NGADB27JJMB6UD Download track View in genome browser ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB27JJMB6UD Data Source ATACdb_v1.03 Download track Download Number of intervals 13,882 bp covered 7,298,452 Output type accessible chromatin region Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 459,363 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1112_accessible_chromatin_regions_hg38.bed.gz Processed file md5 5f7d300970eb36c55c519ebd6c2fefe2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1112_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1112_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1112.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1112.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 d49ebcb5be9ebda08c0584502f9ad444 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1112;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=13914;Length=7311.347 kb;GEO_SRA=SRR3336949;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB27QIQOMZN Download track View in genome browser ATACdb_v1.03 Mega ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB27QIQOMZN Data Source ATACdb_v1.03 Download track Download Number of intervals 34,382 bp covered 22,697,553 Output type accessible chromatin region Genome build hg38 cell type Mega Biosample type Primary cell Biosamples term id NCIT:C54653 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,156,503 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0620_accessible_chromatin_regions_hg38.bed.gz Processed file md5 884f1a1b2c44cc544abcc24fb4bb9d31 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0620_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0620_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0620.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0620.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f105a9feed74287bf8eeb2c3d9841ba0 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0620;Biosample_Type=Primary Cell;Tissue_Type=Bone marrow;Biosample_Name=Mega;Cancer_Type=Normal;Region_Number=34448;Length=22742.88 kb;GEO_SRA=SRR5356158;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Skeletal life stage Unknown trackName ATACdb_v1.03 Mega ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB27SAY6OEP Download track View in genome browser ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB27SAY6OEP Data Source ATACdb_v1.03 Download track Download Number of intervals 117,930 bp covered 1,593,599 Output type transcription factor binding sites Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id CL:1001608 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,345,084 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1082_hg38_motif_binding_sites.bed.gz Processed file md5 617afaaa26f0a14ce5b1f9e51bc56df8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1082_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1082_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1082;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=55283;Length=19280.19 kb;GEO_SRA=SRR3295018;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2AKKBPC2B Download track View in genome browser ATACdb_v1.03 Aska chCt ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2AKKBPC2B Data Source ATACdb_v1.03 Download track Download Number of intervals 11,121 bp covered 5,554,366 Output type accessible chromatin region Genome build hg38 cell type Aska chCt Biosample type Cell line Biosamples term id Not available Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 365,699 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0569_accessible_chromatin_regions_hg38.bed.gz Processed file md5 9c51b9ebc3e53bbc179269305bb0240b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0569_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0569_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0569.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0569.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 e36de26dc38c4453aa517f6bef014c34 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0569;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=Aska;Cancer_Type=Sarcoma;Region_Number=11147;Length=5531.506 kb;GEO_SRA=SRR7167357;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Skeletal life stage Unknown trackName ATACdb_v1.03 Aska chCt ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2B2Y2F2WZ Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2B2Y2F2WZ Data Source ATACdb_v1.03 Download track Download Number of intervals 2,016 bp covered 662,605 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 63,709 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0766_accessible_chromatin_regions_hg38.bed.gz Processed file md5 0917e1a26b3f1ee4a970fd09c2f03ab8 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0766_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0766_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0766.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0766.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f2c28a94664a9784bfcfd857f8b913d2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0766;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18499;Cancer_Type=Other;Region_Number=2028;Length=667.53 kb;GEO_SRA=SRR6412482;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2BOMJMDDQ Download track View in genome browser ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2BOMJMDDQ Data Source ATACdb_v1.03 Download track Download Number of intervals 240,165 bp covered 3,273,442 Output type transcription factor binding sites Genome build hg38 cell type FL3 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 8,639,666 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1153_hg38_motif_binding_sites.bed.gz Processed file md5 6acd95b26c8f372c99ea1b5126b9a64d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1153_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1153_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1153;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=78081;Length=46487.812 kb;GEO_SRA=SRR3066454;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2BXBTT32I Download track View in genome browser ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2BXBTT32I Data Source ATACdb_v1.03 Download track Download Number of intervals 133,343 bp covered 1,784,411 Output type transcription factor binding sites Genome build hg38 cell type T-helper 17 cell Biosample type Primary cell Biosamples term id CL:0000899 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,292,160 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0924_hg38_motif_binding_sites.bed.gz