NGENC25KC3UEQU Download track ENCODE B cell (repl. 1, 2) TF ChIP-seq EZH2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AUZ] [Life stage: Adult]
Show metadata Identifier NGENC25KC3UEQU Data Source ENCODE Download track Download Number of intervals 1,637 bp covered 693,722 Output type conservative IDR thresholded peaks Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id ENCSR000AUZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody EZH2 Assay TF ChIP-seq File format bed narrowPeak File size 31,677 Downloaded date 06/12/2022 Release date 01/05/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz Processed file md5 17d346c18a7eebe657115f329f37dcfa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF952UJB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF952UJB/@@download/ENCFF952UJB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF952UJB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 061db04922a449dea18516c34a2a6556 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens B cell female adult (27 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 27 years;Reference=NR;External_resources=GEO:GSM1003470,UCSC-ENCODE-hg19:wgEn system category Lymphatic life stage Adult trackName ENCODE B cell (repl. 1, 2) TF ChIP-seq EZH2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AUZ] [Life stage: Adult]
NGENC25KNK3BOI Download track ENCODE HepG2 (repl. 2) TF ChIP-seq MIXL1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR966PJY] [Life stage: Child]
Show metadata Identifier NGENC25KNK3BOI Data Source ENCODE Download track Download Number of intervals 17,281 bp covered 6,297,695 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR966PJY Biological replicate(s) 2 Technical replicate 2_1 Antibody MIXL1 Assay TF ChIP-seq File format bed narrowPeak File size 292,241 Downloaded date 06/12/2022 Release date 12/02/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF364DBS.bed.gz Processed file md5 a893c163150faf87542276aa42a43ea7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF364DBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF364DBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF364DBS/@@download/ENCFF364DBS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF364DBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 4539187c969dc01ce5ab8b8a1fe5f2ad Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIXL1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;E system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq MIXL1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR966PJY] [Life stage: Child]
NGENC25LDIFQSK Download track ENCODE HeLa-S3 (repl. 1) TF ChIP-seq RFX5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ECX] [Life stage: Adult]
Show metadata Identifier NGENC25LDIFQSK Data Source ENCODE Download track Download Number of intervals 22,289 bp covered 7,243,021 Output type IDR thresholded peaks Genome build hg38 cell type HeLa-S3 Biosample type Cell line Biosamples term id EFO:0002791 Tissue category Female Reproductive ENCODE Experiment id ENCSR000ECX Biological replicate(s) 1 Technical replicate 1_1 Antibody RFX5 Assay TF ChIP-seq File format bed narrowPeak File size 432,891 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BSD.bed.gz Processed file md5 96f603bf4a9fe16614a1f916edb5eeb3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BSD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF816BSD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF816BSD/@@download/ENCFF816BSD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF816BSD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e2aff2e8831063952b55439316227994 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HeLa-S3;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001818,GEO:GSM935560, system category Reproductive life stage Adult trackName ENCODE HeLa-S3 (repl. 1) TF ChIP-seq RFX5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ECX] [Life stage: Adult]
NGENC25LXM2MNW Download track ENCODE Kidney (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR331CRR] [Life stage: Adult]
Show metadata Identifier NGENC25LXM2MNW Data Source ENCODE Download track Download Number of intervals 74,313 bp covered 62,141,724 Output type pseudoreplicated peaks Genome build hg38 cell type Kidney Biosample type Tissue Biosamples term id UBERON:0002113 Tissue category Kidney ENCODE Experiment id ENCSR331CRR Biological replicate(s) 1 Technical replicate 1_4 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,660,420 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz Processed file md5 8669b98147f211830ba5074bfe15502c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF294RUK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF294RUK/@@download/ENCFF294RUK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF294RUK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bd4b19c2df95c8c1c1fa9231a131c82c Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens kidney tissue male adult (50 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=GEO:GSM773000;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07 system category Renal life stage Adult trackName ENCODE Kidney (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR331CRR] [Life stage: Adult]
NGENC25N37PVQN Download track ENCODE Kidney (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR120LVW] [Life stage: Embryonic]
Show metadata Identifier NGENC25N37PVQN Data Source ENCODE Download track Download Number of intervals 176,335 bp covered 2,086,382 Output type footprints Genome build hg38 cell type Kidney Biosample type Tissue Biosamples term id UBERON:0002113 Tissue category Kidney ENCODE Experiment id ENCSR120LVW Biological replicate(s) 1 Technical replicate 1_2 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,215,584 Downloaded date 06/12/2022 Release date 11/11/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF897HBF.bed.gz Processed file md5 f7a3cf3ad75f734dc42b3ee257ed8a91 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF897HBF.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF897HBF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF897HBF/@@download/ENCFF897HBF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF897HBF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b7cf87f5b63d68bd0ee0166ae7f95656 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens left kidney tissue female embryo (98 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 98 days;Reference=PMID:32728217; system category Renal life stage Embryonic trackName ENCODE Kidney (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR120LVW] [Life stage: Embryonic]
NGENC25OE57DCI Download track ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR391SNO] [Life stage: Adult]
Show metadata Identifier NGENC25OE57DCI Data Source ENCODE Download track Download Number of intervals 62,551 bp covered 66,719,075 Output type pseudoreplicated peaks Genome build hg38 cell type Middle frontal area BA46 Biosample type Tissue Biosamples term id UBERON:0006483 Tissue category Brain ENCODE Experiment id ENCSR391SNO Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,238,258 Downloaded date 06/12/2022 Release date 04/10/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz Processed file md5 d5dc4174390d1f7d87e44948c34cabf9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF146SGG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF146SGG/@@download/ENCFF146SGG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF146SGG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f514f1232f5703062b737912ea022dd3 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens dorsolateral prefrontal cortex tissue male adult (87 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 87 years;Reference=NR;External_resources=GEO:GSE175222;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=202 system category Nervous life stage Adult trackName ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR391SNO] [Life stage: Adult]
NGENC25OIWQTZ3 Download track ENCODE HepG2 (repl. 1) TF ChIP-seq ZIK1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR862VDD] [Life stage: Child]
