS-11;Project=ENCODE;Award=U54HG006991;Experiment_date_released=201 system category Lymphatic life stage Adult trackName ENCODE KMS-11 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR539TKY] [Life stage: Adult]
NGENC2DHIG42IM Download track ENCODE Mammary (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR635XBA] [Life stage: Adult]
Show metadata Identifier NGENC2DHIG42IM Data Source ENCODE Download track Download Number of intervals 49,144 bp covered 27,279,521 Output type pseudoreplicated peaks Genome build hg38 cell type Mammary Biosample type Stem cell Biosamples term id NCIT:C43595 Tissue category Stem Cell ENCODE Experiment id ENCSR635XBA Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 819,411 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz Processed file md5 e548cc0a152c67848a1155d09c4fe114 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF444LMB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF444LMB/@@download/ENCFF444LMB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF444LMB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 736ac00b12fc14c6ae33d6e7534e35a8 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens mammary stem cell female adult (33 years);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=adult 33 years;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted system category Stem Cell life stage Adult trackName ENCODE Mammary (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR635XBA] [Life stage: Adult]
NGENC2DHMTOJHU Download track ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DWJ] [Life stage: Adult]
Show metadata Identifier NGENC2DHMTOJHU Data Source ENCODE Download track Download Number of intervals 41,770 bp covered 42,031,631 Output type pseudoreplicated peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR000DWJ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,089,936 Downloaded date 06/12/2022 Release date 09/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249YJG.bed.gz Processed file md5 9736521aa7a6244659a38e4f049fbf5b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249YJG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF249YJG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF249YJG/@@download/ENCFF249YJG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF249YJG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e9ebe63cfce01d9cb284d285e4770bdd Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000967,GEO:GSM945269,SCREEN-GRCh38:MCF- system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DWJ] [Life stage: Adult]
NGENC2DIR7JW3M Download track ENCODE Skin (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR156MYA] [Life stage: Adult]
Show metadata Identifier NGENC2DIR7JW3M Data Source ENCODE Download track Download Number of intervals 16,386 bp covered 10,978,091 Output type pseudoreplicated peaks Genome build hg38 cell type Skin Biosample type Tissue Biosamples term id UBERON:0002097 Tissue category Skin ENCODE Experiment id ENCSR156MYA Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 407,701 Downloaded date 06/12/2022 Release date 07/23/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504DNA.bed.gz Processed file md5 c87672668220d14d137ee47801ad6eb8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504DNA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF504DNA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF504DNA/@@download/ENCFF504DNA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF504DNA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a68e62dd1452ace2da0f260768975486 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens skin epidermis tissue male adult (65 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 65 years;Reference=NR;External_resources=GEO:GSE167731;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-10,2020-09-03;Subm system category Integumentary life stage Adult trackName ENCODE Skin (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR156MYA] [Life stage: Adult]
NGENC2DISXDLDK Download track ENCODE T-cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR416QNA] [Life stage: Adult]
Show metadata Identifier NGENC2DISXDLDK Data Source ENCODE Download track Download Number of intervals 29,795 bp covered 6,227,908 Output type peaks pValue=0.001 Genome build hg38 cell type T-cell Biosample type Primary cell Biosamples term id CL:0000084 Tissue category Blood ENCODE Experiment id ENCSR416QNA Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 340,028 Downloaded date 06/12/2022 Release date 10/02/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF544SZW.bed.gz Processed file md5 06f3f7a92d76fe902a41a37d9dd9cc17 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF544SZW.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF544SZW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF544SZW/@@download/ENCFF544SZW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF544SZW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0e1a336d9fc0be5f04e71417e4c1bb32 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 33 years;Reference=NR;Exte system category Cardiovascular life stage Adult trackName ENCODE T-cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR416QNA] [Life stage: Adult]
NGENC2DKJ5SUVO Download track ENCODE RWPE2 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR306BHE] [Life stage: Unknown]
