NGENC2AJQVSSUM Download track ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR940UEK] [Life stage: Adult]
Show metadata Identifier NGENC2AJQVSSUM Data Source ENCODE Download track Download Number of intervals 324,943 bp covered 4,654,403 Output type footprints Genome build hg38 cell type CD4+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000624 Tissue category Blood ENCODE Experiment id ENCSR940UEK Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 2,170,870 Downloaded date 05/15/2024 Release date 10/03/2020 Date added to FILER 05/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF741VNP.bed.gz Processed file md5 76e90d16f1968e6c4e3fb32fe0bc1d60 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF741VNP.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF741VNP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF741VNP/@@download/ENCFF741VNP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF741VNP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8828e92d0423528e27be347010d2548c Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-10 for 1 hour;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 39 years;Reference=NR;External_resources=GEO:GSE172947;Project=ENCODE; system category Cardiovascular life stage Adult trackName ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR940UEK] [Life stage: Adult]
NGENC2AKBXTHMR Download track ENCODE GM12878 (repl. 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult]
Show metadata Identifier NGENC2AKBXTHMR Data Source ENCODE Download track Download Number of intervals 12,213 bp covered 3,192,608 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR000BHA Biological replicate(s) 2 Technical replicate 2_1 Antibody BCL11A Assay TF ChIP-seq File format bed narrowPeak File size 203,372 Downloaded date 06/12/2022 Release date 12/11/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz Processed file md5 bf5902394b5cabe516276bbd907718ae wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF540LNB/@@download/ENCFF540LNB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF540LNB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 78ac9a0c95793d92349d5beae2df8f60 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001486,GEO:GSM803388,FactorBook:ENCSR0 system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult]
NGENC2AL3PDBYM Download track ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZNF529 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR754SOI] [Life stage: Embryonic]
Show metadata Identifier NGENC2AL3PDBYM Data Source ENCODE Download track Download Number of intervals 1,362 bp covered 438,796 Output type conservative IDR thresholded peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR754SOI Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF529 Assay TF ChIP-seq File format bed narrowPeak File size 28,775 Downloaded date 06/12/2022 Release date 08/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF062HQX.bed.gz Processed file md5 dce51d8238ccb6b621f36bdd1a27e5ce wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF062HQX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF062HQX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF062HQX/@@download/ENCFF062HQX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF062HQX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 61208ddc01969ad5b2fd75dfbdea940b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_re system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZNF529 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR754SOI] [Life stage: Embryonic]
NGENC2AN57HPVJ Download track ENCODE HCT116 (repl. 2) ChIA-PET POLR2A chromatin interactions (bed4+19 interact) [Experiment: ENCSR553HMH] [Life stage: Adult]
Show metadata Identifier NGENC2AN57HPVJ Data Source ENCODE Download track Download Number of intervals 634,648 bp covered 421,251,012 Output type chromatin interactions Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id ENCSR553HMH Biological replicate(s) 2 Technical replicate 2_1 Antibody POLR2A Assay ChIA-PET File format bed bed4+19 interact File size 22,747,159 Downloaded date 09/20/2025 Release date 02/07/2022 Date added to FILER 10/30/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF727SSY.bed.gz Processed file md5 7da50007966839f30ca0cb3382d5f9c4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF727SSY.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF727SSY.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ Link out URL https://www.encodeproject.org/ Raw File URL https://www.encodeproject.org/files/ENCFF727SSY/@@download/ENCFF727SSY.bedpe.gz Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF727SSY.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ Raw file md5 951446aa5ca1eededde091bc733ae900 Data Category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions Track Description Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Charles Lee;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 y system category Digestive life stage Adult trackName ENCODE HCT116 (repl. 2) ChIA-PET POLR2A chromatin interactions (bed4+19 interact) [Experiment: ENCSR553HMH] [Life stage: Adult]
NGENC2AOGNGZ5Y Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ZC3H11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFR] [Life stage: Adult]
Show metadata Identifier NGENC2AOGNGZ5Y Data Source ENCODE Download track Download Number of intervals 2,489 bp covered 818,374 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000EFR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZC3H11A Assay TF ChIP-seq File format bed narrowPeak File size 50,120 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850RGJ.bed.gz Processed file md5 32f2631bcf85c57d8c466267b63cd2bf wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850RGJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF850RGJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF850RGJ/@@download/ENCFF850RGJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF850RGJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 986265a2e40c88d9a7815a58eefb8b7f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003380,GEO:GSM1003610;Project=ENCODE system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ZC3H11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFR] [Life stage: Adult]
NGENC2AOGWAI4T Download track ENCODE SU-DHL-6 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR587FCM] [Life stage: Adult]
Show metadata Identifier NGENC2AOGWAI4T Data Source ENCODE Download track Download Number of intervals 21,648 bp covered 16,579,913 Output type pseudoreplicated peaks Genome build hg38 cell type SU-DHL-6 Biosample type Cell line Biosamples term id EFO:0002357 Tissue category Blood ENCODE Experiment id ENCSR587FCM Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 510,957 Downloaded date 06/12/2022 Release date 11/13/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF412NPE.bed.gz Processed file md5 fbf51392d6f3c119baf6f9b8dc6a1b8e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF412NPE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF412NPE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF412NPE/@@download/ENCFF412NPE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF412NPE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 363249d82a78e95be4226e991ed843ff Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens SU-DHL-6;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 43 years;Reference=PMID:32728046;External_resources=GEO:GSE86724;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11;Submitted_track_name=pool system category Cardiovascular life stage Adult trackName ENCODE SU-DHL-6 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR587FCM] [Life stage: Adult]
NGENC2AOWCRFZV Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF816 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR905BNO] [Life stage: Child]
