NGENC22TC3EDBL Download track ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR354FVG] [Life stage: Adult]
Show metadata Identifier NGENC22TC3EDBL Data Source ENCODE Download track Download Number of intervals 263,319 bp covered 87,298,057 Output type pseudoreplicated peaks Genome build hg38 cell type CD8+ alpha-beta naive T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id ENCSR354FVG Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K9me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 6,549,078 Downloaded date 06/12/2022 Release date 03/31/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF661ZKM.bed.gz Processed file md5 97c6c452ae5a0fb23a4f334926dd977a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF661ZKM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF661ZKM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF661ZKM/@@download/ENCFF661ZKM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF661ZKM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 12934ed29545271f35eb9b4915edf0ca Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K9me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE208967;Project= system category Cardiovascular life stage Adult trackName ENCODE CD8+ alpha-beta naive T cell (repl. 1) Mint-ChIP-seq H3K9me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR354FVG] [Life stage: Adult]
NGENC22UYD65M2 Download track ENCODE HS-27A (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EMF] [Life stage: Adult]
Show metadata Identifier NGENC22UYD65M2 Data Source ENCODE Download track Download Number of intervals 95,143 bp covered 19,165,581 Output type peaks pValue=0.05 Genome build hg38 cell type HS-27A Biosample type Cell line Biosamples term id EFO:0005283 Tissue category Bone ENCODE Experiment id ENCSR000EMF Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,017,544 Downloaded date 06/12/2022 Release date 11/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF037OAI.bed.gz Processed file md5 5bab5b3fd3b4abf4aa394adacd65f4b1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF037OAI.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF037OAI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF037OAI/@@download/ENCFF037OAI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF037OAI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1602dd73a45bd3821b54c3c8bfbd015c Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens HS-27A;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=GEO:GSM1024785,SCREEN-GRCh38:HS- system category Skeletal life stage Adult trackName ENCODE HS-27A (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR000EMF] [Life stage: Adult]
NGENC22V6WNQYJ Download track ENCODE WTC11 (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR016VPZ] [Life stage: Adult]
Show metadata Identifier NGENC22V6WNQYJ Data Source ENCODE Download track Download Number of intervals 1,949,888 bp covered 2,301,067,637 Output type chromatin interactions Genome build hg38 cell type WTC11 Biosample type Cell line Biosamples term id EFO:0009747 Tissue category Skin ENCODE Experiment id ENCSR016VPZ Biological replicate(s) 1 Technical replicate 1_1 Antibody CTCF Assay ChIA-PET File format bed bed4+19 interact File size 67,503,290 Downloaded date 09/20/2025 Release date 09/01/2021 Date added to FILER 10/30/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz Processed file md5 b101c446218b2e650c40e1c495e0df06 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF551YHB.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ Link out URL https://www.encodeproject.org/ Raw File URL https://www.encodeproject.org/files/ENCFF551YHB/@@download/ENCFF551YHB.bedpe.gz Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF551YHB.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ Raw file md5 89fc1d95394e6e8a56fba72ffd09ab38 Data Category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions Track Description Biosample_summary=Homo sapiens WTC11;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=4DN:4DNESHWX9JLY,GEO:GSE242575;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2021-11-03;Submitted_track_name=LHW0007V.e500.clusters.cis.BE3.gz; system category Integumentary life stage Adult trackName ENCODE WTC11 (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR016VPZ] [Life stage: Adult]
NGENC22VVO77OB Download track ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR629ZCB] [Life stage: Newborn]
Show metadata Identifier NGENC22VVO77OB Data Source ENCODE Download track Download Number of intervals 4,932 bp covered 266,782 Output type transcription start sites Genome build hg38 cell type Keratinocyte Biosample type Primary cell Biosamples term id CL:0000312 Tissue category Skin ENCODE Experiment id ENCSR629ZCB Biological replicate(s) 1, 2 Technical replicate 1_1 ,2_1 Antibody Not applicable Assay RAMPAGE File format bed idr_peak File size 129,292 Downloaded date 06/10/2020 Release date 02/07/2017 Date added to FILER 07/16/2020 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF521NKM.bed.gz Processed file md5 08d37d12b755070a9c57290c0c00e4a2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF521NKM.bed.gz -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ENCFF521NKM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/RAMPAGE/idr_peak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF521NKM/@@download/ENCFF521NKM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF521NKM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a4aa68db9b4aec827d57c9c3feba4891 Data Category TSS [Transcription Start Site] Genomic feature type RAMPAGE transcription start sites Track Description Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1 day;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE187682;Project=GGR;Award=U01HG007919;Experiment_date_released system category Integumentary life stage Newborn trackName ENCODE Keratinocyte (repl. 1, 2) RAMPAGE transcription start sites (idr_peak) [Experiment: ENCSR629ZCB] [Life stage: Newborn]
NGENC22W6QPX4M Download track ENCODE Fibroblast (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR555TFE] [Life stage: Embryonic]
Show metadata Identifier NGENC22W6QPX4M Data Source ENCODE Download track Download Number of intervals 148,126 bp covered 27,639,215 Output type peaks pValue=0.05 Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id ENCSR555TFE Biological replicate(s) 1 Technical replicate 1_5 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,631,714 Downloaded date 06/12/2022 Release date 11/11/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF238WOM.bed.gz Processed file md5 64fdff17645fc2d33f5742c80e84100c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF238WOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF238WOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF238WOM/@@download/ENCFF238WOM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF238WOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e909068621f28598c88575b6bf45c272 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 97 days;Referen system category Integumentary life stage Embryonic trackName ENCODE Fibroblast (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR555TFE] [Life stage: Embryonic]
NGENC22WJ24FFZ Download track ENCODE HCT116 (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR795ZKB] [Life stage: Adult]
Show metadata Identifier NGENC22WJ24FFZ Data Source ENCODE Download track Download Number of intervals 105,503 bp covered 25,727,985 Output type peaks pValue=0.001 Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id ENCSR795ZKB Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,217,373 Downloaded date 07/10/2025 Release date 04/01/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF676ZZP.bed.gz Processed file md5 b7ce7b92a4f78a69e998448be2a9c9fe wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF676ZZP.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF676ZZP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF676ZZP/@@download/ENCFF676ZZP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF676ZZP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d24c723abc1dd630b5b23b54d02c9987 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2 system category Digestive life stage Adult trackName ENCODE HCT116 (repl. 2) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR795ZKB] [Life stage: Adult]
NGENC22WOF72IZ Download track ENCODE Lung (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR510ITB] [Life stage: Embryonic]
