NGENC24FKGQ25D Download track ENCODE Psoas muscle (repl. 1) Histone ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR532BDE] [Life stage: Adult]
Show metadata Identifier NGENC24FKGQ25D Data Source ENCODE Download track Download Number of intervals 108,850 bp covered 114,738,042 Output type pseudoreplicated peaks Genome build hg38 cell type Psoas muscle Biosample type Tissue Biosamples term id UBERON:0008450 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR532BDE Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me1 Assay Histone ChIP-seq File format bed narrowPeak File size 2,538,494 Downloaded date 06/12/2022 Release date 06/06/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz Processed file md5 e58d5484f41eecda61132278138c39d9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF390GTJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF390GTJ/@@download/ENCFF390GTJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF390GTJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 65a354a449cfa8a900b27742dd10117c Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens psoas muscle tissue female adult (41 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 41 years;Reference=NR;External_resources=GEO:GSE208925;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Subm system category Muscular life stage Adult trackName ENCODE Psoas muscle (repl. 1) Histone ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR532BDE] [Life stage: Adult]
NGENC24GF6QTCZ Download track ENCODE Thyroid gland (repl. 1, 2) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR639NMN] [Life stage: Adult]
Show metadata Identifier NGENC24GF6QTCZ Data Source ENCODE Download track Download Number of intervals 1 bp covered 967 Output type replicated peaks Genome build hg38 cell type Thyroid gland Biosample type Tissue Biosamples term id UBERON:0002046 Tissue category Endocrine ENCODE Experiment id ENCSR639NMN Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me1 Assay Histone ChIP-seq File format bed narrowPeak File size 166 Downloaded date 06/12/2022 Release date 10/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz Processed file md5 3f9be29020f214a12c8fb5a7b34ea100 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF715RMV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF715RMV/@@download/ENCFF715RMV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF715RMV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 68836d0687962caf4c54716df051e184 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks Track Description Biosample_summary=Homo sapiens thyroid gland tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 54 years;Reference=PMID:32728046;External_resources=GEO:GSE96282;Project=ENCODE;Award=U54HG006991;Experi system category Endocrine life stage Adult trackName ENCODE Thyroid gland (repl. 1, 2) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR639NMN] [Life stage: Adult]
NGENC24ICAQMX3 Download track ENCODE Memory B cell (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR790NQG] [Life stage: Unknown]
Show metadata Identifier NGENC24ICAQMX3 Data Source ENCODE Download track Download Number of intervals 83,368 bp covered 108,523,065 Output type pseudoreplicated peaks Genome build hg38 cell type Memory B cell Biosample type Primary cell Biosamples term id CL:0000787 Tissue category Blood ENCODE Experiment id ENCSR790NQG Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 2,388,836 Downloaded date 06/12/2022 Release date 03/13/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF679KGJ.bed.gz Processed file md5 dc48e390b0263882cbdb648ec2764dcf wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF679KGJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF679KGJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF679KGJ/@@download/ENCFF679KGJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF679KGJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 dc079746a4885371a9a06e4fe64e43b2 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens IgD-negative memory B cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE209156;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-03-28;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt. system category Cardiovascular life stage Unknown trackName ENCODE Memory B cell (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR790NQG] [Life stage: Unknown]
NGENC24IPZA3XZ Download track ENCODE A549 (repl. 2) TF ChIP-seq CREB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRC] [Life stage: Adult]
Show metadata Identifier NGENC24IPZA3XZ Data Source ENCODE Download track Download Number of intervals 1,873 bp covered 442,028 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR000BRC Biological replicate(s) 2 Technical replicate 2_1 Antibody CREB1 Assay TF ChIP-seq File format bed narrowPeak File size 37,470 Downloaded date 09/10/2024 Release date 02/04/2021 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz Processed file md5 2053ea969a1f1a920d91298c64e57ef8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF403CRO/@@download/ENCFF403CRO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF403CRO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 00e39de52d9377553f50b0572fe30ee1 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002324,FactorBook:ENCSR000BRC,GEO:GSM1010726;Pr system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) TF ChIP-seq CREB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRC] [Life stage: Adult]
NGENC24IQITD62 Download track ENCODE K562 (repl. 1) TF ChIP-seq ZBTB40 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237VLT] [Life stage: Adult]
Show metadata Identifier NGENC24IQITD62 Data Source ENCODE Download track Download Number of intervals 19,670 bp covered 9,036,320 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR237VLT Biological replicate(s) 1 Technical replicate 1_1 Antibody ZBTB40 Assay TF ChIP-seq File format bed narrowPeak File size 350,398 Downloaded date 06/12/2022 Release date 03/20/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF553SPU.bed.gz Processed file md5 36957f4bdf7e359a643459ab4bda0301 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF553SPU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF553SPU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF553SPU/@@download/ENCFF553SPU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF553SPU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 148dc557f8870a10a20eee3139599c40 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91602,FactorBook:ENCSR237VLT;Project=ENCODE; system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq ZBTB40 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237VLT] [Life stage: Adult]
NGENC24J4HGLYU Download track ENCODE K562 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR121GEL] [Life stage: Adult]
Show metadata Identifier NGENC24J4HGLYU Data Source ENCODE Download track Download Number of intervals 25,423 bp covered 13,526,854 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR121GEL Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 616,089 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF980FEC.bed.gz Processed file md5 561f50a2891de1e043368a1c0bf0c3f3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF980FEC.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF980FEC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF980FEC/@@download/ENCFF980FEC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF980FEC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2ae610e32fa27ca8983724de939c305d Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 1 μM Crizotinib for 12 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172795;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=rep system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR121GEL] [Life stage: Adult]
NGENC24JEA4W4M Download track ENCODE BJ (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQF] [Life stage: Newborn]
