NGENC273E6LOSJ Download track ENCODE Peyers patch (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR689DSM] [Life stage: Adult]
Show metadata Identifier NGENC273E6LOSJ Data Source ENCODE Download track Download Number of intervals 187,383 bp covered 37,437,761 Output type peaks pValue=0.001 Genome build hg38 cell type Peyers patch Biosample type Tissue Biosamples term id UBERON:0001211 Tissue category Immune ENCODE Experiment id ENCSR689DSM Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,071,721 Downloaded date 06/12/2022 Release date 10/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF098CGH.bed.gz Processed file md5 35ea70a7bfbcdce9dbbdd9c8f26ada1d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF098CGH.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF098CGH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF098CGH/@@download/ENCFF098CGH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF098CGH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 69915e8869dc8ab6e3d78447b25e00dc Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170977;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2 system category Lymphatic life stage Adult trackName ENCODE Peyers patch (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR689DSM] [Life stage: Adult]
NGENC273UXYWLW Download track ENCODE A549 (repl. 1, 2) TF ChIP-seq NR3C1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHF] [Life stage: Adult]
Show metadata Identifier NGENC273UXYWLW Data Source ENCODE Download track Download Number of intervals 26,308 bp covered 7,288,069 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR000BHF Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody NR3C1 Assay TF ChIP-seq File format bed narrowPeak File size 501,056 Downloaded date 07/10/2025 Release date 02/04/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF111NKM.bed.gz Processed file md5 393785c5d8d44c7e8b9061795e644794 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF111NKM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF111NKM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF111NKM/@@download/ENCFF111NKM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF111NKM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 34ed719ebc1c5fe9a8054c4df80b4dc3 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 50 nM dexamethasone for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM803358,FactorBoo system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) TF ChIP-seq NR3C1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHF] [Life stage: Adult]
NGENC274B5DIDC Download track ENCODE A549 (repl. 1, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR074AHH] [Life stage: Adult]
Show metadata Identifier NGENC274B5DIDC Data Source ENCODE Download track Download Number of intervals 116,013 bp covered 132,253,363 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR074AHH Biological replicate(s) 1, 3 Technical replicate 1_1 ,3_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,430,175 Downloaded date 07/10/2025 Release date 09/29/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF007HBB.bed.gz Processed file md5 920ff022f3c9e70eca1efb15139b485a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF007HBB.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF007HBB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF007HBB/@@download/ENCFF007HBB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF007HBB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5191a257dca65fa7a72a8f90a9fc959c Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE114200;Project=GGR;Award=U01HG007900;Experiment_date_released=2018-04-23;Submitted_track_name=r system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 3) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR074AHH] [Life stage: Adult]
NGENC274F7U5HG Download track ENCODE Prostate gland (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR763IDK] [Life stage: Adult]
Show metadata Identifier NGENC274F7U5HG Data Source ENCODE Download track Download Number of intervals 46,433 bp covered 67,795,737 Output type pseudoreplicated peaks Genome build hg38 cell type Prostate gland Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id ENCSR763IDK Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,278,204 Downloaded date 06/12/2022 Release date 09/21/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF452EJR.bed.gz Processed file md5 031090a1fbf643d063934bf67210c1cb wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF452EJR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF452EJR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF452EJR/@@download/ENCFF452EJR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF452EJR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b3ef8762ba96aff8d652bdd97bbaffde Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ccre_inputv2,ENTEx;Life_stage_age=adult 54 years;Reference=NR;External_resources=SCREEN-GRCh38:prostate_gland_male_adult_54_years,GEO:GSE143079;Project=ENCODE;A system category Reproductive life stage Adult trackName ENCODE Prostate gland (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR763IDK] [Life stage: Adult]
NGENC275WPFI2I Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZSCAN20 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR169JRW] [Life stage: Child]
Show metadata Identifier NGENC275WPFI2I Data Source ENCODE Download track Download Number of intervals 8,922 bp covered 3,872,099 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR169JRW Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZSCAN20 Assay TF ChIP-seq File format bed narrowPeak File size 179,167 Downloaded date 06/12/2022 Release date 07/01/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF360SMH.bed.gz Processed file md5 ae65312dfcce3ced420a0478588b44ea wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF360SMH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF360SMH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF360SMH/@@download/ENCFF360SMH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF360SMH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f8e3473254e0ddd25f01978af6da96f7 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN20;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170595;Project=ENCODE;Award=UM1HG009411;Expe system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ZSCAN20 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR169JRW] [Life stage: Child]
NGENC276VFHABX Download track ENCODE DND-41 (repl. 3) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ASW] [Life stage: Child]
Show metadata Identifier NGENC276VFHABX Data Source ENCODE Download track Download Number of intervals 4,138 bp covered 2,147,835 Output type IDR thresholded peaks Genome build hg38 cell type DND-41 Biosample type Cell line Biosamples term id EFO:0007074 Tissue category Blood ENCODE Experiment id ENCSR000ASW Biological replicate(s) 3 Technical replicate 3_1 Antibody EZH2 Assay TF ChIP-seq File format bed narrowPeak File size 70,142 Downloaded date 06/12/2022 Release date 12/12/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz Processed file md5 67eb3090702fe897a6d5704f3161c1bf wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF690SMR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF690SMR/@@download/ENCFF690SMR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF690SMR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6622945a597cfa21ee3391cd8bc74adb Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003080,GEO:GSM1003522; system category Cardiovascular life stage Child trackName ENCODE DND-41 (repl. 3) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ASW] [Life stage: Child]
NGENC27744A2NO Download track ENCODE Small intestine (repl. 1) WGB-Seq methylation state at CHH (bed9+5 WGBS) [Experiment: ENCSR265ZHH] [Life stage: Child]