Show metadata Identifier NGENC22WOF72IZ Data Source ENCODE Download track Download Number of intervals 54,735 bp covered 9,335,049 Output type peaks pValue=0.001 Genome build hg38 cell type Lung Biosample type Tissue Biosamples term id UBERON:0002048 Tissue category Lung ENCODE Experiment id ENCSR510ITB Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 611,154 Downloaded date 06/12/2022 Release date 09/19/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF994BEK.bed.gz Processed file md5 1fae4071435aec29614566772b03f2a5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF994BEK.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF994BEK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF994BEK/@@download/ENCFF994BEK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF994BEK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d0bb018eac591e0acefcf226cefefa37 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens left lung tissue male embryo (91 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 91 days;Reference=PMID:32728217;Exte system category Respiratory life stage Embryonic trackName ENCODE Lung (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR510ITB] [Life stage: Embryonic]
NGENC22X62X74N Download track ENCODE HG03439 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR376YMU] [Life stage: Adult]
Show metadata Identifier NGENC22X62X74N Data Source ENCODE Download track Download Number of intervals 87,944 bp covered 81,364,877 Output type IDR thresholded peaks Genome build hg38 cell type HG03439 Biosample type Cell line Biosamples term id EFO:0010880 Tissue category Blood ENCODE Experiment id ENCSR376YMU Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,933,728 Downloaded date 06/12/2022 Release date 01/14/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF922FPA.bed.gz Processed file md5 a813dad40713eb7da7147cec39b6885b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF922FPA.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF922FPA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF922FPA/@@download/ENCFF922FPA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF922FPA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 99362456cef80dcc6372b6ac8b71672e Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HG03439;Lab=Stephen Montgomery, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE172867;Project=ENCODE;Award=U01HG009431;Experiment_date_released=2021-02-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.nar system category Cardiovascular life stage Adult trackName ENCODE HG03439 (repl. 1) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR376YMU] [Life stage: Adult]
NGENC22YQFUYFY Download track ENCODE 22Rv1 (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR847XGE] [Life stage: Unknown]
Show metadata Identifier NGENC22YQFUYFY Data Source ENCODE Download track Download Number of intervals 85,038 bp covered 56,489,588 Output type conservative IDR thresholded peaks Genome build hg38 cell type 22Rv1 Biosample type Cell line Biosamples term id EFO:0002095 Tissue category Male Reproductive ENCODE Experiment id ENCSR847XGE Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 1,415,581 Downloaded date 07/10/2025 Release date 09/01/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz Processed file md5 ff5983da05f30b4bc0a1f6a61012072d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF850QZG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF850QZG/@@download/ENCFF850QZG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF850QZG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 70fa5138a5227c5d78a65c49636f2217 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens 22Rv1 treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=SCREEN-GRCh38 system category Reproductive life stage Unknown trackName ENCODE 22Rv1 (repl. 1, 2) TF ChIP-seq CTCF conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR847XGE] [Life stage: Unknown]
NGENC233OGZSNQ Download track ENCODE Renal pelvis (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR364TKL] [Life stage: Embryonic]
Show metadata Identifier NGENC233OGZSNQ Data Source ENCODE Download track Download Number of intervals 82,637 bp covered 15,514,434 Output type peaks pValue=0.05 Genome build hg38 cell type Renal pelvis Biosample type Tissue Biosamples term id UBERON:0001224 Tissue category Kidney ENCODE Experiment id ENCSR364TKL Biological replicate(s) 1 Technical replicate 1_4 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 879,344 Downloaded date 06/12/2022 Release date 11/07/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF088YMG.bed.gz Processed file md5 bbb6fd793c4611932d89f83a58cb3efe wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF088YMG.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF088YMG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF088YMG/@@download/ENCFF088YMG.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF088YMG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2904be7b9abe61da8ba917825d40147c Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens renal pelvis tissue male embryo (97 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=embryonic 97 days;Reference=PMID:32728217;E system category Renal life stage Embryonic trackName ENCODE Renal pelvis (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR364TKL] [Life stage: Embryonic]
NGENC233YB5CEC Download track ENCODE K562 (repl. 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult]
Show metadata Identifier NGENC233YB5CEC Data Source ENCODE Download track Download Number of intervals 4,407 bp covered 1,296,021 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR459FUE Biological replicate(s) 2 Technical replicate 2_1 Antibody ERF Assay TF ChIP-seq File format bed narrowPeak File size 82,297 Downloaded date 06/12/2022 Release date 07/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz Processed file md5 a2aa9a8766dfd46ccb72c98c7a73da5e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF526GOD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF526GOD/@@download/ENCFF526GOD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF526GOD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1b8d45273f8019958e95abfbf71b655f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170114;Project=ENCODE;Award=UM1HG009442;Expe system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq ERF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR459FUE] [Life stage: Adult]
NGENC234XT7J67 Download track ENCODE Heart (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR664PKM] [Life stage: Embryonic]
Show metadata Identifier NGENC234XT7J67 Data Source ENCODE Download track Download Number of intervals 341,098 bp covered 87,886,221 Output type peaks pValue=0.05 Genome build hg38 cell type Heart Biosample type Tissue Biosamples term id NCIT:C12727 Tissue category Heart ENCODE Experiment id ENCSR664PKM Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 3,782,779 Downloaded date 06/12/2022 Release date 11/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF897FCA.bed.gz Processed file md5 91aa1cf5e0919a2cdbe634bf80211380 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF897FCA.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF897FCA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF897FCA/@@download/ENCFF897FCA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF897FCA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 57ad8d1b88eee761ea8b43db1aa79d92 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens heart tissue embryo (59 days) and female embryo (76 days);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217; system category Cardiovascular life stage Embryonic trackName ENCODE Heart (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR664PKM] [Life stage: Embryonic]
NGENC235NF3KDB Download track ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq RAD21 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR495WGO] [Life stage: Adult]
Show metadata Identifier NGENC235NF3KDB Data Source ENCODE Download track Download Number of intervals 52,743 bp covered 20,666,243 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR495WGO Biological replicate(s) 1, 2, 3 Technical replicate 1_1, 2_1, 3_1 Antibody RAD21 Assay TF ChIP-seq File format bed narrowPeak File size 971,454 Downloaded date 07/10/2025 Release date 12/31/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF170JOE.bed.gz Processed file md5 32b03e375ceda57862de5cf2bebb16ec wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF170JOE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF170JOE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF170JOE/@@download/ENCFF170JOE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF170JOE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 917691409c694b67da6cd6eca257ef40 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE113448;Project=GGR;Award=U01HG007900;Experiment_date_released=2018- system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq RAD21 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR495WGO] [Life stage: Adult]