Show metadata Identifier NGENC24JEA4W4M Data Source ENCODE Download track Download Number of intervals 88,661 bp covered 32,627,952 Output type pseudoreplicated peaks Genome build hg38 cell type BJ Biosample type Cell line Biosamples term id EFO:0002779 Tissue category Connective Tissue ENCODE Experiment id ENCSR000DQF Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,780,133 Downloaded date 06/12/2022 Release date 10/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz Processed file md5 f28d5d5ca6f8c60636bd829797dca2d9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF688LAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF688LAS/@@download/ENCFF688LAS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF688LAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 70a892c76554221362aa8e114ef11d32 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens BJ;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000443,GEO:GSM945207;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2 system category Skeletal life stage Newborn trackName ENCODE BJ (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DQF] [Life stage: Newborn]
NGENC24JGKNWXN Download track ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq RFX5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ECF] [Life stage: Embryonic]
Show metadata Identifier NGENC24JGKNWXN Data Source ENCODE Download track Download Number of intervals 2,188 bp covered 771,465 Output type IDR thresholded peaks Genome build hg38 cell type H1-hESC Biosample type Stem cell Biosamples term id EFO:0003042 Tissue category Embryo ENCODE Experiment id ENCSR000ECF Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody RFX5 Assay TF ChIP-seq File format bed narrowPeak File size 43,929 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF605EGG.bed.gz Processed file md5 e41b1487f26edafe8f496f39d0bb8297 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF605EGG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF605EGG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF605EGG/@@download/ENCFF605EGG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF605EGG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fb03edb6a8ebc23943f8cd6d8e7e53d0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens H1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001835,FactorBook:ENCSR000ECF,GEO:GSM9 system category Embryo life stage Embryonic trackName ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq RFX5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ECF] [Life stage: Embryonic]
NGENC24JLDBN32 Download track ENCODE A549 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR288YMH] [Life stage: Adult]
Show metadata Identifier NGENC24JLDBN32 Data Source ENCODE Download track Download Number of intervals 210,062 bp covered 171,500,122 Output type pseudoreplicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR288YMH Biological replicate(s) 1, 2, 3 Technical replicate 1_1, 2_1, 3_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 5,377,014 Downloaded date 07/10/2025 Release date 09/29/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF475VQY.bed.gz Processed file md5 be96e8834241407cfd07dd5acce0a0ff wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF475VQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF475VQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF475VQY/@@download/ENCFF475VQY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF475VQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 037ff5c7a4fef440a1eb83853cd99fca Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE114205;Project=GGR;Award=U01HG007900;Experiment_date_released=2018-04-23;Submitted_track_name=p system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2, 3) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR288YMH] [Life stage: Adult]
NGENC24JPELQ6L Download track ENCODE Pancreas (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR515CDW] [Life stage: Adult]
Show metadata Identifier NGENC24JPELQ6L Data Source ENCODE Download track Download Number of intervals 8,816 bp covered 6,219,091 Output type IDR thresholded peaks Genome build hg38 cell type Pancreas Biosample type Tissue Biosamples term id UBERON:0001264 Tissue category Digestive ENCODE Experiment id ENCSR515CDW Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 198,242 Downloaded date 06/12/2022 Release date 02/25/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF078RNL.bed.gz Processed file md5 157c5d7a54390910e5555abcb5473c48 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF078RNL.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF078RNL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF078RNL/@@download/ENCFF078RNL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF078RNL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a92801a07d601be7fb762751d9b47321 Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,ENTEx;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172605;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2 system category Digestive life stage Adult trackName ENCODE Pancreas (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR515CDW] [Life stage: Adult]
NGENC24JQD3FP6 Download track ENCODE A549 (repl. 3) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR027BPE] [Life stage: Adult]
Show metadata Identifier NGENC24JQD3FP6 Data Source ENCODE Download track Download Number of intervals 74,397 bp covered 86,250,935 Output type pseudoreplicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR027BPE Biological replicate(s) 3 Technical replicate 3_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 2,091,242 Downloaded date 07/10/2025 Release date 10/02/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF876MSY.bed.gz Processed file md5 75fbbfad9069fa8e09e28f726f561c82 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF876MSY.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF876MSY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF876MSY/@@download/ENCFF876MSY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF876MSY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e8e73ac2f87b8a1ba33c654d045c598f Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 minutes;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE174911;Project=GGR;Award=U01HG007900;Experiment_date_released=2017-10-19;Submitted_track_nam system category Respiratory life stage Adult trackName ENCODE A549 (repl. 3) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR027BPE] [Life stage: Adult]
NGENC24KEUJFYB Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq DNMT3B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR156CWW] [Life stage: Child]
Show metadata Identifier NGENC24KEUJFYB Data Source ENCODE Download track Download Number of intervals 9,069 bp covered 4,339,994 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR156CWW Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody DNMT3B Assay TF ChIP-seq File format bed narrowPeak File size 181,380 Downloaded date 06/12/2022 Release date 12/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076IPK.bed.gz Processed file md5 f5826b90799a842798033d370e949c97 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076IPK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF076IPK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF076IPK/@@download/ENCFF076IPK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF076IPK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 15b643590f8d24baad7ad4a4a6b34afe Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT3B;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244; system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq DNMT3B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR156CWW] [Life stage: Child]
NGENC24L33QJYM Download track ENCODE DND-41 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARZ] [Life stage: Child]
Show metadata Identifier NGENC24L33QJYM Data Source ENCODE Download track Download Number of intervals 49,263 bp covered 27,651,946 Output type pseudoreplicated peaks Genome build hg38 cell type DND-41 Biosample type Cell line Biosamples term id EFO:0007074 Tissue category Blood ENCODE Experiment id ENCSR000ARZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,081,209 Downloaded date 06/12/2022 Release date 10/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF434SAB.bed.gz Processed file md5 4226427a3cf523def2c4494660203a61 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF434SAB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF434SAB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF434SAB/@@download/ENCFF434SAB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF434SAB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 87098d2e2f5b447b993043c97264c508 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens DND-41;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 13 years;Reference=PMID:32728046;External_resources=GEO:GSM1003551,UCSC-ENCODE-hg19:wgEncodeEH002433;Project=ENCODE;Award=U54HG004570;Experiment_date_released=20 system category Cardiovascular life stage Child trackName ENCODE DND-41 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ARZ] [Life stage: Child]
