NGABCTJQ76YRCZ Download track View in genome browser Nasser_2021_ABC_enhancer_gene Adipose ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCTJQ76YRCZ Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 63,800 bp covered 28,164,296 Output type enhancer-gene interactions Genome build hg38 cell type Adipose Biosample type In vitro differentiated cells Biosamples term id NCIT:C12472 Tissue category Adipose ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,221,905 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_white_adipose-Loft2014_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 abced225a5fc5c77bc7324875c3f6aba wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_white_adipose-Loft2014_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contac tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_white_adipose-Loft2014_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Co Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/white_adipose-Loft2014_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/white_adipose-Loft2014_EnhancerPredictionsFull.txt.lift Raw file md5 4dbd3349f9682d81db13163514cc29b3 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=white_adipose-Loft2014;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Loft2014;biosample_type_note=needs revising;source_pubmed=25504365;source_doi=https://doi.org/10.1101/ system category Integumentary life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Adipose ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCTRIWGMO3E Download track View in genome browser Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCTRIWGMO3E Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 58,044 bp covered 18,208,014 Output type enhancer-gene interactions Genome build hg38 cell type THP-1 Biosample type Cell line Biosamples term id EFO:0001253 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,834,607 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_120h_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 3a17282f6af1db4d421eb14f135f521d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_120h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_120h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_120h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_120h_EnhancerPredictionsFull.txt.lifted.b Raw file md5 ed65769b5c102dcc6f95bb5a10e4f1e6 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=THP_pmaLPS_ATAC_120h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1038 system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUCUIPKHGN Download track View in genome browser Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUCUIPKHGN Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 58,628 bp covered 18,728,561 Output type enhancer-gene interactions Genome build hg38 cell type CD14+ monocyte Biosample type Cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,986,984 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 ad099647dc66636ba8cee0b3f6a489e7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nas tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d6-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_RPMI_d6-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocy Raw file md5 8bf128e7f1a85c409abc0fbceeed322c Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=CD14-positive_monocyte_treated_with_RPMI_d6-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=27863248;sour system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUDCPWCP5E Download track View in genome browser Nasser_2021_ABC_enhancer_gene LNCAP ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUDCPWCP5E Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 56,650 bp covered 25,723,285 Output type enhancer-gene interactions Genome build hg38 cell type LNCAP Biosample type Cell line Biosamples term id EFO:0002071 Tissue category Male Reproductive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,715,048 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LNCAP_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 cded4f33044598873024d21970f237f6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LNCAP_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus1 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LNCAP_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4p Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/LNCAP_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/LNCAP_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 d738225bb4018ed209d7c2ead6e05b93 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=LNCAP;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=LNCAP;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=LN system category Reproductive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene LNCAP ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUEM4PYGBC Download track View in genome browser Nasser_2021_ABC_enhancer_gene OCI-LY7 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUEM4PYGBC Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 65,308 bp covered 47,950,047 Output type enhancer-gene interactions Genome build hg38 cell type OCI-LY7 Biosample type Cell line Biosamples term id EFO:0006711 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,364,023 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_OCI-LY7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 2d848f8904e345fda30a676d6a436d16 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_OCI-LY7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_OCI-LY7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/OCI-LY7-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/OCI-LY7-ENCODE_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 d651142e43db80263251d9f946372b70 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=OCI-LY7-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_cell system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene OCI-LY7 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUESM2ZC2S Download track View in genome browser Nasser_2021_ABC_enhancer_gene Epithelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUESM2ZC2S Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 59,028 bp covered 29,774,513 Output type enhancer-gene interactions Genome build hg38 cell type Epithelial cell Biosample type Primary cell Biosamples term id CL:0000066 Tissue category Breast ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,989,246 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_mammary_epithelial_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 2e93d407db8624cabf9ad6fe34c67864 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_mammary_epithelial_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity- tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_mammary_epithelial_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/mammary_epithelial_cell-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/mammary_epithelial_cell-Roadmap_EnhancerPredic Raw file md5 d4babea13fecd2aff2684664610a9ca7 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=mammary_epithelial_cell-Roadmap;tissue_of_origin=Mammary;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=h system category Reproductive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Epithelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUKJZTCDAC Download track View in genome browser Nasser_2021_ABC_enhancer_gene Jurkat ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUKJZTCDAC Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 59,476 bp covered 17,375,565 Output type enhancer-gene interactions Genome build hg38 cell type Jurkat Biosample type Immortalized cell line Biosamples term id EFO:0002796 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,963,732 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat_anti-CD3_PMA_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 ab96c05143ab2c0ad4c2e2207e7c57cf wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat_anti-CD3_PMA_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Jurkat_anti-CD3_PMA_4hr-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Jurkat_anti-CD3_PMA_4hr-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Jurkat_anti-CD3_PMA_4hr-Engreitz_EnhancerPred Raw file md5 d347c68e03b2d361f9633e41b15ae323 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=Jurkat_anti-CD3_PMA_4hr-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.or system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Jurkat ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUOXNGSGQ3 Download track View in genome browser Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUOXNGSGQ3 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 62,170 bp covered 17,395,882 Output type enhancer-gene interactions Genome build hg38 cell type THP-1 Biosample type Cell line Biosamples term id EFO:0001253 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,116,263 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_6h_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 5a2177e07a32e2610cf3105f3423c9a2 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_6h_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP_pmaLPS_ATAC_6h_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contac Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_6h_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP_pmaLPS_ATAC_6h_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 be378dbc6ce87233bff95a73bfde415e Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=THP_pmaLPS_ATAC_6h;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Nasser_2021;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCUVDXXY5AI Download track View in genome browser Nasser_2021_ABC_enhancer_gene Myoblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCUVDXXY5AI Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 54,294 bp covered 25,504,950 Output type enhancer-gene interactions Genome build hg38 cell type Myoblast Biosample type Primary cell Biosamples term id CL:0000056 Tissue category Skeletal Muscle ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,644,696 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 3c256d613fee6dfca4a6441c2658bd5e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/skeletal_muscle_myoblast-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/skeletal_muscle_myoblast-Roadmap_EnhancerPred Raw file md5 861613d69cc703ffadbf5a5b490f19d2 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=skeletal_muscle_myoblast-Roadmap;tissue_of_origin=Skeletal muscle;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;sou system category Muscular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Myoblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCV652AMX4Y Download track View in genome browser Nasser_2021_ABC_enhancer_gene LoVo ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCV652AMX4Y Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 64,292 bp covered 41,019,989 Output type enhancer-gene interactions Genome build hg38 cell type LoVo Biosample type Cell line Biosamples term id EFO:0006639 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,275,621 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LoVo_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 e3ab30c950fdfc751d04997eab263e76 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LoVo_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_LoVo_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/LoVo_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/LoVo_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 3905071ee35bf3091a6de998c235d9c0 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=LoVo;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=LoVo;biosample_type_note=needs revising;source_pubmed=28195176;source_doi=10.1038/ncomms14418;abc_celltype_id=LoVo;data_ system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene LoVo ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCV6UCGIMI5 Download track View in genome browser Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCV6UCGIMI5 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 65,156 bp covered 30,293,165 Output type enhancer-gene interactions Genome build hg38 cell type CD14+ monocyte Biosample type Primary cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,372,746 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocytes-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 0b7066f03e9e08bd16362accc74da7ee wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocytes-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity- tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocytes-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocytes-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocytes-Roadmap_EnhancerPredic Raw file md5 94affcb564b98920f500ec21f34ea8bc Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=CD14-positive_monocytes-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/na system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCVAF7JK2IJ Download track View in genome browser Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCVAF7JK2IJ Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 63,818 bp covered 24,961,206 Output type enhancer-gene interactions Genome build hg38 cell type Dendritic cell Biosample type In vitro differentiated cells Biosamples term id CL:0000451 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,403,023 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_30_minute-Garber2017_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 11de1615ec87f1b6872e25a6365abc45 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_30_minute-Garber2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotati tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_30_minute-Garber2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Anno Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_30_minute-Garber2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lif Raw file md5 2943fef45592c8bd029a4407559af349 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_30_minute-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=needs revis system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCVFMGGFFWO Download track View in genome browser Nasser_2021_ABC_enhancer_gene Keratinocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCVFMGGFFWO Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 62,498 bp covered 30,678,776 Output type enhancer-gene interactions Genome build hg38 cell type Keratinocyte Biosample type Primary cell Biosamples term id CL:0000312 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,177,716 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_keratinocyte-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 d1907dee1ae3b1029db0c098b7b5ae58 