NGENC236IXDMGB Download track ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DTT] [Life stage: Unknown]
Show metadata Identifier NGENC236IXDMGB Data Source ENCODE Download track Download Number of intervals 26,633 bp covered 33,658,020 Output type pseudoreplicated peaks Genome build hg38 cell type Epithelial cell Biosample type Primary cell Biosamples term id CL:0000066 Tissue category Digestive ENCODE Experiment id ENCSR000DTT Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 662,247 Downloaded date 06/12/2022 Release date 09/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF193VUE.bed.gz Processed file md5 b62730b8f2d9473829a707f6862295e9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF193VUE.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF193VUE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF193VUE/@@download/ENCFF193VUE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF193VUE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 b9c848bef73d384ed6f5b33aace8c6cd Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens epithelial cell of esophagus;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=ccre_inputv2,ENCYCLOPEDIAv2,ccre_inputv1,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=SCREEN-GRCh38:epithelial_cell_of_esophagus,GEO:GSM94528 system category Digestive life stage Unknown trackName ENCODE Epithelial cell (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000DTT] [Life stage: Unknown]
NGENC2374WJRXQ Download track ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq E2F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVJ] [Life stage: Adult]
Show metadata Identifier NGENC2374WJRXQ Data Source ENCODE Download track Download Number of intervals 5,708 bp covered 1,959,508 Output type IDR thresholded peaks Genome build hg38 cell type HeLa-S3 Biosample type Cell line Biosamples term id EFO:0002791 Tissue category Female Reproductive ENCODE Experiment id ENCSR000EVJ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody E2F1 Assay TF ChIP-seq File format bed narrowPeak File size 107,976 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF170ZHA.bed.gz Processed file md5 24018b5f4fbcf75cc047693c3428ed21 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF170ZHA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF170ZHA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF170ZHA/@@download/ENCFF170ZHA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF170ZHA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 28cd1e0bdbecdd844cfe40facfb9fe5f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HeLa-S3;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EVJ,UCSC-ENCODE-hg19:wgEncodeEH0006 system category Reproductive life stage Adult trackName ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq E2F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVJ] [Life stage: Adult]
NGENC237X75ZUY Download track ENCODE HS-27A (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMF] [Life stage: Adult]
Show metadata Identifier NGENC237X75ZUY Data Source ENCODE Download track Download Number of intervals 62,306 bp covered 12,438,981 Output type peaks pValue=0.001 Genome build hg38 cell type HS-27A Biosample type Cell line Biosamples term id EFO:0005283 Tissue category Bone ENCODE Experiment id ENCSR000EMF Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 684,833 Downloaded date 06/12/2022 Release date 11/16/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF259EOL.bed.gz Processed file md5 8ec07d56564b9e1b8e3bab98b75772e3 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF259EOL.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF259EOL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF259EOL/@@download/ENCFF259EOL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF259EOL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 774d3a928afd526e1f7c7a135ad82cb4 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens HS-27A;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=GEO:GSM1024785,SCREEN-GRCh38:HS- system category Skeletal life stage Adult trackName ENCODE HS-27A (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR000EMF] [Life stage: Adult]
NGENC23BFN2XDV Download track ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR366QMB] [Life stage: Child]
Show metadata Identifier NGENC23BFN2XDV Data Source ENCODE Download track Download Number of intervals 40,172 bp covered 23,610,221 Output type pseudoreplicated peaks Genome build hg38 cell type SK-N-SH Biosample type Cell line Biosamples term id EFO:0003072 Tissue category Brain ENCODE Experiment id ENCSR366QMB Biological replicate(s) 2 Technical replicate 2_1 Antibody H2AFZ Assay Histone ChIP-seq File format bed narrowPeak File size 1,028,175 Downloaded date 05/15/2024 Release date 01/21/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz Processed file md5 c4f767e2bf8bfd7d8e39eb94aec24705 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF460XEO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF460XEO/@@download/ENCFF460XEO.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF460XEO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 9af72e511363fa175efb56990384c487 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H2AFZ pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=child 4 years;Reference=PMID:32728046;External_resources=GEO:GSE96137;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-10-19,2015-08-03;Submitted_track_ system category Nervous life stage Child trackName ENCODE SK-N-SH (repl. 2) Histone ChIP-seq H2AFZ pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR366QMB] [Life stage: Child]
NGENC23CBOOPBI Download track ENCODE GM12878 (repl. 1, 2) TF ChIP-seq CBX3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR549NPZ] [Life stage: Adult]
Show metadata Identifier NGENC23CBOOPBI Data Source ENCODE Download track Download Number of intervals 280 bp covered 140,000 Output type conservative IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR549NPZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody CBX3 Assay TF ChIP-seq File format bed narrowPeak File size 5,514 Downloaded date 06/12/2022 Release date 12/01/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF664UZE.bed.gz Processed file md5 bf95fc048551f2643d4cf4fbef48e40b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF664UZE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF664UZE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF664UZE/@@download/ENCFF664UZE.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF664UZE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0170a770d9793380034a69ba8ce73733 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE101211;Project=ENCODE;Award=U54HG006991;Experiment_da system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 1, 2) TF ChIP-seq CBX3 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR549NPZ] [Life stage: Adult]
NGENC23D7EI7GX Download track ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR225AOO] [Life stage: Adult]
Show metadata Identifier NGENC23D7EI7GX Data Source ENCODE Download track Download Number of intervals 82,239 bp covered 84,466,479 Output type replicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR225AOO Biological replicate(s) 1, 3 Technical replicate 1_1 ,3_1 Antibody H3K4me1 Assay Histone ChIP-seq File format bed narrowPeak File size 2,209,805 Downloaded date 07/10/2025 Release date 11/13/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz Processed file md5 0b43f8910b1d3a67f023470e8c720948 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF435CPJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF435CPJ/@@download/ENCFF435CPJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF435CPJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cc01bfcdd851c4b4a0fd3ea337abeafa Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me1 replicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 5 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91223;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=re system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 3) Histone ChIP-seq H3K4me1-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR225AOO] [Life stage: Adult]