Show metadata Identifier NGENC27744A2NO Data Source ENCODE Download track Download Number of intervals 82,803,290 bp covered 82,803,290 Output type methylation state at CHH Genome build hg38 cell type Small intestine Biosample type Tissue Biosamples term id UBERON:0002108 Tissue category Digestive ENCODE Experiment id ENCSR265ZHH Biological replicate(s) 1 Technical replicate 1_1, 1_2, 1_3 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 1,215,368,760 Downloaded date 06/12/2022 Release date 11/09/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF431VJF.bed.gz Processed file md5 6953a524257e5cb7752ba20351522f2a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF431VJF.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF431VJF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF431VJF/@@download/ENCFF431VJF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF431VJF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 78a50e862938be9689f00f41fe6f5255 Data Category Methylation Genomic feature type WGB-Seq methylation state at CHH Track Description Biosample_summary=Homo sapiens small intestine tissue male child (3 years);Lab=Joe Ecker, Salk;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=child 3 years;Reference=NR;External_resources=GEO:GSM983646,GEO:GSM1120321;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted system category Digestive life stage Child trackName ENCODE Small intestine (repl. 1) WGB-Seq methylation state at CHH (bed9+5 WGBS) [Experiment: ENCSR265ZHH] [Life stage: Child]
NGENC277B6UM2O Download track ENCODE CD14+ monocyte (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR464ETX] [Life stage: Adult]
Show metadata Identifier NGENC277B6UM2O Data Source ENCODE Download track Download Number of intervals 123,753 bp covered 22,982,227 Output type peaks pValue=0.001 Genome build hg38 cell type CD14+ monocyte Biosample type Primary cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id ENCSR464ETX Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,440,156 Downloaded date 06/12/2022 Release date 10/05/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF645XTB.bed.gz Processed file md5 cef4cb88e06bb1373be2016f6cccb440 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF645XTB.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF645XTB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF645XTB/@@download/ENCFF645XTB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF645XTB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 66cbeb3270a8a7f88fa35a2f5e2f4332 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens CD14-positive monocyte male adult (21 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 21 years;Reference=NR;External_resources=GEO:GSE215526;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2022-06 system category Cardiovascular life stage Adult trackName ENCODE CD14+ monocyte (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR464ETX] [Life stage: Adult]
NGENC27AZA7XIW Download track ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF484 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR471VAY] [Life stage: Child]
Show metadata Identifier NGENC27AZA7XIW Data Source ENCODE Download track Download Number of intervals 1,762 bp covered 627,679 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR471VAY Biological replicate(s) 2 Technical replicate 2_1 Antibody ZNF484 Assay TF ChIP-seq File format bed narrowPeak File size 32,287 Downloaded date 06/12/2022 Release date 10/20/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF400LUM.bed.gz Processed file md5 b3eddf6b04eab6d9cd0849b920ca0a9f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF400LUM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF400LUM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF400LUM/@@download/ENCFF400LUM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF400LUM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 43905864e291d55c8856b8d81d918fa9 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF484;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170164;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF484 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR471VAY] [Life stage: Child]
NGENC27BJQF5I6 Download track ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF281 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR403MJY] [Life stage: Child]
Show metadata Identifier NGENC27BJQF5I6 Data Source ENCODE Download track Download Number of intervals 22,900 bp covered 6,953,519 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR403MJY Biological replicate(s) 2 Technical replicate 2_1 Antibody ZNF281 Assay TF ChIP-seq File format bed narrowPeak File size 389,648 Downloaded date 06/12/2022 Release date 07/01/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF738SPT.bed.gz Processed file md5 b1ce9004f83ff2551a72e133abde2112 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF738SPT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF738SPT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF738SPT/@@download/ENCFF738SPT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF738SPT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e9f1e53c4477f7a8af47a4f44675a6b4 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169793;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF281 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR403MJY] [Life stage: Child]
NGENC27C4B2WID Download track ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR787ERP] [Life stage: Adult]
Show metadata Identifier NGENC27C4B2WID Data Source ENCODE Download track Download Number of intervals 96,217 bp covered 1,224,640 Output type footprints Genome build hg38 cell type Naive thymus-derived CD4+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000895 Tissue category Blood ENCODE Experiment id ENCSR787ERP Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 650,805 Downloaded date 06/12/2022 Release date 10/02/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF793AIO.bed.gz Processed file md5 5e3228568e7518395503176e1cd72844 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF793AIO.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF793AIO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF793AIO/@@download/ENCFF793AIO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF793AIO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fb213baaa2ee12ac576fcf05578aa38a Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 25 years;Reference=NR;External_resources=GEO:GSE170091;Project=ENCODE;Award=UM1HG009444; system category Cardiovascular life stage Adult trackName ENCODE Naive thymus-derived CD4+ alpha-beta T cell (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR787ERP] [Life stage: Adult]
NGENC27DFZUWS4 Download track ENCODE 22Rv1 (repl. 2) TF ChIP-seq ZFX IDR thresholded peaks (narrowPeak) [Experiment: ENCSR246MLJ] [Life stage: Unknown]
Show metadata Identifier NGENC27DFZUWS4 Data Source ENCODE Download track Download Number of intervals 199 bp covered 113,160 Output type IDR thresholded peaks Genome build hg38 cell type 22Rv1 Biosample type Cell line Biosamples term id EFO:0002095 Tissue category Male Reproductive ENCODE Experiment id ENCSR246MLJ Biological replicate(s) 2 Technical replicate 2_1 Antibody ZFX Assay TF ChIP-seq File format bed narrowPeak File size 4,075 Downloaded date 06/12/2022 Release date 12/30/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF538ZOY.bed.gz Processed file md5 44ad261175f8409f145576e259eaf806 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF538ZOY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF538ZOY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF538ZOY/@@download/ENCFF538ZOY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF538ZOY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d62e4b3c19a25e90039660d8247e945d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens 22Rv1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE105386;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-15,2016- system category Reproductive life stage Unknown trackName ENCODE 22Rv1 (repl. 2) TF ChIP-seq ZFX IDR thresholded peaks (narrowPeak) [Experiment: ENCSR246MLJ] [Life stage: Unknown]
NGENC27GTJG5NO Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq SNAPC5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR423TVD] [Life stage: Child]
