NGDSHYPKJFFCGL Download track DASHR2 GM12878 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHYPKJFFCGL Data Source DASHR2 Download track Download Number of intervals 2,124 bp covered 54,847 Output type annotated peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 205,581 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446392_peaks_annot_hg38.bed.gz Processed file md5 491a26af0bec1baf303044464815e3b4 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446392_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446392_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/GM12878_SRR446392_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 daa2dbeeaf79c58eb8814a13c816604d Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=GM12878 cell line - B-lymphocyte, lymphoblastoid, International HapMap Project;DASHR_source_id= SRR446392;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontolo system category Cardiovascular life stage Unknown trackName DASHR2 GM12878 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHYTGLGEOAL Download track DASHR2 MCF-7 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHYTGLGEOAL Data Source DASHR2 Download track Download Number of intervals 1,842 bp covered 46,590 Output type annotated peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 184,439 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446324_peaks_annot_hg38.bed.gz Processed file md5 32fc7b32e30236cbd8477d7638e25784 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446324_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446324_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/MCF-7_SRR446324_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 372150119770ac140366165f569a3013 Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=MCF-7 cell line;DASHR_source_id= SRR446324;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Reproductive life stage Unknown trackName DASHR2 MCF-7 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHYULD5QHKL Download track DASHR2 Neuronal progenitor cell short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHYULD5QHKL Data Source DASHR2 Download track Download Number of intervals 51,820 bp covered 1,390,164 Output type unannotated peaks Genome build hg38 cell type Neuronal progenitor cell Biosample type Stem cell Biosamples term id CL:0000047 Tissue category Nervous ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 3,433,451 Downloaded date 06/30/2018 Release date 01/08/2015 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep1_ENCSR828LSC_peaks_unannot_hg38.bed.gz Processed file md5 ef15086305f01c20386c03b77ee85216 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep1_ENCSR828LSC_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep1_ENCSR828LSC_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/neural-progenitor-cell-rep1_ENCSR828LSC_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 ce18043394920ea4444d4df5311957ca Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=Neural progenitor cell replicate 1;DASHR_source_id= ENCSR828LSC;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Nervous life stage Unknown trackName DASHR2 Neuronal progenitor cell short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZ3L2LZ5DI Download track DASHR2 HepG2 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZ3L2LZ5DI Data Source DASHR2 Download track Download Number of intervals 4,857 bp covered 79,947 Output type unannotated peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 348,333 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/HepG2_SRR446334_peaks_unannot_hg38.bed.gz Processed file md5 22c756ecdda8aede17cc9123a84032d8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/HepG2_SRR446334_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/HepG2_SRR446334_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/HepG2_SRR446334_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 8b1fe80f3bc088b0f5501a2da317dd64 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=HepG2 cell line - Hepatocellular carcinoma;DASHR_source_id= SRR446334;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Digestive life stage Unknown trackName DASHR2 HepG2 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZ4L7ATUT7 Download track DASHR2 Neuronal progenitor cell short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZ4L7ATUT7 Data Source DASHR2 Download track Download Number of intervals 63,712 bp covered 1,838,447 Output type unannotated peaks Genome build hg38 cell type Neuronal progenitor cell Biosample type Stem cell Biosamples term id CL:0000047 Tissue category Nervous ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 4,262,282 Downloaded date 06/30/2018 Release date 01/08/2015 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep2_ENCSR828LSC_peaks_unannot_hg38.bed.gz Processed file md5 a94fe8f6a544131bde70fc65f47f7219 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep2_ENCSR828LSC_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/neural-progenitor-cell-rep2_ENCSR828LSC_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/neural-progenitor-cell-rep2_ENCSR828LSC_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 75cd9eaa68ecb2d8de850992c5e73543 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=Neural progenitor cell replicate 2;DASHR_source_id= ENCSR828LSC;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Nervous life stage Unknown trackName DASHR2 Neuronal progenitor cell short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZ5LEQTD7S Download track DASHR2 GM12878 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZ5LEQTD7S Data Source DASHR2 Download track Download Number of intervals 9,360 bp covered 154,496 Output type unannotated peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 675,939 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446393_peaks_unannot_hg38.bed.gz Processed file md5 4eacdef156e9c0289da5b43394672770 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446393_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/GM12878_SRR446393_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/GM12878_SRR446393_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 2f8a1f3d7be8ade68809651084117824 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=GM12878 cell line - B-lymphocyte, lymphoblastoid, International HapMap Project;DASHR_source_id= SRR446393;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontolo system category Cardiovascular life stage Unknown trackName DASHR2 GM12878 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZ7QJBB5ZA Download track DASHR2 Adipose Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZ7QJBB5ZA Data Source DASHR2 Download track Download Number of intervals 10,502 bp covered 175,644 Output type unannotated peaks Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay Small RNA-Seq File format bed bed6+52 DASHR File size 728,204 Downloaded date 06/30/2018 Release date 04/01/2013 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/adipose1_GSE45159_peaks_unannot_hg38.bed.gz Processed file md5 35b1a2067f74f5ea451dfcfe7c93c76a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/adipose1_GSE45159_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/adipose1_GSE45159_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=DASHR1_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/adipose1_GSE45159_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/ Raw file md5 9000fda76c3404a0bb65ce94c6d61573 Data Category Small RNA Genomic feature type Small RNA-Seq unannotated peaks Track Description Original_cell_type=Adipose;DASHR_source_id= GSE45159;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Integumentary life stage Unknown trackName DASHR2 Adipose Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZAC6R7PEJ Download track DASHR2 Preadipocyte short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZAC6R7PEJ Data Source DASHR2 Download track Download Number of intervals 2,515 bp covered 102,298 Output type annotated peaks Genome build hg38 cell type Preadipocyte Biosample type Primary cell Biosamples term id CL:0002334 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 267,649 Downloaded date 06/30/2018 Release date 07/09/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/subcutaneous-preadipocyte-rep1_ENCSR000CVJ_peaks_annot_hg38.bed.gz Processed file md5 