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_keratinocyte-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_keratinocyte-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/keratinocyte-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/keratinocyte-Roadmap_EnhancerPredictionsFull.txt.lifted.b Raw file md5 7827cec6ff75fbf03ea38a014f9f8a5d Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=keratinocyte-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;a system category Integumentary life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Keratinocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCVGEOICLYF Download track View in genome browser Nasser_2021_ABC_enhancer_gene Induced pluripotent stem cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCVGEOICLYF Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 54,856 bp covered 32,068,913 Output type enhancer-gene interactions Genome build hg38 cell type Induced pluripotent stem cell Biosample type Induced pluripotent stem cell line Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,762,624 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_induced_pluripotent_stem_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 b367503cf02152ec4d73fc5047f9da0a wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_induced_pluripotent_stem_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_induced_pluripotent_stem_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/induced_pluripotent_stem_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/induced_pluripotent_stem_cell-ENCODE_Enha Raw file md5 a63ce7bf01deeedb4e43e6bb57db4015 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=induced_pluripotent_stem_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.103 system category Stem Cell life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Induced pluripotent stem cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCVKJRRU55J Download track View in genome browser Nasser_2021_ABC_enhancer_gene Hepatocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCVKJRRU55J Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 70,320 bp covered 35,039,957 Output type enhancer-gene interactions Genome build hg38 cell type Hepatocyte Biosample type In vitro differentiated cells Biosamples term id CL:0000182 Tissue category Liver ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,581,285 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_hepatocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 fea9ad8b4761fc51731da8846647c29e wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_hepatocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_hepatocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/hepatocyte-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/hepatocyte-ENCODE_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 0de2224ce0ca96df075a1da8d35ddd57 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=hepatocyte-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_c system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Hepatocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCVN6FNLJEF Download track View in genome browser Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCVN6FNLJEF Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 65,450 bp covered 33,930,197 Output type enhancer-gene interactions Genome build hg38 cell type CD14+ monocyte Biosample type Primary cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,413,342 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 8914a11e5d27e27d209e62311de7cdd1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activit Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-ENCODE_EnhancerPrediction Raw file md5 d31a84dc63dd7ea2935e5938e15470f9 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=CD14-positive_monocyte-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/natur system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCWDDJFQNZQ Download track View in genome browser Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCWDDJFQNZQ Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 54,226 bp covered 24,595,000 Output type enhancer-gene interactions Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,612,730 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_lung-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 50fd523511b604a18718f480846f1f69 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_lung-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Co tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_lung-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-b Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_lung-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_lung-Roadmap_EnhancerPredictionsFull. Raw file md5 501256628e6a9fec8a69659628af4292 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=fibroblast_of_lung-Roadmap;tissue_of_origin=Lung;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://d system category Respiratory life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCWQEQTU2YY Download track View in genome browser Nasser_2021_ABC_enhancer_gene Bipolar neuron ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCWQEQTU2YY Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 56,434 bp covered 42,103,506 Output type enhancer-gene interactions Genome build hg38 cell type Bipolar neuron Biosample type In vitro differentiated cells Biosamples term id CL:0000103 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,828,218 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_bipolar_neuron_from_iPSC-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 1b337bf221868cbee07b53ee332f8253 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_bipolar_neuron_from_iPSC-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity- tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_bipolar_neuron_from_iPSC-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/bipolar_neuron_from_iPSC-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/bipolar_neuron_from_iPSC-ENCODE_EnhancerPredic Raw file md5 145102b8cf800da03b24ed257ccbd2c9 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=bipolar_neuron_from_iPSC-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nat system category Nervous life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Bipolar neuron ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCWUIMMHGT5 Download track View in genome browser Nasser_2021_ABC_enhancer_gene K562 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCWUIMMHGT5 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 68,062 bp covered 30,284,705 Output type enhancer-gene interactions Genome build hg38 cell type K562 Biosample type Primary cell Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,408,310 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_K562-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 430dfab69738b075560920432441abd6 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_K562-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/be tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_K562-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/K562-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/K562-Roadmap_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 153ff1c8746f80e01c13a7e5d2124ac6 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=K562-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_cellt system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene K562 