Show metadata Identifier NGENC25OIWQTZ3 Data Source ENCODE Download track Download Number of intervals 3,579 bp covered 1,675,376 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR862VDD Biological replicate(s) 1 Technical replicate 1_1 Antibody ZIK1 Assay TF ChIP-seq File format bed narrowPeak File size 64,617 Downloaded date 06/12/2022 Release date 06/29/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793ERJ.bed.gz Processed file md5 ee1b4bcff945655ba2ae38fb9f1ff5d1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793ERJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF793ERJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF793ERJ/@@download/ENCFF793ERJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF793ERJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 89db5defa211b5b3813f0b3d759fc9f6 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZIK1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170349;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1) TF ChIP-seq ZIK1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR862VDD] [Life stage: Child]
NGENC25OPTPNJ2 Download track ENCODE K562 (repl. 2) TF ChIP-seq POLR2A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR388QZF] [Life stage: Adult]
Show metadata Identifier NGENC25OPTPNJ2 Data Source ENCODE Download track Download Number of intervals 34,607 bp covered 32,840,740 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR388QZF Biological replicate(s) 2 Technical replicate 2_1 Antibody POLR2A Assay TF ChIP-seq File format bed narrowPeak File size 586,872 Downloaded date 06/12/2022 Release date 11/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF438VCR.bed.gz Processed file md5 c43f8212a8315db82582d88a350ee9ce wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF438VCR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF438VCR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF438VCR/@@download/ENCFF438VCR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF438VCR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 aefd41bb11246d7b89c0c6a277cd9c3b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91721;Project=ENCODE;Award=U54HG006996;Exper system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq POLR2A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR388QZF] [Life stage: Adult]
NGENC25Q3GS5WA Download track ENCODE Epithelial cell (repl. 1, 3) Histone ChIP-seq H4K20me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AMM] [Life stage: Adult]
Show metadata Identifier NGENC25Q3GS5WA Data Source ENCODE Download track Download Number of intervals 8,277 bp covered 3,251,606 Output type pseudoreplicated peaks Genome build hg38 cell type Epithelial cell Biosample type Primary cell Biosamples term id CL:0000066 Tissue category Breast ENCODE Experiment id ENCSR000AMM Biological replicate(s) 1, 3 Technical replicate 1_1, 3_1 Antibody H4K20me1 Assay Histone ChIP-seq File format bed narrowPeak File size 180,084 Downloaded date 06/12/2022 Release date 11/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862WCF.bed.gz Processed file md5 6443c0c500d37123428c1e3086a4a9c7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862WCF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF862WCF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF862WCF/@@download/ENCFF862WCF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF862WCF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ccbe3b058721018e0b7ded5f7dad64de Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H4K20me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens mammary epithelial cell female adult (50 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 50 years;Reference=PMID:32728046;External_resources=GEO:GSM733647,UCSC-ENCODE-hg19:wgEncodeEH000092;Project=ENCODE;Award system category Reproductive life stage Adult trackName ENCODE Epithelial cell (repl. 1, 3) Histone ChIP-seq H4K20me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AMM] [Life stage: Adult]
NGENC25RYBJWDN Download track ENCODE RWPE2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR080SNF] [Life stage: Unknown]
Show metadata Identifier NGENC25RYBJWDN Data Source ENCODE Download track Download Number of intervals 158,889 bp covered 134,464,121 Output type conservative IDR thresholded peaks Genome build hg38 cell type RWPE2 Biosample type Cell line Biosamples term id EFO:0007610 Tissue category Male Reproductive ENCODE Experiment id ENCSR080SNF Biological replicate(s) 1, 2, 3 Technical replicate 1_1, 2_1, 3_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 3,610,539 Downloaded date 06/12/2022 Release date 02/25/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF485JAI.bed.gz Processed file md5 9f3208aec19cb5f4ed7fb71e54dc7d6c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF485JAI.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF485JAI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF485JAI/@@download/ENCFF485JAI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF485JAI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5e64eb871a97525ef42348d350a11fee Data Category Accessible chromatin Genomic feature type ATAC-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens RWPE2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172699;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-04-06;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb;ENC system category Reproductive life stage Unknown trackName ENCODE RWPE2 (repl. 1, 2, 3) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR080SNF] [Life stage: Unknown]
NGENC25SDJJYTO Download track ENCODE HepG2 (repl. 2) TF ChIP-seq POGK IDR thresholded peaks (narrowPeak) [Experiment: ENCSR747MFU] [Life stage: Child]
Show metadata Identifier NGENC25SDJJYTO Data Source ENCODE Download track Download Number of intervals 15,010 bp covered 8,414,319 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR747MFU Biological replicate(s) 2 Technical replicate 2_1 Antibody POGK Assay TF ChIP-seq File format bed narrowPeak File size 288,247 Downloaded date 05/15/2024 Release date 07/23/2022 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF161LVO.bed.gz Processed file md5 da958fba95ffdd26c5cfe36a325e05d4 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF161LVO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF161LVO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF161LVO/@@download/ENCFF161LVO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF161LVO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 236641615dcec045bbe9b1f091f5ba35 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGK;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE230919;Project=ENCODE;Award=UM1HG009411;Experim system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq POGK IDR thresholded peaks (narrowPeak) [Experiment: ENCSR747MFU] [Life stage: Child]
NGENC25TF4NGQE Download track ENCODE Nephron (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR783VHL] [Life stage: Embryonic]
Show metadata Identifier NGENC25TF4NGQE Data Source ENCODE Download track Download Number of intervals 105,221 bp covered 70,837,866 Output type pseudoreplicated peaks Genome build hg38 cell type Nephron Biosample type Organoid Biosamples term id UBERON:0001285 Tissue category Kidney ENCODE Experiment id ENCSR783VHL Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 2,938,248 Downloaded date 06/12/2022 Release date 05/06/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF570LAQ.bed.gz Processed file md5 53b547e39b87d823b840196d4cc3894c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF570LAQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF570LAQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF570LAQ/@@download/ENCFF570LAQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF570LAQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0e015ebf85d8ec8f35bee86432478eed Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens nephron organoid, 35 days post differentiation;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177707;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-07-30,2020-07-06;Submitted_t system category Renal life stage Embryonic trackName ENCODE Nephron (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR783VHL] [Life stage: Embryonic]
NGENC25TIVSFHV Download track ENCODE HepG2 (repl. 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATD] [Life stage: Child]