526879a4ec042e7e7f1d02e4e2bffcd9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/subcutaneous-preadipocyte-rep1_ENCSR000CVJ_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/subcutaneous-preadipocyte-rep1_ENCSR000CVJ_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/subcutaneous-preadipocyte-rep1_ENCSR000CVJ_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 1a89ba735c9ca599d6b63e738e959324 Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=Subcutaneous preadipocyte replicate 1;DASHR_source_id= ENCSR000CVJ;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Integumentary life stage Unknown trackName DASHR2 Preadipocyte short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZAGSBSGPZ Download track DASHR2 A549 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZAGSBSGPZ Data Source DASHR2 Download track Download Number of intervals 2,378 bp covered 82,731 Output type annotated peaks Genome build hg38 cell type A549 Biosample type Immortalized cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 235,989 Downloaded date 06/30/2018 Release date 07/09/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/A549-rep4_ENCSR000CSL_peaks_annot_hg38.bed.gz Processed file md5 3db49e538ef40954e2e23b8b001298c6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/A549-rep4_ENCSR000CSL_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/A549-rep4_ENCSR000CSL_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/A549-rep4_ENCSR000CSL_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 9328094992549bcc5cb4a0a1249d6637 Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=A549 cell line replicate 4;DASHR_source_id= ENCSR000CSL;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Respiratory life stage Unknown trackName DASHR2 A549 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZAS26EBYA Download track DASHR2 Mesenchymal stem cell short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Adult]
Show metadata Identifier NGDSHZAS26EBYA Data Source DASHR2 Download track Download Number of intervals 3,210 bp covered 118,715 Output type annotated peaks Genome build hg38 cell type Mesenchymal stem cell Biosample type Stem cell Biosamples term id CL:0000134 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 339,611 Downloaded date 06/30/2018 Release date 07/26/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-BM_SRR527650_peaks_annot_hg38.bed.gz Processed file md5 0b164d45e7d61715a80ad730186114a2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-BM_SRR527650_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-BM_SRR527650_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/hMSC-BM_SRR527650_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 b4734fe32f51a64dd30193ff3967a03a Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=Female adult (60 years) mesenchymal of the bone marrow stem cell;DASHR_source_id= SRR527650;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not availab system category Skeletal life stage Adult trackName DASHR2 Mesenchymal stem cell short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Adult]
NGDSHZDJVECZXP Download track DASHR2 Epithelium short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZDJVECZXP Data Source DASHR2 Download track Download Number of intervals 2,930 bp covered 71,215 Output type unannotated peaks Genome build hg38 cell type Epithelium Biosample type Tissue Biosamples term id NCIT:C12710 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 217,536 Downloaded date 06/30/2018 Release date 06/13/2016 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/esophagus-squamous-epithelium-rep1_ENCSR779BVZ_peaks_unannot_hg38.bed.gz Processed file md5 1fbf0ba2a698b428823098dfd250398f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/esophagus-squamous-epithelium-rep1_ENCSR779BVZ_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/esophagus-squamous-epithelium-rep1_ENCSR779BVZ_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/esophagus-squamous-epithelium-rep1_ENCSR779BVZ_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 14189a36cfeb37a5775a4bbd3bedc116 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=Esophagus squamous epithelium replicate 1;DASHR_source_id= ENCSR779BVZ;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Digestive life stage Unknown trackName DASHR2 Epithelium short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZEBO3WUJC Download track DASHR2 Mesenchymal stem cell short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Adult]
Show metadata Identifier NGDSHZEBO3WUJC Data Source DASHR2 Download track Download Number of intervals 2,716 bp covered 107,028 Output type annotated peaks Genome build hg38 cell type Mesenchymal stem cell Biosample type Stem cell Biosamples term id CL:0000134 Tissue category Connective Tissue ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 283,148 Downloaded date 06/30/2018 Release date 07/26/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-AT_SRR527675_peaks_annot_hg38.bed.gz Processed file md5 aad4b010b676edca36493210307aa3a9 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-AT_SRR527675_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/hMSC-AT_SRR527675_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/hMSC-AT_SRR527675_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 f34cee12f04627cc7914688d3092bc6a Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=Female adult (42 years) mesenchymal of adipose stem cell;DASHR_source_id= SRR527675;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg system category Skeletal life stage Adult trackName DASHR2 Mesenchymal stem cell short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Adult]
NGDSHZFZDNFUXN Download track DASHR2 MCF-7 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZFZDNFUXN Data Source DASHR2 Download track Download Number of intervals 12,857 bp covered 260,288 Output type unannotated peaks Genome build hg38 cell type MCF-7 Biosample type Cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 925,394 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446326_peaks_unannot_hg38.bed.gz Processed file md5 925beb49879aa207fea9f2cfd7872d0f wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446326_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/MCF-7_SRR446326_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/MCF-7_SRR446326_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 f05febd88e527793219ed3188a5cdc5f Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=MCF-7 cell line;DASHR_source_id= SRR446326;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Reproductive life stage Unknown trackName DASHR2 MCF-7 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZHCE4IA3I Download track DASHR2 Fibroblast short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Adult]
Show metadata Identifier NGDSHZHCE4IA3I Data Source DASHR2 Download track Download Number of intervals 14,409 bp covered 290,943 Output type unannotated peaks Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 1,045,997 Downloaded date 06/30/2018 Release date 07/26/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/NHDF_SRR527661_peaks_unannot_hg38.bed.gz Processed file md5 ed26b51b4e3d51bf1fea823d517aacc2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/NHDF_SRR527661_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/NHDF_SRR527661_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/NHDF_SRR527661_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 1c0186d9abfa0986c32c856323151248 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=Female adult (55 years) fibroblast of dermis primary cell;DASHR_source_id= SRR527661;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_h system category Integumentary life stage Adult trackName DASHR2 Fibroblast short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Adult]