Processed file md5 6d7da481ce5a107de3f7a857431fe64f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0924_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0924_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0924;Biosample_Type=Primary Cell;Tissue_Type=Cytokine-secreting T helper cell (Th) counterparts;Biosample_Name=Th17;Cancer_Type=Other;Region_Number=26404;Length=15347.967 kb;GEO_SRA=SRR5831534;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=h system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 17 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2BZNM6JDM Download track View in genome browser ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2BZNM6JDM Data Source ATACdb_v1.03 Download track Download Number of intervals 72,716 bp covered 34,218,327 Output type accessible chromatin region Genome build hg38 cell type FL3 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,316,275 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1142_accessible_chromatin_regions_hg38.bed.gz Processed file md5 597f47223a87b7b280b97cce9a234299 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1142_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1142_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1142.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1142.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 4f106d8cf885e58f89924096ffe29d00 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1142;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=72802;Length=34289.525 kb;GEO_SRA=SRR3066443;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2C2VN2BON Download track View in genome browser ATACdb_v1.03 T98G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2C2VN2BON Data Source ATACdb_v1.03 Download track Download Number of intervals 99,584 bp covered 1,305,724 Output type transcription factor binding sites Genome build hg38 cell type T98G Biosample type Cell line Biosamples term id EFO:0002085 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,985,821 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0372_hg38_motif_binding_sites.bed.gz Processed file md5 d99491e2affea852342723012fc51d2c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0372_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0372_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0372;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=T98G;Cancer_Type=Glioblastoma;Region_Number=14588;Length=9460.903 kb;GEO_SRA=SRR6251849;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ack system category Nervous life stage Unknown trackName ATACdb_v1.03 T98G ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2CIJZ5HBG Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2CIJZ5HBG Data Source ATACdb_v1.03 Download track Download Number of intervals 109,527 bp covered 1,466,633 Output type transcription factor binding sites Genome build hg38 cell type Prefrontal cortex Biosample type Not applicable Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,666,963 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0471_hg38_motif_binding_sites.bed.gz Processed file md5 6585451211fd21e839a9c348d9492466 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0471_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0471_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0471;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=medial orbitofrontal cortex;Cancer_Type=Other;Region_Number=32170;Length=13557.937 kb;GEO_SRA=SRR5367738;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GA system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2CWY4DWIU Download track View in genome browser ATACdb_v1.03 Memory natural killer cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2CWY4DWIU Data Source ATACdb_v1.03 Download track Download Number of intervals 33,023 bp covered 24,189,270 Output type accessible chromatin region Genome build hg38 cell type Memory natural killer cell Biosample type Not applicable Biosamples term id CL:0000623 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,135,469 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0357_accessible_chromatin_regions_hg38.bed.gz Processed file md5 01e5816417d934b93457c478197930eb wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0357_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0357_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0357.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0357.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 2a125f2effa2c8f3b8b35e1b9d0e1399 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0357;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_NK;Cancer_Type=Normal;Region_Number=33116;Length=24254.873 kb;GEO_SRA=SRR7650913;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory natural killer cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2DDK3RMHW Download track View in genome browser ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2DDK3RMHW Data Source ATACdb_v1.03 Download track Download Number of intervals 24,337 bp covered 14,524,559 Output type accessible chromatin region Genome build hg38 cell type Neuron Biosample type Induced pluripotent stem cell line Biosamples term id CL:0000540 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 805,585 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0077_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e641151b9a82e7445a68d53f0863c169 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0077_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0077_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0077.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0077.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 616d9c705522d234a87a2e83c72581d1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0077;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Forebrain;Biosample_Name=Forebrain neurons;Cancer_Type=Normal;Region_Number=24415;Length=14567.424 kb;GEO_SRA=SRR5417041;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https: system category Nervous life stage Unknown trackName ATACdb_v1.03 Neuron ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2DNPQWSZQ Download track View in genome browser ATACdb_v1.03 YB5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2DNPQWSZQ Data Source ATACdb_v1.03 Download track Download Number of intervals 6,526 bp covered 2,511,757 Output type accessible chromatin region Genome build hg38 cell type YB5 Biosample type Cell line Biosamples term id Not available Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 202,920 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0154_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e4e8dfc79f2c81a7c764c15f8169ee04 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0154_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0154_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0154.