NGENC24LCGJTIX Download track ENCODE Placenta (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR503RWO] [Life stage: Embryonic]
Show metadata Identifier NGENC24LCGJTIX Data Source ENCODE Download track Download Number of intervals 209,330 bp covered 40,509,336 Output type peaks pValue=0.05 Genome build hg38 cell type Placenta Biosample type Tissue Biosamples term id UBERON:0001987 Tissue category Placenta ENCODE Experiment id ENCSR503RWO Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,338,972 Downloaded date 06/12/2022 Release date 09/28/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF519KPC.bed.gz Processed file md5 aa1ba51b9dafde5f6ab02dfe472e7b1e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF519KPC.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF519KPC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF519KPC/@@download/ENCFF519KPC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF519KPC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2b3e0b0c81d22ce0d04c851f54d6bcfc Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens placenta tissue male embryo;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE170355;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-09-28;Submitted_track_name=nucl system category Placental life stage Embryonic trackName ENCODE Placenta (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR503RWO] [Life stage: Embryonic]
NGENC24MUWDP42 Download track ENCODE Lower motor neurons (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR812ZKP] [Life stage: Adult]
Show metadata Identifier NGENC24MUWDP42 Data Source ENCODE Download track Download Number of intervals 269,838 bp covered 227,775,623 Output type pseudoreplicated peaks Genome build hg38 cell type Lower motor neurons Biosample type In vitro differentiated cells Biosamples term id CL:0000100 Tissue category Blood ENCODE Experiment id ENCSR812ZKP Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 6,670,977 Downloaded date 06/12/2022 Release date 10/13/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF332XUZ.bed.gz Processed file md5 b798d61c3d54260ee76303db807c31bd wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF332XUZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF332XUZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF332XUZ/@@download/ENCFF332XUZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF332XUZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 9ef6b8fc710d036a0e91bee3df4b48c9 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens from a donor with amyotrophic lateral sclerosis| motor neuron;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 49 years;Reference=PMID:35045337;External_resources=GEO:GSE188037;Project=ENCODE;Award=UM1HG009442;Experiment_date_releas system category Cardiovascular life stage Adult trackName ENCODE Lower motor neurons (repl. 1) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR812ZKP] [Life stage: Adult]
NGENC24NFPTLXN Download track ENCODE SK-N-SH (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR657OGA] [Life stage: Child]
Show metadata Identifier NGENC24NFPTLXN Data Source ENCODE Download track Download Number of intervals 22,720 bp covered 14,864,891 Output type pseudoreplicated peaks Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR657OGA Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 508,381 Downloaded date 06/12/2022 Release date 12/11/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF034HHZ.bed.gz Processed file md5 8f5aa3bfbca9e6eb97e7e34924fcebb4 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF034HHZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF034HHZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF034HHZ/@@download/ENCFF034HHZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF034HHZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2f23a6c0125a374ebfe1af9fa1f4e9e7 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96296;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-01-12,2015-08-03;Submitted_track_ system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR657OGA] [Life stage: Child]
NGENC24OIV3SBN Download track ENCODE K562 (repl. 2) eCLIP FXR1 peaks (narrowPeak) [Experiment: ENCSR248TXP] [Life stage: Adult]
Show metadata Identifier NGENC24OIV3SBN Data Source ENCODE Download track Download Number of intervals 13,338 bp covered 957,820 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR248TXP Biological replicate(s) 2 Technical replicate 2_1 Antibody FXR1 Assay eCLIP File format bed narrowPeak File size 213,960 Downloaded date 05/15/2024 Release date 01/13/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF568WRV.bed.gz Processed file md5 5b516c31a6fc3ad97f8ecf8e1484d895 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF568WRV.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF568WRV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF568WRV/@@download/ENCFF568WRV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF568WRV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5bf64419198b1cb88668559bd672b33d Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284866;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=encode4_batch16.4036_CLIP2_CLIP.umi.r1.fq.genome-ma system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) eCLIP FXR1 peaks (narrowPeak) [Experiment: ENCSR248TXP] [Life stage: Adult]
NGENC24QHYCCPE Download track ENCODE Trophoblast (repl. 1) Histone ChIP-seq H2AK5ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR427RFW] [Life stage: Embryonic]
Show metadata Identifier NGENC24QHYCCPE Data Source ENCODE Download track Download Number of intervals 54,521 bp covered 15,718,170 Output type pseudoreplicated peaks Genome build hg38 cell type Trophoblast Biosample type Cell Biosamples term id UBERON:0000088 Tissue category Embryo ENCODE Experiment id ENCSR427RFW Biological replicate(s) 1 Technical replicate 1_1 Antibody H2AK5ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,216,754 Downloaded date 06/12/2022 Release date 11/13/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892OBN.bed.gz Processed file md5 0b34eef925f9d9f541bf713c67adec79 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892OBN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF892OBN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF892OBN/@@download/ENCFF892OBN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF892OBN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 112f884e19affc70b4f98415ae2d1da2 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AK5ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens trophoblast cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM908939,GEO:GSM906388;Project=Roadmap;Award=U01ES017166;Experiment_date_released=2013-07-31;Subm system category Embryo life stage Embryonic trackName ENCODE Trophoblast (repl. 1) Histone ChIP-seq H2AK5ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR427RFW] [Life stage: Embryonic]
NGENC24RW57ACW Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq ILK IDR thresholded peaks (narrowPeak) [Experiment: ENCSR648INT] [Life stage: Adult]
Show metadata Identifier NGENC24RW57ACW Data Source ENCODE Download track Download Number of intervals 1,463 bp covered 421,640 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR648INT Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody ILK Assay TF ChIP-seq File format bed narrowPeak File size 29,722 Downloaded date 06/12/2022 Release date 12/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF055LPP.bed.gz Processed file md5 88f142bf8888058483e06ab01486f26f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF055LPP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF055LPP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF055LPP/@@download/ENCFF055LPP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF055LPP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e32f17669b6aea6fa9d0968dd2101f35 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 stably expressing ILK;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91950,FactorBook:ENCSR648INT;Project= system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq ILK IDR thresholded peaks (narrowPeak) [Experiment: ENCSR648INT] [Life stage: Adult]