Show metadata Identifier NGENC2DKJ5SUVO Data Source ENCODE Download track Download Number of intervals 349,879 bp covered 4,686,875 Output type footprints Genome build hg38 cell type RWPE2 Biosample type Cell line Biosamples term id EFO:0007610 Tissue category Male Reproductive ENCODE Experiment id ENCSR306BHE Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 2,366,767 Downloaded date 06/12/2022 Release date 09/26/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF008YFC.bed.gz Processed file md5 449f7e8a8efc7d56845e6042d8d6bd63 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF008YFC.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF008YFC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF008YFC/@@download/ENCFF008YFC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF008YFC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ee6c9ec3097d57543cc9fdf054f160ce Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens RWPE2;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE170291;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-06;Submitted_track_name=footprints.fps.0.01.bb;ENC system category Reproductive life stage Unknown trackName ENCODE RWPE2 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR306BHE] [Life stage: Unknown]
NGENC2DKWFWBOC Download track ENCODE T47D (repl. 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BLM] [Life stage: Adult]
Show metadata Identifier NGENC2DKWFWBOC Data Source ENCODE Download track Download Number of intervals 8,566 bp covered 2,324,756 Output type IDR thresholded peaks Genome build hg38 cell type T47D Biosample type Cell line Biosamples term id EFO:0001247 Tissue category Female Reproductive ENCODE Experiment id ENCSR000BLM Biological replicate(s) 2 Technical replicate 2_1 Antibody EP300 Assay TF ChIP-seq File format bed narrowPeak File size 147,273 Downloaded date 07/10/2025 Release date 12/28/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464LZH.bed.gz Processed file md5 19a63f0150ad91a8cabdf692196d0737 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464LZH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF464LZH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF464LZH/@@download/ENCFF464LZH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF464LZH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 13869077ed706c0a9d0ce88b88781d7f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=NR;External_resources=FactorBook:ENCSR00 system category Reproductive life stage Adult trackName ENCODE T47D (repl. 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BLM] [Life stage: Adult]
NGENC2DN5ZR3P2 Download track ENCODE GM12878 (repl. 2) TF ChIP-seq BMI1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR469WII] [Life stage: Adult]
Show metadata Identifier NGENC2DN5ZR3P2 Data Source ENCODE Download track Download Number of intervals 10,836 bp covered 4,175,593 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR469WII Biological replicate(s) 2 Technical replicate 2_1 Antibody BMI1 Assay TF ChIP-seq File format bed narrowPeak File size 217,165 Downloaded date 06/12/2022 Release date 12/30/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345GWX.bed.gz Processed file md5 43d1b5f3456287566646f3c7f091309c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345GWX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345GWX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF345GWX/@@download/ENCFF345GWX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF345GWX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e5d84dac9595fc66e46c260486731313 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE91792,FactorBook:ENCSR469WII;Project=ENCODE;Award=U54 system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 2) TF ChIP-seq BMI1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR469WII] [Life stage: Adult]
NGENC2DO2EJTOL Download track ENCODE K562 (repl. 2) TF ChIP-seq HMGN3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOB] [Life stage: Adult]
Show metadata Identifier NGENC2DO2EJTOL Data Source ENCODE Download track Download Number of intervals 11,880 bp covered 5,280,382 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000DOB Biological replicate(s) 2 Technical replicate 2_1 Antibody HMGN3 Assay TF ChIP-seq File format bed narrowPeak File size 221,332 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF666TDF.bed.gz Processed file md5 3af1b3e9fa20f5505be727be60c60477 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF666TDF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF666TDF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF666TDF/@@download/ENCFF666TDF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF666TDF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 46b3672d853130243388416374147220 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSM935544,UCSC-ENCODE-hg19:wgEncodeEH001863;Project=EN system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq HMGN3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOB] [Life stage: Adult]
NGENC2DOYEZD2R Download track ENCODE A673 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR435FGK] [Life stage: Child]
Show metadata Identifier NGENC2DOYEZD2R Data Source ENCODE Download track Download Number of intervals 31,940 bp covered 38,778,081 Output type pseudoreplicated peaks Genome build hg38 cell type A673 Biosample type Cell line Biosamples term id EFO:0002106 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR435FGK Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 875,996 Downloaded date 06/12/2022 Release date 10/20/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF541WWU.bed.gz Processed file md5 7384d754f8820373175ee0b97f087cb3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF541WWU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF541WWU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF541WWU/@@download/ENCFF541WWU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF541WWU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0f1ba3968944c8934824c41b6ea33d50 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A673;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=GEO:GSE101154,SCREEN-GRCh38:A673;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05 system category Muscular life stage Child trackName ENCODE A673 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR435FGK] [Life stage: Child]