Show metadata Identifier NGENC27GTJG5NO Data Source ENCODE Download track Download Number of intervals 7,108 bp covered 3,376,714 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR423TVD Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody SNAPC5 Assay TF ChIP-seq File format bed narrowPeak File size 143,060 Downloaded date 07/10/2025 Release date 12/19/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF853IKB.bed.gz Processed file md5 d5a34a3300c1024368324b0a934bd5c3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF853IKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF853IKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF853IKB/@@download/ENCFF853IKB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF853IKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 af5e2e325b5dcecebd005f87a0326e33 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC5;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231141;Project=ENCODE;Award=UM1HG009411;Experiment_date_rele system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq SNAPC5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR423TVD] [Life stage: Child]
NGENC27IQ4T6IC Download track ENCODE A673 (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR346JWH] [Life stage: Child]
Show metadata Identifier NGENC27IQ4T6IC Data Source ENCODE Download track Download Number of intervals 258,053 bp covered 51,126,980 Output type peaks pValue=0.05 Genome build hg38 cell type A673 Biosample type Cell line Biosamples term id EFO:0002106 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR346JWH Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,906,459 Downloaded date 06/12/2022 Release date 11/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF747QAR.bed.gz Processed file md5 57e0263db0e740881740456706c311aa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF747QAR.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF747QAR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF747QAR/@@download/ENCFF747QAR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF747QAR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 9630a94014f6645a04ed451aa9ec7bd8 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens A673;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728217;External_resources=GEO:GSE90324,SCREEN-GR system category Muscular life stage Child trackName ENCODE A673 (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR346JWH] [Life stage: Child]
NGENC27JG3PVN5 Download track ENCODE K562 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR803QIE] [Life stage: Adult]
Show metadata Identifier NGENC27JG3PVN5 Data Source ENCODE Download track Download Number of intervals 45,346 bp covered 25,846,146 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR803QIE Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,095,272 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF047ZQJ.bed.gz Processed file md5 46757b8d323998cf32f2cf0d169bacc7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF047ZQJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF047ZQJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF047ZQJ/@@download/ENCFF047ZQJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF047ZQJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 413b9a5a63b22f0dcd7425aebf371600 Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 0.5 μM MB-3 for 48 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172691;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=pooled- system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR803QIE] [Life stage: Adult]
NGENC27JPBND7T Download track ENCODE iPS DF 19.11 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR383SNM] [Life stage: Newborn]
Show metadata Identifier NGENC27JPBND7T Data Source ENCODE Download track Download Number of intervals 187,755 bp covered 35,483,149 Output type peaks pValue=0.001 Genome build hg38 cell type iPS DF 19.11 Biosample type Cell line Biosamples term id EFO:0007096 Tissue category iPSC ENCODE Experiment id ENCSR383SNM Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,138,646 Downloaded date 06/12/2022 Release date 11/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF470TCA.bed.gz Processed file md5 2bae44a90c1221a5a9a9b4af09e9e5c8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF470TCA.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF470TCA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF470TCA/@@download/ENCFF470TCA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF470TCA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0ce09f1ff225bbd9275a4b86f48a5069 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens iPS DF 19.11;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=SCREEN-GRCh38:iPS_DF_19.11 system category Stem Cell life stage Newborn trackName ENCODE iPS DF 19.11 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR383SNM] [Life stage: Newborn]
NGENC27JPEE7QN Download track ENCODE T-cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR957LLW] [Life stage: Adult]
Show metadata Identifier NGENC27JPEE7QN Data Source ENCODE Download track Download Number of intervals 274,290 bp covered 172,462,396 Output type pseudoreplicated peaks Genome build hg38 cell type T-cell Biosample type Primary cell Biosamples term id CL:0000084 Tissue category Blood ENCODE Experiment id ENCSR957LLW Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 6,892,266 Downloaded date 06/12/2022 Release date 09/15/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz Processed file md5 eebf704be0d0fa8899e80dced5a27c14 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF462IJE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF462IJE/@@download/ENCFF462IJE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF462IJE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 4d7029f7835e9c87907610d6086a1142 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE188192;Proje system category Cardiovascular life stage Adult trackName ENCODE T-cell (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR957LLW] [Life stage: Adult]
NGENC27K4D6YZN Download track ENCODE Sigmoid colon (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR960AAL] [Life stage: Adult]
Show metadata Identifier NGENC27K4D6YZN Data Source ENCODE Download track Download Number of intervals 28,612 bp covered 49,106,006 Output type pseudoreplicated peaks Genome build hg38 cell type Sigmoid colon Biosample type Tissue Biosamples term id UBERON:0001159 Tissue category Digestive ENCODE Experiment id ENCSR960AAL Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 855,853 Downloaded date 06/12/2022 Release date 09/21/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748YPU.bed.gz Processed file md5 aeb3b4214f68cdf034c48140a36db222 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748YPU.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748YPU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF748YPU/@@download/ENCFF748YPU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF748YPU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 800442cccc0a066343b9fd93e375dc66 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens sigmoid colon tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE139790;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2018-12-14 system category Digestive life stage Adult trackName ENCODE Sigmoid colon (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR960AAL] [Life stage: Adult]
NGENC27L6G5B6Z Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq NFKB2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR164YJZ] [Life stage: Child]
Show metadata Identifier NGENC27L6G5B6Z Data Source ENCODE Download track Download Number of intervals 11,313 bp covered 5,938,900 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR164YJZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody NFKB2 Assay TF ChIP-seq File format bed narrowPeak File size 208,827 Downloaded date 06/12/2022 Release date 07/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904VSG.bed.gz Processed file md5 b00881f2e84ef1d29bfcc940eb49b059 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904VSG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF904VSG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF904VSG/@@download/ENCFF904VSG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF904VSG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f7ef4f594a22a0cad69499cc130f9cf3 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKB2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170557;Project=ENCODE;Award=UM1HG009411;Experi system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq NFKB2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR164YJZ] [Life stage: Child]