NGENC24SFKQFQA Download track ENCODE Melanocyte (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR505THJ] [Life stage: Newborn]
Show metadata Identifier NGENC24SFKQFQA Data Source ENCODE Download track Download Number of intervals 146,803 bp covered 181,170,964 Output type pseudoreplicated peaks Genome build hg38 cell type Melanocyte Biosample type Primary cell Biosamples term id CL:0000148 Tissue category Skin ENCODE Experiment id ENCSR505THJ Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 3,544,513 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz Processed file md5 13723450c1d120c8bd33ba93c0dc1184 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF308RSM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF308RSM/@@download/ENCFF308RSM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF308RSM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0d08c747e095a6556ae7b7207fd6040c Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens foreskin melanocyte male newborn;Lab=Joseph Costello, UCSF;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,dbGaP,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM958160;Project=Roadmap;Award=U01ES017154;Experiment_date_released=2013 system category Integumentary life stage Newborn trackName ENCODE Melanocyte (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR505THJ] [Life stage: Newborn]
NGENC24SPZ7RAZ Download track ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR013KEC] [Life stage: Embryonic]
Show metadata Identifier NGENC24SPZ7RAZ Data Source ENCODE Download track Download Number of intervals 97,262 bp covered 55,136,536 Output type replicated peaks Genome build hg38 cell type Mesenchymal stem cell Biosample type Stem cell Biosamples term id CL:0000134 Tissue category Connective Tissue ENCODE Experiment id ENCSR013KEC Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 2,532,657 Downloaded date 06/12/2022 Release date 10/20/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF213EMG.bed.gz Processed file md5 fc1bec0feb97112f0d00ed45d1ab4535 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF213EMG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF213EMG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF213EMG/@@download/ENCFF213EMG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF213EMG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1f44564750ea553c51abf6a03cc7dc58 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens mesenchymal stem cell originated from H1;Lab=Bing Ren, UCSD;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM767342,GEO:GSM767341,SCREEN-GRCh38:mesenchymal_st system category Skeletal life stage Embryonic trackName ENCODE Mesenchymal stem cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR013KEC] [Life stage: Embryonic]
NGENC24U2OT7FP Download track ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR783SNV] [Life stage: Adult]
Show metadata Identifier NGENC24U2OT7FP Data Source ENCODE Download track Download Number of intervals 52,895 bp covered 97,219,770 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR783SNV Biological replicate(s) 2, 3 Technical replicate 2_1, 3_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,562,622 Downloaded date 06/12/2022 Release date 10/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF276IWQ.bed.gz Processed file md5 67680c77b0d4519adf099ea914065ee1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF276IWQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF276IWQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF276IWQ/@@download/ENCFF276IWQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF276IWQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1d53b96e57405c9f09f30cde65f095f3 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens A549;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91337;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=rep2_vs_rep3.overlap.bfilt.narrowPeak.bb;ENCOD system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2, 3) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR783SNV] [Life stage: Adult]
NGENC24UHRBPK6 Download track ENCODE Kidney (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR096EZX] [Life stage: Embryonic]
Show metadata Identifier NGENC24UHRBPK6 Data Source ENCODE Download track Download Number of intervals 35,403 bp covered 25,649,050 Output type pseudoreplicated peaks Genome build hg38 cell type Kidney Biosample type Tissue Biosamples term id UBERON:0002113 Tissue category Kidney ENCODE Experiment id ENCSR096EZX Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 855,818 Downloaded date 05/15/2024 Release date 01/17/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF500AUF.bed.gz Processed file md5 caf5db38672e804278ced0e99ce6627f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF500AUF.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF500AUF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF500AUF/@@download/ENCFF500AUF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF500AUF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 764b8a2b13bcf0be5e377eeefcd0afe7 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens kidney tissue female embryo (120 days);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 120 days;Reference=PMID:32728046;External_resources=GEO:GSM621438,SCREEN-GRCh38:kidn system category Renal life stage Embryonic trackName ENCODE Kidney (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR096EZX] [Life stage: Embryonic]
NGENC24UUKMSJM Download track ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF362 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032LZZ] [Life stage: Child]
Show metadata Identifier NGENC24UUKMSJM Data Source ENCODE Download track Download Number of intervals 6,970 bp covered 3,229,042 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR032LZZ Biological replicate(s) 2 Technical replicate 2_1 Antibody ZNF362 Assay TF ChIP-seq File format bed narrowPeak File size 134,327 Downloaded date 06/12/2022 Release date 07/07/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF272WDY.bed.gz Processed file md5 e1bc5457c4a211a835d9fb74fcdc20ac wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF272WDY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF272WDY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF272WDY/@@download/ENCFF272WDY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF272WDY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c55bfe7d754c99064b539f3256ac135d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169928;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 2) TF ChIP-seq ZNF362 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR032LZZ] [Life stage: Child]
NGENC24VC5FY2L Download track ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq NR3C1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR471EKW] [Life stage: Adult]
Show metadata Identifier NGENC24VC5FY2L Data Source ENCODE Download track Download Number of intervals 40,657 bp covered 17,870,435 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR471EKW Biological replicate(s) 1, 2, 3 Technical replicate 1_1, 2_1, 3_1 Antibody NR3C1 Assay TF ChIP-seq File format bed narrowPeak File size 756,379 Downloaded date 07/10/2025 Release date 01/02/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358BKS.bed.gz Processed file md5 3d80eb12974321189abf9f2c20f506b5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358BKS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF358BKS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF358BKS/@@download/ENCFF358BKS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF358BKS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cd7af32e6def745d486368701d260465 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 minutes;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR471EKW,GEO:GSE175274;Project=GGR;Award=U01HG007900;Exper system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq NR3C1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR471EKW] [Life stage: Adult]