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0154.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 37037614a1de1d0af2a101e5757d8b94 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0154;Biosample_Type=Cell Line;Tissue_Type=Colon;Biosample_Name=YB5;Cancer_Type=Colon cancer;Region_Number=6534;Length=2512.174 kb;GEO_SRA=SRR7060330;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Digestive life stage Unknown trackName ATACdb_v1.03 YB5 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2DOT6JKKZ Download track View in genome browser ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2DOT6JKKZ Data Source ATACdb_v1.03 Download track Download Number of intervals 16,330 bp covered 218,987 Output type transcription factor binding sites Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 536,335 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1333_hg38_motif_binding_sites.bed.gz Processed file md5 af48ea2868f7e20c62f18f3a4b09e4d3 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1333_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1333_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1333;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=6240;Length=1974.897 kb;GEO_SRA=SRR8571956;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwang system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2EGP5H7QY Download track View in genome browser ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2EGP5H7QY Data Source ATACdb_v1.03 Download track Download Number of intervals 10,721 bp covered 5,369,199 Output type accessible chromatin region Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 351,684 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1443_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c2f73122f48a9a63a2edde6c84d90bc4 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1443_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1443_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1443.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1443.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 18ff7833f3bbea89898a9b5f736f47e5 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1443;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Other;Region_Number=10764;Length=5368.509 kb;GEO_SRA=SRR8255926;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2EPK4S57L Download track View in genome browser ATACdb_v1.03 Neutrophil ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2EPK4S57L Data Source ATACdb_v1.03 Download track Download Number of intervals 10,598 bp covered 138,733 Output type transcription factor binding sites Genome build hg38 cell type Neutrophil Biosample type Not applicable Biosamples term id CL:0000775 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 313,951 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1471_hg38_motif_binding_sites.bed.gz Processed file md5 7b5f2e69f2827dfa9161fdee8a7c660f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1471_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1471_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1471;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Neutrophile;Cancer_Type=Other;Region_Number=2297;Length=767.416 kb;GEO_SRA=SRR4269922;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Neutrophil ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2F2QPNZNA Download track View in genome browser ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2F2QPNZNA Data Source ATACdb_v1.03 Download track Download Number of intervals 88,466 bp covered 1,170,428 Output type transcription factor binding sites Genome build hg38 cell type Temporal cortex Biosample type Not applicable Biosamples term id UBERON:0016538 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,786,514 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0456_hg38_motif_binding_sites.bed.gz Processed file md5 86d4c9d0e85faab09a7c1aaecd5db928 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0456_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0456_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0456;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=15519;Length=9746.074 kb;GEO_SRA=SRR5367717;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Temporal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2F4J4HSQ2 Download track View in genome browser ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2F4J4HSQ2 Data Source ATACdb_v1.03 Download track Download Number of intervals 5,413 bp covered 72,157 Output type transcription factor binding sites Genome build hg38 cell type CD45RA+ CCR7+ CD8 T cell Biosample type Primary cell Biosamples term id CL:0000900 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 158,299 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0824_hg38_motif_binding_sites.bed.gz Processed file md5 78852a90a5822abb917400a8a88e5599 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0824_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0824_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0824;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=YF;Cancer_Type=The Yellow fever;Region_Number=981;Length=396.776 kb;GEO_SRA=SRR5839476;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD45RA+ CCR7+ CD8 T cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2F62RNZ2I Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2F62RNZ2I Data Source ATACdb_v1.03 Download track Download Number of intervals 9,555 bp covered 4,040,483 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 306,881 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1318_accessible_chromatin_regions_hg38.bed.gz Processed file md5 11a817fc9775274736efb3565108747b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1318_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1318_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1318.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1318.