Show metadata Identifier NGENC25TIVSFHV Data Source ENCODE Download track Download Number of intervals 132,591 bp covered 87,727,980 Output type pseudoreplicated peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR000ATD Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 2,629,178 Downloaded date 06/12/2022 Release date 10/30/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297YYQ.bed.gz Processed file md5 d02ff209445a97e28ca372a03ae15890 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297YYQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF297YYQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF297YYQ/@@download/ENCFF297YYQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF297YYQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e43d85f53ce8ecabb9ebec871a9ed977 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003087,GEO:GSM1003519;Project=ENCODE;Award=U54HG004570;Experiment_date_released=201 system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ATD] [Life stage: Child]
NGENC25TXH64PE Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNZ] [Life stage: Adult]
Show metadata Identifier NGENC25TXH64PE Data Source ENCODE Download track Download Number of intervals 16,925 bp covered 4,148,899 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000DNZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ATF1 Assay TF ChIP-seq File format bed narrowPeak File size 314,953 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF980NSF.bed.gz Processed file md5 eb939cdd922a0f542eeaa75a5255c75b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF980NSF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF980NSF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF980NSF/@@download/ENCFF980NSF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF980NSF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 3f1567a67324fed52bffd0618c198eac Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002865,FactorBook:ENCSR000DNZ,G system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNZ] [Life stage: Adult]
NGENC25VJPDZMN Download track ENCODE T-cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR032MEH] [Life stage: Adult]
Show metadata Identifier NGENC25VJPDZMN Data Source ENCODE Download track Download Number of intervals 47,985 bp covered 23,126,690 Output type pseudoreplicated peaks Genome build hg38 cell type T-cell Biosample type Primary cell Biosamples term id CL:0000084 Tissue category Immune ENCODE Experiment id ENCSR032MEH Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,161,080 Downloaded date 06/12/2022 Release date 08/31/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF113DJW.bed.gz Processed file md5 864929ad1fb5da6d4c31694dbec2285a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF113DJW.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF113DJW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF113DJW/@@download/ENCFF113DJW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF113DJW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 962628a15b66a7ef4db2949ff85cbfa8 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens T-cell male adult (43 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 43 years;Reference=NR;External_resources=GEO:GSE215517;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-06-08;Submitted_track_name=rep1-pr1_ system category Lymphatic life stage Adult trackName ENCODE T-cell (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR032MEH] [Life stage: Adult]
NGENC25WGNKJCM Download track ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult]
Show metadata Identifier NGENC25WGNKJCM Data Source ENCODE Download track Download Number of intervals 62,499 bp covered 10,806,128 Output type IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR000DMV Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 1,071,157 Downloaded date 06/12/2022 Release date 09/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz Processed file md5 fdada0038b72d8bc3a448ce8797618a6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF414SZG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF414SZG/@@download/ENCFF414SZG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF414SZG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c0d12f1872e0f377dd19cb97b6c4fbe0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DMV,UCSC-ENCODE-hg19:wgEncodeEH0005 system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult]
NGENC25WMFEMJY Download track ENCODE Adipocyte (repl. 1) Histone ChIP-seq H3K9ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR162VXO] [Life stage: Adult]
Show metadata Identifier NGENC25WMFEMJY Data Source ENCODE Download track Download Number of intervals 77,248 bp covered 79,182,684 Output type pseudoreplicated peaks Genome build hg38 cell type Adipocyte Biosample type In vitro differentiated cells Biosamples term id CL:0000136 Tissue category Adipose ENCODE Experiment id ENCSR162VXO Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K9ac Assay Histone ChIP-seq File format bed narrowPeak File size 2,114,105 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF579IFQ.bed.gz Processed file md5 145c5bfaf294a30b26c8bdf781b74a36 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF579IFQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF579IFQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF579IFQ/@@download/ENCFF579IFQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF579IFQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 62e24b8970c8d8cac84cc71abb1b1eda Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens adipocyte originated from mesenchymal stem cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772741,GEO:GSM772812;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07- system category Integumentary life stage Adult trackName ENCODE Adipocyte (repl. 1) Histone ChIP-seq H3K9ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR162VXO] [Life stage: Adult]
NGENC25WOMNYDB Download track ENCODE A549 (repl. 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR432AXE] [Life stage: Adult]
Show metadata Identifier NGENC25WOMNYDB Data Source ENCODE Download track Download Number of intervals 39,785 bp covered 14,851,704 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR432AXE Biological replicate(s) 2, 3 Technical replicate 2_1, 3_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 727,068 Downloaded date 09/10/2024 Release date 10/02/2020 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz Processed file md5 811f297545fb5764f60eaf92e9ea0f0b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF051YUQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF051YUQ/@@download/ENCFF051YUQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF051YUQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f8193dab57e030a1cc5d236412ec79dc Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92808,FactorBook:ENCSR432AXE;Project=GGR;Award=U01HG007900;Experimen system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR432AXE] [Life stage: Adult]
NGENC25WWKE5FE Download track ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR752UOD] [Life stage: Adult]
Show metadata Identifier NGENC25WWKE5FE Data Source ENCODE Download track Download Number of intervals 46,801 bp covered 75,342,291 Output type replicated peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR752UOD Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,376,880 Downloaded date 06/12/2022 Release date 10/20/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF385RAW.bed.gz Processed file md5 e66a33c0097d1bf2a7e597c5e09f6e75 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF385RAW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF385RAW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF385RAW/@@download/ENCFF385RAW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF385RAW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e09f53da9fcdd8859ae9f9ada8063dbc Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32737473;External_resources=GEO:GSE96352,SCREEN-GRCh38:MCF-7;Project=ENCODE;Award=U54HG006991;Exp system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR752UOD] [Life stage: Adult]