Show metadata Identifier NGENC2AOWCRFZV Data Source ENCODE Download track Download Number of intervals 13,982 bp covered 10,101,659 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR905BNO Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF816 Assay TF ChIP-seq File format bed narrowPeak File size 279,923 Downloaded date 06/12/2022 Release date 01/01/2022 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294VPD.bed.gz Processed file md5 b9c2a8c13fcf1ccc02d70404527b9cbb wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294VPD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294VPD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF294VPD/@@download/ENCFF294VPD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF294VPD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d01d8e14489acca90b61dfbf1837a5f0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE208799;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZNF816 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR905BNO] [Life stage: Child]
NGENC2AP4FORPJ Download track ENCODE ES-I3 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR844DRI] [Life stage: Embryonic]
Show metadata Identifier NGENC2AP4FORPJ Data Source ENCODE Download track Download Number of intervals 38,388 bp covered 15,935,541 Output type pseudoreplicated peaks Genome build hg38 cell type ES-I3 Biosample type Stem cell Biosamples term id EFO:0007076 Tissue category Embryo ENCODE Experiment id ENCSR844DRI Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 735,331 Downloaded date 06/12/2022 Release date 12/10/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz Processed file md5 5a21979b02280a00dd5c34a36b8372c0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF827QRV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF827QRV/@@download/ENCFF827QRV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF827QRV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 53447379ce99af5022da78b99013358a Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens ES-I3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM537669,GEO:GSM537672;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_track_name=rep system category Embryo life stage Embryonic trackName ENCODE ES-I3 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR844DRI] [Life stage: Embryonic]
NGENC2AP6HHGTC Download track ENCODE MCF-7 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR422SUG] [Life stage: Adult]
Show metadata Identifier NGENC2AP6HHGTC Data Source ENCODE Download track Download Number of intervals 243,257 bp covered 176,855,783 Output type replicated peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR422SUG Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 6,101,700 Downloaded date 06/12/2022 Release date 02/24/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF281PFZ.bed.gz Processed file md5 2d1533ccaaf8629407d32b5360fbe20f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF281PFZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF281PFZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF281PFZ/@@download/ENCFF281PFZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF281PFZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6e51a235badb12ccbc84016248a7f48e Data Category Accessible chromatin Genomic feature type ATAC-seq replicated peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE169929;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-05;Submitted_track_name=rep1_vs_rep2.ove system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR422SUG] [Life stage: Adult]
NGENC2APFY5VHZ Download track ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR926GDT] [Life stage: Unknown]
Show metadata Identifier NGENC2APFY5VHZ Data Source ENCODE Download track Download Number of intervals 171,558 bp covered 93,801,022 Output type pseudoreplicated peaks Genome build hg38 cell type Dendritic cell Biosample type In vitro differentiated cells Biosamples term id CL:0000451 Tissue category Blood ENCODE Experiment id ENCSR926GDT Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 4,510,351 Downloaded date 06/12/2022 Release date 04/20/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF123WIQ.bed.gz Processed file md5 ae4c1327f0065323ec16b8bf6ee3fce0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF123WIQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF123WIQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF123WIQ/@@download/ENCFF123WIQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF123WIQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 920fa7a76e6cadfae83d305a79b4ab64 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours;Lab=Manuel Garber, UMass;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE94219;Project=GGR;Award=U01HG007910;Experiment_date_released=2017-01-19;Submitted_ system category Cardiovascular life stage Unknown trackName ENCODE Dendritic cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR926GDT] [Life stage: Unknown]
NGENC2AR3I66WE Download track ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZBTB7A conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR773REP] [Life stage: Embryonic]
Show metadata Identifier NGENC2AR3I66WE Data Source ENCODE Download track Download Number of intervals 7,147 bp covered 2,431,326 Output type conservative IDR thresholded peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR773REP Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZBTB7A Assay TF ChIP-seq File format bed narrowPeak File size 142,036 Downloaded date 06/12/2022 Release date 08/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF405GZX.bed.gz Processed file md5 45b5775cef6213f2af52e4cf83c4b14d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF405GZX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF405GZX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF405GZX/@@download/ENCFF405GZX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF405GZX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 19454ad881b877a678d3f5268afb3f2a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB7A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046; system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZBTB7A conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR773REP] [Life stage: Embryonic]
NGENC2ARMLCAO2 Download track ENCODE HG02981 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR208HAP] [Life stage: Adult]
Show metadata Identifier NGENC2ARMLCAO2 Data Source ENCODE Download track Download Number of intervals 166,149 bp covered 111,016,410 Output type pseudoreplicated peaks Genome build hg38 cell type HG02981 Biosample type Cell line Biosamples term id EFO:0010859 Tissue category Blood ENCODE Experiment id ENCSR208HAP Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 4,320,841 Downloaded date 06/12/2022 Release date 01/26/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF851MGE.bed.gz Processed file md5 60e2fb4733617dbb662f1c0b35d423ff wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF851MGE.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF851MGE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF851MGE/@@download/ENCFF851MGE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF851MGE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 9554da9f2e15f46ef57f4bdb41ae5c40 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens HG02981;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172977;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt.nar system category Cardiovascular life stage Adult trackName ENCODE HG02981 (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR208HAP] [Life stage: Adult]
NGENC2ARQS2GCD Download track ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR770GNM] [Life stage: Adult]
Show metadata Identifier NGENC2ARQS2GCD Data Source ENCODE Download track Download Number of intervals 39,838 bp covered 35,515,863 Output type pseudoreplicated peaks Genome build hg38 cell type Mucosa Biosample type Tissue Biosamples term id UBERON:0000344 Tissue category Digestive ENCODE Experiment id ENCSR770GNM Biological replicate(s) 1 Technical replicate 1_4 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 843,834 Downloaded date 06/12/2022 Release date 01/29/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz Processed file md5 da56d4b9f520db2ebf18c4f0df17a95c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF477WBO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF477WBO/@@download/ENCFF477WBO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF477WBO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 71cc42078c37ea9c7657cb3bce3f2522 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens mucosa of stomach tissue male adult (59 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 59 years;Reference=PMID:32728046;External_resources=GEO:GSM772969;Project=Roadmap;Award=U01ES017155;Experi system category Digestive life stage Adult trackName ENCODE Mucosa (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR770GNM] [Life stage: Adult]