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 38cf33849968fb30e2bad3f8a4a2bfdf Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1318;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=9567;Length=4044.547 kb;GEO_SRA=SRR891276;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2H6VAHALN Download track View in genome browser ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2H6VAHALN Data Source ATACdb_v1.03 Download track Download Number of intervals 139,679 bp covered 1,885,621 Output type transcription factor binding sites Genome build hg38 cell type Fibroblast Biosample type Not applicable Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,998,498 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1479_hg38_motif_binding_sites.bed.gz Processed file md5 22c1c86386cc86dfa362397bf405ba87 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1479_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1479_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1479;Biosample_Type=Other;Tissue_Type=Epithelial;Biosample_Name=CEC;Cancer_Type=Other;Region_Number=48405;Length=23951.873 kb;GEO_SRA=SRR1982094;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Integumentary life stage Unknown trackName ATACdb_v1.03 Fibroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2I4NHWVUK Download track View in genome browser ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2I4NHWVUK Data Source ATACdb_v1.03 Download track Download Number of intervals 10,774 bp covered 5,494,484 Output type accessible chromatin region Genome build hg38 cell type Temporal cortex Biosample type Not applicable Biosamples term id UBERON:0016538 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 352,678 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0496_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c403b98800400b76401d0b78050ebd5b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0496_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0496_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0496.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0496.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 957987fff5de94a79f563c2ce3c2bc15 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0496;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=10776;Length=5495.911 kb;GEO_SRA=SRR5367765;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2IWZSL3JA Download track View in genome browser ATACdb_v1.03 Cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2IWZSL3JA Data Source ATACdb_v1.03 Download track Download Number of intervals 61,064 bp covered 26,696,210 Output type accessible chromatin region Genome build hg38 cell type Cortex Biosample type Stem cell Biosamples term id UBERON:0001851 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,949,251 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0972_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a3cb4561c55a4be814f8a16a4b9f7b6c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0972_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0972_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0972.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0972.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 677eae3bb74d3187d03e29b21790236a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0972;Biosample_Type=Stem Cell;Tissue_Type=Cortex;Biosample_Name=Cortex;Cancer_Type=Normal;Region_Number=61112;Length=26723.36 kb;GEO_SRA=SRR5453681;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Nervous life stage Unknown trackName ATACdb_v1.03 Cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2JUV6FKF2 Download track View in genome browser ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2JUV6FKF2 Data Source ATACdb_v1.03 Download track Download Number of intervals 10,815 bp covered 3,227,660 Output type accessible chromatin region Genome build hg38 cell type EBV-transformed lymphocytes Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0022546 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 335,946 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0758_accessible_chromatin_regions_hg38.bed.gz Processed file md5 f754b24f31f82dda5fbaf326ea4d6fe2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0758_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0758_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0758.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0758.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 bfaa07b0e6844630fa7d062854ca9018 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0758;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=10829;Length=3232.927 kb;GEO_SRA=SRR6412836;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.or system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2K2J7HWC5 Download track View in genome browser ATACdb_v1.03 Erythroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2K2J7HWC5 Data Source ATACdb_v1.03 Download track Download Number of intervals 161,037 bp covered 2,168,340 Output type transcription factor binding sites Genome build hg38 cell type Erythroblast Biosample type Primary cell Biosamples term id CL:0000765 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,208,978 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1356_hg38_motif_binding_sites.bed.gz Processed file md5 36e296f90d40837546da6791ab1615bd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1356_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1356_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1356;Biosample_Type=Primary Cell;Tissue_Type=Peripheral blood;Biosample_Name=Erythroblasts;Cancer_Type=Normal;Region_Number=29023;Length=20391.267 kb;GEO_SRA=SRR6811667;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Erythroblast ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2KIMCTS3O Download track View in genome browser ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2KIMCTS3O Data Source ATACdb_v1.03 Download track Download Number of intervals 86,612 bp covered 1,181,811 Output type transcription factor binding sites Genome build hg38 cell type EBV-transformed lymphocytes Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0022546 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,105,960 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0752_hg38_motif_binding_sites.bed.gz Processed file md5 f459b5b08f43045374b3f7cb64a31d64 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0752_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0752_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0752;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Blood;Biosample_Name=LCL;Cancer_Type=Other;Region_Number=30400;Length=11352.568 kb;GEO_SRA=SRR6412830;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.o system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 EBV-transformed lymphocytes ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2KKBR2F4J Download track View in genome browser ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2KKBR2F4J Data Source ATACdb_v1.03 Download track Download Number of intervals 15,510 bp covered 9,740,287 Output type accessible chromatin region Genome build hg38 cell type Temporal cortex Biosample type Not applicable Biosamples term id UBERON:0016538 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 519,136 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0456_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ddad1c1aa04833a1a4913a97ee1ed64f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0456_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0456_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0456.