NGENC2DQGMRGKR Download track ENCODE Lung (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR337LGY] [Life stage: Adult]
Show metadata Identifier NGENC2DQGMRGKR Data Source ENCODE Download track Download Number of intervals 33,087 bp covered 36,533,195 Output type pseudoreplicated peaks Genome build hg38 cell type Lung Biosample type Tissue Biosamples term id UBERON:0002048 Tissue category Lung ENCODE Experiment id ENCSR337LGY Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 660,307 Downloaded date 06/12/2022 Release date 06/06/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz Processed file md5 23023d60e20eed6a5447bc161d66d79a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF200NVU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF200NVU/@@download/ENCFF200NVU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF200NVU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c07b37704736f5d4d9f71a7761fd7d65 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens upper lobe of right lung tissue male adult (60 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 60 years;Reference=NR;External_resources=GEO:GSE208913;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022- system category Respiratory life stage Adult trackName ENCODE Lung (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR337LGY] [Life stage: Adult]
NGENC2DQW2R7RV Download track ENCODE Prostate gland (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR748RBT] [Life stage: Adult]
Show metadata Identifier NGENC2DQW2R7RV Data Source ENCODE Download track Download Number of intervals 18,953 bp covered 31,391,717 Output type replicated peaks Genome build hg38 cell type Prostate gland Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id ENCSR748RBT Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 558,616 Downloaded date 06/12/2022 Release date 09/22/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF379AGG.bed.gz Processed file md5 5992ed69b20f903d4c5308dfd5f24f05 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF379AGG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF379AGG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF379AGG/@@download/ENCFF379AGG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF379AGG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b7579f4c63c1e852860b36f3d54ff8b4 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 replicated peaks Track Description Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=SCREEN-GRCh38:prostate_gland_male_adult_54_years,GEO:GSE143071;Project=ENCODE;A system category Reproductive life stage Adult trackName ENCODE Prostate gland (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR748RBT] [Life stage: Adult]
NGENC2DRYN6ZJW Download track ENCODE Epithelial cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EOF] [Life stage: Unknown]
Show metadata Identifier NGENC2DRYN6ZJW Data Source ENCODE Download track Download Number of intervals 70,100 bp covered 11,999,776 Output type peaks pValue=0.001 Genome build hg38 cell type Epithelial cell Biosample type Primary cell Biosamples term id CL:0000066 Tissue category Eye ENCODE Experiment id ENCSR000EOF Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 784,063 Downloaded date 06/12/2022 Release date 11/12/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF790UKP.bed.gz Processed file md5 cf7c3de0ae54e5489401e8e2fcc85478 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF790UKP.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF790UKP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF790UKP/@@download/ENCFF790UKP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF790UKP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 14b24a0bd62a9b0f762ba09a070a736a Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens non-pigmented ciliary epithelial cell;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=G system category Sensory life stage Unknown trackName ENCODE Epithelial cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EOF] [Life stage: Unknown]
NGENC2DTT5PXSD Download track ENCODE Liver (repl. 1, 2) TF ChIP-seq FOXA2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR310NYI] [Life stage: Adult]
Show metadata Identifier NGENC2DTT5PXSD Data Source ENCODE Download track Download Number of intervals 23,156 bp covered 7,546,812 Output type conservative IDR thresholded peaks Genome build hg38 cell type Liver Biosample type Tissue Biosamples term id UBERON:0002107 Tissue category Liver ENCODE Experiment id ENCSR310NYI Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody FOXA2 Assay TF ChIP-seq File format bed narrowPeak File size 415,067 Downloaded date 06/12/2022 Release date 12/08/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514UPS.bed.gz Processed file md5 f9ac010cbff5b3b71661722ee7c46dbc wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514UPS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF514UPS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF514UPS/@@download/ENCFF514UPS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF514UPS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8f3fde438b9d9edb9adccde243b1d57b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 32 years;Reference=NR;External_resources=G system category Digestive life stage Adult trackName ENCODE Liver (repl. 1, 2) TF ChIP-seq FOXA2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR310NYI] [Life stage: Adult]
NGENC2DVKALJDX Download track ENCODE Muscle (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR956NOL] [Life stage: Embryonic]