NGENC23FBAUMID Download track ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR217OHA] [Life stage: Adult]
Show metadata Identifier NGENC23FBAUMID Data Source ENCODE Download track Download Number of intervals 179,760 bp covered 35,798,076 Output type peaks pValue=0.05 Genome build hg38 cell type Caudate nucleus Biosample type Tissue Biosamples term id UBERON:0001873 Tissue category Brain ENCODE Experiment id ENCSR217OHA Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,959,415 Downloaded date 06/12/2022 Release date 01/08/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF119OWP.bed.gz Processed file md5 6b94fd6c2af840bf9029d1e4be74e6fb wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF119OWP.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF119OWP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF119OWP/@@download/ENCFF119OWP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF119OWP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 3bbbac780975a0d559affe956ea991fe Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens head of caudate nucleus tissue female adult (90 or above years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE169826;Project=ENCODE;Award=UM1HG0094 system category Nervous life stage Adult trackName ENCODE Caudate nucleus (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR217OHA] [Life stage: Adult]
NGENC23FJHEY5G Download track ENCODE GM12878 (repl. 2) TF ChIP-seq ARNT IDR thresholded peaks (narrowPeak) [Experiment: ENCSR590KEQ] [Life stage: Adult]
Show metadata Identifier NGENC23FJHEY5G Data Source ENCODE Download track Download Number of intervals 18,530 bp covered 9,040,609 Output type IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR590KEQ Biological replicate(s) 2 Technical replicate 2_1 Antibody ARNT Assay TF ChIP-seq File format bed narrowPeak File size 351,588 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF524RCB.bed.gz Processed file md5 250477e780625eb347e4cbba47a871a9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF524RCB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF524RCB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF524RCB/@@download/ENCFF524RCB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF524RCB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 21027f31c2dd307334ac594d3b77b7ea Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMCID:PMC6724667;External_resources=GEO:GSE127382,FactorBook:ENCSR590KEQ;Project=ENCODE;Award=U54HG006996;Ex system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 2) TF ChIP-seq ARNT IDR thresholded peaks (narrowPeak) [Experiment: ENCSR590KEQ] [Life stage: Adult]
NGENC23H5WSY4N Download track ENCODE HCT116 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR521WNU] [Life stage: Adult]
Show metadata Identifier NGENC23H5WSY4N Data Source ENCODE Download track Download Number of intervals 63,938 bp covered 14,759,230 Output type peaks pValue=0.001 Genome build hg38 cell type HCT116 Biosample type Cell line Biosamples term id EFO:0002824 Tissue category Digestive ENCODE Experiment id ENCSR521WNU Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 737,865 Downloaded date 07/10/2025 Release date 11/04/2022 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF252SCW.bed.gz Processed file md5 041966d8a670bcc7a65eee7476f9388a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF252SCW.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF252SCW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF252SCW/@@download/ENCFF252SCW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF252SCW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 80778fa350f34cca79f933a3c6a11cfe Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,De system category Digestive life stage Adult trackName ENCODE HCT116 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR521WNU] [Life stage: Adult]
NGENC23J5FK47O Download track ENCODE Loucy (repl. 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165LOF] [Life stage: Adult]
Show metadata Identifier NGENC23J5FK47O Data Source ENCODE Download track Download Number of intervals 63,701 bp covered 116,551,949 Output type pseudoreplicated peaks Genome build hg38 cell type Loucy Biosample type Cell line Biosamples term id EFO:0007112 Tissue category Blood ENCODE Experiment id ENCSR165LOF Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K4me2 Assay Histone ChIP-seq File format bed narrowPeak File size 1,861,726 Downloaded date 06/12/2022 Release date 11/01/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF600IQL.bed.gz Processed file md5 62d7d4f9dfe5ecd57f3fba85d5783601 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF600IQL.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF600IQL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF600IQL/@@download/ENCFF600IQL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF600IQL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5aa8491a4ae6b8f159e95e3356c5d2b5 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens Loucy;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 38 years;Reference=PMID:32728046;External_resources=GEO:GSE95961;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-09-04,2014-11-20;Submitted_track_n system category Cardiovascular life stage Adult trackName ENCODE Loucy (repl. 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR165LOF] [Life stage: Adult]
NGENC23LPHHKOG Download track ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR548GGF] [Life stage: Adult]
Show metadata Identifier NGENC23LPHHKOG Data Source ENCODE Download track Download Number of intervals 27,794 bp covered 14,629,129 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR548GGF Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 670,710 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF635RDD.bed.gz Processed file md5 6ae67039f42ac73d765da350be963367 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF635RDD.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF635RDD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF635RDD/@@download/ENCFF635RDD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF635RDD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 483218349ffba7a8008aadc1c06b846a Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 10 nM Panobinostat for 4 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172652;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-16,2021-03-15;Submitted_t system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR548GGF] [Life stage: Adult]
NGENC23MER2WXH Download track ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR685YMG] [Life stage: Adult]
Show metadata Identifier NGENC23MER2WXH Data Source ENCODE Download track Download Number of intervals 72,629 bp covered 24,935,257 Output type pseudoreplicated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR685YMG Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 1,745,900 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF219RKH.bed.gz Processed file md5 7f863e458ba2f026efbc297930149c1e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF219RKH.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF219RKH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF219RKH/@@download/ENCFF219RKH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF219RKH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 93c65a7d6c6a4a4618c5dcd228345af2 Data Category Accessible chromatin Genomic feature type ATAC-seq pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens K562 treated with 2.5 μM Galeterone for 24 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172978;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=r system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) ATAC-seq pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR685YMG] [Life stage: Adult]
NGENC23N2WXW5A Download track ENCODE Thyroid gland (repl. 1) WGB-Seq methylation state at CHG (bed9+5 WGBS) [Experiment: ENCSR601MHU] [Life stage: Adult]