NGENC25WZSFUGW Download track ENCODE MCF-7 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult]
Show metadata Identifier NGENC25WZSFUGW Data Source ENCODE Download track Download Number of intervals 54,648 bp covered 9,051,221 Output type IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR000DMV Biological replicate(s) 2 Technical replicate 2_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 894,321 Downloaded date 06/12/2022 Release date 09/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz Processed file md5 f971bbb6c9b645cf50f1fc389bd62ac3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF480FEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF480FEZ/@@download/ENCFF480FEZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF480FEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 354919335381769ce72e18137f2db0d0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DMV,UCSC-ENCODE-hg19:wgEncodeEH0005 system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMV] [Life stage: Adult]
NGENC25XMAARUB Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq RBM22 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR848AOP] [Life stage: Adult]
Show metadata Identifier NGENC25XMAARUB Data Source ENCODE Download track Download Number of intervals 13,551 bp covered 6,843,691 Output type optimal IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR848AOP Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody RBM22 Assay TF ChIP-seq File format bed narrowPeak File size 235,707 Downloaded date 06/04/2018 Release date 01/09/2018 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420JDS.bed.gz Processed file md5 9f50c427aac1ae0ab2760ab28f0eeb8c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420JDS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF420JDS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF420JDS/@@download/ENCFF420JDS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF420JDS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6a41a04c835022e88cfcfdfe82f3d383 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq optimal IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE175256;Project=ENCODE;Award=U54HG007005;Experiment_date_r system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq RBM22 optimal IDR thresholded peaks (narrowPeak) [Experiment: ENCSR848AOP] [Life stage: Adult]
NGENC25XQ4JZGV Download track ENCODE K562 (repl. 2) TF ChIP-seq SAFB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR072VUO] [Life stage: Adult]
Show metadata Identifier NGENC25XQ4JZGV Data Source ENCODE Download track Download Number of intervals 4,745 bp covered 1,652,338 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR072VUO Biological replicate(s) 2 Technical replicate 2_1 Antibody SAFB Assay TF ChIP-seq File format bed narrowPeak File size 88,259 Downloaded date 06/12/2022 Release date 12/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302KAH.bed.gz Processed file md5 5ac5f4ffefedb97cf381dae6f381186e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302KAH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF302KAH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF302KAH/@@download/ENCFF302KAH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF302KAH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d9215cd2fd3551085f365d7136cf32fd Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE136459;Project=ENCODE;Award=U54HG007005;Experiment_date_r system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq SAFB IDR thresholded peaks (narrowPeak) [Experiment: ENCSR072VUO] [Life stage: Adult]
NGENC25YBEENRY Download track ENCODE K562 (repl. 1) GM DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR274JIR] [Life stage: Adult]
Show metadata Identifier NGENC25YBEENRY Data Source ENCODE Download track Download Number of intervals 60,763 bp covered 10,338,583 Output type peaks pValue=0.05 Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR274JIR Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay GM DNase-seq File format bed narrowPeak File size 670,694 Downloaded date 07/10/2025 Release date 02/23/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/GM_DNase-seq/narrowpeak/hg38/ENCFF097CKL.bed.gz Processed file md5 d221a55e0bfbbe3a4609250f5c55da54 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/GM_DNase-seq/narrowpeak/hg38/ENCFF097CKL.bed.gz -P GADB/Annotationtracks/ENCODE/data/GM_DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/GM_DNase-seq/narrowpeak/hg38/ENCFF097CKL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/GM_DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF097CKL/@@download/ENCFF097CKL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF097CKL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 75f97326d2f5ce855a849d9c8e4c9730 Data Category Accessible chromatin Genomic feature type GM DNase-seq peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (deletion) using TALEN;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE90319;Project=ENCODE;Award=U54HG007010;Experiment_date_released=2016-05-11;Submitted_track_name system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) GM DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR274JIR] [Life stage: Adult]
NGENC25YXRPEL3 Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq YBX1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR107RHZ] [Life stage: Adult]
Show metadata Identifier NGENC25YXRPEL3 Data Source ENCODE Download track Download Number of intervals 483 bp covered 132,083 Output type conservative IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR107RHZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody YBX1 Assay TF ChIP-seq File format bed narrowPeak File size 10,189 Downloaded date 06/12/2022 Release date 03/20/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741QAS.bed.gz Processed file md5 d47dc1ad23b93695f8461ebf3caaf889 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741QAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF741QAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF741QAS/@@download/ENCFF741QAS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF741QAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ccdbbd02b412ad49fca983c6ee93ea6a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91492,FactorBook:ENCSR107RHZ;Project=ENCODE;Award=U54HG0069 system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq YBX1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR107RHZ] [Life stage: Adult]
NGENC25YYY2KQI Download track ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR259HTB] [Life stage: Adult]
Show metadata Identifier NGENC25YYY2KQI Data Source ENCODE Download track Download Number of intervals 102,659 bp covered 37,521,608 Output type pseudoreplicated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR259HTB Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,661,065 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF668LTU.bed.gz Processed file md5 9c1b076888f062826fcf20edbb3793d9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF668LTU.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF668LTU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF668LTU/@@download/ENCFF668LTU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF668LTU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e38d1d142e3dca9df71e41cb63f4d207 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens K562 treated with 1 μM AR-42 for 24 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172551;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=pooled-p system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR259HTB] [Life stage: Adult]
NGENC26265YDGV Download track ENCODE Placenta (repl. 1) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR478UIR] [Life stage: Embryonic]