NGENC24VI2VEXL Download track ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOP] [Life stage: Adult]
Show metadata Identifier NGENC24VI2VEXL Data Source ENCODE Download track Download Number of intervals 104,168 bp covered 20,882,590 Output type IDR thresholded peaks Genome build hg38 cell type MCF 10A Biosample type Cell line Biosamples term id EFO:0001200 Tissue category Female Reproductive ENCODE Experiment id ENCSR000DOP Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody FOS Assay TF ChIP-seq File format bed narrowPeak File size 1,722,267 Downloaded date 09/10/2024 Release date 12/27/2020 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz Processed file md5 e5b3e007c922a9ce48c417b5b15538ba wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF124AQH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF124AQH/@@download/ENCFF124AQH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF124AQH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d67209599dbe6fd899eda25748c174a8 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF 10A stably expressing SRC treated with 1 μM afimoxifene for 12 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 36 years;Reference=NR;External_resources=G system category Reproductive life stage Adult trackName ENCODE MCF 10A (repl. 1, 2) TF ChIP-seq FOS IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOP] [Life stage: Adult]
NGENC24VJ44OET Download track ENCODE HEK293 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR910LIE] [Life stage: Embryonic]
Show metadata Identifier NGENC24VJ44OET Data Source ENCODE Download track Download Number of intervals 146,935 bp covered 161,465,572 Output type pseudoreplicated peaks Genome build hg38 cell type HEK293 Biosample type Cell line Biosamples term id EFO:0001182 Tissue category Kidney ENCODE Experiment id ENCSR910LIE Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 3,501,084 Downloaded date 06/12/2022 Release date 10/28/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz Processed file md5 bf19580a0863a2dfaf52ddfefac97653 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF988GDG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF988GDG/@@download/ENCFF988GDG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF988GDG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ae40fe68985281b9dcff57e7b0ba3bb3 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens HEK293;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE175320;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2017-06-01;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt system category Renal life stage Embryonic trackName ENCODE HEK293 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR910LIE] [Life stage: Embryonic]
NGENC24VQOOCI6 Download track ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR163BSC] [Life stage: Adult]
Show metadata Identifier NGENC24VQOOCI6 Data Source ENCODE Download track Download Number of intervals 224,928 bp covered 41,456,262 Output type peaks pValue=0.05 Genome build hg38 cell type Caudate nucleus Biosample type Tissue Biosamples term id UBERON:0001873 Tissue category Brain ENCODE Experiment id ENCSR163BSC Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 2,539,306 Downloaded date 06/12/2022 Release date 01/08/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF378OOW.bed.gz Processed file md5 e92c7eea0615f7fc93243b36a8f3b7a5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF378OOW.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF378OOW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF378OOW/@@download/ENCFF378OOW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF378OOW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a1634d186c1afe92a6642ffaf6be19a7 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens with mild cognitive impairment| head of caudate nucleus tissue female adult (90 or above years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE17053 system category Nervous life stage Adult trackName ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR163BSC] [Life stage: Adult]
NGENC24XUSIBM5 Download track ENCODE K562 (repl. 2) TF ChIP-seq STAT5B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR663NFC] [Life stage: Adult]
Show metadata Identifier NGENC24XUSIBM5 Data Source ENCODE Download track Download Number of intervals 299 bp covered 79,000 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR663NFC Biological replicate(s) 2 Technical replicate 2_1 Antibody STAT5B Assay TF ChIP-seq File format bed narrowPeak File size 6,089 Downloaded date 06/12/2022 Release date 03/30/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF407ANO.bed.gz Processed file md5 6193bfbaa8856ae48929be26112cd668 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF407ANO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF407ANO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF407ANO/@@download/ENCFF407ANO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF407ANO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8d55a2c7263748ec106c024f3e334221 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE175046;Project=ENCODE;Award=UM1HG009442;E system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq STAT5B IDR thresholded peaks (narrowPeak) [Experiment: ENCSR663NFC] [Life stage: Adult]
NGENC24YCZPKJ5 Download track ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR644KPP] [Life stage: Adult]
Show metadata Identifier NGENC24YCZPKJ5 Data Source ENCODE Download track Download Number of intervals 19,947 bp covered 10,135,688 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR644KPP Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 485,611 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF201FDO.bed.gz Processed file md5 a67abb6d9173bcd6f54070a13f60f63c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF201FDO.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF201FDO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF201FDO/@@download/ENCFF201FDO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF201FDO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b5190ceddf03cfb45e84fb2f1204ba96 Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 10 nM Vorinostat for 24 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172860;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-16,2021-03-15;Submitted_tr system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR644KPP] [Life stage: Adult]
NGENC24YSGX7JT Download track ENCODE K562 (repl. 2) eCLIP NIPBL peaks (narrowPeak) [Experiment: ENCSR891RIC] [Life stage: Adult]
Show metadata Identifier NGENC24YSGX7JT Data Source ENCODE Download track Download Number of intervals 20,494 bp covered 953,982 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR891RIC Biological replicate(s) 2 Technical replicate 2_1 Antibody NIPBL Assay eCLIP File format bed narrowPeak File size 308,963 Downloaded date 06/10/2020 Release date 08/16/2018 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF983YQJ.bed.gz Processed file md5 a19093365c3b6a98974e0686fc100540 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF983YQJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF983YQJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF983YQJ/@@download/ENCFF983YQJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF983YQJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1e55746e7e30b8033e80dc90d9db44c4 Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE178034;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=565_02.basedon_565_02.peaks.l2inputnormn system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) eCLIP NIPBL peaks (narrowPeak) [Experiment: ENCSR891RIC] [Life stage: Adult]
NGENC24YZAWOWR Download track ENCODE HeLa-S3 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR340WQU] [Life stage: Adult]