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0456.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 905b452673ad65119c9ed5e1909bf4f2 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0456;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=posterior superior temporal cortex;Cancer_Type=Other;Region_Number=15519;Length=9746.074 kb;GEO_SRA=SRR5367717;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Nervous life stage Unknown trackName ATACdb_v1.03 Temporal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2MRWGYBN2 Download track View in genome browser ATACdb_v1.03 DP3- B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2MRWGYBN2 Data Source ATACdb_v1.03 Download track Download Number of intervals 31,934 bp covered 14,130,333 Output type accessible chromatin region Genome build hg38 cell type DP3- B cell Biosample type Not applicable Biosamples term id CL:0000236 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,003,776 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0035_accessible_chromatin_regions_hg38.bed.gz Processed file md5 a27af86cb9ef54c4568f72e59da3fb43 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0035_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0035_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0035.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0035.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 0f2b8a6917c4cf6ff364f1bbe7410289 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0035;Biosample_Type=Other;Tissue_Type=Other;Biosample_Name=DP3 minus sorted B cell;Cancer_Type=Normal;Region_Number=32052;Length=14090.492 kb;GEO_SRA=SRR8361363;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 DP3- B cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2NF2VHVMJ Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB2NF2VHVMJ Data Source ATACdb_v1.03 Download track Download Number of intervals 58,626 bp covered 786,759 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,881,036 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1393_hg38_motif_binding_sites.bed.gz Processed file md5 9fdb5b61d6a73df6faf6a9bc224a2c0c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1393_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1393_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1393;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=17905;Length=6013.455 kb;GEO_SRA=SRR7182996;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowle system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB2ONFED4NL Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2ONFED4NL Data Source ATACdb_v1.03 Download track Download Number of intervals 45,153 bp covered 23,257,480 Output type accessible chromatin region Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,464,212 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0812_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ac8853aed017c220ee5fb44445bb4911 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0812_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0812_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0812.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0812.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 9f4309401c9f08807af532ffb5cb26f0 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0812;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA18519;Cancer_Type=Other;Region_Number=45202;Length=23286.887 kb;GEO_SRA=SRR6412455;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2OR5GFPPP Download track View in genome browser ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2OR5GFPPP Data Source ATACdb_v1.03 Download track Download Number of intervals 49,448 bp covered 655,410 Output type transcription factor binding sites Genome build hg38 cell type Primary motor cortex Biosample type Not applicable Biosamples term id UBERON:0001384 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,607,398 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0523_hg38_motif_binding_sites.bed.gz Processed file md5 977f65f853d2ec18e817d5a92da27f6a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0523_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0523_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0523;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary motor cortex;Cancer_Type=Other;Region_Number=13808;Length=4803.423 kb;GEO_SRA=SRR5367807;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary motor cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2PCHFURPG Download track View in genome browser ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2PCHFURPG Data Source ATACdb_v1.03 Download track Download Number of intervals 165,854 bp covered 2,240,165 Output type transcription factor binding sites Genome build hg38 cell type Peripheral mononucleated cell Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,297,457 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1440_hg38_motif_binding_sites.bed.gz Processed file md5 a15c8e7da67a571a3bad9d87b119f758 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1440_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1440_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1440;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=26557;Length=19529.192 kb;GEO_SRA=SRR5785412;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2PGBVRSRH Download track View in genome browser ATACdb_v1.03 T47D ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2PGBVRSRH Data Source ATACdb_v1.03 Download track Download Number of intervals 177,659 bp covered 2,384,698 Output type transcription factor binding sites Genome build hg38 cell type T47D Biosample type Cell line Biosamples term id EFO:0001247 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,706,612 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0866_hg38_motif_binding_sites.bed.gz Processed