Show metadata Identifier NGENC23N2WXW5A Data Source ENCODE Download track Download Number of intervals 14,996,947 bp covered 14,996,947 Output type methylation state at CHG Genome build hg38 cell type Thyroid gland Biosample type Tissue Biosamples term id UBERON:0002046 Tissue category Endocrine ENCODE Experiment id ENCSR601MHU Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay WGB-Seq File format bed bed9+5 WGBS File size 216,727,630 Downloaded date 06/12/2022 Release date 03/09/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF466GNH.bed.gz Processed file md5 533e579f00f451f4c598f8f4d927fc17 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF466GNH.bed.gz -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ENCFF466GNH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/WGBS/bed14/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF466GNH/@@download/ENCFF466GNH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF466GNH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0d5db3fa230d48d22a20f2829267bb8f Data Category Methylation Genomic feature type WGB-Seq methylation state at CHG Track Description Biosample_summary=Homo sapiens thyroid gland tissue female adult (51 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENTEx,ENCYCLOPEDIAv2;Life_stage_age=adult 51 years;Reference=NR;External_resources=GEO:GSE127306;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2017-12-13;Submitted_tra system category Endocrine life stage Adult trackName ENCODE Thyroid gland (repl. 1) WGB-Seq methylation state at CHG (bed9+5 WGBS) [Experiment: ENCSR601MHU] [Life stage: Adult]
NGENC23NPPBJH5 Download track ENCODE K562 (repl. 1) TF ChIP-seq MCM5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR628APV] [Life stage: Adult]
Show metadata Identifier NGENC23NPPBJH5 Data Source ENCODE Download track Download Number of intervals 168 bp covered 55,440 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR628APV Biological replicate(s) 1 Technical replicate 1_1 Antibody MCM5 Assay TF ChIP-seq File format bed narrowPeak File size 3,609 Downloaded date 06/12/2022 Release date 12/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF195GHL.bed.gz Processed file md5 5f540b901bec3ba8e02bf3432c91229d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF195GHL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF195GHL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF195GHL/@@download/ENCFF195GHL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF195GHL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 57c8f41d4199b71af93a95fd222e7e71 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE127403;Project=ENCODE;Award=U54HG006996;Experiment_date_ system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq MCM5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR628APV] [Life stage: Adult]
NGENC23O76B2RQ Download track ENCODE Pancreas (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR464TKV] [Life stage: Adult]
Show metadata Identifier NGENC23O76B2RQ Data Source ENCODE Download track Download Number of intervals 151,143 bp covered 29,587,165 Output type peaks pValue=0.05 Genome build hg38 cell type Pancreas Biosample type Tissue Biosamples term id UBERON:0001264 Tissue category Digestive ENCODE Experiment id ENCSR464TKV Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,725,099 Downloaded date 06/12/2022 Release date 10/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF367JHF.bed.gz Processed file md5 1f714b0a29aa7483f17a56ccba1764b4 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF367JHF.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF367JHF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF367JHF/@@download/ENCFF367JHF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF367JHF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 cb06195fbd7bd206485e16502ed4b058 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens body of pancreas tissue male adult (54 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE170143;Project=ENCODE;Award=UM1HG009444;Experiment_date_released= system category Digestive life stage Adult trackName ENCODE Pancreas (repl. 1) DNase-seq peaks pValue=0.05 (narrowPeak) [Experiment: ENCSR464TKV] [Life stage: Adult]
NGENC23ODIATXS Download track ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq SRF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTD] [Life stage: Adult]
Show metadata Identifier NGENC23ODIATXS Data Source ENCODE Download track Download Number of intervals 13,185 bp covered 3,777,193 Output type IDR thresholded peaks Genome build hg38 cell type Ishikawa Biosample type Cell line Biosamples term id EFO:0005718 Tissue category Female Reproductive ENCODE Experiment id ENCSR000BTD Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody SRF Assay TF ChIP-seq File format bed narrowPeak File size 244,023 Downloaded date 06/12/2022 Release date 12/26/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992QXM.bed.gz Processed file md5 cc2cc00edc5f93f819f015c267b8b98c wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992QXM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF992QXM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF992QXM/@@download/ENCFF992QXM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF992QXM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6b789ffb6ef055017b9a481ce2eedab6 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens Ishikawa;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM1010762,UCSC-ENCODE-hg19:wgEncodeEH003245,FactorBook:ENCSR000BTD;Project=EN system category Reproductive life stage Adult trackName ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq SRF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTD] [Life stage: Adult]
NGENC23OGCSKWL Download track ENCODE Middle frontal area BA46 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR796YOJ] [Life stage: Adult]
Show metadata Identifier NGENC23OGCSKWL Data Source ENCODE Download track Download Number of intervals 61,515 bp covered 12,329,876 Output type peaks pValue=0.001 Genome build hg38 cell type Middle frontal area BA46 Biosample type Tissue Biosamples term id UBERON:0006483 Tissue category Brain ENCODE Experiment id ENCSR796YOJ Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 670,311 Downloaded date 06/12/2022 Release date 01/07/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF439PAQ.bed.gz Processed file md5 6d9392d685aec4d33b7d2f7a50b27a8b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF439PAQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF439PAQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF439PAQ/@@download/ENCFF439PAQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF439PAQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e6d2cc6cfb7d64e5ed1cb8892b66cb86 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens with Alzheimer's disease| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE1701 system category Nervous life stage Adult trackName ENCODE Middle frontal area BA46 (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR796YOJ] [Life stage: Adult]
NGENC23OGPZHTW Download track ENCODE BLaER1 (repl. 1) TF ChIP-seq Cebpa IDR thresholded peaks (narrowPeak) [Experiment: ENCSR236DYB] [Life stage: Unknown]
Show metadata Identifier NGENC23OGPZHTW Data Source ENCODE Download track Download Number of intervals 11,452 bp covered 4,897,212 Output type IDR thresholded peaks Genome build hg38 cell type BLaER1 Biosample type Cell line Biosamples term id EFO:0030018 Tissue category Blood ENCODE Experiment id ENCSR236DYB Biological replicate(s) 1 Technical replicate 1_1 Antibody Cebpa Assay TF ChIP-seq File format bed narrowPeak File size 221,730 Downloaded date 05/15/2024 Release date 02/12/2023 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF501ARU.bed.gz Processed file md5 47c243de26476b6b2535bab00bc10349 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF501ARU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF501ARU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF501ARU/@@download/ENCFF501ARU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF501ARU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2888d8cb49325639f7229d776687095b Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens BLaER1 72 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257101;Project=community;Awa system category Cardiovascular life stage Unknown trackName ENCODE BLaER1 (repl. 1) TF ChIP-seq Cebpa IDR thresholded peaks (narrowPeak) [Experiment: ENCSR236DYB] [Life stage: Unknown]
NGENC23OPQHXES Download track ENCODE GM12878 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKE] [Life stage: Adult]