NGDSHZHST5SR3O Download track DASHR2 Prostate Small RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZHST5SR3O Data Source DASHR2 Download track Download Number of intervals 5,150 bp covered 155,124 Output type annotated peaks Genome build hg38 cell type Prostate Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay Small RNA-Seq File format bed bed6+52 DASHR File size 534,725 Downloaded date 06/30/2018 Release date 11/30/2016 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate1_GSE89193_peaks_annot_hg38.bed.gz Processed file md5 0509ec705e3559448882d193269853a1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate1_GSE89193_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate1_GSE89193_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=DASHR2_GEO_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/DASHR2_GEO_hg38/prostate1_GSE89193_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/DASHR2_GEO_hg38/ Raw file md5 c35fc277185423e95aef2e78ef46f727 Data Category Small RNA Genomic feature type Small RNA-Seq annotated peaks Track Description Original_cell_type=Prostate;DASHR_source_id= GSE89193;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Reproductive life stage Unknown trackName DASHR2 Prostate Small RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZLF72ZCN3 Download track DASHR2 HT-29 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZLF72ZCN3 Data Source DASHR2 Download track Download Number of intervals 637 bp covered 33,309 Output type annotated peaks Genome build hg38 cell type HT-29 Biosample type Immortalized cell line Biosamples term id EFO:0001193 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 69,657 Downloaded date 06/30/2018 Release date 11/20/2014 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/HT-29-rep1_ENCSR807KQN_peaks_annot_hg38.bed.gz Processed file md5 2b0107870927f3f540c6736e545e071b wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/HT-29-rep1_ENCSR807KQN_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/HT-29-rep1_ENCSR807KQN_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/HT-29-rep1_ENCSR807KQN_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 8ee785272807789abceb76ca61c3e40b Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=HT-29 cell line replicate 1;DASHR_source_id= ENCSR807KQN;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=EFO:0001193;is_hg38_lifted=no system category Digestive life stage Unknown trackName DASHR2 HT-29 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZO6EZ55RM Download track DASHR2 K562 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZO6EZ55RM Data Source DASHR2 Download track Download Number of intervals 8,259 bp covered 134,101 Output type unannotated peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 592,276 Downloaded date 06/30/2018 Release date 03/19/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/K562_SRR446398_peaks_unannot_hg38.bed.gz Processed file md5 8272689b7123e559c5fa61d70a10ecbc wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/K562_SRR446398_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/K562_SRR446398_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/K562_SRR446398_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 7890509f4a27653ff07d7299a33e496a Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=K562 cell line;DASHR_source_id= SRR446398;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Cardiovascular life stage Unknown trackName DASHR2 K562 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZP6RZUBMT Download track DASHR2 IMR-90 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Fetal]
Show metadata Identifier NGDSHZP6RZUBMT Data Source DASHR2 Download track Download Number of intervals 37,574 bp covered 861,954 Output type unannotated peaks Genome build hg38 cell type IMR-90 Biosample type Cell line Biosamples term id EFO:0001196 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 2,521,348 Downloaded date 06/30/2018 Release date 07/26/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/IMR90_SRR527621_peaks_unannot_hg38.bed.gz Processed file md5 b8cce051c5bcd8c683d44329797abbf1 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/IMR90_SRR527621_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/IMR90_SRR527621_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/IMR90_SRR527621_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_GEO_hg38/ Raw file md5 cfffe0d716d1a17b08af6834978b5bd5 Data Category Small RNA Genomic feature type short total RNA-Seq unannotated peaks Track Description Original_cell_type=IMR 90 cell line - fetal lung fibroblast;DASHR_source_id= SRR527621;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=EFO:0001196;is_hg38_lifted=no system category Respiratory life stage Fetal trackName DASHR2 IMR-90 short total RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Fetal]
NGDSHZPRVZ56S4 Download track DASHR2 MCF-7 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZPRVZ56S4 Data Source DASHR2 Download track Download Number of intervals 2,077 bp covered 74,741 Output type annotated peaks Genome build hg38 cell type MCF-7 Biosample type Immortalized cell line Biosamples term id EFO:0001203 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 215,736 Downloaded date 06/30/2018 Release date 07/09/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/MCF-7-rep3_ENCSR000CSX_peaks_annot_hg38.bed.gz Processed file md5 a4fe17380bdf56fd6d8efae21d67efff wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/MCF-7-rep3_ENCSR000CSX_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/MCF-7-rep3_ENCSR000CSX_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/MCF-7-rep3_ENCSR000CSX_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 d5e10e12cfc36fddf1ccf25ee00bd69b Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=MCF-7 cell line replicate 3;DASHR_source_id= ENCSR000CSX;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Reproductive life stage Unknown trackName DASHR2 MCF-7 short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZS5OGMKKV Download track DASHR2 Prostate Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZS5OGMKKV Data Source DASHR2 Download track Download Number of intervals 9,020 bp covered 148,962 Output type unannotated peaks Genome build hg38 cell type Prostate Biosample type Tissue Biosamples term id UBERON:0002367 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay Small RNA-Seq File format bed bed6+52 DASHR File size 654,713 Downloaded date 06/30/2018 Release date 04/19/2016 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate2_GSE80400_peaks_unannot_hg38.bed.gz Processed file md5 c4561e98a7312e2e4242ada6bf2b6b96 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate2_GSE80400_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/prostate2_GSE80400_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR2_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=DASHR2_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/DASHR2_GEO_hg38/prostate2_GSE80400_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/DASHR2_GEO_hg38/ Raw file md5 5fb24b2b9a0718f636c3591d6be385c0 Data Category Small RNA Genomic feature type Small RNA-Seq unannotated peaks Track Description Original_cell_type=Prostate;DASHR_source_id= GSE80400;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Reproductive life stage Unknown trackName DASHR2 Prostate Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZSVGLZ7SY Download track DASHR2 Liver Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZSVGLZ7SY Data Source DASHR2 Download track Download Number of intervals 5,099 bp covered 89,087 Output type unannotated peaks Genome build hg38 cell type Liver Biosample type Tissue Biosamples term id UBERON:0002107 Tissue category Liver ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay Small RNA-Seq File format bed bed6+52 DASHR File size 374,566 Downloaded date 06/30/2018 Release date 04/10/2010 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/liver3_GSE21279_peaks_unannot_hg38.bed.gz Processed file md5 9df5c85ca9000f48d00a256d8aa4620a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/liver3_GSE21279_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/liver3_GSE21279_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=DASHR1_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/liver3_GSE21279_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/ Raw file md5 88a9f1890ec74e00526473e4a7157010 Data Category Small RNA Genomic feature type Small RNA-Seq unannotated peaks Track Description Original_cell_type=Liver;DASHR_source_id= GSE21279;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Digestive life stage Unknown trackName DASHR2 Liver Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZU6SQTM2O Download track DASHR2 Osteoblast short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZU6SQTM2O Data Source DASHR2 Download track Download Number of intervals 2,050 bp covered 81,189 Output type annotated peaks Genome build hg38 cell type Osteoblast Biosample type Primary cell Biosamples term id CL:0000062 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay short total RNA-Seq File format bed bed6+52 DASHR File size 214,798 Downloaded date 06/30/2018 Release date 07/09/2012 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/osteoblast-rep1_ENCSR000CUW_peaks_annot_hg38.bed.gz Processed file md5 e4287aceee506b7975891c0fc56e9433 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/osteoblast-rep1_ENCSR000CUW_peaks_annot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/osteoblast-rep1_ENCSR000CUW_peaks_annot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/short_total_RNA-seq/hg38/ENCODE_dataportal_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=ENCODE_dataportal_hg38&table=peaks Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/osteoblast-rep1_ENCSR000CUW_peaks_annot.bed -P GADB/Annotationtracks/Downloads/DASHR/ENCODE_dataportal_hg38/ Raw file md5 d150f84497767fd3cef075d2e739a37a Data Category Small RNA Genomic feature type short total RNA-Seq annotated peaks Track Description Original_cell_type=Osteoblast replicate 1;DASHR_source_id= ENCSR000CUW;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Skeletal life stage Unknown trackName DASHR2 Osteoblast short total RNA-Seq annotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGDSHZYEZ47V2P Download track DASHR2 Rectum Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