Show metadata Identifier NGENC24YZAWOWR Data Source ENCODE Download track Download Number of intervals 33,543 bp covered 49,565,422 Output type pseudoreplicated peaks Genome build hg38 cell type HeLa-S3 Biosample type Cell line Biosamples term id EFO:0002791 Tissue category Female Reproductive ENCODE Experiment id ENCSR340WQU Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 940,359 Downloaded date 06/12/2022 Release date 10/20/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FYV.bed.gz Processed file md5 b7e2087cde52427fe04cf86c979bac9a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FYV.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF290FYV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF290FYV/@@download/ENCFF290FYV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF290FYV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a9c95a9332adfba3cdc72953b831bfb8 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens HeLa-S3;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=adult 31 years;Reference=NR;External_resources=GEO:GSE96127;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-11-08,2011-02-10;Submitted_t system category Reproductive life stage Adult trackName ENCODE HeLa-S3 (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR340WQU] [Life stage: Adult]
NGENC252JFSUHS Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq IRF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EGT] [Life stage: Adult]
Show metadata Identifier NGENC252JFSUHS Data Source ENCODE Download track Download Number of intervals 13,415 bp covered 4,639,022 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000EGT Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody IRF1 Assay TF ChIP-seq File format bed narrowPeak File size 243,883 Downloaded date 09/10/2024 Release date 02/12/2021 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF043KAR.bed.gz Processed file md5 a6671209fc1e0306dd6674710d53f2f0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF043KAR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF043KAR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF043KAR/@@download/ENCFF043KAR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF043KAR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 71483397c978dc9374e6eb7cf64ea414 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with Interferon gamma for 6 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSM935549,Factor system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq IRF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EGT] [Life stage: Adult]
NGENC252LNG4QF Download track ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR516CKJ] [Life stage: Unknown]
Show metadata Identifier NGENC252LNG4QF Data Source ENCODE Download track Download Number of intervals 88,679 bp covered 91,635,883 Output type pseudoreplicated peaks Genome build hg38 cell type CD8+ alpha-beta memory cell Biosample type Primary cell Biosamples term id CL:0000909 Tissue category Blood ENCODE Experiment id ENCSR516CKJ Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K4me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 2,533,579 Downloaded date 06/12/2022 Release date 05/06/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF949HWE.bed.gz Processed file md5 ff27ded1a45e275f94bcb3cb2f4b46c2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF949HWE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF949HWE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF949HWE/@@download/ENCFF949HWE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF949HWE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b35d566c132fc0a9f0da670556fd89fc Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens with multiple sclerosis| CD8-positive, alpha-beta memory T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=YaleImmuneCells;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE177137;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-0 system category Cardiovascular life stage Unknown trackName ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR516CKJ] [Life stage: Unknown]
NGENC252UNOAOX Download track ENCODE Trophoblast (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR121ZSL] [Life stage: Embryonic]
Show metadata Identifier NGENC252UNOAOX Data Source ENCODE Download track Download Number of intervals 468,498 bp covered 94,826,036 Output type peaks pValue=0.05 Genome build hg38 cell type Trophoblast Biosample type Cell Biosamples term id UBERON:0000088 Tissue category Embryo ENCODE Experiment id ENCSR121ZSL Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 5,187,256 Downloaded date 06/12/2022 Release date 11/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF637HSK.bed.gz Processed file md5 b43591edcf196b231c7132994efd3a28 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF637HSK.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF637HSK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF637HSK/@@download/ENCFF637HSK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF637HSK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 c293dfb37068e2b641dc4f0c33e66e27 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens trophoblast cell embryo (21 weeks);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 21 weeks;Reference=PMID:32728217;Externa system category Embryo life stage Embryonic trackName ENCODE Trophoblast (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR121ZSL] [Life stage: Embryonic]
NGENC2544Y5CQV Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq MAFF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EEC] [Life stage: Child]
Show metadata Identifier NGENC2544Y5CQV Data Source ENCODE Download track Download Number of intervals 41,560 bp covered 10,250,840 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR000EEC Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody MAFF Assay TF ChIP-seq File format bed narrowPeak File size 804,476 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF256ARZ.bed.gz Processed file md5 4b1a6807222163e1b209630ac7f33b6c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF256ARZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF256ARZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF256ARZ/@@download/ENCFF256ARZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF256ARZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1eca83ce268095c1afe3bc0737cb261b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR000EEC,UCSC-ENCODE-hg19:wgEncodeEH system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq MAFF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EEC] [Life stage: Child]
NGENC254NTN4MB Download track ENCODE Parathyroid adenoma (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR249LNW] [Life stage: Adult]
Show metadata Identifier NGENC254NTN4MB Data Source ENCODE Download track Download Number of intervals 68,739 bp covered 54,405,143 Output type pseudoreplicated peaks Genome build hg38 cell type Parathyroid adenoma Biosample type Tissue Biosamples term id Not available Tissue category Endocrine ENCODE Experiment id ENCSR249LNW Biological replicate(s) 1 Technical replicate 1_1 Antibody H2AFZ Assay Histone ChIP-seq File format bed narrowPeak File size 1,688,932 Downloaded date 06/12/2022 Release date 01/30/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz Processed file md5 b90a786623906420d0984c3e99e75159 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF037TZH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF037TZH/@@download/ENCFF037TZH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF037TZH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7956671d6b2c27d578e1d0a941fa1271 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens parathyroid adenoma tissue male adult (65 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv2;Life_stage_age=adult 65 years;Reference=NR;External_resources=NR;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-12-01;Submitted_track_name= system category Endocrine life stage Adult trackName ENCODE Parathyroid adenoma (repl. 1) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR249LNW] [Life stage: Adult]
NGENC256FYOQHG Download track ENCODE K562 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR005BVE] [Life stage: Adult]