Show metadata Identifier NGENC26265YDGV Data Source ENCODE Download track Download Number of intervals 13,705 bp covered 5,582,840 Output type pseudoreplicated peaks Genome build hg38 cell type Placenta Biosample type Tissue Biosamples term id UBERON:0001987 Tissue category Placenta ENCODE Experiment id ENCSR478UIR Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 262,454 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395KIT.bed.gz Processed file md5 5f6f64b44b8d4a92ed83dfd8b0b342da wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395KIT.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF395KIT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF395KIT/@@download/ENCFF395KIT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF395KIT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 588f0257b0ff4ac1b83fb57aa72fc65e Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens placenta tissue male embryo (16 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=NR;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013-07-31;Submitted_track_name=NR system category Placental life stage Embryonic trackName ENCODE Placenta (repl. 1) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR478UIR] [Life stage: Embryonic]
NGENC262HST5RF Download track ENCODE Smooth muscle cell (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR076OHG] [Life stage: Embryonic]
Show metadata Identifier NGENC262HST5RF Data Source ENCODE Download track Download Number of intervals 48,184,441 bp covered 48,184,441 Output type methylation state at CpG Genome build hg38 cell type Smooth muscle cell Biosample type In vitro differentiated cells Biosamples term id CL:0000192 Tissue category Muscle ENCODE Experiment id ENCSR076OHG Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 633,171,681 Downloaded date 06/12/2022 Release date 07/18/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF722OMI.bed.gz Processed file md5 d9435cd6629eb5b39b8365b779f654b5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF722OMI.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF722OMI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF722OMI/@@download/ENCFF722OMI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF722OMI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b5c65735faf35ea0942b149d3992fecf Data Category Methylation Genomic feature type WGB-Seq methylation state at CpG Track Description Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Richard Myers, HAIB;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC7343189;External_resources=GEO:GSE127283;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-01-09;Subm system category Muscular life stage Embryonic trackName ENCODE Smooth muscle cell (repl. 1) WGB-Seq methylation state at CpG (bed9+5 WGBS) [Experiment: ENCSR076OHG] [Life stage: Embryonic]
NGENC2645Y6R2Z Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq RFX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR041AXL] [Life stage: Adult]
Show metadata Identifier NGENC2645Y6R2Z Data Source ENCODE Download track Download Number of intervals 17,869 bp covered 7,164,085 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR041AXL Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody RFX1 Assay TF ChIP-seq File format bed narrowPeak File size 355,737 Downloaded date 06/12/2022 Release date 11/29/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF809XVG.bed.gz Processed file md5 40d2e6ff036782d58fce9cfb65a35ef6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF809XVG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF809XVG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF809XVG/@@download/ENCFF809XVG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF809XVG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 19e68eb3a699dc9d2a84bf11f7a11dc0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91431,FactorBook:ENCSR041AXL;Project=ENCODE; system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq RFX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR041AXL] [Life stage: Adult]
NGENC265LOV63S Download track ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR291RCO] [Life stage: Adult]
Show metadata Identifier NGENC265LOV63S Data Source ENCODE Download track Download Number of intervals 1,054,446 bp covered 1,333,007,875 Output type chromatin interactions Genome build hg38 cell type CD4+ alpha-beta memory T cell Biosample type Primary cell Biosamples term id CL:0000897 Tissue category Blood ENCODE Experiment id ENCSR291RCO Biological replicate(s) 1 Technical replicate 1_1 Antibody CTCF Assay ChIA-PET File format bed bed4+19 interact File size 39,556,284 Downloaded date 09/20/2025 Release date 07/21/2021 Date added to FILER 10/30/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz Processed file md5 72db34cb7d45c0f4950df8c8434c9cbd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF116POO.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ Link out URL https://www.encodeproject.org/ Raw File URL https://www.encodeproject.org/files/ENCFF116POO/@@download/ENCFF116POO.bedpe.gz Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF116POO.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ Raw file md5 a982e07beff5ce422bea8d2fdde7d0b0 Data Category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions Track Description Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 43 years;Reference=NR;External_resourc system category Cardiovascular life stage Adult trackName ENCODE CD4+ alpha-beta memory T cell (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR291RCO] [Life stage: Adult]
NGENC266K3UTY4 Download track ENCODE WTC11 (repl. 2) TF ChIP-seq NR3C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR722OTA] [Life stage: Adult]
Show metadata Identifier NGENC266K3UTY4 Data Source ENCODE Download track Download Number of intervals 911 bp covered 491,544 Output type IDR thresholded peaks Genome build hg38 cell type WTC11 Biosample type Cell line Biosamples term id EFO:0009747 Tissue category Skin ENCODE Experiment id ENCSR722OTA Biological replicate(s) 2 Technical replicate 2_1 Antibody NR3C1 Assay TF ChIP-seq File format bed narrowPeak File size 18,855 Downloaded date 07/10/2025 Release date 12/19/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF439VDP.bed.gz Processed file md5 2de24766225484c4a955967908ca918a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF439VDP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF439VDP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF439VDP/@@download/ENCFF439VDP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF439VDP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b8b0c23c0b4f792500b6efa27fa4e0a9 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231183;Project=ENCODE;Award=UM1HG009411;Experiment_date_relea system category Integumentary life stage Adult trackName ENCODE WTC11 (repl. 2) TF ChIP-seq NR3C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR722OTA] [Life stage: Adult]
NGENC26DL56YRW Download track ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult]
Show metadata Identifier NGENC26DL56YRW Data Source ENCODE Download track Download Number of intervals 84,939 bp covered 73,174,375 Output type IDR thresholded peaks Genome build hg38 cell type Natural killer cell Biosample type Primary cell Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id ENCSR808HWS Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,901,040 Downloaded date 06/12/2022 Release date 08/31/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF293QPL.bed.gz Processed file md5 1df46dabad5a268fb4d3cffb9eed12b6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF293QPL.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF293QPL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF293QPL/@@download/ENCFF293QPL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF293QPL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 595e6bb5cc8ab4fa1d06c9800dfd3e3b Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours;Lab=Michael Snyder, Stanford;E system category Cardiovascular life stage Adult trackName ENCODE Natural killer cell (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR808HWS] [Life stage: Adult]
NGENC26EDLTL62 Download track ENCODE Gastrocnemius medialis (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR098OLN] [Life stage: Adult]