NGENC27LCINF5L Download track ENCODE A549 (repl. 1, 2) TF ChIP-seq TCF12 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQQ] [Life stage: Adult]
Show metadata Identifier NGENC27LCINF5L Data Source ENCODE Download track Download Number of intervals 19,363 bp covered 9,357,696 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR000BQQ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody TCF12 Assay TF ChIP-seq File format bed narrowPeak File size 347,037 Downloaded date 07/10/2025 Release date 12/27/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF522UNU.bed.gz Processed file md5 2d9df1a012e2765d3259de95918ddd58 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF522UNU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF522UNU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF522UNU/@@download/ENCFF522UNU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF522UNU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1f72b21e8bdc65d499c77cd6a07ca7bc Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:w system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) TF ChIP-seq TCF12 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQQ] [Life stage: Adult]
NGENC27MTPWXCW Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq RBPJ IDR thresholded peaks (narrowPeak) [Experiment: ENCSR740XMB] [Life stage: Adult]
Show metadata Identifier NGENC27MTPWXCW Data Source ENCODE Download track Download Number of intervals 2,182 bp covered 692,969 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR740XMB Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody RBPJ Assay TF ChIP-seq File format bed narrowPeak File size 44,038 Downloaded date 06/12/2022 Release date 07/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF607OWI.bed.gz Processed file md5 dc35c8cb6f018b8d154544cad91e4eeb wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF607OWI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF607OWI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF607OWI/@@download/ENCFF607OWI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF607OWI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 292c6248cefb58e22a463cc6d0d22347 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE177602;Project=ENCODE;Award=UM1HG009442;Exp system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq RBPJ IDR thresholded peaks (narrowPeak) [Experiment: ENCSR740XMB] [Life stage: Adult]
NGENC27N7GNHPQ Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ZNF397 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR508EEX] [Life stage: Adult]
Show metadata Identifier NGENC27N7GNHPQ Data Source ENCODE Download track Download Number of intervals 2,932 bp covered 745,440 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR508EEX Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ZNF397 Assay TF ChIP-seq File format bed narrowPeak File size 58,960 Downloaded date 06/12/2022 Release date 07/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203WSD.bed.gz Processed file md5 65a81a1e6708765b5728fb670cc0524c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203WSD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF203WSD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF203WSD/@@download/ENCFF203WSD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF203WSD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b41d71098fcd99d157e7c24e790d0e4f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF397;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170399;Project=ENCODE;Award=UM1HG009442;E system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ZNF397 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR508EEX] [Life stage: Adult]
NGENC27OGHQHJC Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq XBP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR988EVQ] [Life stage: Child]
Show metadata Identifier NGENC27OGHQHJC Data Source ENCODE Download track Download Number of intervals 3,086 bp covered 1,091,294 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR988EVQ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody XBP1 Assay TF ChIP-seq File format bed narrowPeak File size 62,521 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF999YMT.bed.gz Processed file md5 de195998bdef5590dcd6bd0bb546ea26 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF999YMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF999YMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF999YMT/@@download/ENCFF999YMT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF999YMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 dfaaeb36db580b4a5e2774f80ba5f936 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens XBP1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170859;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq XBP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR988EVQ] [Life stage: Child]
NGENC27QNK2NRG Download track ENCODE K562 (repl. 1) TF ChIP-seq CREB5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR935PEA] [Life stage: Adult]
Show metadata Identifier NGENC27QNK2NRG Data Source ENCODE Download track Download Number of intervals 1,027 bp covered 326,590 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR935PEA Biological replicate(s) 1 Technical replicate 1_1 Antibody CREB5 Assay TF ChIP-seq File format bed narrowPeak File size 20,649 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF472DYR.bed.gz Processed file md5 8ae3e561e11985d22a4aa5ea72efc70d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF472DYR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF472DYR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF472DYR/@@download/ENCFF472DYR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF472DYR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 3608d30a92cbbbf29398b4c9f03b8bcd Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CREB5;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170700;Project=ENCODE;Award=UM1HG009442;Ex system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq CREB5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR935PEA] [Life stage: Adult]
NGENC27QO23WLQ Download track ENCODE A549 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR139DGM] [Life stage: Adult]
Show metadata Identifier NGENC27QO23WLQ Data Source ENCODE Download track Download Number of intervals 22,025 bp covered 40,018,902 Output type pseudoreplicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR139DGM Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 669,112 Downloaded date 07/10/2025 Release date 10/02/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF476LRX.bed.gz Processed file md5 e6da28ad35ffc1763eafea2ee69b80fc wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF476LRX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF476LRX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF476LRX/@@download/ENCFF476LRX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF476LRX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2abb7803509fdaf5eb38ddb3e4c7e09a Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91209;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=r system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR139DGM] [Life stage: Adult]
NGENC27SHFENPI Download track ENCODE Lung (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR255SQR] [Life stage: Adult]
Show metadata Identifier NGENC27SHFENPI Data Source ENCODE Download track Download Number of intervals 33,654 bp covered 14,178,653 Output type IDR thresholded peaks Genome build hg38 cell type Lung Biosample type Tissue Biosamples term id UBERON:0002048 Tissue category Lung ENCODE Experiment id ENCSR255SQR Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 601,070 Downloaded date 06/12/2022 Release date 07/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz Processed file md5 5700b2aeb3d9b4ef0c7401d0ec097bee wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF620MAT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF620MAT/@@download/ENCFF620MAT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF620MAT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7f82c18d8e5aaff2dc293daeda0cedef Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens left lung tissue male adult (40 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 40 years;Reference=NR;External_resources=GEO:GSE175135;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-04-13,2020- system category Respiratory life stage Adult trackName ENCODE Lung (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR255SQR] [Life stage: Adult]