Show metadata Identifier NGENC2DVKALJDX Data Source ENCODE Download track Download Number of intervals 21,726 bp covered 4,495,940 Output type peaks pValue=0.001 Genome build hg38 cell type Muscle Biosample type Tissue Biosamples term id NCIT:C13056 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR956NOL Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 232,534 Downloaded date 06/12/2022 Release date 11/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF570BXA.bed.gz Processed file md5 6157a9993bc44b086933e9bb3924c0a9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF570BXA.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF570BXA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF570BXA/@@download/ENCFF570BXA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF570BXA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b917924047408510d63028924a05b6e1 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens muscle of arm tissue male embryo (127 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 127 days;Reference=PMID:3272821 system category Muscular life stage Embryonic trackName ENCODE Muscle (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR956NOL] [Life stage: Embryonic]
NGENC2DXPV347M Download track ENCODE H1-hESC (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR186OBR] [Life stage: Embryonic]
Show metadata Identifier NGENC2DXPV347M Data Source ENCODE Download track Download Number of intervals 42,418 bp covered 20,324,471 Output type pseudoreplicated peaks Genome build hg38 cell type H1-hESC Biosample type Stem cell Biosamples term id EFO:0003042 Tissue category Embryo ENCODE Experiment id ENCSR186OBR Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 964,725 Downloaded date 06/12/2022 Release date 11/25/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz Processed file md5 9cd65d40afb00c07566dd73172ca97d3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF856AIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF856AIT/@@download/ENCFF856AIT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF856AIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 88e413ad199090dfd033276046d4cf14 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM605308,GEO:GSM466734;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overla system category Embryo life stage Embryonic trackName ENCODE H1-hESC (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR186OBR] [Life stage: Embryonic]
NGENC2DXVF6SSH Download track ENCODE DND-41 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR903SKE] [Life stage: Child]
Show metadata Identifier NGENC2DXVF6SSH Data Source ENCODE Download track Download Number of intervals 401,184 bp covered 6,141,571 Output type footprints Genome build hg38 cell type DND-41 Biosample type Cell line Biosamples term id EFO:0007074 Tissue category Blood ENCODE Experiment id ENCSR903SKE Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 2,673,963 Downloaded date 06/12/2022 Release date 09/22/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF688MVM.bed.gz Processed file md5 ccbe55b827810aad3eeafdd81c4d5c8e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF688MVM.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF688MVM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF688MVM/@@download/ENCFF688MVM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF688MVM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c5df94a6a42a5972be8da4688a484e83 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens DND-41;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 13 years;Reference=NR;External_resources=GEO:GSE170568;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-06;Submitted_track_name=footprints.fp system category Cardiovascular life stage Child trackName ENCODE DND-41 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR903SKE] [Life stage: Child]
NGENC2DYONBTMO Download track ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq MTA3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR391KQC] [Life stage: Adult]
Show metadata Identifier NGENC2DYONBTMO Data Source ENCODE Download track Download Number of intervals 1,761 bp covered 563,007 Output type conservative IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR391KQC Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody MTA3 Assay TF ChIP-seq File format bed narrowPeak File size 35,804 Downloaded date 06/12/2022 Release date 03/20/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF230CKR.bed.gz Processed file md5 a81b9ed7e16674aeea0b3a21739d647c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF230CKR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF230CKR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF230CKR/@@download/ENCFF230CKR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF230CKR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5d19a883f6bd324817cbc88697c8b51b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91727;Project=ENCODE;Award=U54HG006996;Expe system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq MTA3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR391KQC] [Life stage: Adult]
NGENC2DZPFE2CD Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF778 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR141ELR] [Life stage: Child]
Show metadata Identifier NGENC2DZPFE2CD Data Source ENCODE Download track Download Number of intervals 3,705 bp covered 2,024,841 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR141ELR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF778 Assay TF ChIP-seq File format bed narrowPeak File size 75,234 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575OFN.bed.gz Processed file md5 0dca49e2e4588fe4195187f290d9fe82 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575OFN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575OFN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF575OFN/@@download/ENCFF575OFN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF575OFN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b994fca47168f6d776a4e49a2f43bf63 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170473;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF778 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR141ELR] [Life stage: Child]