Show metadata Identifier NGENC26EDLTL62 Data Source ENCODE Download track Download Number of intervals 29,769 bp covered 53,386,561 Output type pseudoreplicated peaks Genome build hg38 cell type Gastrocnemius medialis Biosample type Tissue Biosamples term id UBERON:0011907 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR098OLN Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1, 2_2 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 905,255 Downloaded date 06/12/2022 Release date 09/22/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF038QHN.bed.gz Processed file md5 154fd9574e3d499228583c4c29b8db45 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF038QHN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF038QHN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF038QHN/@@download/ENCFF038QHN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF038QHN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ec9c53e18e8d123baca7ba3bc5730e62 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE167690;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11 system category Muscular life stage Adult trackName ENCODE Gastrocnemius medialis (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR098OLN] [Life stage: Adult]
NGENC26GAHUFCV Download track ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR010SZN] [Life stage: Adult]
Show metadata Identifier NGENC26GAHUFCV Data Source ENCODE Download track Download Number of intervals 220,782 bp covered 43,407,831 Output type peaks pValue=0.05 Genome build hg38 cell type Caudate nucleus Biosample type Tissue Biosamples term id UBERON:0001873 Tissue category Brain ENCODE Experiment id ENCSR010SZN Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,425,060 Downloaded date 06/12/2022 Release date 04/16/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF244VUT.bed.gz Processed file md5 6bc34cc0e9c9b2ba490498b38e8abd7e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF244VUT.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF244VUT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF244VUT/@@download/ENCFF244VUT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF244VUT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0001e82754dd5e9e9ce2f086c8238f5d Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens with Alzheimer's disease| head of caudate nucleus tissue female adult (90 or above years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE187103;Proj system category Nervous life stage Adult trackName ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR010SZN] [Life stage: Adult]
NGENC26GB3UV7K Download track ENCODE HEK293 (repl. 1) TF ChIP-seq ZSCAN16 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR864VJE] [Life stage: Embryonic]
Show metadata Identifier NGENC26GB3UV7K Data Source ENCODE Download track Download Number of intervals 2,451 bp covered 796,382 Output type IDR thresholded peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR864VJE Biological replicate(s) 1 Technical replicate 1_1 Antibody ZSCAN16 Assay TF ChIP-seq File format bed narrowPeak File size 48,905 Downloaded date 06/12/2022 Release date 08/05/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF178RUX.bed.gz Processed file md5 632fa43d58c94c5f9f9894be0b6b4484 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF178RUX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF178RUX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF178RUX/@@download/ENCFF178RUX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF178RUX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7a269ab92dcf69afdbc3788a3461ee1d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN16;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046 system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 1) TF ChIP-seq ZSCAN16 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR864VJE] [Life stage: Embryonic]
NGENC26GVQPCT2 Download track ENCODE Gastrocnemius medialis (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR423LXQ] [Life stage: Adult]
Show metadata Identifier NGENC26GVQPCT2 Data Source ENCODE Download track Download Number of intervals 56,508 bp covered 45,614,147 Output type pseudoreplicated peaks Genome build hg38 cell type Gastrocnemius medialis Biosample type Tissue Biosamples term id UBERON:0011907 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR423LXQ Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,045,094 Downloaded date 06/12/2022 Release date 11/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz Processed file md5 3cde72f5d294fe42cbb6d87fbc6d4195 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF784UEV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF784UEV/@@download/ENCFF784UEV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF784UEV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5e2de445418b8cc1a8a6eb89c8875a98 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE175242;Project=ENCODE;Award=U54HG006991;Experiment_ system category Muscular life stage Adult trackName ENCODE Gastrocnemius medialis (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR423LXQ] [Life stage: Adult]
NGENC26H7RPWRF Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR271XMW] [Life stage: Child]
Show metadata Identifier NGENC26H7RPWRF Data Source ENCODE Download track Download Number of intervals 17,660 bp covered 6,031,820 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR271XMW Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody EP300 Assay TF ChIP-seq File format bed narrowPeak File size 318,770 Downloaded date 06/12/2022 Release date 08/21/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076TMZ.bed.gz Processed file md5 82fffd1bbecf8bc1b5064c47a29a20fb wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076TMZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076TMZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF076TMZ/@@download/ENCFF076TMZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF076TMZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c30a4cf12bee9ebe097e2dcd3efa172e Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170142;Project=ENCODE;Award=UM1HG009411;Experi system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq EP300 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR271XMW] [Life stage: Child]
NGENC26IYTJBNH Download track ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Life stage: Embryonic]
Show metadata Identifier NGENC26IYTJBNH Data Source ENCODE Download track Download Number of intervals 16,814 bp covered 1,310,449 Output type transcription start sites Genome build hg38 cell type IMR-90 Biosample type Cell line Biosamples term id EFO:0001196 Tissue category Lung ENCODE Experiment id ENCSR000CKR Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay CAGE-Seq File format bed tss_peak File size 918,666 Downloaded date 06/04/2018 Release date 08/04/2016 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/CAGE/tss_peak/hg38/ENCFF935HLU.bed.gz Processed file md5 c901cedaddaee79d12548935858ce3b0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/CAGE/tss_peak/hg38/ENCFF935HLU.bed.gz -P GADB/Annotationtracks/ENCODE/data/CAGE/tss_peak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/CAGE/tss_peak/hg38/ENCFF935HLU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/CAGE/tss_peak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF935HLU/@@download/ENCFF935HLU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF935HLU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 86b392a249dd551ab4a33709fe993520 Data Category TSS [Transcription Start Site] Genomic feature type CAGE-Seq transcription start sites Track Description Biosample_summary=Homo sapiens IMR-90 cytosolic fraction;Lab=Piero Carninci, RIKEN;ENCODE_internal_tags=NR;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM979658,UCSC-ENCODE-hg19:wgEncodeEH002752;Project=ENCODE;Award=U54HG004557;Experiment_date_released=2012-05-02,2012-06-21 system category Respiratory life stage Embryonic trackName ENCODE IMR-90 (repl. 1) CAGE-Seq transcription start sites (tss_peak) [Experiment: ENCSR000CKR] [Life stage: Embryonic]
NGENC26LZKHYZY Download track ENCODE H9 (repl. 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR352HOU] [Life stage: Embryonic]