Show metadata Identifier NGDSHZYEZ47V2P Data Source DASHR2 Download track Download Number of intervals 14,295 bp covered 239,362 Output type unannotated peaks Genome build hg38 cell type Rectum Biosample type Tissue Biosamples term id UBERON:0001052 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay Small RNA-Seq File format bed bed6+52 DASHR File size 979,022 Downloaded date 06/30/2018 Release date 09/18/2013 Date added to FILER 02/19/2019 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/colonrectum1_GSE46622_peaks_unannot_hg38.bed.gz Processed file md5 295e683d7ae4be2b007ed98c4d72092d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/colonrectum1_GSE46622_peaks_unannot_hg38.bed.gz -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/colonrectum1_GSE46622_peaks_unannot_hg38.bed.gz.tbi -P GADB/Annotationtracks/DASHRv2/Small_RNA-Seq/hg38/DASHR1_GEO_hg38/ Link out URL http://dashr2.lisanwanglab.org/index.php Raw File URL http://dashr2.lisanwanglab.org/table2csv.php?dataSourceDownload=DASHR1_GEO_hg38&table=peaksUnannot Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/colonrectum1_GSE46622_peaks_unannot.bed -P GADB/Annotationtracks/Downloads/DASHR/DASHR1_GEO_hg38/ Raw file md5 2e6ac8a3729640a748bc281bcc0f13b5 Data Category Small RNA Genomic feature type Small RNA-Seq unannotated peaks Track Description Original_cell_type=Rectum;DASHR_source_id= GSE46622;schema=BED6+52;dataSource_pubmed_id=30668832;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/DASHR2.html;dataSource_ontology=Not available;is_hg38_lifted=no system category Digestive life stage Unknown trackName DASHR2 Rectum Small RNA-Seq unannotated peaks (bed6+52 DASHR) [Life stage: Unknown]
NGENC223TTUIHJ Download track ENCODE Stomach (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR726YMS] [Life stage: Embryonic]
Show metadata Identifier NGENC223TTUIHJ Data Source ENCODE Download track Download Number of intervals 75,833 bp covered 866,414 Output type footprints Genome build hg38 cell type Stomach Biosample type Tissue Biosamples term id UBERON:0000945 Tissue category Digestive ENCODE Experiment id ENCSR726YMS Biological replicate(s) 1 Technical replicate 1_4 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 533,655 Downloaded date 06/12/2022 Release date 11/11/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF373FKZ.bed.gz Processed file md5 d9232bd1cf4fa359ac20a899a8c97c2d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF373FKZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF373FKZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF373FKZ/@@download/ENCFF373FKZ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF373FKZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a14e1b880261046344273933dfb40926 Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens stomach tissue female embryo;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728217;External_resources=GEO:GSM878 system category Digestive life stage Embryonic trackName ENCODE Stomach (repl. 1) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR726YMS] [Life stage: Embryonic]
NGENC2246CV57K Download track ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR420NOA] [Life stage: Adult]
Show metadata Identifier NGENC2246CV57K Data Source ENCODE Download track Download Number of intervals 186,778 bp covered 2,151,919 Output type footprints Genome build hg38 cell type Hematopoietic multipotent progenitor cell Biosample type In vitro differentiated cells Biosamples term id CL:0000837 Tissue category Blood ENCODE Experiment id ENCSR420NOA Biological replicate(s) 2 Technical replicate 2_1 Antibody Not applicable Assay DNase-seq File format bed bed5 ENCODE File size 1,274,577 Downloaded date 06/12/2022 Release date 11/06/2020 Date added to FILER 02/06/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF818LQF.bed.gz Processed file md5 95c80c95db6424befa1ba4877c0bff05 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF818LQF.bed.gz -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ENCFF818LQF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/DNase-seq/bed5-FDR_footprints/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF818LQF/@@download/ENCFF818LQF.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF818LQF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 358366703e5a57f406cb09cdd6c7f2fe Data Category Accessible chromatin Genomic feature type DNase-seq footprints Track Description Biosample_summary=Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 11 days, kit ligand for 11 days, hydrocortisone succinate for 11 days, erythropoietin for 11 days;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1, system category Cardiovascular life stage Adult trackName ENCODE Hematopoietic multipotent progenitor cell (repl. 2) DNase-seq footprints (bed5 ENCODE) [Experiment: ENCSR420NOA] [Life stage: Adult]
NGENC225CUAW44 Download track ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR435JKM] [Life stage: Adult]
Show metadata Identifier NGENC225CUAW44 Data Source ENCODE Download track Download Number of intervals 68,169 bp covered 97,705,189 Output type pseudoreplicated peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR435JKM Biological replicate(s) 1, 2, 3 Technical replicate 1_1, 2_1, 3_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,944,788 Downloaded date 07/10/2025 Release date 10/02/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF897VKP.bed.gz Processed file md5 e436ca1481364cb2a2e872a0867bb502 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF897VKP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ENCFF897VKP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF897VKP/@@download/ENCFF897VKP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF897VKP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 94a8183b41364b494f9de46c89323bd9 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 12 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE91263;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-07-21;Submitted_track_name=p system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2, 3) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR435JKM] [Life stage: Adult]
NGENC225YJHNZ7 Download track ENCODE CD8+ T cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR835OJV] [Life stage: Unknown]
Show metadata Identifier NGENC225YJHNZ7 Data Source ENCODE Download track Download Number of intervals 23,973 bp covered 31,441,665 Output type replicated peaks Genome build hg38 cell type CD8+ T cell Biosample type Primary cell Biosamples term id CL:0001050 Tissue category Blood ENCODE Experiment id ENCSR835OJV Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 706,113 Downloaded date 06/12/2022 Release date 01/29/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF958TBS.bed.gz Processed file md5 9509ec792383fe231b6530fcd1af0f08 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF958TBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF958TBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF958TBS/@@download/ENCFF958TBS.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF958TBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 81a7b409d2610b184e3fba8f8d3d5e70 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac replicated peaks Track Description Biosample_summary=Homo sapiens CD8-positive, alpha-beta T cell;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ccre_inputv2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM772949,GEO:GSM772976,SCREEN-GRCh38:CD8-positive_alpha-beta_T_ system category Cardiovascular life stage Unknown trackName ENCODE CD8+ T cell (repl. 1, 2) Histone ChIP-seq H3K27ac-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR835OJV] [Life stage: Unknown]