NGENC2E26A6ODX Download track ENCODE K562 (repl. 1) TF ChIP-seq NBN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR085QEV] [Life stage: Adult]
Show metadata Identifier NGENC2E26A6ODX Data Source ENCODE Download track Download Number of intervals 13,518 bp covered 5,431,303 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR085QEV Biological replicate(s) 1 Technical replicate 1_1 Antibody NBN Assay TF ChIP-seq File format bed narrowPeak File size 261,572 Downloaded date 06/12/2022 Release date 12/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF084VTS.bed.gz Processed file md5 abd6cd2cbf39f51819d0dc0a4fb30ce7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF084VTS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF084VTS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF084VTS/@@download/ENCFF084VTS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF084VTS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ed621b71084b676de95f3d2717a18126 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91464;Project=ENCODE;Award=U54HG006996;Exper system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq NBN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR085QEV] [Life stage: Adult]
NGENC2E5ZU26LP Download track ENCODE K562 (repl. 2) eCLIP APOBEC3C peaks (narrowPeak) [Experiment: ENCSR739VVT] [Life stage: Adult]
Show metadata Identifier NGENC2E5ZU26LP Data Source ENCODE Download track Download Number of intervals 5,637 bp covered 316,391 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR739VVT Biological replicate(s) 2 Technical replicate 2_1 Antibody APOBEC3C Assay eCLIP File format bed narrowPeak File size 114,503 Downloaded date 06/10/2020 Release date 08/16/2018 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF709WDL.bed.gz Processed file md5 8841fcb983883e2400d939bc13a60625 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF709WDL.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF709WDL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF709WDL/@@download/ENCFF709WDL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF709WDL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8fb6da11baa596f93019b1f76fdf800e Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE177595;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=374x4000fix_02.basedon_374x4000fix_02.pe system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) eCLIP APOBEC3C peaks (narrowPeak) [Experiment: ENCSR739VVT] [Life stage: Adult]
NGENC2E6XJYWWO Download track ENCODE T-cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR965JHW] [Life stage: Adult]
Show metadata Identifier NGENC2E6XJYWWO Data Source ENCODE Download track Download Number of intervals 160,204 bp covered 2,380,334 Output type footprints Genome build hg38 cell type T-cell Biosample type Primary cell Biosamples term id CL:0000084 Tissue category Immune ENCODE Experiment id ENCSR965JHW Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,082,082 Downloaded date 06/12/2022 Release date 09/22/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF282PPA.bed.gz Processed file md5 78b0da7d932181451bb500563930dfc2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF282PPA.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF282PPA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF282PPA/@@download/ENCFF282PPA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF282PPA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 71ac1fc98afda17d9229b386de40d7a5 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens T-cell male adult (25 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 25 years;Reference=NR;External_resources=GEO:GSE170808;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-02;Submitted_tr system category Lymphatic life stage Adult trackName ENCODE T-cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR965JHW] [Life stage: Adult]
NGENC2EA4GT7TG Download track ENCODE GM12864 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMR] [Life stage: Unknown]
Show metadata Identifier NGENC2EA4GT7TG Data Source ENCODE Download track Download Number of intervals 47,517 bp covered 8,326,778 Output type peaks pValue=0.001 Genome build hg38 cell type GM12864 Biosample type Cell line Biosamples term id EFO:0005337 Tissue category Blood ENCODE Experiment id ENCSR000EMR Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 533,780 Downloaded date 06/12/2022 Release date 11/18/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF036UND.bed.gz Processed file md5 33ea1350a7f865d933733dedc8408d16 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF036UND.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF036UND.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF036UND/@@download/ENCFF036UND.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF036UND.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 31cfc5ea456cc107c896f09135196896 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens GM12864;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=GEO:GSM736525,UCSC-ENCODE-hg19: system category Cardiovascular life stage Unknown trackName ENCODE GM12864 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMR] [Life stage: Unknown]
NGENC2EARZHHXH Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR924LSO] [Life stage: Child]