Show metadata Identifier NGENC26LZKHYZY Data Source ENCODE Download track Download Number of intervals 307,949 bp covered 178,502,725 Output type pseudoreplicated peaks Genome build hg38 cell type H9 Biosample type Stem cell Biosamples term id EFO:0003045 Tissue category Embryo ENCODE Experiment id ENCSR352HOU Biological replicate(s) 2 Technical replicate 2_1, 2_2 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 8,464,816 Downloaded date 06/12/2022 Release date 05/05/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz Processed file md5 4e35f9fa6528fd5d13ae9604cd4c9bc7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF430GXS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF430GXS/@@download/ENCFF430GXS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF430GXS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f0bc92bd795aa77dfc31c0177d0dd289 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE177239;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-09-08;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfilt system category Embryo life stage Embryonic trackName ENCODE H9 (repl. 2) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR352HOU] [Life stage: Embryonic]
NGENC26MI6CBRX Download track ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR470QCE] [Life stage: Adult]
Show metadata Identifier NGENC26MI6CBRX Data Source ENCODE Download track Download Number of intervals 33,545 bp covered 6,602,818 Output type peaks pValue=0.001 Genome build hg38 cell type CD4+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000624 Tissue category Blood ENCODE Experiment id ENCSR470QCE Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 385,536 Downloaded date 06/12/2022 Release date 09/22/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF971UON.bed.gz Processed file md5 0b92aeb7ad91320c747b8dfbc7b5baaa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF971UON.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF971UON.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF971UON/@@download/ENCFF971UON.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF971UON.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 88529f20f163ca496d33a9c533b50e06 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours;Lab=John Stamatoyannopoulos system category Cardiovascular life stage Adult trackName ENCODE CD4+ alpha-beta T cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR470QCE] [Life stage: Adult]
NGENC26MLJ44W4 Download track ENCODE HepG2 (repl. 1) TF ChIP-seq POLR2A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJM] [Life stage: Child]
Show metadata Identifier NGENC26MLJ44W4 Data Source ENCODE Download track Download Number of intervals 18,982 bp covered 6,266,971 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR000BJM Biological replicate(s) 1 Technical replicate 1_1 Antibody POLR2A Assay TF ChIP-seq File format bed narrowPeak File size 336,635 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268CWN.bed.gz Processed file md5 e732600935c3028ad4f7365d17e04037 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268CWN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF268CWN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF268CWN/@@download/ENCFF268CWN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF268CWN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f4b339517191eb042d3a4a03a11328cd Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728046;External_resources=GEO:GSM803368,UCSC-ENCODE-hg19:wgEncodeEH001550;Project system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1) TF ChIP-seq POLR2A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJM] [Life stage: Child]
NGENC26MVJ5ZWV Download track ENCODE T47D (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EQB] [Life stage: Adult]
Show metadata Identifier NGENC26MVJ5ZWV Data Source ENCODE Download track Download Number of intervals 248,368 bp covered 46,221,115 Output type peaks pValue=0.05 Genome build hg38 cell type T47D Biosample type Cell line Biosamples term id EFO:0001247 Tissue category Female Reproductive ENCODE Experiment id ENCSR000EQB Biological replicate(s) 1 Technical replicate 1_1, 1_3 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,812,156 Downloaded date 06/12/2022 Release date 11/18/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF147WHH.bed.gz Processed file md5 7f07f062b8c8f943ca16fba34385d52a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF147WHH.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF147WHH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF147WHH/@@download/ENCFF147WHH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF147WHH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f862844ca04c15300e79a2486192cfa6 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens T47D;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=adult 54 years;Reference=PMID:32728217;External_resources=SCREEN-GRCh38:T47D,GEO:GSM1024762,UCSC-ENCODE-hg19 system category Reproductive life stage Adult trackName ENCODE T47D (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EQB] [Life stage: Adult]
NGENC26NR7FDJ2 Download track ENCODE Placenta (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR074FPH] [Life stage: Embryonic]
Show metadata Identifier NGENC26NR7FDJ2 Data Source ENCODE Download track Download Number of intervals 22,910 bp covered 28,436,695 Output type pseudoreplicated peaks Genome build hg38 cell type Placenta Biosample type Tissue Biosamples term id UBERON:0001987 Tissue category Placenta ENCODE Experiment id ENCSR074FPH Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 632,257 Downloaded date 06/12/2022 Release date 01/29/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF589XMK.bed.gz Processed file md5 74c6e6cebd86c04556aaee47eae2d922 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF589XMK.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF589XMK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF589XMK/@@download/ENCFF589XMK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF589XMK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 91f1cd67baf9412597898409f931375f Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens placenta tissue male embryo (16 weeks);Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ccre_inputv2,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=SCREEN-GRCh38:placenta_male_embryo_16_weeks;Project=Roadmap;Award=U0 system category Placental life stage Embryonic trackName ENCODE Placenta (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR074FPH] [Life stage: Embryonic]
NGENC26NTRMBUL Download track ENCODE CD8+ alpha-beta memory cell (repl. 2) Histone ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR372MTE] [Life stage: Unknown]
Show metadata Identifier NGENC26NTRMBUL Data Source ENCODE Download track Download Number of intervals 69,339 bp covered 73,213,055 Output type pseudoreplicated peaks Genome build hg38 cell type CD8+ alpha-beta memory cell Biosample type Primary cell Biosamples term id CL:0000909 Tissue category Blood ENCODE Experiment id ENCSR372MTE Biological replicate(s) 2 Technical replicate 2_3 Antibody H3K4me1 Assay Histone ChIP-seq File format bed narrowPeak File size 1,686,985 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz Processed file md5 ea2b3985787cb7f76136e518de386192 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF141ZIW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF141ZIW/@@download/ENCFF141ZIW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF141ZIW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 eca4f4920773b306c21d46095afa1589 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSM772933,GEO:GSM772873;Project=Roadmap;Award=U01ES017155;Experiment_date_released=2013-07-31;Su system category Cardiovascular life stage Unknown trackName ENCODE CD8+ alpha-beta memory cell (repl. 2) Histone ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR372MTE] [Life stage: Unknown]
NGENC26NUY53OH Download track ENCODE K562 (repl. 1) eCLIP TARDBP peaks (narrowPeak) [Experiment: ENCSR584TCR] [Life stage: Adult]