Show metadata Identifier NGENC256FYOQHG Data Source ENCODE Download track Download Number of intervals 42,808 bp covered 26,799,117 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR005BVE Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,012,600 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF217IZY.bed.gz Processed file md5 aaeb2d1e7bdb5e76d7c30198f04ae4f9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF217IZY.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF217IZY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF217IZY/@@download/ENCFF217IZY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF217IZY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fcbacdbbd4a868b272cdb294d015dbfc Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 1 μM SGC-CBP30 for 24 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172549;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=rep1 system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR005BVE] [Life stage: Adult]
NGENC2577YZOLF Download track ENCODE H9 (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR243FOM] [Life stage: Embryonic]
Show metadata Identifier NGENC2577YZOLF Data Source ENCODE Download track Download Number of intervals 341,632 bp covered 178,844,642 Output type pseudoreplicated peaks Genome build hg38 cell type H9 Biosample type Stem cell Biosamples term id EFO:0003045 Tissue category Embryo ENCODE Experiment id ENCSR243FOM Biological replicate(s) 1 Technical replicate 1_1, 1_2, 1_3, 1_4 Antibody H3K4me1 Assay Mint-ChIP-seq File format bed narrowPeak File size 9,726,111 Downloaded date 06/12/2022 Release date 05/05/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz Processed file md5 388f8b1bb40377d78e6bb38dd2121c23 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF836LGN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF836LGN/@@download/ENCFF836LGN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF836LGN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 ea10629d36ee72f625068f97bdd75291 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K4me1 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=embryonic 5 days;Reference=NR;External_resources=GEO:GSE176847;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2020-09-06,2020-07-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.overlap.bfilt system category Embryo life stage Embryonic trackName ENCODE H9 (repl. 1) Mint-ChIP-seq H3K4me1-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR243FOM] [Life stage: Embryonic]
NGENC25AFAAADB Download track ENCODE Middle frontal area BA46 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR060MJY] [Life stage: Adult]
Show metadata Identifier NGENC25AFAAADB Data Source ENCODE Download track Download Number of intervals 220,732 bp covered 2,969,267 Output type footprints Genome build hg38 cell type Middle frontal area BA46 Biosample type Tissue Biosamples term id UBERON:0006483 Tissue category Brain ENCODE Experiment id ENCSR060MJY Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,503,546 Downloaded date 06/12/2022 Release date 09/25/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF365JRP.bed.gz Processed file md5 e8d7d237d98ef23d4c24e094aa31536a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF365JRP.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF365JRP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF365JRP/@@download/ENCFF365JRP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF365JRP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8cd264d441c5a2a6e944a662ee57eafb Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens with mild cognitive impairment| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:G system category Nervous life stage Adult trackName ENCODE Middle frontal area BA46 (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR060MJY] [Life stage: Adult]
NGENC25AOARFEA Download track ENCODE K562 (repl. 2) TF ChIP-seq HMG20A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR126YJQ] [Life stage: Adult]
Show metadata Identifier NGENC25AOARFEA Data Source ENCODE Download track Download Number of intervals 524 bp covered 153,540 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR126YJQ Biological replicate(s) 2 Technical replicate 2_1 Antibody HMG20A Assay TF ChIP-seq File format bed narrowPeak File size 10,920 Downloaded date 06/12/2022 Release date 06/30/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530ZXJ.bed.gz Processed file md5 1039b7a1b239fb72f7a16e448d201ed2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530ZXJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530ZXJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF530ZXJ/@@download/ENCFF530ZXJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF530ZXJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 51d483df11a3430bb40c5e858cbd1e7f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170398;Project=ENCODE;Award=UM1HG009442;E system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq HMG20A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR126YJQ] [Life stage: Adult]
NGENC25BM2M5DO Download track ENCODE NCI-H929 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR359BGB] [Life stage: Adult]
Show metadata Identifier NGENC25BM2M5DO Data Source ENCODE Download track Download Number of intervals 13,913 bp covered 10,345,541 Output type pseudoreplicated peaks Genome build hg38 cell type NCI-H929 Biosample type Cell line Biosamples term id EFO:0001221 Tissue category Immune ENCODE Experiment id ENCSR359BGB Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 289,357 Downloaded date 06/12/2022 Release date 08/25/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz Processed file md5 4a13f1e45838c9ba79cd3a80d5802524 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF788JYE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF788JYE/@@download/ENCFF788JYE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF788JYE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 64aa2d5b49e540a1d0478d511389ef35 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens NCI-H929;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 62 years;Reference=NR;External_resources=GEO:GSE167675;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-08-28,2021-03-29;Submitted_track_name=rep1-pr1_vs_rep1-p system category Lymphatic life stage Adult trackName ENCODE NCI-H929 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR359BGB] [Life stage: Adult]
NGENC25CYIVND3 Download track ENCODE Smooth muscle cell (repl. 2) WGB-Seq methylation state at CHH (bed9+5 WGBS) [Experiment: ENCSR076OHG] [Life stage: Embryonic]
Show metadata Identifier NGENC25CYIVND3 Data Source ENCODE Download track Download Number of intervals 83,626,371 bp covered 83,626,371 Output type methylation state at CHH Genome build hg38 cell type Smooth muscle cell Biosample type In vitro differentiated cells Biosamples term id CL:0000192 Tissue category Muscle ENCODE Experiment id ENCSR076OHG Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 1,194,776,533 Downloaded date 06/12/2022 Release date 07/18/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF912STX.bed.gz Processed file md5 4be04201ef77ae6df0bd4ff4370cfe4e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF912STX.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF912STX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF912STX/@@download/ENCFF912STX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF912STX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 138ed0867c0240c6a00ca8e5e32facdc Data Category Methylation Genomic feature type WGB-Seq methylation state at CHH Track Description Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Lab=Richard Myers, HAIB;ENCODE_internal_tags=SESCC,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMCID:PMC7343189;External_resources=GEO:GSE127283;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-01-09;Subm system category Muscular life stage Embryonic trackName ENCODE Smooth muscle cell (repl. 2) WGB-Seq methylation state at CHH (bed9+5 WGBS) [Experiment: ENCSR076OHG] [Life stage: Embryonic]
NGENC25D2Q4EZT Download track ENCODE K562 (repl. 1) TF ChIP-seq FOXO4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426PTT] [Life stage: Adult]