Show metadata Identifier NGENC2EARZHHXH Data Source ENCODE Download track Download Number of intervals 21,944 bp covered 9,502,487 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR924LSO Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody E2F4 Assay TF ChIP-seq File format bed narrowPeak File size 420,838 Downloaded date 06/12/2022 Release date 07/01/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311TOD.bed.gz Processed file md5 9afdf508f52890c78e4af738018b25b9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311TOD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF311TOD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF311TOD/@@download/ENCFF311TOD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF311TOD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6f25a5e35e76ff40dc3f9e1ffbda485c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170651;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR924LSO] [Life stage: Child]
NGENC2ECHKNEGR Download track ENCODE Caudate nucleus (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR373TLU] [Life stage: Adult]
Show metadata Identifier NGENC2ECHKNEGR Data Source ENCODE Download track Download Number of intervals 681,246 bp covered 7,708,765 Output type footprints Genome build hg38 cell type Caudate nucleus Biosample type Tissue Biosamples term id UBERON:0001873 Tissue category Brain ENCODE Experiment id ENCSR373TLU Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 4,614,424 Downloaded date 06/12/2022 Release date 04/15/2021 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF406FBK.bed.gz Processed file md5 5052eb8182b482956e63aefd58708efa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF406FBK.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF406FBK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF406FBK/@@download/ENCFF406FBK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF406FBK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 374d7884b2d997059d7b39d2d66eb018 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens with Alzheimer's disease| head of caudate nucleus tissue female adult (86 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 86 years;Reference=NR;External_resources=GEO:GSE187336;Project=ENCODE;Award=U system category Nervous life stage Adult trackName ENCODE Caudate nucleus (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR373TLU] [Life stage: Adult]
NGENC2EDWAMOLZ Download track ENCODE K562 (repl. 1) TF ChIP-seq ZNF785 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR222TVA] [Life stage: Adult]
Show metadata Identifier NGENC2EDWAMOLZ Data Source ENCODE Download track Download Number of intervals 215 bp covered 71,135 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR222TVA Biological replicate(s) 1 Technical replicate 1_1 Antibody ZNF785 Assay TF ChIP-seq File format bed narrowPeak File size 4,681 Downloaded date 06/12/2022 Release date 07/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203DXW.bed.gz Processed file md5 1169bdb7d41039249cdda5faccb4795a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203DXW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203DXW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF203DXW/@@download/ENCFF203DXW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF203DXW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8ebb847d80127730f7ba7fbe7f218fea Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF785;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE169854;Project=ENCODE;Award=UM1HG009442;E system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq ZNF785 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR222TVA] [Life stage: Adult]
NGENC2EE4BQ2MY Download track ENCODE hTERT RPE-1 (repl. 1, 2, 3, 4) in situ Hi-C chromatin interactions (bed4+19 interact) [Experiment: ENCSR566XIP] [Life stage: Child]
Show metadata Identifier NGENC2EE4BQ2MY Data Source ENCODE Download track Download Number of intervals 83,280 bp covered 989,700,000 Output type chromatin interactions Genome build hg38 cell type hTERT RPE-1 Biosample type Cell line Biosamples term id CLO:0004290 Tissue category Eye ENCODE Experiment id ENCSR566XIP Biological replicate(s) 1, 2, 3, 4 Technical replicate 1_1, 1_2, 2_1, 3_1, 4_1, 4_2 Antibody Not applicable Assay in situ Hi-C File format bed bed4+19 interact File size 7,855,114 Downloaded date 09/20/2025 Release date 01/26/2022 Date added to FILER 10/30/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/in_situ_Hi-C/bed4plus19_interact/hg38/formatted_output_ENCFF867YSZ.bed.gz Processed file md5 2d47c58e4c334b0e73b5259ca3c1aaaa wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/in_situ_Hi-C/bed4plus19_interact/hg38/formatted_output_ENCFF867YSZ.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/in_situ_Hi-C/bed4plus19_interact/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/in_situ_Hi-C/bed4plus19_interact/hg38/formatted_output_ENCFF867YSZ.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/in_situ_Hi-C/bed4plus19_interact/hg38/ Link out URL https://www.encodeproject.org/ Raw File URL https://www.encodeproject.org/files/ENCFF867YSZ/@@download/ENCFF867YSZ.bedpe.gz Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF867YSZ.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ Raw file md5 51900e446c5cbf822bdce65d4044949e Data Category Chromatin interactions Genomic feature type Hi-C chromatin interactions Track Description Biosample_summary=Homo sapiens hTERT RPE-1 genetically modified (deletion) using TALEN;Lab=Erez Aiden, Baylor;ENCODE_internal_tags=NR;Life_stage_age=child 1 year;Reference=NR;External_resources=GEO:GSE71831;Project=ENCODE;Award=UM1HG009375;Experiment_date_released=2020-08-28;Submitted_track_name=mer system category Sensory life stage Child trackName ENCODE hTERT RPE-1 (repl. 1, 2, 3, 4) in situ Hi-C chromatin interactions (bed4+19 interact) [Experiment: ENCSR566XIP] [Life stage: Child]