NGENC2ASLB6ZEN Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ZNF512 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591CCL] [Life stage: Adult]
Show metadata Identifier NGENC2ASLB6ZEN Data Source ENCODE Download track Download Number of intervals 22,842 bp covered 14,501,541 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR591CCL Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF512 Assay TF ChIP-seq File format bed narrowPeak File size 432,132 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF601EMZ.bed.gz Processed file md5 7584b95c40b094570e710cd2c6703e90 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF601EMZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF601EMZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF601EMZ/@@download/ENCFF601EMZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF601EMZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cfa4d6a76ca9d0e6bb17f1c992a014ce Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 stably expressing ZNF512;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR591CCL,GEO:GSE91898;Proje system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ZNF512 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR591CCL] [Life stage: Adult]
NGENC2ATDSY6XN Download track ENCODE WTC11 (repl. 1, 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426WZU] [Life stage: Adult]
Show metadata Identifier NGENC2ATDSY6XN Data Source ENCODE Download track Download Number of intervals 110 bp covered 28,282 Output type IDR thresholded peaks Genome build hg38 cell type WTC11 Biosample type Cell line Biosamples term id EFO:0009747 Tissue category Skin ENCODE Experiment id ENCSR426WZU Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody EGR1 Assay TF ChIP-seq File format bed narrowPeak File size 2,538 Downloaded date 07/10/2025 Release date 08/12/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF709WYC.bed.gz Processed file md5 3b4b6dcba46315b798b4fe71b15128bc wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF709WYC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF709WYC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF709WYC/@@download/ENCFF709WYC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF709WYC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 afc2156b88a1f5ba8a92796061b5c553 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_reso system category Integumentary life stage Adult trackName ENCODE WTC11 (repl. 1, 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426WZU] [Life stage: Adult]
NGENC2AX23RYAD Download track ENCODE Cingulate gyrus (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR059ETS] [Life stage: Adult]
Show metadata Identifier NGENC2AX23RYAD Data Source ENCODE Download track Download Number of intervals 1,016,913 bp covered 10,129,178 Output type footprints Genome build hg38 cell type Cingulate gyrus Biosample type Tissue Biosamples term id UBERON:0002967 Tissue category Brain ENCODE Experiment id ENCSR059ETS Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 6,904,906 Downloaded date 06/12/2022 Release date 08/30/2021 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF867XKB.bed.gz Processed file md5 18f55bbcc35efb0e446f11d8c0d6b626 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF867XKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF867XKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF867XKB/@@download/ENCFF867XKB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF867XKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7e2932a38a912883fb1337168b69d21c Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens posterior cingulate gyrus tissue female adult (85 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 85 years;Reference=NR;External_resources=GEO:GSE187219;Project=ENCODE;Award=UM1HG009444;Experiment_da system category Nervous life stage Adult trackName ENCODE Cingulate gyrus (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR059ETS] [Life stage: Adult]
NGENC2AXYUALKW Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq RXRB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR560SEP] [Life stage: Child]
Show metadata Identifier NGENC2AXYUALKW Data Source ENCODE Download track Download Number of intervals 41,785 bp covered 14,483,386 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR560SEP Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody RXRB Assay TF ChIP-seq File format bed narrowPeak File size 722,656 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539ZAY.bed.gz Processed file md5 45f159fef368434c5ecc95ccd36a610e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539ZAY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF539ZAY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF539ZAY/@@download/ENCFF539ZAY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF539ZAY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ffffd5df6a1143fec580d43b5863a446 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRB;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=child 15 years;Reference=PMID:32728244;Ex system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq RXRB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR560SEP] [Life stage: Child]
NGENC2AZIDKRQL Download track ENCODE SK-N-SH (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000ELQ] [Life stage: Child]
Show metadata Identifier NGENC2AZIDKRQL Data Source ENCODE Download track Download Number of intervals 232,038 bp covered 47,465,749 Output type peaks pValue=0.05 Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR000ELQ Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,594,452 Downloaded date 06/12/2022 Release date 11/22/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF642DXD.bed.gz Processed file md5 44fdb17b7687d6bdada5a940d8f5a97c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF642DXD.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF642DXD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF642DXD/@@download/ENCFF642DXD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF642DXD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bed2f157bab32c8c928aca16bd2e0478 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens SK-N-SH;Lab=Gregory Crawford, Duke;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSM1008585,UCSC-ENCODE-hg19:wgEncodeEH003483;Project=ENCODE;Aw system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000ELQ] [Life stage: Child]
NGENC2B4RIK4TC Download track ENCODE HepG2 (repl. 2) eCLIP DKC1 peaks (narrowPeak) [Experiment: ENCSR301TFY] [Life stage: Child]
Show metadata Identifier NGENC2B4RIK4TC Data Source ENCODE Download track Download Number of intervals 12,580 bp covered 621,031 Output type peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR301TFY Biological replicate(s) 2 Technical replicate 2_1 Antibody DKC1 Assay eCLIP File format bed narrowPeak File size 238,405 Downloaded date 06/04/2018 Release date 12/03/2016 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF507TSG.bed.gz Processed file md5 461147dc4892f77937321db4dd2590f8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF507TSG.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF507TSG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF507TSG/@@download/ENCFF507TSG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF507TSG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2d730a50c833c0aa46cd54f69e2835bb Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:DKC1,GEO:GSE91645;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=544_02.base system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) eCLIP DKC1 peaks (narrowPeak) [Experiment: ENCSR301TFY] [Life stage: Child]