NGENC227FX7TQZ Download track ENCODE A549 (repl. 2) TF ChIP-seq NR3C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR458VTP] [Life stage: Adult]
Show metadata Identifier NGENC227FX7TQZ Data Source ENCODE Download track Download Number of intervals 25,645 bp covered 10,765,481 Output type IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR458VTP Biological replicate(s) 2 Technical replicate 2_1 Antibody NR3C1 Assay TF ChIP-seq File format bed narrowPeak File size 483,032 Downloaded date 07/10/2025 Release date 01/02/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF934ELC.bed.gz Processed file md5 4368329ae3cb76da9f8df61215741b53 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF934ELC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF934ELC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF934ELC/@@download/ENCFF934ELC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF934ELC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 707b99232e0cbd9d5f6c73f2fefd9162 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 20 minutes;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE175268,FactorBook:ENCSR458VTP;Project=GGR;Award=U01HG007900;Exper system category Respiratory life stage Adult trackName ENCODE A549 (repl. 2) TF ChIP-seq NR3C1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR458VTP] [Life stage: Adult]
NGENC227REAJEV Download track ENCODE Peyers patch (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR878KIY] [Life stage: Adult]
Show metadata Identifier NGENC227REAJEV Data Source ENCODE Download track Download Number of intervals 29,575 bp covered 39,887,358 Output type pseudoreplicated peaks Genome build hg38 cell type Peyers patch Biosample type Tissue Biosamples term id UBERON:0001211 Tissue category Immune ENCODE Experiment id ENCSR878KIY Biological replicate(s) 2 Technical replicate 2_1 Antibody H3K4me3 Assay Histone ChIP-seq File format bed narrowPeak File size 830,407 Downloaded date 06/12/2022 Release date 08/14/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF544MZI.bed.gz Processed file md5 604942c6de3b2328ce3ee5065582c4e0 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF544MZI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF544MZI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF544MZI/@@download/ENCFF544MZI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF544MZI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1d2adb23aafee5303ee81480d3efb778 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ccre_inputv2,ENTEx,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE96443,SCREEN-GRCh system category Lymphatic life stage Adult trackName ENCODE Peyers patch (repl. 2) Histone ChIP-seq H3K4me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR878KIY] [Life stage: Adult]
NGENC22A6AD5FL Download track ENCODE Liver (repl. 1) TF ChIP-seq RXRA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR098XMN] [Life stage: Adult]
Show metadata Identifier NGENC22A6AD5FL Data Source ENCODE Download track Download Number of intervals 61,366 bp covered 23,831,506 Output type IDR thresholded peaks Genome build hg38 cell type Liver Biosample type Tissue Biosamples term id UBERON:0002107 Tissue category Liver ENCODE Experiment id ENCSR098XMN Biological replicate(s) 1 Technical replicate 1_1 Antibody RXRA Assay TF ChIP-seq File format bed narrowPeak File size 1,062,061 Downloaded date 06/12/2022 Release date 12/09/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597QDM.bed.gz Processed file md5 c672bd16aa95ccf606430a76b599c726 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597QDM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597QDM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF597QDM/@@download/ENCFF597QDM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF597QDM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 469c1b13f80085eb81b6596505fdcc36 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 32 years;Reference=NR;External_resources=FactorB system category Digestive life stage Adult trackName ENCODE Liver (repl. 1) TF ChIP-seq RXRA IDR thresholded peaks (narrowPeak) [Experiment: ENCSR098XMN] [Life stage: Adult]
NGENC22ACPXOEU Download track ENCODE K562 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR483RKN] [Life stage: Adult]
Show metadata Identifier NGENC22ACPXOEU Data Source ENCODE Download track Download Number of intervals 123,009 bp covered 116,961,890 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR483RKN Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 2,637,268 Downloaded date 06/12/2022 Release date 02/24/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF803NXN.bed.gz Processed file md5 667301ecf895ee04f6a35a1ce713fe4a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF803NXN.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF803NXN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF803NXN/@@download/ENCFF803NXN.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF803NXN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7d20163adf197d8b400bf02ae7dff026 Data Category Accessible chromatin Genomic feature type ATAC-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=Deeply Profiled,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE170214;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-07-21;Submitted_track_name=pooled-pr1_vs_poo system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq IDR thresholded peaks (narrowPeak) [Experiment: ENCSR483RKN] [Life stage: Adult]
NGENC22AKBTOYT Download track ENCODE Panc1 (repl. 1, 2) TF ChIP-seq REST IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BUP] [Life stage: Adult]
Show metadata Identifier NGENC22AKBTOYT Data Source ENCODE Download track Download Number of intervals 6,716 bp covered 2,962,695 Output type IDR thresholded peaks Genome build hg38 cell type Panc1 Biosample type Cell line Biosamples term id EFO:0002713 Tissue category Digestive ENCODE Experiment id ENCSR000BUP Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody REST Assay TF ChIP-seq File format bed narrowPeak File size 128,838 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF518EEQ.bed.gz Processed file md5 62e355185ddac65dc7e61a2ba640c70e wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF518EEQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF518EEQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF518EEQ/@@download/ENCFF518EEQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF518EEQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 158336ef531d9cb298802d4c9fa106ef Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens Panc1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 56 years;Reference=NR;External_resources=GEO:GSM1010859,FactorBook:ENCSR000BUP,UCSC-ENCODE-hg19:wgEncodeEH003285;Project=ENCODE;Award=U54 system category Digestive life stage Adult trackName ENCODE Panc1 (repl. 1, 2) TF ChIP-seq REST IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BUP] [Life stage: Adult]
NGENC22C3PUMQH Download track ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR553QIO] [Life stage: Adult]
Show metadata Identifier NGENC22C3PUMQH Data Source ENCODE Download track Download Number of intervals 108,817 bp covered 83,627,652 Output type pseudoreplicated peaks Genome build hg38 cell type CD8+ alpha-beta memory cell Biosample type Primary cell Biosamples term id CL:0000909 Tissue category Blood ENCODE Experiment id ENCSR553QIO Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27ac Assay Mint-ChIP-seq File format bed narrowPeak File size 2,878,362 Downloaded date 06/12/2022 Release date 05/06/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF225XIX.bed.gz Processed file md5 8559d4ff038ad7aa239fef53b1d8b3e6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF225XIX.bed.gz -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ENCFF225XIX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Mint-ChIP-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF225XIX/@@download/ENCFF225XIX.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF225XIX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 d6e59c9015f2bde088534d6758cc45d9 Data Category Histone ChIP-seq peaks Genomic feature type Mint-ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens CD8-positive, alpha-beta memory T cell male adult (30 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=NR;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE177329;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-05-14,2021-04-28 system category Cardiovascular life stage Adult trackName ENCODE CD8+ alpha-beta memory cell (repl. 1) Mint-ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR553QIO] [Life stage: Adult]