NGENC2EEED3DHB Download track ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DXO] [Life stage: Child]
Show metadata Identifier NGENC2EEED3DHB Data Source ENCODE Download track Download Number of intervals 73,502 bp covered 23,478,394 Output type pseudoreplicated peaks Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR000DXO Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,357,801 Downloaded date 07/10/2025 Release date 10/28/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz Processed file md5 7f351c58c0d5367ff136593a3966e0dd wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF849UPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF849UPL/@@download/ENCFF849UPL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF849UPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c8f523bcee3ac698f7e279cf966fbd2c Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSM945209,UCSC-ENCODE-hg19:wgEncodeEH000441;Project=ENCODE system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DXO] [Life stage: Child]
NGENC2EFDAUPVV Download track ENCODE K562 (repl. 1) TF ChIP-seq PATZ1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR549PVK] [Life stage: Adult]
Show metadata Identifier NGENC2EFDAUPVV Data Source ENCODE Download track Download Number of intervals 1,482 bp covered 495,905 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR549PVK Biological replicate(s) 1 Technical replicate 1_1 Antibody PATZ1 Assay TF ChIP-seq File format bed narrowPeak File size 29,776 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845MPH.bed.gz Processed file md5 da8408028a656e1940b8b9688e3bbdc2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845MPH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845MPH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF845MPH/@@download/ENCFF845MPH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF845MPH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 91eea9979e237d3b6383ad076ff97df4 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170596;Project=ENCODE;Award=UM1HG009442;Ex system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq PATZ1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR549PVK] [Life stage: Adult]
NGENC2EFU7V6GB Download track ENCODE GM04503 (repl. 2) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EMO] [Life stage: Adult]
Show metadata Identifier NGENC2EFU7V6GB Data Source ENCODE Download track Download Number of intervals 88,460 bp covered 17,451,676 Output type peaks pValue=0.05 Genome build hg38 cell type GM04503 Biosample type Cell line Biosamples term id CLO:0018813 Tissue category Skin ENCODE Experiment id ENCSR000EMO Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 970,603 Downloaded date 06/12/2022 Release date 11/12/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF727PQO.bed.gz Processed file md5 cbaf87efc666b90c0e6656d285e8e814 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF727PQO.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF727PQO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF727PQO/@@download/ENCFF727PQO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF727PQO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ba73ad4ec087879a3412b157a4d4cbaa Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens GM04503;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728217;External_resources=GEO:GSM1024780,SCRE system category Integumentary life stage Adult trackName ENCODE GM04503 (repl. 2) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EMO] [Life stage: Adult]
NGENC2EHF25YYT Download track ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR056CYG] [Life stage: Unknown]
Show metadata Identifier NGENC2EHF25YYT Data Source ENCODE Download track Download Number of intervals 29,026 bp covered 46,799,031 Output type pseudoreplicated peaks Genome build hg38 cell type BLaER1 Biosample type Cell line Biosamples term id EFO:0030018 Tissue category Blood ENCODE Experiment id ENCSR056CYG Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 852,594 Downloaded date 05/15/2024 Release date 02/17/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF702CLW.bed.gz Processed file md5 130e40d0dcdbba7f44d3a04a73909909 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF702CLW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF702CLW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF702CLW/@@download/ENCFF702CLW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF702CLW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 15031958f4771be3cddc567bf1c00946 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens BLaER1 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257174;Project=community;Award=ERC-2011-AdG system category Cardiovascular life stage Unknown trackName ENCODE BLaER1 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR056CYG] [Life stage: Unknown]
NGENC2EIE4DYIT Download track ENCODE SK-N-SH (repl. 2) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR145HNT] [Life stage: Child]
Show metadata Identifier NGENC2EIE4DYIT Data Source ENCODE Download track Download Number of intervals 33,412,034 bp covered 33,412,034 Output type methylation state at CpG Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR145HNT Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 425,316,182 Downloaded date 06/12/2022 Release date 07/18/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF866OKW.bed.gz Processed file md5 1d1bd42926d0036283c44c0839a84b3f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF866OKW.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF866OKW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF866OKW/@@download/ENCFF866OKW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF866OKW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1c43e61bd88cc1a995e751d78c790620 Data Category Methylation Genomic feature type WGB-Seq methylation state at CpG Track Description Biosample_summary=Homo sapiens SK-N-SH;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMCID:PMC7343189;External_resources=GEO:GSE127286;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2017-12-13;Submitted_track_name=sample_1_cpg.bb;ENCODE system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 2) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR145HNT] [Life stage: Child]