Show metadata Identifier NGENC23OPQHXES Data Source ENCODE Download track Download Number of intervals 29,343 bp covered 12,166,277 Output type pseudoreplicated peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR000AKE Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 537,361 Downloaded date 06/12/2022 Release date 10/29/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz Processed file md5 85ebd2151ab07ec00e356fc46425606a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF732HMB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF732HMB/@@download/ENCFF732HMB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF732HMB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 5f14dfbd72495e8507c180ed7034bc15 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000032,GEO:GSM733679;Project=ENCODE;Award=U54HG004570;Experiment_date_released system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 1) Histone ChIP-seq H3K36me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000AKE] [Life stage: Adult]
NGENC23S4BMD7A Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq NFYA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EGR] [Life stage: Adult]
Show metadata Identifier NGENC23S4BMD7A Data Source ENCODE Download track Download Number of intervals 3,473 bp covered 962,904 Output type conservative IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000EGR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody NFYA Assay TF ChIP-seq File format bed narrowPeak File size 64,383 Downloaded date 06/12/2022 Release date 12/10/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF790ZUY.bed.gz Processed file md5 1411af12b1a25e5977b850f7b769c9ee wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF790ZUY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF790ZUY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF790ZUY/@@download/ENCFF790ZUY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF790ZUY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 941574147203c08d5e919cf88b9307c0 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002021,GEO:GSM935433,Fac system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq NFYA conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EGR] [Life stage: Adult]
NGENC23SPMMZUO Download track ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AQK] [Life stage: Embryonic]
Show metadata Identifier NGENC23SPMMZUO Data Source ENCODE Download track Download Number of intervals 3,842 bp covered 3,441,667 Output type conservative IDR thresholded peaks Genome build hg38 cell type H1-hESC Biosample type Stem cell Biosamples term id EFO:0003042 Tissue category Embryo ENCODE Experiment id ENCSR000AQK Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1 Antibody CHD1 Assay TF ChIP-seq File format bed narrowPeak File size 69,445 Downloaded date 06/12/2022 Release date 02/11/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz Processed file md5 f7dbabadfbb10f3792144ccff9898a3f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF925ZDS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF925ZDS/@@download/ENCFF925ZDS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF925ZDS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1806299f0640b051cac66fdd92a46f08 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1003444,UCSC-ENCODE-hg19:wgEncodeEH002095;Project=ENCODE;A system category Embryo life stage Embryonic trackName ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq CHD1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000AQK] [Life stage: Embryonic]
NGENC23TZTTGNT Download track ENCODE Spleen (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR601FEB] [Life stage: Adult]
Show metadata Identifier NGENC23TZTTGNT Data Source ENCODE Download track Download Number of intervals 37,021 bp covered 15,888,555 Output type IDR thresholded peaks Genome build hg38 cell type Spleen Biosample type Tissue Biosamples term id UBERON:0002106 Tissue category Immune Organ ENCODE Experiment id ENCSR601FEB Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 2_1, 2_2 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 655,795 Downloaded date 06/12/2022 Release date 09/24/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz Processed file md5 3e6b10d1fb292b8d1da1d6e406a7ef6e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF146BOL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF146BOL/@@download/ENCFF146BOL.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF146BOL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 daaed494e928fffec7b38210fc316a0f Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=FactorBook:ENCSR601FEB,GEO:GSE143022;Project=ENCODE;Award=UM1HG009390;Experiment_da system category Lymphatic life stage Adult trackName ENCODE Spleen (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR601FEB] [Life stage: Adult]
NGENC23UOUKFMG Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq LCOR IDR thresholded peaks (narrowPeak) [Experiment: ENCSR672OHP] [Life stage: Adult]
Show metadata Identifier NGENC23UOUKFMG Data Source ENCODE Download track Download Number of intervals 18,354 bp covered 9,967,360 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR672OHP Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody LCOR Assay TF ChIP-seq File format bed narrowPeak File size 361,653 Downloaded date 05/15/2024 Release date 08/19/2022 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340MHH.bed.gz Processed file md5 153882f0a879c5bd8c935acfd04b15b5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340MHH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340MHH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF340MHH/@@download/ENCFF340MHH.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF340MHH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 f4030c67a7adb09dd92672d98b356883 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231099;Project=ENCODE;Award=UM1HG009411;Experiment_date_release system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq LCOR IDR thresholded peaks (narrowPeak) [Experiment: ENCSR672OHP] [Life stage: Adult]
NGENC23X6IRUW5 Download track ENCODE K562 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR199HSR] [Life stage: Adult]
Show metadata Identifier NGENC23X6IRUW5 Data Source ENCODE Download track Download Number of intervals 108,797 bp covered 47,349,662 Output type replicated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR199HSR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,943,292 Downloaded date 07/10/2025 Release date 08/25/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF023YSR.bed.gz Processed file md5 88b5ce16f21ab713106898baf95a0dfa wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF023YSR.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF023YSR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF023YSR/@@download/ENCFF023YSR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF023YSR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 2ca70f1ca1485f2a17181f217a44455c Data Category Accessible chromatin Genomic feature type ATAC-seq replicated peaks Track Description Biosample_summary=Homo sapiens K562 treated with DMSO for 48 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE172960;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=rep1_vs_rep2.o system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR199HSR] [Life stage: Adult]
NGENC23Y6KV3AZ Download track ENCODE A549 (repl. 1, 3) TF ChIP-seq FOSL2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535HFQ] [Life stage: Adult]
Show metadata Identifier NGENC23Y6KV3AZ Data Source ENCODE Download track Download Number of intervals 9,935 bp covered 3,887,362 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR535HFQ Biological replicate(s) 1, 3 Technical replicate 1_1 ,3_1 Antibody FOSL2 Assay TF ChIP-seq File format bed narrowPeak File size 178,214 Downloaded date 09/10/2024 Release date 01/02/2021 Date added to FILER 10/07/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF313SDM.bed.gz Processed file md5 55481ff01a2e9ae72106b64829fbe538 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF313SDM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF313SDM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF313SDM/@@download/ENCFF313SDM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF313SDM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e272418a5b5705d4d1f8e391ee82445c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 6 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91279,FactorBook:ENCSR535HFQ;Project=GGR;Award=U01HG007900;Experimen system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 3) TF ChIP-seq FOSL2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR535HFQ] [Life stage: Adult]
NGENC23YSKUDQ4 Download track ENCODE HFFc6 (repl. 2) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR672EWY] [Life stage: Newborn]