NGENC27T5MDOKB Download track ENCODE GM12878 (repl. 1, 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZD] [Life stage: Adult]
Show metadata Identifier NGENC27T5MDOKB Data Source ENCODE Download track Download Number of intervals 19,537 bp covered 7,021,295 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR000DZD Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody EP300 Assay TF ChIP-seq File format bed narrowPeak File size 377,827 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF242HCG.bed.gz Processed file md5 24d56219b17ceeb26dc5811393ea6977 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF242HCG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF242HCG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF242HCG/@@download/ENCFF242HCG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF242HCG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a706d6e23fa82c7d6362717d19ad7472 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002824,FactorBook:ENCSR000DZD,GEO system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 1, 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DZD] [Life stage: Adult]
NGENC27TLJKLSJ Download track ENCODE A549 (repl. 2) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR480OHP] [Life stage: Adult]
Show metadata Identifier NGENC27TLJKLSJ Data Source ENCODE Download track Download Number of intervals 82,719 bp covered 116,535,007 Output type pseudoreplicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR480OHP Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 2,342,838 Downloaded date 07/10/2025 Release date 10/01/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF291OPV.bed.gz Processed file md5 d8df5f4183030f91152e546590f905c3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF291OPV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF291OPV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF291OPV/@@download/ENCFF291OPV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF291OPV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 879b21053fd544082fcb29a1bec9ec54 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 25 minutes;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE175286;Project=GGR;Award=U01HG007900;Experiment_date_released=2017-10-19;Submitted_track_nam system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR480OHP] [Life stage: Adult]
NGENC27UFLHOSK Download track ENCODE CD4+ alpha-beta effector memory cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR892HPQ] [Life stage: Unknown]
Show metadata Identifier NGENC27UFLHOSK Data Source ENCODE Download track Download Number of intervals 33,662 bp covered 45,696,763 Output type pseudoreplicated peaks Genome build hg38 cell type CD4+ alpha-beta effector memory cell Biosample type Primary cell Biosamples term id CL:0000905 Tissue category Blood ENCODE Experiment id ENCSR892HPQ Biological replicate(s) 1, 2 Technical replicate 1_3, 2_2 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 929,177 Downloaded date 06/12/2022 Release date 02/04/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF129HCE.bed.gz Processed file md5 07df69aa13108a9f56967ee923bc1e81 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF129HCE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF129HCE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF129HCE/@@download/ENCFF129HCE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF129HCE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ed8b00aa3183c70a0cb1afcef5dd9d2e Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens effector memory CD4-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM997260,SCREEN-GRCh38:T_cells_effector/memory_ system category Cardiovascular life stage Unknown trackName ENCODE CD4+ alpha-beta effector memory cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR892HPQ] [Life stage: Unknown]
NGENC27UYLMISQ Download track ENCODE HEK293 (repl. 2) TF ChIP-seq HOXC10 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR294SAK] [Life stage: Embryonic]
Show metadata Identifier NGENC27UYLMISQ Data Source ENCODE Download track Download Number of intervals 575 bp covered 263,055 Output type IDR thresholded peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR294SAK Biological replicate(s) 2 Technical replicate 2_1 Antibody HOXC10 Assay TF ChIP-seq File format bed narrowPeak File size 11,568 Downloaded date 07/10/2025 Release date 12/21/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF119BPR.bed.gz Processed file md5 f800e228bb82addc4e87c1ed2ae9f1bd wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF119BPR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF119BPR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF119BPR/@@download/ENCFF119BPR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF119BPR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d747bdf866ee6c0dfb240778494b82a7 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXC10;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE230973;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-0 system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 2) TF ChIP-seq HOXC10 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR294SAK] [Life stage: Embryonic]
NGENC27W4ESLFS Download track ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K4me2-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR766NHB] [Life stage: Adult]
Show metadata Identifier NGENC27W4ESLFS Data Source ENCODE Download track Download Number of intervals 77,480 bp covered 108,137,725 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR766NHB Biological replicate(s) 2, 3 Technical replicate 2_1, 3_1 Antibody H3K4me2 Assay Histone ChIP-seq File format bed narrowPeak File size 2,281,517 Downloaded date 07/10/2025 Release date 11/12/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF350NVQ.bed.gz Processed file md5 b084576c46d8fc059f14a8e9bb4cb051 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF350NVQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF350NVQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF350NVQ/@@download/ENCFF350NVQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF350NVQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f9df913c5a5b28d492f8db561788f554 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91331;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=r system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K4me2-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR766NHB] [Life stage: Adult]
NGENC27XDYSHSY Download track ENCODE A549 (repl. 1) TF ChIP-seq JUNB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR656VWZ] [Life stage: Adult]
Show metadata Identifier NGENC27XDYSHSY Data Source ENCODE Download track Download Number of intervals 23,329 bp covered 11,059,456 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR656VWZ Biological replicate(s) 1 Technical replicate 1_1 Antibody JUNB Assay TF ChIP-seq File format bed narrowPeak File size 394,450 Downloaded date 07/10/2025 Release date 01/02/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF376VRO.bed.gz Processed file md5 1c8f6c2277fb18de3e2e0f765007cfb7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF376VRO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF376VRO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF376VRO/@@download/ENCFF376VRO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF376VRO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2bb807da1aeeaa32027a804b629b96a4 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92818;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12 system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1) TF ChIP-seq JUNB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR656VWZ] [Life stage: Adult]