NGENC2EJQZ3LT7 Download track ENCODE Thyroid gland (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR549NRK] [Life stage: Adult]
Show metadata Identifier NGENC2EJQZ3LT7 Data Source ENCODE Download track Download Number of intervals 163,842 bp covered 29,591,885 Output type peaks pValue=0.001 Genome build hg38 cell type Thyroid gland Biosample type Tissue Biosamples term id UBERON:0002046 Tissue category Endocrine ENCODE Experiment id ENCSR549NRK Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,914,833 Downloaded date 06/12/2022 Release date 10/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF410LCI.bed.gz Processed file md5 b26a4360310fba63f12cc51e0081f510 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF410LCI.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF410LCI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF410LCI/@@download/ENCFF410LCI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF410LCI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 31c9167d1a4b20133cb3576828897a0f Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens thyroid gland tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE170580;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=201 system category Endocrine life stage Adult trackName ENCODE Thyroid gland (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR549NRK] [Life stage: Adult]
NGENC2EK5M3LCL Download track ENCODE Keratinocyte (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNC] [Life stage: Unknown]
Show metadata Identifier NGENC2EK5M3LCL Data Source ENCODE Download track Download Number of intervals 39,891 bp covered 6,704,388 Output type IDR thresholded peaks Genome build hg38 cell type Keratinocyte Biosample type Primary cell Biosamples term id CL:0000312 Tissue category Skin ENCODE Experiment id ENCSR000DNC Biological replicate(s) 2 Technical replicate 2_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 696,176 Downloaded date 06/12/2022 Release date 09/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz Processed file md5 292e2c86282dbfbf7948581d68dccf18 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246WCO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF246WCO/@@download/ENCFF246WCO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF246WCO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7a118e8c574caaa979213566846ae26d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens keratinocyte female;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:keratinocyte system category Integumentary life stage Unknown trackName ENCODE Keratinocyte (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNC] [Life stage: Unknown]
NGENC2EL57OORZ Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZFP64 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR487CPI] [Life stage: Child]
Show metadata Identifier NGENC2EL57OORZ Data Source ENCODE Download track Download Number of intervals 9,467 bp covered 3,213,066 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR487CPI Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZFP64 Assay TF ChIP-seq File format bed narrowPeak File size 168,875 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF529FMN.bed.gz Processed file md5 4752716b0f8f16a5a0e878c70c9d4974 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF529FMN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF529FMN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF529FMN/@@download/ENCFF529FMN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF529FMN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b086afb5ca806e4e9398ddf04ed4dc62 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP64;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;E system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZFP64 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR487CPI] [Life stage: Child]
NGENC2EMUDCQDF Download track ENCODE SK-N-SH (repl. 1) TF ChIP-seq TAF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQF] [Life stage: Child]
Show metadata Identifier NGENC2EMUDCQDF Data Source ENCODE Download track Download Number of intervals 7,341 bp covered 1,385,225 Output type IDR thresholded peaks Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR000BQF Biological replicate(s) 1 Technical replicate 1_1 Antibody TAF1 Assay TF ChIP-seq File format bed narrowPeak File size 120,412 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552WZQ.bed.gz Processed file md5 6e53cfb53b7f00fc83bdeb15de7ffc6e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552WZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF552WZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF552WZQ/@@download/ENCFF552WZQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF552WZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6a1d4625651b3325ccbad315c7ed53f1 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens SK-N-SH;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSM1010773,UCSC-ENCODE-hg19:wgEncodeEH002301;Proje system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 1) TF ChIP-seq TAF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQF] [Life stage: Child]