NGENC22CPW2UJM Download track ENCODE A549 (repl. 1, 2) TF ChIP-seq CEBPB conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR606ZTC] [Life stage: Adult]
Show metadata Identifier NGENC22CPW2UJM Data Source ENCODE Download track Download Number of intervals 16,205 bp covered 6,003,774 Output type conservative IDR thresholded peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR606ZTC Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody CEBPB Assay TF ChIP-seq File format bed narrowPeak File size 287,344 Downloaded date 07/10/2025 Release date 01/02/2021 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF041IOM.bed.gz Processed file md5 a9b94c8ccd98c7fe2d93c5b94ebf2991 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF041IOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF041IOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF041IOM/@@download/ENCFF041IOM.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF041IOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1e2ec23e590869756717033afb683133 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=FactorBook:ENCSR606ZTC,GEO:GSE91297;Project=GGR;Award=U01HG007900;Experimen system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) TF ChIP-seq CEBPB conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR606ZTC] [Life stage: Adult]
NGENC22ENIZSYU Download track ENCODE K562 (repl. 1) TF ChIP-seq SIRT6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOH] [Life stage: Adult]
Show metadata Identifier NGENC22ENIZSYU Data Source ENCODE Download track Download Number of intervals 327 bp covered 88,111 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR000DOH Biological replicate(s) 1 Technical replicate 1_1 Antibody SIRT6 Assay TF ChIP-seq File format bed narrowPeak File size 6,014 Downloaded date 06/12/2022 Release date 12/27/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF782PJP.bed.gz Processed file md5 a2abe25cfa1abdbca417c107549e2ca7 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF782PJP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF782PJP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF782PJP/@@download/ENCFF782PJP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF782PJP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 4075126e60ea030b682542f47673eecd Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH000681,GEO:GSM935371;Project=EN system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1) TF ChIP-seq SIRT6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOH] [Life stage: Adult]
NGENC22GJN4GMC Download track ENCODE K562 (repl. 3, 4) TF ChIP-seq ZBTB40 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR158RYZ] [Life stage: Adult]
Show metadata Identifier NGENC22GJN4GMC Data Source ENCODE Download track Download Number of intervals 18,714 bp covered 10,599,472 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR158RYZ Biological replicate(s) 3, 4 Technical replicate 3_1, 4_1 Antibody ZBTB40 Assay TF ChIP-seq File format bed narrowPeak File size 370,715 Downloaded date 06/12/2022 Release date 12/04/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF337GJB.bed.gz Processed file md5 6065d3e9bc01fe7097ef41bc690d4b86 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF337GJB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF337GJB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF337GJB/@@download/ENCFF337GJB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF337GJB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 dd8f50d844d21f7a9c15597e98db530d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_re system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 3, 4) TF ChIP-seq ZBTB40 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR158RYZ] [Life stage: Adult]
NGENC22GREWQLZ Download track ENCODE Mid-neurogenesis radial glial cell (repl. 1, 2) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR113LFZ] [Life stage: Embryonic]
Show metadata Identifier NGENC22GREWQLZ Data Source ENCODE Download track Download Number of intervals 25,113 bp covered 38,211,356 Output type pseudoreplicated peaks Genome build hg38 cell type Mid-neurogenesis radial glial cell Biosample type In vitro differentiated cells Biosamples term id Not available Tissue category Brain ENCODE Experiment id ENCSR113LFZ Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 580,025 Downloaded date 06/12/2022 Release date 11/13/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF064SZQ.bed.gz Processed file md5 9668cc180e91c9f785367b93b7c7766d wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF064SZQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF064SZQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF064SZQ/@@download/ENCFF064SZQ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF064SZQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 fb4144048a8d8f8ae4a144900e55a4d3 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=embryonic 5 days;Reference=PMID:32728046;External_resources=GEO:GSE95927;Project= system category Nervous life stage Embryonic trackName ENCODE Mid-neurogenesis radial glial cell (repl. 1, 2) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR113LFZ] [Life stage: Embryonic]
NGENC22HIZYL32 Download track ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Life stage: Adult]
Show metadata Identifier NGENC22HIZYL32 Data Source ENCODE Download track Download Number of intervals 162,963 bp covered 127,663,268 Output type replicated peaks Genome build hg38 cell type CD8+ alpha-beta naive T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id ENCSR863TVR Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 4,265,581 Downloaded date 06/12/2022 Release date 10/08/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034YCY.bed.gz Processed file md5 8bcfac4cdad3ec00ddbc35f302264c03 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034YCY.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF034YCY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF034YCY/@@download/ENCFF034YCY.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF034YCY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 1b42113ac96f96f35ebba39ef6e10acd Data Category Accessible chromatin Genomic feature type ATAC-seq replicated peaks Track Description Biosample_summary=Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 3 system category Cardiovascular life stage Adult trackName ENCODE CD8+ alpha-beta naive T cell (repl. 1, 2) ATAC-seq replicated peaks (narrowPeak) [Experiment: ENCSR863TVR] [Life stage: Adult]
NGENC22JCFYL7T Download track ENCODE K562 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR978HFU] [Life stage: Adult]
Show metadata Identifier NGENC22JCFYL7T Data Source ENCODE Download track Download Number of intervals 13,611 bp covered 7,243,561 Output type conservative IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR978HFU Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay ATAC-seq File format bed narrowPeak File size 336,517 Downloaded date 07/10/2025 Release date 08/24/2020 Date added to FILER 07/31/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF218HKU.bed.gz Processed file md5 08f359c7be9e7dce4d57f0e8ab880571 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF218HKU.bed.gz -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ENCFF218HKU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ATAC-seq/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF218HKU/@@download/ENCFF218HKU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF218HKU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7be2327d7a118892cc6aa4baa1f7cea2 Data Category Accessible chromatin Genomic feature type ATAC-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 treated with 100 nM GSK J4 for 4 hours;Lab=Will Greenleaf, Stanford;ENCODE_internal_tags=NR;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE173050;Project=ENCODE;Award=UM1HG009436;Experiment_date_released=2021-03-15;Submitted_track_name=rep1_v system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) ATAC-seq conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR978HFU] [Life stage: Adult]