Show metadata Identifier NGENC23YSKUDQ4 Data Source ENCODE Download track Download Number of intervals 444,963 bp covered 5,059,802 Output type footprints Genome build hg38 cell type HFFc6 Biosample type Cell line Biosamples term id EFO:0009318 Tissue category Male Reproductive ENCODE Experiment id ENCSR672EWY Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 3,017,448 Downloaded date 06/12/2022 Release date 09/24/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF626YCW.bed.gz Processed file md5 f8af564ec3196d7318759c5082057154 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF626YCW.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF626YCW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF626YCW/@@download/ENCFF626YCW.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF626YCW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8624254db5215c1d7018f9657e027d31 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens HFFc6;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_2,RegulomeDB_2_0,RegulomeDB_2_1;Life_stage_age=newborn 0 years;Reference=NR;External_resources=GEO:GSE170964;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2018-10-19;Subm system category Reproductive life stage Newborn trackName ENCODE HFFc6 (repl. 2) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR672EWY] [Life stage: Newborn]
NGENC23YZXC4FA Download track ENCODE Keratinocyte (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR572UDP] [Life stage: Newborn]
Show metadata Identifier NGENC23YZXC4FA Data Source ENCODE Download track Download Number of intervals 183,746 bp covered 153,484,213 Output type IDR thresholded peaks Genome build hg38 cell type Keratinocyte Biosample type Primary cell Biosamples term id CL:0000312 Tissue category Skin ENCODE Experiment id ENCSR572UDP Biological replicate(s) 1, 2 Technical replicate 1_1, 1_2, 1_3, 2_1, 2_2, 2_3, 2_4, 2_5, 2_6 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 4,179,722 Downloaded date 07/10/2025 Release date 03/16/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF022HJD.bed.gz Processed file md5 fd8aa7951bcf945aebd7a19aeb360cd5 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF022HJD.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF022HJD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF022HJD/@@download/ENCFF022HJD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF022HJD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 eaec7ff3cdec555000f556ef9957434d Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 1.5 days;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=GEO:GSE172693;Project=GGR;Award=U01HG007919;Experiment_date_relea system category Integumentary life stage Newborn trackName ENCODE Keratinocyte (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR572UDP] [Life stage: Newborn]
NGENC23ZHXQRS7 Download track ENCODE CD8+ T cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR162JNV] [Life stage: Adult]
Show metadata Identifier NGENC23ZHXQRS7 Data Source ENCODE Download track Download Number of intervals 34,547 bp covered 6,459,087 Output type peaks pValue=0.001 Genome build hg38 cell type CD8+ T cell Biosample type Primary cell Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id ENCSR162JNV Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 398,861 Downloaded date 05/15/2024 Release date 10/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF228EWS.bed.gz Processed file md5 5a32f472c122e39104b1b7693e30fb29 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF228EWS.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF228EWS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF228EWS/@@download/ENCFF228EWS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF228EWS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 035e9bdfc3bcd8ad8f518b61a854e7e2 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 38 years;Reference=NR;External_resources=GEO:GSE170529;Project=ENCODE;Award=UM1HG009444;Experiment_date_released=2020-10-05;Su system category Cardiovascular life stage Adult trackName ENCODE CD8+ T cell (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR162JNV] [Life stage: Adult]
NGENC23ZUVVBLH Download track ENCODE PC-9 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR555TAX] [Life stage: Unknown]
Show metadata Identifier NGENC23ZUVVBLH Data Source ENCODE Download track Download Number of intervals 32,061 bp covered 21,638,493 Output type replicated peaks Genome build hg38 cell type PC-9 Biosample type Cell line Biosamples term id EFO:0002847 Tissue category Lung ENCODE Experiment id ENCSR555TAX Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 805,676 Downloaded date 05/15/2024 Release date 01/21/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF413OVB.bed.gz Processed file md5 fa648ba7e0103711526cc218af14a0d0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF413OVB.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF413OVB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF413OVB/@@download/ENCFF413OVB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF413OVB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 240ac7ce4243c92c7a229b9ad2f61a6b Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 replicated peaks Track Description Biosample_summary=Homo sapiens PC-9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96232;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2016-05-06;Submitted_track_name=rep1_vs_rep2.overlap system category Respiratory life stage Unknown trackName ENCODE PC-9 (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR555TAX] [Life stage: Unknown]
NGENC242L32LXQ Download track ENCODE Superior temporal gyrus (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR382JUJ] [Life stage: Adult]
Show metadata Identifier NGENC242L32LXQ Data Source ENCODE Download track Download Number of intervals 146,956 bp covered 36,814,753 Output type peaks pValue=0.001 Genome build hg38 cell type Superior temporal gyrus Biosample type Tissue Biosamples term id UBERON:0002769 Tissue category Brain ENCODE Experiment id ENCSR382JUJ Biological replicate(s) 1 Technical replicate 1_1 Antibody Not applicable Assay DNase-seq File format bed narrowPeak File size 1,698,584 Downloaded date 06/12/2022 Release date 11/06/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF828UCX.bed.gz Processed file md5 732936a7d81e283ab689c304e769703d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF828UCX.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ENCFF828UCX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF828UCX/@@download/ENCFF828UCX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF828UCX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d9c439ebec4f980c030552af6a45a414 Data Category Accessible chromatin Genomic feature type DNase-seq peaks Track Description Biosample_summary=Homo sapiens superior temporal gyrus tissue male adult (84 years);Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 84 years;Reference=NR;External_resource system category Nervous life stage Adult trackName ENCODE Superior temporal gyrus (repl. 1) DNase-seq peaks pValue=0.001 (narrowPeak) [Experiment: ENCSR382JUJ] [Life stage: Adult]
NGENC243FB27SC Download track ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq MAX IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BSJ] [Life stage: Embryonic]
Show metadata Identifier NGENC243FB27SC Data Source ENCODE Download track Download Number of intervals 41,958 bp covered 12,918,369 Output type IDR thresholded peaks Genome build hg38 cell type H1-hESC Biosample type Stem cell Biosamples term id EFO:0003042 Tissue category Embryo ENCODE Experiment id ENCSR000BSJ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody MAX Assay TF ChIP-seq File format bed narrowPeak File size 747,932 Downloaded date 06/12/2022 Release date 01/02/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF914VQY.bed.gz Processed file md5 a973d254fb6d6a20eb5ca82c02f0c15f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF914VQY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF914VQY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF914VQY/@@download/ENCFF914VQY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF914VQY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 839f97136fc694241afc1b34b5f92f7c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=NR;Reference=PMID:32737473;External_resources=FactorBook:ENCSR000BSJ,UCSC-ENCODE-hg19:wgEncodeEH003225,GEO:GSM1010898;Project=ENCODE;Award=U54HG00 system category Embryo life stage Embryonic trackName ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq MAX IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BSJ] [Life stage: Embryonic]
NGENC2445W2TAS Download track ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR962FFY] [Life stage: Adult]