file md5 07fef0ab06ca267d3c4749fa35b31d9c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0866_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0866_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0866;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=T47D;Cancer_Type=Breast cancer;Region_Number=33320;Length=22041.015 kb;GEO_SRA=SRR5631445;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Reproductive life stage Unknown trackName ATACdb_v1.03 T47D ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2PRXGJD4S Download track View in genome browser ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2PRXGJD4S Data Source ATACdb_v1.03 Download track Download Number of intervals 58,058 bp covered 29,125,939 Output type accessible chromatin region Genome build hg38 cell type FL3 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,861,473 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1138_accessible_chromatin_regions_hg38.bed.gz Processed file md5 1a74ccacc4f60db761e3722ca21bda87 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1138_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1138_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1138.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1138.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 f7768a9005a4c227057da7b83691c00b Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1138;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=58141;Length=29184.603 kb;GEO_SRA=SRR3066439;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Integumentary life stage Unknown trackName ATACdb_v1.03 FL3 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2QA3EEECF Download track View in genome browser ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2QA3EEECF Data Source ATACdb_v1.03 Download track Download Number of intervals 13,675 bp covered 184,242 Output type transcription factor binding sites Genome build hg38 cell type U2OS Biosample type Cell line Biosamples term id EFO:0002869 Tissue category Bone ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 495,256 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0389_hg38_motif_binding_sites.bed.gz Processed file md5 d5c7dabe46da31d9ed4b9d37823f8a62 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0389_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0389_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0389;Biosample_Type=Cell Line;Tissue_Type=Bone;Biosample_Name=U2OS;Cancer_Type=Osteosarcoma;Region_Number=6960;Length=1787.774 kb;GEO_SRA=SRR7699134;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Skeletal life stage Unknown trackName ATACdb_v1.03 U2OS ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2QCTX2IUJ Download track View in genome browser ATACdb_v1.03 Naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2QCTX2IUJ Data Source ATACdb_v1.03 Download track Download Number of intervals 16,485 bp covered 7,292,532 Output type accessible chromatin region Genome build hg38 cell type Naive T cell Biosample type Primary cell Biosamples term id CL:0000898 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 553,298 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0906_accessible_chromatin_regions_hg38.bed.gz Processed file md5 153a11f62ac5cfbaf67caea210f2edb5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0906_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0906_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0906.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0906.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a5561614fae377dadfc7b34febb00024 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0906;Biosample_Type=Primary Cell;Tissue_Type=Other;Biosample_Name=Naive T-cell;Cancer_Type=Other;Region_Number=16527;Length=7309.738 kb;GEO_SRA=SRR5831516;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2 system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Naive T cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2QEP65VGN Download track View in genome browser ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2QEP65VGN Data Source ATACdb_v1.03 Download track Download Number of intervals 24,951 bp covered 15,994,181 Output type accessible chromatin region Genome build hg38 cell type GM12878 Biosample type Cell line Biosamples term id EFO:0002784 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 842,931 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1306_accessible_chromatin_regions_hg38.bed.gz Processed file md5 651d3f2d06b13811576270eae3a1bf11 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1306_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1306_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1306.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1306.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 d7b0655c0e4e20eef6d253813e344cbd Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1306;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=GM12878;Cancer_Type=Normal;Region_Number=24997;Length=16029.085 kb;GEO_SRA=SRR1822166;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2RU6HA3FR Download track View in genome browser ATACdb_v1.03 T47D ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2RU6HA3FR Data Source ATACdb_v1.03 Download track Download Number of intervals 5,049 bp covered 2,004,740 Output type accessible chromatin region Genome build hg38 cell type T47D Biosample type Cell line Biosamples term id EFO:0001247 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 161,721 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0407_accessible_chromatin_regions_hg38.bed.gz Processed file md5 e24422a89c937acae5caae3193fc5db2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0407_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0407_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0407.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0407.