Show metadata Identifier NGENC26NUY53OH Data Source ENCODE Download track Download Number of intervals 13,071 bp covered 968,330 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR584TCR Biological replicate(s) 1 Technical replicate 1_1 Antibody TARDBP Assay eCLIP File format bed narrowPeak File size 218,439 Downloaded date 06/04/2018 Release date 12/03/2016 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF022DCK.bed.gz Processed file md5 472e8bacd164e0a400ceb5519b7ea258 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF022DCK.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF022DCK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF022DCK/@@download/ENCFF022DCK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF022DCK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 799ee7d986eafcdef2604cc297fa7a1c Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91895;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=340_01.basedon_340_01.peak system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) eCLIP TARDBP peaks (narrowPeak) [Experiment: ENCSR584TCR] [Life stage: Adult]
NGENC26RSPODUD Download track ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR162RMW] [Life stage: Adult]
Show metadata Identifier NGENC26RSPODUD Data Source ENCODE Download track Download Number of intervals 163,202 bp covered 213,622,954 Output type pseudoreplicated peaks Genome build hg38 cell type CD14+ monocyte Biosample type Primary cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id ENCSR162RMW Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 4,689,503 Downloaded date 06/12/2022 Release date 03/13/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz Processed file md5 698753735ed670c3e2a155e59f0020bd wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF924MBC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF924MBC/@@download/ENCFF924MBC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF924MBC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2f68abff4767495e4c7cb931d0c294a4 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens CD14-positive monocyte male adult (51 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE209093;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1- system category Cardiovascular life stage Adult trackName ENCODE CD14+ monocyte (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR162RMW] [Life stage: Adult]
NGENC26TWFUNNH Download track ENCODE HepG2 (repl. 2) TF ChIP-seq RARA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR500WXT] [Life stage: Child]
Show metadata Identifier NGENC26TWFUNNH Data Source ENCODE Download track Download Number of intervals 29,760 bp covered 9,354,884 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR500WXT Biological replicate(s) 2 Technical replicate 2_1 Antibody RARA Assay TF ChIP-seq File format bed narrowPeak File size 504,049 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136KXL.bed.gz Processed file md5 24a863b88e2532a769b18cd06ca42a6a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136KXL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136KXL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF136KXL/@@download/ENCFF136KXL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF136KXL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f305b1deb7a6625403e3fa40ac47f028 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARA;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;Ex system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq RARA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR500WXT] [Life stage: Child]
NGENC26YIKP6B2 Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq TFAP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR103SZL] [Life stage: Child]
Show metadata Identifier NGENC26YIKP6B2 Data Source ENCODE Download track Download Number of intervals 29,274 bp covered 9,874,416 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR103SZL Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody TFAP4 Assay TF ChIP-seq File format bed narrowPeak File size 528,760 Downloaded date 06/12/2022 Release date 12/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF030SRU.bed.gz Processed file md5 ba6b5f417d380525f4feec80721a0da7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF030SRU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF030SRU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF030SRU/@@download/ENCFF030SRU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF030SRU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 46182868610aed9c2a5ff189125bdf37 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE95920,FactorBook:ENCSR103SZL;Project=ENCODE;Awar system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq TFAP4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR103SZL] [Life stage: Child]
NGENC2722XRRQW Download track ENCODE GM12878 (repl. 1) TF ChIP-seq TARDBP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR016UEH] [Life stage: Adult]
Show metadata Identifier NGENC2722XRRQW Data Source ENCODE Download track Download Number of intervals 4,687 bp covered 1,719,242 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR016UEH Biological replicate(s) 1 Technical replicate 1_1 Antibody TARDBP Assay TF ChIP-seq File format bed narrowPeak File size 84,654 Downloaded date 06/12/2022 Release date 02/04/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF986YTN.bed.gz Processed file md5 d66456cd9a3f8d701c0b18e6735ffeb5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF986YTN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF986YTN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF986YTN/@@download/ENCFF986YTN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF986YTN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7185c2e15a7d5f7c645d4a0ccf55720c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE95886;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-0 system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 1) TF ChIP-seq TARDBP IDR thresholded peaks (narrowPeak) [Experiment: ENCSR016UEH] [Life stage: Adult]
NGENC272PNYD2G Download track ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Life stage: Adult]
Show metadata Identifier NGENC272PNYD2G Data Source ENCODE Download track Download Number of intervals 104,308 bp covered 53,914,064 Output type pseudoreplicated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR956DNB Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,716,080 Downloaded date 06/12/2022 Release date 03/02/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF029TCM.bed.gz Processed file md5 bf927ef27f4f1b357130a74beddafdb3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF029TCM.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF029TCM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF029TCM/@@download/ENCFF029TCM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF029TCM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 951ab6a36a8fad31158bee6d5f796eb7 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE215595;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2022-04-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.overlap.bfil system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR956DNB] [Life stage: Adult]
NGENC272UDZ65R Download track ENCODE IMR-90 (repl. 2) Histone ChIP-seq H2AFZ peaks (narrowPeak) [Experiment: ENCSR124DYB] [Life stage: Embryonic]
Show metadata Identifier NGENC272UDZ65R Data Source ENCODE Download track Download Number of intervals 407,928 bp covered 92,422,421 Output type peaks Genome build hg38 cell type IMR-90 Biosample type Cell line Biosamples term id EFO:0001196 Tissue category Lung ENCODE Experiment id ENCSR124DYB Biological replicate(s) 2 Technical replicate 2_1 Antibody H2AFZ Assay Histone ChIP-seq File format bed narrowPeak File size 8,186,111 Downloaded date 06/10/2020 Release date 02/19/2017 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz Processed file md5 70c698acbeeef3b9f03cd490a5fb4654 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF787SLX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF787SLX/@@download/ENCFF787SLX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF787SLX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 932c1634f9808c1a22cd31752305d3a8 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ peaks Track Description Biosample_summary=Homo sapiens IMR-90;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=embryonic 16 weeks;Reference=NR;External_resources=GEO:GSM818008,GEO:GSM818007;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Submitted_track_name=r2.narr system category Respiratory life stage Embryonic trackName ENCODE IMR-90 (repl. 2) Histone ChIP-seq H2AFZ peaks (narrowPeak) [Experiment: ENCSR124DYB] [Life stage: Embryonic]