NGENC27XGHX2CK Download track ENCODE HepG2 (repl. 1) eCLIP DHX30 peaks (narrowPeak) [Experiment: ENCSR565DGW] [Life stage: Child]
Show metadata Identifier NGENC27XGHX2CK Data Source ENCODE Download track Download Number of intervals 5,875 bp covered 308,183 Output type peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR565DGW Biological replicate(s) 1 Technical replicate 1_1 Antibody DHX30 Assay eCLIP File format bed narrowPeak File size 108,420 Downloaded date 06/04/2018 Release date 12/03/2016 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF523LNK.bed.gz Processed file md5 0d0fcd46e2a466a503aff625117382c0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF523LNK.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF523LNK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF523LNK/@@download/ENCFF523LNK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF523LNK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2c4d0c7992b14a8dd560da94c6418233 Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE91877,RBPImage:DHX30;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-08-19;Submitted_track_name=654_01.bas system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1) eCLIP DHX30 peaks (narrowPeak) [Experiment: ENCSR565DGW] [Life stage: Child]
NGENC27ZVYZU6L Download track ENCODE Fibroblast (repl. 1, 2) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ARO] [Life stage: Adult, Child]
Show metadata Identifier NGENC27ZVYZU6L Data Source ENCODE Download track Download Number of intervals 12,594 bp covered 7,325,685 Output type IDR thresholded peaks Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Lung ENCODE Experiment id ENCSR000ARO Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody EZH2 Assay TF ChIP-seq File format bed narrowPeak File size 238,860 Downloaded date 06/12/2022 Release date 08/13/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz Processed file md5 9b69942f444d42a01b295f213948fe0d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF479BAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF479BAW/@@download/ENCFF479BAW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF479BAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 671f0ca1064979147803e80e3e26a44c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources system category Respiratory life stage Adult, Child trackName ENCODE Fibroblast (repl. 1, 2) TF ChIP-seq EZH2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ARO] [Life stage: Adult, Child]
NGENC2A23RKOJ6 Download track ENCODE K562 (repl. 1) TF ChIP-seq MCM5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR079WHK] [Life stage: Adult]
Show metadata Identifier NGENC2A23RKOJ6 Data Source ENCODE Download track Download Number of intervals 21 bp covered 6,930 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR079WHK Biological replicate(s) 1 Technical replicate 1_1 Antibody MCM5 Assay TF ChIP-seq File format bed narrowPeak File size 589 Downloaded date 06/12/2022 Release date 11/29/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331IMJ.bed.gz Processed file md5 19ef0f1746f79ef9bf68b8ff3139e2af wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331IMJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF331IMJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF331IMJ/@@download/ENCFF331IMJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF331IMJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d56990a6871f05743e66144e4796d4a0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91454;Project=ENCODE;Award=U54HG006996;Exper system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq MCM5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR079WHK] [Life stage: Adult]
NGENC2A2S3RMD6 Download track ENCODE Lower motor neurons (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR312HLG] [Life stage: Child]
Show metadata Identifier NGENC2A2S3RMD6 Data Source ENCODE Download track Download Number of intervals 49,321 bp covered 41,458,238 Output type replicated peaks Genome build hg38 cell type Lower motor neurons Biosample type In vitro differentiated cells Biosamples term id CL:0000100 Tissue category Blood ENCODE Experiment id ENCSR312HLG Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,412,311 Downloaded date 06/12/2022 Release date 08/18/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF281UIJ.bed.gz Processed file md5 4b92da6f07c7b96085c24a47b97bc71c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF281UIJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF281UIJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF281UIJ/@@download/ENCFF281UIJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF281UIJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5ac83b5ed4d3beb71ce316b727e45b4f Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 6 years;Reference=PMID:35045337;External_resources=GEO:GSE187463;Project=ENCODE;Award=UM1HG009442;Experiment_date_release system category Cardiovascular life stage Child trackName ENCODE Lower motor neurons (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR312HLG] [Life stage: Child]
NGENC2A3E25THZ Download track ENCODE Right ventricle (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR356RNZ] [Life stage: Adult]
Show metadata Identifier NGENC2A3E25THZ Data Source ENCODE Download track Download Number of intervals 276,161 bp covered 3,317,668 Output type footprints Genome build hg38 cell type Right ventricle Biosample type Tissue Biosamples term id UBERON:0002080 Tissue category Heart ENCODE Experiment id ENCSR356RNZ Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,879,190 Downloaded date 06/12/2022 Release date 09/27/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF472FAS.bed.gz Processed file md5 42ca7f72ae377836fb0a0bc59aa96ea6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF472FAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF472FAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF472FAS/@@download/ENCFF472FAS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF472FAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 18b06f588107fdf7de4f2c8b996a3258 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens heart right ventricle tissue female adult (46 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 46 years;Reference=NR;External_resources=GEO:GSE170562;Project=ENCODE;Award=UM1HG009444;Experiment_date_released system category Cardiovascular life stage Adult trackName ENCODE Right ventricle (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR356RNZ] [Life stage: Adult]
NGENC2A45R2Z7P Download track ENCODE K562 (repl. 1) TF ChIP-seq POLR2B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR325RLL] [Life stage: Adult]
Show metadata Identifier NGENC2A45R2Z7P Data Source ENCODE Download track Download Number of intervals 16,802 bp covered 6,359,971 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR325RLL Biological replicate(s) 1 Technical replicate 1_1 Antibody POLR2B Assay TF ChIP-seq File format bed narrowPeak File size 327,123 Downloaded date 06/12/2022 Release date 12/30/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568KTJ.bed.gz Processed file md5 98aa2ac2e064fc3fbe793238cb9af94b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568KTJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568KTJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF568KTJ/@@download/ENCFF568KTJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF568KTJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 41d889ea342d4b82415dd176fc227206 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127587;Project=ENCODE;Award=U54HG006996;Experiment_date_ system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq POLR2B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR325RLL] [Life stage: Adult]
NGENC2A4AW7N7B Download track ENCODE A549 (repl. 1, 2) TF ChIP-seq ATF3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BPS] [Life stage: Adult]