NGENC2B4VTU4OV Download track ENCODE UCSF-4 (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR656PGJ] [Life stage: Embryonic]
Show metadata Identifier NGENC2B4VTU4OV Data Source ENCODE Download track Download Number of intervals 22,806 bp covered 10,582,151 Output type pseudoreplicated peaks Genome build hg38 cell type UCSF-4 Biosample type Stem cell Biosamples term id EFO:0007116 Tissue category Embryo ENCODE Experiment id ENCSR656PGJ Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 502,739 Downloaded date 06/12/2022 Release date 01/29/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF563XGA.bed.gz Processed file md5 b9a932142f9aeef6d4c14caf847b0b1a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF563XGA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF563XGA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF563XGA/@@download/ENCFF563XGA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF563XGA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 78cb14abf1fce5d5635cc3e2a53e5bd9 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens UCSF-4;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ccre_inputv2,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=SCREEN-GRCh38:UCSF-4;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR;E system category Embryo life stage Embryonic trackName ENCODE UCSF-4 (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR656PGJ] [Life stage: Embryonic]
NGENC2B5SVE5Z6 Download track ENCODE HCT116 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR671ITY] [Life stage: Adult]
Show metadata Identifier NGENC2B5SVE5Z6 Data Source ENCODE Download track Download Number of intervals 58,132 bp covered 26,228,271 Output type IDR thresholded peaks Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id ENCSR671ITY Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 988,459 Downloaded date 07/10/2025 Release date 07/20/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz Processed file md5 a863c71bd84159dd57a8f30ea4d750d0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF087TIR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF087TIR/@@download/ENCFF087TIR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF087TIR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 497b99998bb27016aae135de2f6f4da6 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,De system category Digestive life stage Adult trackName ENCODE HCT116 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR671ITY] [Life stage: Adult]
NGENC2B5Z3BXVV Download track ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR509MYW] [Life stage: Adult]
Show metadata Identifier NGENC2B5Z3BXVV Data Source ENCODE Download track Download Number of intervals 119,138 bp covered 59,535,644 Output type pseudoreplicated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR509MYW Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 3,071,876 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF758FJZ.bed.gz Processed file md5 49b0a16ed421c8ba5be959327bab4723 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF758FJZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF758FJZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF758FJZ/@@download/ENCFF758FJZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF758FJZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1100f07d602a9c185d312c053eb55d21 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens K562 treated with 1 μM ARS-853 for 48 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172596;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=pooled system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR509MYW] [Life stage: Adult]
NGENC2B7GIIXWJ Download track ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq E2F4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR505NMN] [Life stage: Adult]
Show metadata Identifier NGENC2B7GIIXWJ Data Source ENCODE Download track Download Number of intervals 1,152 bp covered 583,159 Output type conservative IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR505NMN Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody E2F4 Assay TF ChIP-seq File format bed narrowPeak File size 22,314 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF612MIA.bed.gz Processed file md5 4375389297a186fb18801002d864f024 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF612MIA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF612MIA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF612MIA/@@download/ENCFF612MIA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF612MIA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e44d29ed8189cbcce4776f8242b4704f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7 stably expressing E2F4;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE105536,FactorBook:ENCSR505NMN;Project= system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq E2F4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR505NMN] [Life stage: Adult]
NGENC2BHFXQ4ES Download track ENCODE HCT116 (repl. 1) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRZ] [Life stage: Adult]
Show metadata Identifier NGENC2BHFXQ4ES Data Source ENCODE Download track Download Number of intervals 8,858 bp covered 3,729,419 Output type IDR thresholded peaks Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id ENCSR000BRZ Biological replicate(s) 1 Technical replicate 1_1 Antibody EGR1 Assay TF ChIP-seq File format bed narrowPeak File size 165,302 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF726JKM.bed.gz Processed file md5 c6d4038aeda5fffb727d49a392202517 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF726JKM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF726JKM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF726JKM/@@download/ENCFF726JKM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF726JKM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1323f8066cd2e19062635ab6f8c9bf09 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HCT116;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSM1010846,UCSC-ENCODE-hg19:wgEncodeEH003215,FactorBook:ENCSR000BRZ;Project=ENCODE;Award=U5 system category Digestive life stage Adult trackName ENCODE HCT116 (repl. 1) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRZ] [Life stage: Adult]
NGENC2BHP7WWLX Download track ENCODE Natural killer cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR277YKG] [Life stage: Unknown]
Show metadata Identifier NGENC2BHP7WWLX Data Source ENCODE Download track Download Number of intervals 132,916 bp covered 218,205,726 Output type pseudoreplicated peaks Genome build hg38 cell type Natural killer cell Biosample type Primary cell Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id ENCSR277YKG Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 3,838,911 Downloaded date 06/12/2022 Release date 05/05/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF692OOA.bed.gz Processed file md5 a32e79917607df7ae34543f38bc523ca wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF692OOA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF692OOA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF692OOA/@@download/ENCFF692OOA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF692OOA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 11f6593a688a4cc57d0613a1c3b105b7 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens immature natural killer cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE176963;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-02,2020-08-04;Submitted_track_name=rep1-pr1_ system category Cardiovascular life stage Unknown trackName ENCODE Natural killer cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR277YKG] [Life stage: Unknown]
NGENC2BJ3NHR4S Download track ENCODE HeLa-S3 (repl. 1, 2) Histone ChIP-seq H3K9ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AOH] [Life stage: Adult]