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 7c3177d402ef40ff637efeef54ba468e Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0407;Biosample_Type=Cell Line;Tissue_Type=Mammary Gland;Biosample_Name=T47D;Cancer_Type=Breast cancer;Region_Number=5086;Length=1996.235 kb;GEO_SRA=SRR6300360;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FI system category Reproductive life stage Unknown trackName ATACdb_v1.03 T47D ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2S3OD4MUG Download track View in genome browser ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2S3OD4MUG Data Source ATACdb_v1.03 Download track Download Number of intervals 76,202 bp covered 1,010,948 Output type transcription factor binding sites Genome build hg38 cell type Primary visual cortex Biosample type Not applicable Biosamples term id UBERON:0002436 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,473,057 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0525_hg38_motif_binding_sites.bed.gz Processed file md5 d0e56103e11322a1304bd2393e22f80c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0525_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0525_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0525;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary visual cortex;Cancer_Type=Other;Region_Number=19920;Length=7450.344 kb;GEO_SRA=SRR5367809;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary visual cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2SIKANAGP Download track View in genome browser ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2SIKANAGP Data Source ATACdb_v1.03 Download track Download Number of intervals 166,641 bp covered 2,268,376 Output type transcription factor binding sites Genome build hg38 cell type Adipose Biosample type Tissue Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 6,134,210 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0393_hg38_motif_binding_sites.bed.gz Processed file md5 3d2212f34f0c49943480ad57b2ee6b20 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0393_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0393_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0393;Biosample_Type=Tissue;Tissue_Type=Adipose;Biosample_Name=Adipose;Cancer_Type=Normal;Region_Number=76441;Length=25939.998 kb;GEO_SRA=SRR7690514;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 Adipose ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2SULEJVJZ Download track View in genome browser ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2SULEJVJZ Data Source ATACdb_v1.03 Download track Download Number of intervals 216,165 bp covered 2,932,876 Output type transcription factor binding sites Genome build hg38 cell type HCASMC Biosample type Tissue Biosamples term id CL:0002592 Tissue category Blood Vessel ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,333,958 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1323_hg38_motif_binding_sites.bed.gz Processed file md5 e48b3c5b0f442b272a0b7ea69e0a5e98 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1323_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1323_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1323;Biosample_Type=Tissue;Tissue_Type=Blood;Biosample_Name=HCASMC;Cancer_Type=Coronary artery disease;Region_Number=48254;Length=33708.718 kb;GEO_SRA=SRR8216256;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HCASMC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2TDVPIVRT Download track View in genome browser ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2TDVPIVRT Data Source ATACdb_v1.03 Download track Download Number of intervals 108,140 bp covered 1,459,774 Output type transcription factor binding sites Genome build hg38 cell type HFF Biosample type Cell line Biosamples term id CL:1001608 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,953,426 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0671_hg38_motif_binding_sites.bed.gz Processed file md5 4ba3292555f0cde78e4bdfac75dbe0d0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0671_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0671_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0671;Biosample_Type=Cell Line;Tissue_Type=Foreskin;Biosample_Name=HFF;Cancer_Type=Normal;Region_Number=43426;Length=18458.629 kb;GEO_SRA=SRR5856835;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 HFF ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2TIQB2XSY Download track View in genome browser ATACdb_v1.03 T-helper 2 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2TIQB2XSY Data Source ATACdb_v1.03 Download track Download Number of intervals 164,134 bp covered 2,213,170 Output type transcription factor binding sites Genome build hg38 cell type T-helper 2 cell Biosample type Not applicable Biosamples term id CL:0000546 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,422,646 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0349_hg38_motif_binding_sites.bed.gz Processed file md5 80b7d2458fd36e996d7452b92776179b wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0349_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0349_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0349;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Th2;Cancer_Type=Normal;Region_Number=42441;Length=21231.354 kb;GEO_SRA=SRR7650881;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgeme system category Lymphatic life stage Unknown trackName ATACdb_v1.03 T-helper 2 cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2TNORPKVX Download track View in genome browser ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2TNORPKVX Data Source ATACdb_v1.03 Download track Download Number of intervals 13,161 bp covered 5,548,268 Output type accessible chromatin region Genome build hg38 cell type Macrophage Biosample type Not applicable Biosamples term id CL:0000235 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 433,592 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1064_accessible_chromatin_regions_hg38.bed.gz Processed file md5 02090d19d784f6bf9073d1b0a9921983 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1064_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1064_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1064.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1064.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a3842fe1ebcf803e4c7ef4dba73a511f Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1064;Biosample_Type=Other;Tissue_Type=Myeloid;Biosample_Name=Macrophage;Cancer_Type=Other;Region_Number=13186;Length=5562.512 kb;GEO_SRA=SRR3213969;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Macrophage ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2UCENV3SS Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB2UCENV3SS Data Source ATACdb_v1.03 Download track Download Number of intervals 57,108 bp covered 760,862 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Stem cell Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,871,359 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0601_hg38_motif_binding_sites.bed.gz Processed file md5 bfa4bff264ef63258ef21eb96b54d380 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0601_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0601_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0601;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=13574;Length=6589.183 kb;GEO_SRA=GSM2706223;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB2UUCJBWFP Download track View in genome browser ATACdb_v1.03 GM12878 and HL-60 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2UUCJBWFP Data Source ATACdb_v1.03 Download track Download Number of intervals 45,444 bp covered 29,406,017 Output type accessible chromatin region Genome build hg38 cell type GM12878 and HL-60 Biosample type Cell line Biosamples term id Not available Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,498,903 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1305_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7c19c42763263085caa29d39360a4000 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1305_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1305_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1305.