Show metadata Identifier NGENC2A4AW7N7B Data Source ENCODE Download track Download Number of intervals 9,853 bp covered 4,602,945 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR000BPS Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ATF3 Assay TF ChIP-seq File format bed narrowPeak File size 184,227 Downloaded date 07/10/2025 Release date 01/02/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF434HZA.bed.gz Processed file md5 82bf52411a4f61b2cd5913cc85779237 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF434HZA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF434HZA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF434HZA/@@download/ENCFF434HZA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF434HZA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1d583b9b8d3563ed9045a5288481cc14 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR00 system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) TF ChIP-seq ATF3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BPS] [Life stage: Adult]
NGENC2A5LA3NU4 Download track ENCODE GM23338 (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult]
Show metadata Identifier NGENC2A5LA3NU4 Data Source ENCODE Download track Download Number of intervals 91,860 bp covered 54,429,280 Output type replicated peaks Genome build hg38 cell type GM23338 Biosample type Cell line Biosamples term id EFO:0007950 Tissue category iPSC ENCODE Experiment id ENCSR695NNR Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody H3K27me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 2,609,124 Downloaded date 05/15/2024 Release date 09/15/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz Processed file md5 74e4647e641e26e02e9524c474c1f428 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF157LBR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF157LBR/@@download/ENCFF157LBR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF157LBR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8a555b7e195af60fbc0035fb6f980c19 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 replicated peaks Track Description Biosample_summary=Homo sapiens GM23338;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE257811;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-18,2020-07-06;Submitted_track_name=rep1_vs_rep2.overlap.bfilt.narr system category Stem Cell life stage Adult trackName ENCODE GM23338 (repl. 1, 2) Mint-ChIP-seq H3K27me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR695NNR] [Life stage: Adult]
NGENC2A7S36JFU Download track ENCODE Skin (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR128RMY] [Life stage: Adult]
Show metadata Identifier NGENC2A7S36JFU Data Source ENCODE Download track Download Number of intervals 49,213,993 bp covered 49,213,993 Output type methylation state at CpG Genome build hg38 cell type Skin Biosample type Tissue Biosamples term id UBERON:0002097 Tissue category Skin ENCODE Experiment id ENCSR128RMY Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 664,947,893 Downloaded date 06/12/2022 Release date 03/01/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF553TBM.bed.gz Processed file md5 6ea0b15df69cdd683601a8d400b97a2d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF553TBM.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF553TBM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF553TBM/@@download/ENCFF553TBM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF553TBM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 645155afbbb7d662ad6b93c901474b98 Data Category Methylation Genomic feature type WGB-Seq methylation state at CpG Track Description Biosample_summary=Homo sapiens lower leg skin tissue male adult (37 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv2;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE127285;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-01-22;Submitted_trac system category Integumentary life stage Adult trackName ENCODE Skin (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR128RMY] [Life stage: Adult]
NGENC2A7W2ECF7 Download track ENCODE HG02973 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR038WVV] [Life stage: Adult]
Show metadata Identifier NGENC2A7W2ECF7 Data Source ENCODE Download track Download Number of intervals 91,825 bp covered 77,202,402 Output type IDR thresholded peaks Genome build hg38 cell type HG02973 Biosample type Cell line Biosamples term id EFO:0010858 Tissue category Blood ENCODE Experiment id ENCSR038WVV Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,067,988 Downloaded date 06/12/2022 Release date 01/26/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF557SWI.bed.gz Processed file md5 699cd893435c6ebb1df78cec9ddaf517 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF557SWI.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF557SWI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF557SWI/@@download/ENCFF557SWI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF557SWI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ca735e813fdcd362b33c8b08fbfb4584 Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HG02973;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172634;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.nar system category Cardiovascular life stage Adult trackName ENCODE HG02973 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR038WVV] [Life stage: Adult]
NGENC2AA44EGU3 Download track ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq RAD21 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTU] [Life stage: Adult]
Show metadata Identifier NGENC2AA44EGU3 Data Source ENCODE Download track Download Number of intervals 45,502 bp covered 8,829,967 Output type IDR thresholded peaks Genome build hg38 cell type Ishikawa Biosample type Cell line Biosamples term id EFO:0005718 Tissue category Female Reproductive ENCODE Experiment id ENCSR000BTU Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody RAD21 Assay TF ChIP-seq File format bed narrowPeak File size 800,406 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570JVV.bed.gz Processed file md5 72416a16fc5bd046c3a7767a02b27d4c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570JVV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570JVV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF570JVV/@@download/ENCFF570JVV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF570JVV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 85d0ca046a6b435ba197bf9418826321 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens Ishikawa;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM1010801,UCSC-ENCODE-hg19:wgEncodeEH003263;Project=ENCODE;Award=U54HG004576; system category Reproductive life stage Adult trackName ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq RAD21 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTU] [Life stage: Adult]
NGENC2ABMU2ZYP Download track ENCODE CD8+ alpha-beta memory T cell (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR160VHJ] [Life stage: Adult]
Show metadata Identifier NGENC2ABMU2ZYP Data Source ENCODE Download track Download Number of intervals 61,750 bp covered 13,117,919 Output type peaks pValue=0.05 Genome build hg38 cell type CD8+ alpha-beta memory T cell Biosample type Primary cell Biosamples term id CL:0000907 Tissue category Blood ENCODE Experiment id ENCSR160VHJ Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 710,565 Downloaded date 06/12/2022 Release date 09/01/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF585AIC.bed.gz Processed file md5 89897faa6e6180aefa23feac5d26a79f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF585AIC.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF585AIC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF585AIC/@@download/ENCFF585AIC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF585AIC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ed3cb956bd4da5ff8a6c7f94fb5dd890 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (36 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSE187138;Project=ENCODE;Award=UM1HG009444;Experime system category Cardiovascular life stage Adult trackName ENCODE CD8+ alpha-beta memory T cell (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR160VHJ] [Life stage: Adult]
NGENC2ADGCTKRY Download track ENCODE HepG2 (repl. 2) TF ChIP-seq ADNP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR981BHT] [Life stage: Child]