Show metadata Identifier NGENC2445W2TAS Data Source ENCODE Download track Download Number of intervals 722,210 bp covered 536,298,641 Output type chromatin interactions Genome build hg38 cell type CD4+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000624 Tissue category Blood ENCODE Experiment id ENCSR962FFY Biological replicate(s) 2 Technical replicate 2_1 Antibody CTCF Assay ChIA-PET File format bed bed4+19 interact File size 28,754,286 Downloaded date 09/20/2025 Release date 07/16/2021 Date added to FILER 10/30/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz Processed file md5 61aa53915a331b739fe4642bde99b375 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF309GVQ.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ Link out URL https://www.encodeproject.org/ Raw File URL https://www.encodeproject.org/files/ENCFF309GVQ/@@download/ENCFF309GVQ.bedpe.gz Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF309GVQ.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ Raw file md5 09a45d79bb10fa14c90c6cf8c201d58b Data Category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions Track Description Biosample_summary=Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=adult 20 years;Reference=NR;External_resources=GEO: system category Cardiovascular life stage Adult trackName ENCODE CD4+ alpha-beta T cell (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR962FFY] [Life stage: Adult]
NGENC244MZBMSN Download track ENCODE K562 (repl. 1, 2) TF ChIP-seq AGO1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR641BSL] [Life stage: Adult]
Show metadata Identifier NGENC244MZBMSN Data Source ENCODE Download track Download Number of intervals 11,400 bp covered 8,672,299 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR641BSL Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody AGO1 Assay TF ChIP-seq File format bed narrowPeak File size 205,065 Downloaded date 06/12/2022 Release date 12/03/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF025NLP.bed.gz Processed file md5 0393ef428deab9f2fe37c496ed6e86be wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF025NLP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF025NLP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF025NLP/@@download/ENCFF025NLP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF025NLP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6a330c1980e0ffb913ac0325370ac10c Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Xiang-Dong Fu, UCSD;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32728246;External_resources=GEO:GSE105560;Project=ENCODE;Award=U54HG007005;Ex system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) TF ChIP-seq AGO1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR641BSL] [Life stage: Adult]
NGENC2454H5UPK Download track ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR368UYD] [Life stage: Adult]
Show metadata Identifier NGENC2454H5UPK Data Source ENCODE Download track Download Number of intervals 274,592 bp covered 101,730,216 Output type pseudoreplicated peaks Genome build hg38 cell type Naive thymus-derived CD8+ alpha-beta T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id ENCSR368UYD Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27me3 Assay Mint-ChIP-seq File format bed narrowPeak File size 6,951,141 Downloaded date 06/12/2022 Release date 06/18/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz Processed file md5 2f8c5f2be1dff979a3bc5c4f12f3432f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF501ZOP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF501ZOP/@@download/ENCFF501ZOP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF501ZOP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 16a041726e0f745b4cb66fcd9c3cdee4 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (42 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 42 years;Reference=NR;External_resources=GEO:GSE187309;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-06 system category Cardiovascular life stage Adult trackName ENCODE Naive thymus-derived CD8+ alpha-beta T cell (repl. 1) Mint-ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR368UYD] [Life stage: Adult]
NGENC245PMMTOA Download track ENCODE Myoblast (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANK] [Life stage: Adult]
Show metadata Identifier NGENC245PMMTOA Data Source ENCODE Download track Download Number of intervals 31,214 bp covered 33,695,074 Output type pseudoreplicated peaks Genome build hg38 cell type Myoblast Biosample type Primary cell Biosamples term id CL:0000056 Tissue category Skeletal Muscle ENCODE Experiment id ENCSR000ANK Biological replicate(s) 1 Technical replicate 1_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 864,875 Downloaded date 06/12/2022 Release date 09/30/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF396BGA.bed.gz Processed file md5 3b2ef5f41b37e0b5cf6e38c03de8a8d7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF396BGA.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF396BGA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF396BGA/@@download/ENCFF396BGA.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF396BGA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 8924658ecc9f23336d8f7a5970985e65 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=adult 22 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000116,GEO:GSM system category Muscular life stage Adult trackName ENCODE Myoblast (repl. 1) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR000ANK] [Life stage: Adult]
NGENC24BVBQJED Download track ENCODE Loucy (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR884QDT] [Life stage: Adult]
Show metadata Identifier NGENC24BVBQJED Data Source ENCODE Download track Download Number of intervals 18,116 bp covered 11,972,157 Output type replicated peaks Genome build hg38 cell type Loucy Biosample type Cell line Biosamples term id EFO:0007112 Tissue category Blood ENCODE Experiment id ENCSR884QDT Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K9me3 Assay Histone ChIP-seq File format bed narrowPeak File size 412,915 Downloaded date 06/12/2022 Release date 11/12/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807OYM.bed.gz Processed file md5 be5bbf2a4ac68013f4bac90993f73848 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807OYM.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF807OYM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF807OYM/@@download/ENCFF807OYM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF807OYM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 49479eba3bdc097c4ca6ded6ab6463ac Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K9me3 replicated peaks Track Description Biosample_summary=Homo sapiens Loucy;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,ENCYCLOPEDIAv2;Life_stage_age=adult 38 years;Reference=PMID:32728046;External_resources=GEO:GSE96448;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-09-04,2014-11-20;Submitted_track_n system category Cardiovascular life stage Adult trackName ENCODE Loucy (repl. 1, 2) Histone ChIP-seq H3K9me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR884QDT] [Life stage: Adult]
NGENC24DF3V6II Download track ENCODE GM23338 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR932ZMX] [Life stage: Adult]
Show metadata Identifier NGENC24DF3V6II Data Source ENCODE Download track Download Number of intervals 71,382 bp covered 12,606,168 Output type IDR thresholded peaks Genome build hg38 cell type GM23338 Biosample type Cell line Biosamples term id EFO:0007950 Tissue category iPSC ENCODE Experiment id ENCSR932ZMX Biological replicate(s) 1 Technical replicate 1_1 Antibody CTCF Assay TF ChIP-seq File format bed narrowPeak File size 1,238,746 Downloaded date 06/12/2022 Release date 10/19/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz Processed file md5 b30444e31120833cb9b49488425359e1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF568TJZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF568TJZ/@@download/ENCFF568TJZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF568TJZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 39e2fd6afd217ce07f44c23bcdceba27 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM23338 originated from GM23248;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=adult 53 years;Reference=NR;External_resources=FactorBook:ENCSR932ZM system category Stem Cell life stage Adult trackName ENCODE GM23338 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR932ZMX] [Life stage: Adult]