Show metadata Identifier NGENC2BJ3NHR4S Data Source ENCODE Download track Download Number of intervals 32,066 bp covered 44,051,140 Output type pseudoreplicated peaks Genome build hg38 cell type HeLa-S3 Biosample type Cell line Biosamples term id EFO:0002791 Tissue category Female Reproductive ENCODE Experiment id ENCSR000AOH Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9ac Assay Histone ChIP-seq File format bed narrowPeak File size 883,238 Downloaded date 06/12/2022 Release date 11/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF259OWO.bed.gz Processed file md5 11cb4e9a72fbc2d42445be0e40a95fa8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF259OWO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF259OWO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF259OWO/@@download/ENCFF259OWO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF259OWO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 229911cbdaba8c390be6d27fb367481e Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens HeLa-S3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=GEO:GSM733756,UCSC-ENCODE-hg19:wgEncodeEH001019;Project=ENCODE;Award=U54HG004570;Experiment_date_released=20 system category Reproductive life stage Adult trackName ENCODE HeLa-S3 (repl. 1, 2) Histone ChIP-seq H3K9ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AOH] [Life stage: Adult]
NGENC2BK7IVMFF Download track ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult]
Show metadata Identifier NGENC2BK7IVMFF Data Source ENCODE Download track Download Number of intervals 82,865 bp covered 71,992,007 Output type conservative IDR thresholded peaks Genome build hg38 cell type Natural killer cell Biosample type Primary cell Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id ENCSR808HWS Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,861,736 Downloaded date 06/12/2022 Release date 08/31/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034QQU.bed.gz Processed file md5 86b690848103a7fb189cefb348030256 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034QQU.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034QQU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF034QQU/@@download/ENCFF034QQU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF034QQU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 3b54969e7e7b0aa78724411a514e2862 Data Category Accessible chromatin Genomic feature type ATAC-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;E system category Cardiovascular life stage Adult trackName ENCODE Natural killer cell (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult]
NGENC2BLQVJOOC Download track ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark peaks (narrowPeak) [Experiment: ENCSR992WXP] [Life stage: Unknown]
Show metadata Identifier NGENC2BLQVJOOC Data Source ENCODE Download track Download Number of intervals 71,074 bp covered 107,095,603 Output type peaks Genome build hg38 cell type BLaER1 Biosample type Cell line Biosamples term id EFO:0030018 Tissue category Blood ENCODE Experiment id ENCSR992WXP Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,566,619 Downloaded date 06/12/2022 Release date 01/27/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz Processed file md5 8a5e51b93f597dec9d6fabfab29fbd92 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF167MPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF167MPX/@@download/ENCFF167MPX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF167MPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b499c220f34d855d75dc1fdb2ecc0d9e Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 peaks Track Description Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE259056;Project=community;Award=ERC-2011-AdG- system category Cardiovascular life stage Unknown trackName ENCODE BLaER1 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark peaks (narrowPeak) [Experiment: ENCSR992WXP] [Life stage: Unknown]
NGENC2BMUVRBYF Download track ENCODE A549 (repl. 2) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR673OGC] [Life stage: Adult]
Show metadata Identifier NGENC2BMUVRBYF Data Source ENCODE Download track Download Number of intervals 7,754 bp covered 3,639,169 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR673OGC Biological replicate(s) 2 Technical replicate 2_1 Antibody BCL3 Assay TF ChIP-seq File format bed narrowPeak File size 132,241 Downloaded date 07/10/2025 Release date 12/31/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz Processed file md5 86e28876c3634006804607a03bc16aca wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF528HPV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF528HPV/@@download/ENCFF528HPV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF528HPV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 91b4f231ef629fea227eda07eb70196a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR673OGC,GEO:GSE91314;Project=GGR;Award=U01HG007900;Experime system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) TF ChIP-seq BCL3 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR673OGC] [Life stage: Adult]
NGENC2BO7OY4IY Download track ENCODE Coronary artery (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR343ZOV] [Life stage: Adult]
Show metadata Identifier NGENC2BO7OY4IY Data Source ENCODE Download track Download Number of intervals 36,855 bp covered 58,463,458 Output type pseudoreplicated peaks Genome build hg38 cell type Coronary artery Biosample type Tissue Biosamples term id UBERON:0001621 Tissue category Blood Vessel ENCODE Experiment id ENCSR343ZOV Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,042,564 Downloaded date 06/12/2022 Release date 10/10/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751XDR.bed.gz Processed file md5 1d610aec83c8e51d1fee2e8f67a60fb5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751XDR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF751XDR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF751XDR/@@download/ENCFF751XDR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF751XDR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d2bde7642afb654853c31a13a4f71471 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens coronary artery tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENTEx,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96128,SCREEN-GR system category Cardiovascular life stage Adult trackName ENCODE Coronary artery (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR343ZOV] [Life stage: Adult]
NGENC2BPF5MHCC Download track ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K4ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR039ZLS] [Life stage: Embryonic]
Show metadata Identifier NGENC2BPF5MHCC Data Source ENCODE Download track Download Number of intervals 176,656 bp covered 88,752,596 Output type replicated peaks Genome build hg38 cell type IMR-90 Biosample type Cell line Biosamples term id EFO:0001196 Tissue category Lung ENCODE Experiment id ENCSR039ZLS Biological replicate(s) 1, 2 Technical replicate 1_2, 2_2 Antibody H3K4ac Assay Histone ChIP-seq File format bed narrowPeak File size 4,736,764 Downloaded date 06/12/2022 Release date 11/20/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039FXP.bed.gz Processed file md5 969035e7e02d61e5e850699319cb3db2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039FXP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF039FXP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF039FXP/@@download/ENCFF039FXP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF039FXP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bea96fbf24c14267fd151fc9b95c859e Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4ac replicated peaks Track Description Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM521894,GEO:GSM521893;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=rep1_vs system category Respiratory life stage Embryonic trackName ENCODE IMR-90 (repl. 1, 2) Histone ChIP-seq H3K4ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR039ZLS] [Life stage: Embryonic]
NGENC2BQTKFEHG Download track ENCODE WTC11 (repl. 2) TF ChIP-seq JUN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR804OBA] [Life stage: Adult]