NGENC22LBQ4SSJ Download track ENCODE HepG2 (repl. 1) TF ChIP-seq ZBTB38 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR932ZRD] [Life stage: Child]
Show metadata Identifier NGENC22LBQ4SSJ Data Source ENCODE Download track Download Number of intervals 29,088 bp covered 14,539,356 Output type IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR932ZRD Biological replicate(s) 1 Technical replicate 1_1 Antibody ZBTB38 Assay TF ChIP-seq File format bed narrowPeak File size 502,019 Downloaded date 06/12/2022 Release date 08/22/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF513CTC.bed.gz Processed file md5 172f9bfe2c31164601e92bbe0fe34bb2 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF513CTC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF513CTC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF513CTC/@@download/ENCFF513CTC.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF513CTC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 7dff124dc9c92233401d75efb0b1b2ae Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB38;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE175329;Project=ENCODE;Award=UM1HG009411;Exper system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1) TF ChIP-seq ZBTB38 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR932ZRD] [Life stage: Child]
NGENC22LFFY7QP Download track ENCODE K562 (repl. 1, 2) eCLIP TARDBP peaks (narrowPeak) [Experiment: ENCSR720BJU] [Life stage: Adult]
Show metadata Identifier NGENC22LFFY7QP Data Source ENCODE Download track Download Number of intervals 4,592 bp covered 385,768 Output type peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR720BJU Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody TARDBP Assay eCLIP File format bed narrowPeak File size 98,016 Downloaded date 05/15/2024 Release date 02/01/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF196UFB.bed.gz Processed file md5 9c4ce792481dbb58da629c2e75662069 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF196UFB.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF196UFB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF196UFB/@@download/ENCFF196UFB.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF196UFB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 0ce49d7f20269f6f0e3a3358790c8ac1 Data Category RNA binding Genomic feature type eCLIP peaks Track Description Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE284862;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2022-07-19;Submitted_track_name=4014_CLIP1_rep1.vs.4014_CLIP2_rep2.sorted.nh.bb;ENC system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 1, 2) eCLIP TARDBP peaks (narrowPeak) [Experiment: ENCSR720BJU] [Life stage: Adult]
NGENC22LKKMWHR Download track ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR914RMX] [Life stage: Adult]
Show metadata Identifier NGENC22LKKMWHR Data Source ENCODE Download track Download Number of intervals 64,229 bp covered 68,201,401 Output type pseudoreplicated peaks Genome build hg38 cell type Middle frontal area BA46 Biosample type Tissue Biosamples term id UBERON:0006483 Tissue category Brain ENCODE Experiment id ENCSR914RMX Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27me3 Assay Histone ChIP-seq File format bed narrowPeak File size 1,310,649 Downloaded date 06/12/2022 Release date 04/10/2021 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF756LXD.bed.gz Processed file md5 9545c3f47c6973b886eaf41f1b0d0c8a wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF756LXD.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF756LXD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF756LXD/@@download/ENCFF756LXD.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF756LXD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 40bb8cddbe79ff7540a10bc380023f90 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27me3 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens with mild cognitive impairment| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE175321;Project=E system category Nervous life stage Adult trackName ENCODE Middle frontal area BA46 (repl. 1) Histone ChIP-seq H3K27me3-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR914RMX] [Life stage: Adult]
NGENC22LM5QJ3Y Download track ENCODE K562 (repl. 2) TF ChIP-seq ZBTB17 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR026KKZ] [Life stage: Adult]
Show metadata Identifier NGENC22LM5QJ3Y Data Source ENCODE Download track Download Number of intervals 8,380 bp covered 3,476,076 Output type IDR thresholded peaks Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id ENCSR026KKZ Biological replicate(s) 2 Technical replicate 2_1 Antibody ZBTB17 Assay TF ChIP-seq File format bed narrowPeak File size 160,630 Downloaded date 06/12/2022 Release date 07/07/2020 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF599HNV.bed.gz Processed file md5 f501c4346813324300cddaa0e8efc8d8 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF599HNV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF599HNV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF599HNV/@@download/ENCFF599HNV.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF599HNV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 e941d764586163d85c49d9541e0c062d Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks Track Description Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE169915;Project=ENCODE;Award=UM1HG009442;E system category Cardiovascular life stage Adult trackName ENCODE K562 (repl. 2) TF ChIP-seq ZBTB17 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR026KKZ] [Life stage: Adult]
NGENC22LRLN76S Download track ENCODE GM12878 (repl. 1, 2) TF ChIP-seq TARDBP conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR016UEH] [Life stage: Adult]
Show metadata Identifier NGENC22LRLN76S Data Source ENCODE Download track Download Number of intervals 5,085 bp covered 1,657,924 Output type conservative IDR thresholded peaks Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id ENCSR016UEH Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody TARDBP Assay TF ChIP-seq File format bed narrowPeak File size 98,030 Downloaded date 06/12/2022 Release date 02/04/2021 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771XVU.bed.gz Processed file md5 d903ef96e467edaac5657ac5b75bbe31 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771XVU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771XVU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF771XVU/@@download/ENCFF771XVU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF771XVU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 bfb7c2592141bb0f3574f3055f271147 Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE95886;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-0 system category Cardiovascular life stage Adult trackName ENCODE GM12878 (repl. 1, 2) TF ChIP-seq TARDBP conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR016UEH] [Life stage: Adult]
NGENC22MPUP7OB Download track ENCODE Neural cell (repl. 1, 2) Histone ChIP-seq H3K36me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR714KGG] [Life stage: Embryonic]
Show metadata Identifier NGENC22MPUP7OB Data Source ENCODE Download track Download Number of intervals 21,326 bp covered 14,537,664 Output type replicated peaks Genome build hg38 cell type Neural cell Biosample type In vitro differentiated cells Biosamples term id CL:0002319 Tissue category Brain ENCODE Experiment id ENCSR714KGG Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K36me3 Assay Histone ChIP-seq File format bed narrowPeak File size 490,068 Downloaded date 06/12/2022 Release date 10/28/2020 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787OKR.bed.gz Processed file md5 9150ab369034e25ec5c8d7c4d2f16121 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787OKR.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF787OKR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF787OKR/@@download/ENCFF787OKR.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF787OKR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 026c36cecabb8995361f53da18ef0ebb Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K36me3 replicated peaks Track Description Biosample_summary=Homo sapiens neural cell originated from H1;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSE96331;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2014-07-11, system category Nervous life stage Embryonic trackName ENCODE Neural cell (repl. 1, 2) Histone ChIP-seq H3K36me3-histone-mark replicated peaks (narrowPeak) [Experiment: ENCSR714KGG] [Life stage: Embryonic]