Show metadata Identifier NGENC2ADGCTKRY Data Source ENCODE Download track Download Number of intervals 3,576 bp covered 1,198,346 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR981BHT Biological replicate(s) 2 Technical replicate 2_1 Antibody ADNP Assay TF ChIP-seq File format bed narrowPeak File size 69,756 Downloaded date 06/12/2022 Release date 07/01/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF576EPM.bed.gz Processed file md5 dc637bf17050c3e58ab48cde551d47c2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF576EPM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF576EPM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF576EPM/@@download/ENCFF576EPM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF576EPM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 59f6e56e50de5bfff91778bb655b236f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ADNP;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170838;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq ADNP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR981BHT] [Life stage: Child]
NGENC2ADTOA4B5 Download track ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR529YKU] [Life stage: Adult]
Show metadata Identifier NGENC2ADTOA4B5 Data Source ENCODE Download track Download Number of intervals 51,234 bp covered 80,453,818 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR529YKU Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody H3K4me1 Assay Histone ChIP-seq File format bed narrowPeak File size 1,427,410 Downloaded date 07/10/2025 Release date 11/13/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF154DRS.bed.gz Processed file md5 5b1c6abee63e44896fe3cb65768454b1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF154DRS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF154DRS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF154DRS/@@download/ENCFF154DRS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF154DRS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d74cfed8ae4651415f475014e0e91141 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91278;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=r system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR529YKU] [Life stage: Adult]
NGENC2AF7K3SDX Download track ENCODE OCI-LY3 (repl. 2) TF ChIP-seq EZH2phosphoT487 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR584ATA] [Life stage: Adult]
Show metadata Identifier NGENC2AF7K3SDX Data Source ENCODE Download track Download Number of intervals 1,114 bp covered 500,255 Output type IDR thresholded peaks Genome build hg38 cell type OCI-LY3 Biosample type Cell line Biosamples term id EFO:0006710 Tissue category Blood ENCODE Experiment id ENCSR584ATA Biological replicate(s) 2 Technical replicate 2_1 Antibody EZH2phosphoT487 Assay TF ChIP-seq File format bed narrowPeak File size 19,862 Downloaded date 06/12/2022 Release date 02/04/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF097AIL.bed.gz Processed file md5 2c8b909ede12c943f2e2bba4faceacd5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF097AIL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF097AIL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF097AIL/@@download/ENCFF097AIL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF097AIL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 33afc4c8bd43c7a09ffe497477925507 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens OCI-LY3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 52 years;Reference=NR;External_resources=GEO:GSE123220;Project=ENCODE;Award=U54HG006991;Experiment_date_released=20 system category Cardiovascular life stage Adult trackName ENCODE OCI-LY3 (repl. 2) TF ChIP-seq EZH2phosphoT487 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR584ATA] [Life stage: Adult]
NGENC2AG5BPU5Z Download track ENCODE Small intestine (repl. 1) WGB-Seq methylation state at CHG (bed9+5 WGBS) [Experiment: ENCSR522UKJ] [Life stage: Embryonic]
Show metadata Identifier NGENC2AG5BPU5Z Data Source ENCODE Download track Download Number of intervals 2,910,746 bp covered 2,910,746 Output type methylation state at CHG Genome build hg38 cell type Small intestine Biosample type Tissue Biosamples term id UBERON:0002108 Tissue category Digestive ENCODE Experiment id ENCSR522UKJ Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 36,905,356 Downloaded date 06/12/2022 Release date 03/09/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF629CHP.bed.gz Processed file md5 c56a27ebde641e47f4d8a6ab65f8bcaa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF629CHP.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF629CHP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF629CHP/@@download/ENCFF629CHP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF629CHP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 29dc643c9ac296515d1fee60d092bc5c Data Category Methylation Genomic feature type WGB-Seq methylation state at CHG Track Description Biosample_summary=Homo sapiens small intestine tissue male embryo (108 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=embryonic 108 days;Reference=NR;External_resources=GEO:GSM1097764;Project=Roadmap;Award=U01ES017156;Experiment_date_released=2013-07-31;Subm system category Digestive life stage Embryonic trackName ENCODE Small intestine (repl. 1) WGB-Seq methylation state at CHG (bed9+5 WGBS) [Experiment: ENCSR522UKJ] [Life stage: Embryonic]
NGENC2AGAYWBVR Download track ENCODE Endothelial cell (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000ENZ] [Life stage: Newborn]
Show metadata Identifier NGENC2AGAYWBVR Data Source ENCODE Download track Download Number of intervals 98,845 bp covered 18,584,342 Output type peaks pValue=0.001 Genome build hg38 cell type Endothelial cell Biosample type Primary cell Biosamples term id CL:0000115 Tissue category Blood Vessel ENCODE Experiment id ENCSR000ENZ Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,120,328 Downloaded date 06/12/2022 Release date 02/08/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF484ZKJ.bed.gz Processed file md5 4ee24d249a64a16bdebf68fbac3ed43c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF484ZKJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF484ZKJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF484ZKJ/@@download/ENCFF484ZKJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF484ZKJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c74af37e5e225ea80de0a3b47d0da08c Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens dermis blood vessel endothelial cell male newborn;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=UCSC-ENCODE-hg19: system category Cardiovascular life stage Newborn trackName ENCODE Endothelial cell (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000ENZ] [Life stage: Newborn]
NGENC2AI5TCMZE Download track ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult]
Show metadata Identifier NGENC2AI5TCMZE Data Source ENCODE Download track Download Number of intervals 237,760 bp covered 213,779,177 Output type replicated peaks Genome build hg38 cell type Mucosa Biosample type Tissue Biosamples term id UBERON:0000344 Tissue category Digestive ENCODE Experiment id ENCSR970UNF Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1, 2_2 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 6,490,828 Downloaded date 06/12/2022 Release date 03/16/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF065DHJ.bed.gz Processed file md5 596f921dbab7259224923cd73b76a64b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF065DHJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF065DHJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF065DHJ/@@download/ENCFF065DHJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF065DHJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e3655544eb938ee3c538de86e58e301b Data Category Accessible chromatin Genomic feature type ATAC-seq replicated peaks Track Description Biosample_summary=Homo sapiens colonic mucosa tissue female adult (41 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE170821;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-20;Submitted_tra system category Digestive life stage Adult trackName ENCODE Mucosa (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR970UNF] [Life stage: Adult]