Show metadata Identifier NGENC2BQTKFEHG Data Source ENCODE Download track Download Number of intervals 1,927 bp covered 761,743 Output type IDR thresholded peaks Genome build hg38 cell type WTC11 Biosample type Cell line Biosamples term id EFO:0009747 Tissue category Skin ENCODE Experiment id ENCSR804OBA Biological replicate(s) 2 Technical replicate 2_1 Antibody JUN Assay TF ChIP-seq File format bed narrowPeak File size 38,522 Downloaded date 07/10/2025 Release date 07/23/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF932RPV.bed.gz Processed file md5 d9b7ffddfcd5bfca2bbfa0de4dfa3790 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF932RPV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF932RPV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF932RPV/@@download/ENCFF932RPV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF932RPV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 014c39f60dfbbff4cb9c9d3c9f279068 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens JUN;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231009;Project=ENCODE;Award=UM1HG009411;Experiment_date_release system category Integumentary life stage Adult trackName ENCODE WTC11 (repl. 2) TF ChIP-seq JUN IDR thresholded peaks (narrowPeak) [Experiment: ENCSR804OBA] [Life stage: Adult]
NGENC2BRKYJTDY Download track ENCODE Skeletal muscle tissue (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR836GCA] [Life stage: Unknown]
Show metadata Identifier NGENC2BRKYJTDY Data Source ENCODE Download track Download Number of intervals 157,560 bp covered 93,055,270 Output type pseudoreplicated peaks Genome build hg38 cell type Skeletal muscle tissue Biosample type Tissue Biosamples term id UBERON:0001134 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR836GCA Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 3,338,763 Downloaded date 06/12/2022 Release date 01/29/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz Processed file md5 2a5ea5676b8565d4fa2c865bee5c3123 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF771NBZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF771NBZ/@@download/ENCFF771NBZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF771NBZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 04505688f02e9c0f0c3210158303a2f7 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens skeletal muscle tissue tissue;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM621644;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Submitted_trac system category Muscular life stage Unknown trackName ENCODE Skeletal muscle tissue (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR836GCA] [Life stage: Unknown]
NGENC2BS6TARW3 Download track ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR299LSN] [Life stage: Adult]
Show metadata Identifier NGENC2BS6TARW3 Data Source ENCODE Download track Download Number of intervals 69,623 bp covered 62,582,258 Output type IDR thresholded peaks Genome build hg38 cell type T-cell Biosample type Primary cell Biosamples term id CL:0000084 Tissue category Immune ENCODE Experiment id ENCSR299LSN Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,547,214 Downloaded date 06/12/2022 Release date 06/21/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF545VUW.bed.gz Processed file md5 f9f0ca8a41d8cb3db888aa71325d1647 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF545VUW.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF545VUW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF545VUW/@@download/ENCFF545VUW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF545VUW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 3f4b52886cfcb37c35b00b1825450c8e Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens T-cell male adult (42 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187379;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-06-24;Submitted_track_name=rep1-pr1_ system category Lymphatic life stage Adult trackName ENCODE T-cell (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR299LSN] [Life stage: Adult]
NGENC2BSMWP5LR Download track ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR709GBY] [Life stage: Adult]
Show metadata Identifier NGENC2BSMWP5LR Data Source ENCODE Download track Download Number of intervals 156,876 bp covered 118,159,924 Output type pseudoreplicated peaks Genome build hg38 cell type Naive thymus-derived CD8+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id ENCSR709GBY Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27ac Assay Mint-ChIP-seq File format bed narrowPeak File size 3,995,895 Downloaded date 06/12/2022 Release date 05/06/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF795FEU.bed.gz Processed file md5 eda6ef667f64501f0c743807018a8d6b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF795FEU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF795FEU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF795FEU/@@download/ENCFF795FEU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF795FEU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 478870ccea8999fe202bafe403e698a4 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE177506;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05 system category Cardiovascular life stage Adult trackName ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR709GBY] [Life stage: Adult]
NGENC2BWTQWCL6 Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq BCL3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR304NTV] [Life stage: Child]
Show metadata Identifier NGENC2BWTQWCL6 Data Source ENCODE Download track Download Number of intervals 14,630 bp covered 8,735,502 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR304NTV Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody BCL3 Assay TF ChIP-seq File format bed narrowPeak File size 291,934 Downloaded date 06/12/2022 Release date 08/22/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz Processed file md5 918e95b558457d3c9e8b29dbfe47f6d5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF235AQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF235AQM/@@download/ENCFF235AQM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF235AQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 43237a9625e0c21308d33b2751d079a2 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170286;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq BCL3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR304NTV] [Life stage: Child]
NGENC2BXXXIJPK Download track ENCODE K562 (repl. 2) TF ChIP-seq TCF12 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744WOO] [Life stage: Adult]
Show metadata Identifier NGENC2BXXXIJPK Data Source ENCODE Download track Download Number of intervals 15,885 bp covered 4,669,101 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR744WOO Biological replicate(s) 2 Technical replicate 2_1 Antibody TCF12 Assay TF ChIP-seq File format bed narrowPeak File size 309,408 Downloaded date 06/12/2022 Release date 12/02/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF639QES.bed.gz Processed file md5 61381c24f94d04803b8f01ecc7d7a3ba wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF639QES.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF639QES.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF639QES/@@download/ENCFF639QES.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF639QES.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 99915628b9e579578ee15cbb2e7c0569 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=FactorBook:ENCSR744WOO,GEO:GSE105952;Proje system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq TCF12 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744WOO] [Life stage: Adult]
NGENC2C3OTH2CK Download track ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR873VJA] [Life stage: Adult]
Show metadata Identifier NGENC2C3OTH2CK Data Source ENCODE Download track Download Number of intervals 45,267 bp covered 36,598,176 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR873VJA Biological replicate(s) 2, 3 Technical replicate 2_1, 3_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,006,309 Downloaded date 07/10/2025 Release date 11/12/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF698XDW.bed.gz Processed file md5 0b39d6fcf5011e8f423eb8755e85a5ee wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF698XDW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF698XDW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF698XDW/@@download/ENCFF698XDW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF698XDW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 78230d2e0dfcf67dff190364e56e8195 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91348;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=re system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR873VJA] [Life stage: Adult]