NGENC22NSQ64ZY Download track ENCODE HepG2 (repl. 1, 2) TF ChIP-seq REL conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR136QQF] [Life stage: Child]
Show metadata Identifier NGENC22NSQ64ZY Data Source ENCODE Download track Download Number of intervals 9,317 bp covered 6,649,356 Output type conservative IDR thresholded peaks Genome build hg38 cell type HepG2 Biosample type Cell line Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id ENCSR136QQF Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody REL Assay TF ChIP-seq File format bed narrowPeak File size 186,185 Downloaded date 05/15/2024 Release date 07/23/2022 Date added to FILER 08/21/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF232LZK.bed.gz Processed file md5 6b29509ab66e8a9ce6899bee12c52c62 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF232LZK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF232LZK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF232LZK/@@download/ENCFF232LZK.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF232LZK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 4fd32d566507286601b30a436c4809ef Data Category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks Track Description Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REL;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE231129;Project=ENCODE;Award=UM1HG009411;Experime system category Digestive life stage Child trackName ENCODE HepG2 (repl. 1, 2) TF ChIP-seq REL conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR136QQF] [Life stage: Child]
NGENC22R3HJQAQ Download track ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR256YSL] [Life stage: Unknown]
Show metadata Identifier NGENC22R3HJQAQ Data Source ENCODE Download track Download Number of intervals 123,850 bp covered 223,087,923 Output type pseudoreplicated peaks Genome build hg38 cell type BLaER1 Biosample type Cell line Biosamples term id EFO:0030018 Tissue category Blood ENCODE Experiment id ENCSR256YSL Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me2 Assay Histone ChIP-seq File format bed narrowPeak File size 3,487,697 Downloaded date 05/15/2024 Release date 02/21/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF153BQI.bed.gz Processed file md5 6ad852496f12e850d28f4d1710297022 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF153BQI.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF153BQI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF153BQI/@@download/ENCFF153BQI.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF153BQI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 04948f968ab625765d2e5f79e36bd686 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257415;Project=community;Award=ERC-2011-AdG-294653-RNA-M system category Cardiovascular life stage Unknown trackName ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR256YSL] [Life stage: Unknown]
NGENC22RDBJ3YA Download track ENCODE A549 (repl. 1, 2) PRO-seq bidirectional peaks (bed_dREG) [Experiment: ENCSR988BZM] [Life stage: Adult]
Show metadata Identifier NGENC22RDBJ3YA Data Source ENCODE Download track Download Number of intervals 24,526 bp covered 12,214,620 Output type bidirectional peaks Genome build hg38 cell type A549 Biosample type Cell line Biosamples term id EFO:0001086 Tissue category Lung ENCODE Experiment id ENCSR988BZM Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody Not applicable Assay PRO-seq File format bed bed_dREG File size 705,409 Downloaded date 06/12/2022 Release date 09/24/2021 Date added to FILER 11/08/2022 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/PRO-seq/bed6/hg38/ENCFF459FLU.bed.gz Processed file md5 c63fbbbc8568ca6b3fc2bd19cbb116cd wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/PRO-seq/bed6/hg38/ENCFF459FLU.bed.gz -P GADB/Annotationtracks/ENCODE/data/PRO-seq/bed6/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/PRO-seq/bed6/hg38/ENCFF459FLU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/PRO-seq/bed6/hg38/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF459FLU/@@download/ENCFF459FLU.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF459FLU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 76f599e607964e912ba6cabb8db39268 Data Category Transcription Genomic feature type PRO-seq bidirectional peaks Track Description Biosample_summary=Homo sapiens A549 treated with 1 nM dexamethasone for 45 minutes;Lab=John Lis, Cornell;ENCODE_internal_tags=NR;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM5169137;Project=ENCODE;Award=UM1HG009393;Experiment_date_released=2021-09-29;Submitted_track_name=A549 system category Respiratory life stage Adult trackName ENCODE A549 (repl. 1, 2) PRO-seq bidirectional peaks (bed_dREG) [Experiment: ENCSR988BZM] [Life stage: Adult]
NGENC22RIQ5AQC Download track ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR693KAX] [Life stage: Unknown]
Show metadata Identifier NGENC22RIQ5AQC Data Source ENCODE Download track Download Number of intervals 122,912 bp covered 218,292,115 Output type pseudoreplicated peaks Genome build hg38 cell type BLaER1 Biosample type Cell line Biosamples term id EFO:0030018 Tissue category Blood ENCODE Experiment id ENCSR693KAX Biological replicate(s) 1, 2 Technical replicate 1_1, 2_1 Antibody H3K4me2 Assay Histone ChIP-seq File format bed narrowPeak File size 3,515,770 Downloaded date 05/15/2024 Release date 02/26/2023 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417IPJ.bed.gz Processed file md5 e392bba41cdd501192a6b1e6ad2291e6 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417IPJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF417IPJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF417IPJ/@@download/ENCFF417IPJ.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF417IPJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 6c38ac5b2ad26678754d992c0c9d8e06 Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K4me2 pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens BLaER1;Lab=Roderic Guigo, CRG;ENCODE_internal_tags=NR;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE257732;Project=community;Award=ERC-2011-AdG-294653-RNA-MAPS;Experiment_date_released=2022-05-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.overlap.bfilt.na system category Cardiovascular life stage Unknown trackName ENCODE BLaER1 (repl. 1, 2) Histone ChIP-seq H3K4me2-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR693KAX] [Life stage: Unknown]
NGENC22SEKEEKM Download track ENCODE Liver lobe (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR119XNK] [Life stage: Child]
Show metadata Identifier NGENC22SEKEEKM Data Source ENCODE Download track Download Number of intervals 58,888 bp covered 92,425,067 Output type pseudoreplicated peaks Genome build hg38 cell type Liver lobe Biosample type Tissue Biosamples term id UBERON:0001113 Tissue category Liver ENCODE Experiment id ENCSR119XNK Biological replicate(s) 1 Technical replicate 1_1, 1_2 Antibody H3K27ac Assay Histone ChIP-seq File format bed narrowPeak File size 1,628,039 Downloaded date 06/12/2022 Release date 06/06/2022 Date added to FILER 08/22/2024 Processed File Download URL https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708MKP.bed.gz Processed file md5 309de308373937c478f9e05c9e53a429 wget command wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708MKP.bed.gz -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ENCFF708MKP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg38/1/ Link out URL https://www.encodeproject.org Raw File URL https://www.encodeproject.org/files/ENCFF708MKP/@@download/ENCFF708MKP.bigBed Raw file download wget https://tf.lisanwanglab.org/GADB/Annotationtracks/Downloads/ENCODE/ENCFF708MKP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ Raw file md5 a16e72ca6660cccf4d2a535cd6080fee Data Category Histone ChIP-seq peaks Genomic feature type Histone ChIP-seq H3K27ac pseudoreplicated peaks Track Description Biosample_summary=Homo sapiens right lobe of liver tissue female child (16 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=child 16 years;Reference=NR;External_resources=GEO:GSE208895;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06- system category Digestive life stage Child trackName ENCODE Liver lobe (repl. 1) Histone ChIP-seq H3K27ac-histone-mark pseudoreplicated peaks (narrowPeak) [Experiment: ENCSR119XNK] [Life stage: Child]