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1305.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 b2f8f6248c66d7383236f0c679615b81 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1305;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=Mixture of GM12878 and HL-60;Cancer_Type=Normal;Region_Number=45501;Length=26991.902 kb;GEO_SRA=SRR1947696;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab. system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 GM12878 and HL-60 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2UWZM5P2H Download track View in genome browser ATACdb_v1.03 CD34+ HSPC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2UWZM5P2H Data Source ATACdb_v1.03 Download track Download Number of intervals 14,258 bp covered 191,419 Output type transcription factor binding sites Genome build hg38 cell type CD34+ HSPC Biosample type Primary cell Biosamples term id CL:0000037 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 399,189 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1241_hg38_motif_binding_sites.bed.gz Processed file md5 8e065d212430d6b3d22c4cc225bddff6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1241_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1241_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1241;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD34+ HSPC;Cancer_Type=Normal;Region_Number=3527;Length=2027.877 kb;GEO_SRA=SRR2453165;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD34+ HSPC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2VCIKKYT7 Download track View in genome browser ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2VCIKKYT7 Data Source ATACdb_v1.03 Download track Download Number of intervals 64,711 bp covered 40,375,246 Output type accessible chromatin region Genome build hg38 cell type Prefrontal cortex Biosample type Tissue Biosamples term id UBERON:0000451 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,071,036 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0039_accessible_chromatin_regions_hg38.bed.gz Processed file md5 eb7ceaccfecbf91ebbc4caa39555f4f1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0039_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0039_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0039.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0039.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 a0dd6ea6aac266e2cc2806424d9b5d1c Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0039;Biosample_Type=Tissue;Tissue_Type=Brain;Biosample_Name=prefrontal cortex;Cancer_Type=Normal;Region_Number=64855;Length=40459.391 kb;GEO_SRA=SRR5343855;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER system category Nervous life stage Unknown trackName ATACdb_v1.03 Prefrontal cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2VIYOK3SS Download track View in genome browser ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2VIYOK3SS Data Source ATACdb_v1.03 Download track Download Number of intervals 92,641 bp covered 1,257,927 Output type transcription factor binding sites Genome build hg38 cell type Frontal cortex Biosample type Tissue Biosamples term id UBERON:0001870 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 3,316,799 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1336_hg38_motif_binding_sites.bed.gz Processed file md5 112891940aefcae8294008511ca44c16 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1336_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1336_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1336;Biosample_Type=Tissue;Tissue_Type=Frontal;Biosample_Name=Frontal cortex;Cancer_Type=Frontotemporal degeneration;Region_Number=44173;Length=16833.184 kb;GEO_SRA=SRR8571959;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwa system category Nervous life stage Unknown trackName ATACdb_v1.03 Frontal cortex ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2VOI7C76N Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2VOI7C76N Data Source ATACdb_v1.03 Download track Download Number of intervals 27,832 bp covered 367,470 Output type transcription factor binding sites Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 873,340 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1257_hg38_motif_binding_sites.bed.gz Processed file md5 86dcc6e6ad49a4ee950f202605403af5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1257_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1257_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1257;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=6133;Length=2226.593 kb;GEO_SRA=SRR1556336;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB2VRQZDDBE Download track View in genome browser ATACdb_v1.03 CEM/C1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB2VRQZDDBE Data Source ATACdb_v1.03 Download track Download Number of intervals 5,928 bp covered 84,819 Output type transcription factor binding sites Genome build hg38 cell type CEM/C1 Biosample type Cell line Biosamples term id EFO:0001667 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 180,845 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1096_hg38_motif_binding_sites.bed.gz Processed file md5 ef77b208116ea90c6b76cbaacbf61721 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1096_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1096_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1096;Biosample_Type=Cell Line;Tissue_Type=Blood;Biosample_Name=CEM;Cancer_Type=Leukemia;Region_Number=3577;Length=1649.758 kb;GEO_SRA=SRR5123141;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CEM/C1 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]