NGENC2C52K7HLF Download track ENCODE Large intestine (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR133SPH] [Life stage: Embryonic]
Show metadata Identifier NGENC2C52K7HLF Data Source ENCODE Download track Download Number of intervals 56,281 bp covered 9,906,090 Output type peaks pValue=0.001 Genome build hg38 cell type Large intestine Biosample type Tissue Biosamples term id UBERON:0000059 Tissue category Digestive ENCODE Experiment id ENCSR133SPH Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 625,928 Downloaded date 06/12/2022 Release date 11/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF836WEE.bed.gz Processed file md5 46277150da5674f933589e809b70bf8b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF836WEE.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF836WEE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF836WEE/@@download/ENCFF836WEE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF836WEE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bef089b72fb28a727635f17ef8d1716e Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens large intestine tissue female embryo (120 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 120 days;Reference=PMID:327 system category Digestive life stage Embryonic trackName ENCODE Large intestine (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR133SPH] [Life stage: Embryonic]
NGENC2CCPWRIGH Download track ENCODE K562 (repl. 1) TF ChIP-seq STAT6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR338UQU] [Life stage: Adult]
Show metadata Identifier NGENC2CCPWRIGH Data Source ENCODE Download track Download Number of intervals 2,218 bp covered 789,455 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR338UQU Biological replicate(s) 1 Technical replicate 1_1 Antibody STAT6 Assay TF ChIP-seq File format bed narrowPeak File size 40,717 Downloaded date 07/10/2025 Release date 12/19/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF707AZM.bed.gz Processed file md5 c6485a6b12ee3146a90b434e042d79db wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF707AZM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF707AZM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF707AZM/@@download/ENCFF707AZM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF707AZM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 124af0af3533de58b2efbb1ebcfd622e Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231007;Project=ENCODE;Award=UM1HG009411;Experiment_date_releas system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq STAT6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR338UQU] [Life stage: Adult]
NGENC2CFFGJ56I Download track ENCODE Adrenal gland (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR741FVM] [Life stage: Adult]
Show metadata Identifier NGENC2CFFGJ56I Data Source ENCODE Download track Download Number of intervals 46,643,810 bp covered 46,643,810 Output type methylation state at CpG Genome build hg38 cell type Adrenal gland Biosample type Tissue Biosamples term id UBERON:0002369 Tissue category Endocrine ENCODE Experiment id ENCSR741FVM Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 601,644,407 Downloaded date 06/12/2022 Release date 03/09/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF033ENV.bed.gz Processed file md5 5253357d7da598a6ca72abeec08430ec wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF033ENV.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF033ENV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF033ENV/@@download/ENCFF033ENV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF033ENV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1188ad5c34e05cedaf55d1b6390f8dc6 Data Category Methylation Genomic feature type WGB-Seq methylation state at CpG Track Description Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE127311;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2017-12-04;Submitted_tra system category Endocrine life stage Adult trackName ENCODE Adrenal gland (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR741FVM] [Life stage: Adult]
NGENC2CGYDEUUB Download track ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZNF214 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993DED] [Life stage: Embryonic]
Show metadata Identifier NGENC2CGYDEUUB Data Source ENCODE Download track Download Number of intervals 1,177 bp covered 385,440 Output type IDR thresholded peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR993DED Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF214 Assay TF ChIP-seq File format bed narrowPeak File size 24,233 Downloaded date 06/12/2022 Release date 08/07/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF436CTX.bed.gz Processed file md5 605dcc85a19e180a7065d705b698e68e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF436CTX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF436CTX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF436CTX/@@download/ENCFF436CTX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF436CTX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fb28eef9380e77da443b5562b303f17a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_re system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 1, 2) TF ChIP-seq ZNF214 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR993DED] [Life stage: Embryonic]
NGENC2CHTYGTWD Download track ENCODE A549 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR035OXA] [Life stage: Adult]
Show metadata Identifier NGENC2CHTYGTWD Data Source ENCODE Download track Download Number of intervals 38,569 bp covered 14,976,485 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR035OXA Biological replicate(s) 2 Technical replicate 2_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 676,095 Downloaded date 06/12/2022 Release date 10/02/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz Processed file md5 d2242f127fe568e490dabdeab83db746 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF083MPX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF083MPX/@@download/ENCFF083MPX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF083MPX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 9902592f5190eb670a3f54f891047c2b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR035OXA,GEO:GSE92782;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=rep2-pr1 system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR035OXA] [Life stage: Adult]
NGENC2CIUY45UG Download track ENCODE WI38 (repl. 2) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EQN] [Life stage: Unknown]
Show metadata Identifier NGENC2CIUY45UG Data Source ENCODE Download track Download Number of intervals 88,024 bp covered 15,646,707 Output type peaks pValue=0.05 Genome build hg38 cell type WI38 Biosample type Cell line Biosamples term id EFO:0001260 Tissue category Lung ENCODE Experiment id ENCSR000EQN Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 945,930 Downloaded date 06/12/2022 Release date 11/12/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF004YHN.bed.gz Processed file md5 7f8c340ef819da3d5f629bcb650c30cf wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF004YHN.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF004YHN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF004YHN/@@download/ENCFF004YHN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF004YHN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f62422a80f1e1c039b4dcdf056607c19 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens WI38 stably expressing RAF1;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,ccre_inputv2,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728217;External_resources=GEO:GSM7366 system category Respiratory life stage Unknown trackName ENCODE WI38 (repl. 2) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EQN] [Life stage: Unknown]
NGENC2CJNZO6RN Download track ENCODE Lung (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR702DPD] [Life stage: Adult]