Show metadata Identifier NGENC25D2Q4EZT Data Source ENCODE Download track Download Number of intervals 752 bp covered 199,609 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR426PTT Biological replicate(s) 1 Technical replicate 1_1 Antibody FOXO4 Assay TF ChIP-seq File format bed narrowPeak File size 15,052 Downloaded date 06/12/2022 Release date 07/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF465XOG.bed.gz Processed file md5 f999015bc4f995255d2191ca6599c778 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF465XOG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF465XOG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF465XOG/@@download/ENCFF465XOG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF465XOG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 98b7e74e64aef1b70ad32962973aa62a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO4;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE175247;Project=ENCODE;Award=UM1HG009442;Ex system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq FOXO4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426PTT] [Life stage: Adult]
NGENC25E3AYXMF Download track ENCODE K562 (repl. 2) TF ChIP-seq MCM7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR542WJU] [Life stage: Adult]
Show metadata Identifier NGENC25E3AYXMF Data Source ENCODE Download track Download Number of intervals 243 bp covered 77,386 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR542WJU Biological replicate(s) 2 Technical replicate 2_1 Antibody MCM7 Assay TF ChIP-seq File format bed narrowPeak File size 5,146 Downloaded date 06/12/2022 Release date 11/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF707MCT.bed.gz Processed file md5 c60a8b1551f2532bcfeaea519bd819d5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF707MCT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF707MCT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF707MCT/@@download/ENCFF707MCT.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF707MCT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 29f8b607b2263921b9fac5eb7391f396 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91855;Project=ENCODE;Award=U54HG006996;Exper system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq MCM7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR542WJU] [Life stage: Adult]
NGENC25EXP7FAF Download track ENCODE GM12878 (repl. 2) TF ChIP-seq NR2C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR784VIQ] [Life stage: Adult]
Show metadata Identifier NGENC25EXP7FAF Data Source ENCODE Download track Download Number of intervals 6,665 bp covered 2,181,534 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR784VIQ Biological replicate(s) 2 Technical replicate 2_1 Antibody NR2C1 Assay TF ChIP-seq File format bed narrowPeak File size 126,162 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF214YBJ.bed.gz Processed file md5 c54b838935342b15fff063ccf87ee267 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF214YBJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF214YBJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF214YBJ/@@download/ENCFF214YBJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF214YBJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0739c8317cb67188a3c97d92653cdb9a Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR784VIQ,GEO:GSE106044;Project=ENCODE;Award=U54HG006996;Exper system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 2) TF ChIP-seq NR2C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR784VIQ] [Life stage: Adult]
NGENC25FOCB3X7 Download track ENCODE MCF-7 (repl. 2) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR017CEO] [Life stage: Adult]
Show metadata Identifier NGENC25FOCB3X7 Data Source ENCODE Download track Download Number of intervals 7,229 bp covered 2,936,704 Output type IDR thresholded peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id ENCSR017CEO Biological replicate(s) 2 Technical replicate 2_1 Antibody CUX1 Assay TF ChIP-seq File format bed narrowPeak File size 137,920 Downloaded date 06/12/2022 Release date 11/29/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183WPI.bed.gz Processed file md5 7168b2e5dc611bfc9e9fe3a29d5f6c15 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183WPI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183WPI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF183WPI/@@download/ENCFF183WPI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF183WPI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 4b34558b18d8fe2d34cb13e58d6b9bdb Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR017CEO,GEO:GSE91415;Project=ENCODE system category Reproductive life stage Adult trackName ENCODE MCF-7 (repl. 2) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR017CEO] [Life stage: Adult]
NGENC25HBY2R7S Download track ENCODE Fibroblast (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000ENW] [Life stage: Unknown]
Show metadata Identifier NGENC25HBY2R7S Data Source ENCODE Download track Download Number of intervals 89,805 bp covered 15,856,997 Output type peaks pValue=0.001 Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Breast ENCODE Experiment id ENCSR000ENW Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,021,858 Downloaded date 06/12/2022 Release date 11/18/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF928SJG.bed.gz Processed file md5 eef18f1a59a9e0b5fceba517bd6c0d64 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF928SJG.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF928SJG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF928SJG/@@download/ENCFF928SJG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF928SJG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a6aee0115a9b91cfa8694d7229ddbeb6 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens fibroblast of mammary gland female;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=UCSC system category Reproductive life stage Unknown trackName ENCODE Fibroblast (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000ENW] [Life stage: Unknown]
NGENC25ILUHTVL Download track ENCODE GM12865 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMS] [Life stage: Unknown]
Show metadata Identifier NGENC25ILUHTVL Data Source ENCODE Download track Download Number of intervals 163,163 bp covered 30,934,428 Output type peaks pValue=0.001 Genome build hg38 cell type GM12865 Biosample type Cell line Biosamples term id EFO:0005338 Tissue category Blood ENCODE Experiment id ENCSR000EMS Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,903,138 Downloaded date 06/12/2022 Release date 02/08/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF103ZCC.bed.gz Processed file md5 8fba1c36ae782bce98c1528593cfe940 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF103ZCC.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF103ZCC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF103ZCC/@@download/ENCFF103ZCC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF103ZCC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f9f28ddd8892e31dc2513bfd18f50c40 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens GM12865;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=SCREEN-GRCh38:GM12865,GEO:GSM736561,UCSC-ENCODE-hg19:wgEnco system category Cardiovascular life stage Unknown trackName ENCODE GM12865 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMS] [Life stage: Unknown]
NGENC25JH2HN3G Download track ENCODE H7-hESC (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR000DSR] [Life stage: Embryonic]
Show metadata Identifier NGENC25JH2HN3G Data Source ENCODE Download track Download Number of intervals 27,750 bp covered 34,234,190 Output type replicated peaks Genome build hg38 cell type H7-hESC Biosample type Stem cell Biosamples term id EFO:0005904 Tissue category Embryo ENCODE Experiment id ENCSR000DSR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 774,998 Downloaded date 06/12/2022 Release date 09/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748FQD.bed.gz Processed file md5 0c5ae253b484bba2e345c6679dd245b8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748FQD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF748FQD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF748FQD/@@download/ENCFF748FQD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF748FQD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 83f35b1ff09135313011264a7f455ec8 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 replicated peaks Track Description Biosample_summary=Homo sapiens H7;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:22981225;External_resources=SCREEN-GRCh38:H7-hESC,GEO:GSM945185,UCSC-ENCODE-hg19:wgEncodeEH000925;Project=ENC system category Embryo life stage Embryonic trackName ENCODE H7-hESC (repl. 1, 2) Histone ChIP-seq H3K4me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR000DSR] [Life stage: Embryonic]