Show metadata Identifier NGENC2CJNZO6RN Data Source ENCODE Download track Download Number of intervals 294,983 bp covered 3,716,754 Output type footprints Genome build hg38 cell type Lung Biosample type Tissue Biosamples term id UBERON:0002048 Tissue category Lung ENCODE Experiment id ENCSR702DPD Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,997,770 Downloaded date 06/12/2022 Release date 10/06/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF386WKD.bed.gz Processed file md5 29d865700ce0873b5c2cd14f4c1f2611 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF386WKD.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF386WKD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF386WKD/@@download/ENCFF386WKD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF386WKD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 be2f90c20bb92897246a9351c781bab0 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE169777;Project=ENCODE;Award=UM1HG009444;Experiment_date_ system category Respiratory life stage Adult trackName ENCODE Lung (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR702DPD] [Life stage: Adult]
NGENC2CJO5JNBK Download track ENCODE Chondrocyte (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR117SLI] [Life stage: Embryonic]
Show metadata Identifier NGENC2CJO5JNBK Data Source ENCODE Download track Download Number of intervals 245,228 bp covered 243,560,218 Output type replicated peaks Genome build hg38 cell type Chondrocyte Biosample type In vitro differentiated cells Biosamples term id CL:0000138 Tissue category Bone ENCODE Experiment id ENCSR117SLI Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1, 2_2 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 7,184,390 Downloaded date 06/12/2022 Release date 09/16/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF375EBK.bed.gz Processed file md5 b9c21aeb62f846fdf8ddc37a022fb94f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF375EBK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF375EBK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF375EBK/@@download/ENCFF375EBK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF375EBK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d346a0d02c3caa92d6287c4d418c0462 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 replicated peaks Track Description Biosample_summary=Homo sapiens chondrocyte;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE187055;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-27,2021-04-28;Submitted_track_name=rep1_vs_rep2.overlap.bfil system category Skeletal life stage Embryonic trackName ENCODE Chondrocyte (repl. 1, 2) Mint-ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR117SLI] [Life stage: Embryonic]
NGENC2CLTDENMS Download track ENCODE Osteoblast (repl. 1, 2) Histone ChIP-seq H3K79me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ASG] [Life stage: Unknown]
Show metadata Identifier NGENC2CLTDENMS Data Source ENCODE Download track Download Number of intervals 148,539 bp covered 155,753,734 Output type pseudoreplicated peaks Genome build hg38 cell type Osteoblast Biosample type Primary cell Biosamples term id CL:0000062 Tissue category Bone ENCODE Experiment id ENCSR000ASG Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K79me2 Assay Histone ChIP-seq File format bed narrowPeak File size 3,746,675 Downloaded date 06/12/2022 Release date 11/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF270VQV.bed.gz Processed file md5 098fc0c69da2902b5011c4f98fc2e51f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF270VQV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF270VQV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF270VQV/@@download/ENCFF270VQV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF270VQV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1ddf3ad90a4db93f7f1709aa462ea850 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K79me2 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens osteoblast;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002440,GEO:GSM1003502;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-03-06 system category Skeletal life stage Unknown trackName ENCODE Osteoblast (repl. 1, 2) Histone ChIP-seq H3K79me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ASG] [Life stage: Unknown]
NGENC2CLUZ3ZUR Download track ENCODE MCF-7 (repl. 2) TF ChIP-seq E2F8 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR897ZXU] [Life stage: Adult]
Show metadata Identifier NGENC2CLUZ3ZUR Data Source ENCODE Download track Download Number of intervals 594 bp covered 206,215 Output type IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR897ZXU Biological replicate(s) 2 Technical replicate 2_1 Antibody E2F8 Assay TF ChIP-seq File format bed narrowPeak File size 11,875 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512AJF.bed.gz Processed file md5 56eacabdbda81bfac6971c4b1bc611e3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512AJF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF512AJF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF512AJF/@@download/ENCFF512AJF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF512AJF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 10270cbda9923d504afad8f53adcb2b8 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE127615,FactorBook:ENCSR897ZXU;Project=ENCODE;Award=U54HG006996;Experi system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 2) TF ChIP-seq E2F8 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR897ZXU] [Life stage: Adult]
NGENC2CNBZ2HCT Download track ENCODE Spleen (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR946OIO] [Life stage: Adult]
Show metadata Identifier NGENC2CNBZ2HCT Data Source ENCODE Download track Download Number of intervals 280,813 bp covered 2,987,723 Output type footprints Genome build hg38 cell type Spleen Biosample type Tissue Biosamples term id UBERON:0002106 Tissue category Immune Organ ENCODE Experiment id ENCSR946OIO Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,912,008 Downloaded date 06/12/2022 Release date 09/28/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF138TPA.bed.gz Processed file md5 230acd7d430615b1fa4054bf9dea5937 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF138TPA.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF138TPA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF138TPA/@@download/ENCFF138TPA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF138TPA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1ab39a5369c5defbc35e51aac5c2e258 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens spleen tissue female adult (59 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 59 years;Reference=NR;External_resources=GEO:GSE170736;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-02;Sub system category Lymphatic life stage Adult trackName ENCODE Spleen (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR946OIO] [Life stage: Adult]
NGENC2CPJTULZS Download track ENCODE K562 (repl. 1) eCLIP RPS10 peaks (narrowPeak) [Experiment: ENCSR937RSF] [Life stage: Adult]
Show metadata Identifier NGENC2CPJTULZS Data Source ENCODE Download track Download Number of intervals 2,883 bp covered 260,968 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR937RSF Biological replicate(s) 1 Technical replicate 1_1 Antibody RPS10 Assay eCLIP File format bed narrowPeak File size 52,796 Downloaded date 05/15/2024 Release date 01/13/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF528GKU.bed.gz Processed file md5 35df4623b29cb68d0c3c9b4a53a20303 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF528GKU.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF528GKU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF528GKU/@@download/ENCFF528GKU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF528GKU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 23132d1414b6fcab0c05256bc008d522 Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284967;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch18.4104_CLIP1_CLIP.umi.r1.fq.genome-ma system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) eCLIP RPS10 peaks (narrowPeak) [Experiment: ENCSR937RSF] [Life stage: Adult]