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCWZL7L5QCA Download track View in genome browser Nasser_2021_ABC_enhancer_gene Mesendoderm ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCWZL7L5QCA Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 61,014 bp covered 35,368,231 Output type enhancer-gene interactions Genome build hg38 cell type Mesendoderm Biosample type Primary cell Biosamples term id BTO:0003953 Tissue category Embryo ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,163,654 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 a5673f59190613ef61123cd61f96c807 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_202 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_BMP4_Derived_Mesendoderm Raw file md5 f5e6ea59a3e2d41d858bf0e61d8064d7 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https:/ system category Embryo life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Mesendoderm ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCXDY5GK2RZ Download track View in genome browser Nasser_2021_ABC_enhancer_gene B cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCXDY5GK2RZ Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 66,626 bp covered 36,829,465 Output type enhancer-gene interactions Genome build hg38 cell type B cell Biosample type Primary cell Biosamples term id CL:0000236 Tissue category Immune ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,463,323 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 05f69ae89ce3e2e3593393630f21432f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_B_cell-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/B_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/B_cell-ENCODE_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 1b24e86bebfac397e05c90c5851c3db0 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=B_cell-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_cellt system category Lymphatic life stage Unknown trackName Nasser_2021_ABC_enhancer_gene B cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCXH374X43F Download track View in genome browser Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCXH374X43F Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 65,414 bp covered 32,920,756 Output type enhancer-gene interactions Genome build hg38 cell type Pancreas Biosample type Primary tissue Biosamples term id UBERON:0001264 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,387,886 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 79e7bacf848b57f030338e2e859ac685 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_pancreas-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/pancreas-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/pancreas-Roadmap_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 67a468f880e7c6cc055ef99c9ff263be Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=pancreas-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_c system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Pancreas ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCXUDPJANS5 Download track View in genome browser Nasser_2021_ABC_enhancer_gene HT-29 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCXUDPJANS5 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 61,834 bp covered 35,202,818 Output type enhancer-gene interactions Genome build hg38 cell type HT-29 Biosample type Cell line Biosamples term id EFO:0001193 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,072,301 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 7089328fcdeab58ae1a35f6274116c38 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HT29_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HT29_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HT29_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 64cd2174c743d835e66a2a39759a06e7 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=HT29;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HT29;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247;abc_celltype_id=HT29 system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene HT-29 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCYIXCDBGKK Download track View in genome browser Nasser_2021_ABC_enhancer_gene HAP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCYIXCDBGKK Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 57,860 bp covered 32,230,495 Output type enhancer-gene interactions Genome build hg38 cell type HAP-1 Biosample type Cell line Biosamples term id EFO:0007598 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,764,421 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 54329f0c6df24d4723d3e2514ca3d6b0 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HAP1_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4pl Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HAP1_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HAP1_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 b9b4e0c3c3177c747d5c8cd7e4dd15b3 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=HAP1;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=HAP1;biosample_type_note=done;source_pubmed=30153076;source_doi=10.1080/15548627.2018.1509608;abc_celltype_id=HAP1;data_ system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene HAP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCYSRQF7QYY Download track View in genome browser Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCYSRQF7QYY Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 60,694 bp covered 38,541,975 Output type enhancer-gene interactions Genome build hg38 cell type Fibroblast Biosample type Primary cell Biosamples term id CL:0000057 Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,096,307 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 6f56f1061e0922a6f3e998cdc286762f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Cont tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_fibroblast_of_arm-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by- Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_arm-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/fibroblast_of_arm-ENCODE_EnhancerPredictionsFull.txt. Raw file md5 5e040c954cb191c90402f9d81aaac2ed Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=fibroblast_of_arm-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature1124 system category Integumentary life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Fibroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZ2EGLRUBC Download track View in genome browser Nasser_2021_ABC_enhancer_gene Transverse colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZ2EGLRUBC Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 64,608 bp covered 22,511,704 Output type enhancer-gene interactions Genome build hg38 cell type Transverse colon Biosample type Tissue Biosamples term id UBERON:0001157 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,353,532 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 79e3073cdd233e06a0e45ad217b7a1d5 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Conta tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_transverse_colon-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-C Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/transverse_colon-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/transverse_colon-ENCODE_EnhancerPredictionsFull.txt.li Raw file md5 5bc109b9c531b95104e97264c748f4e6 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=transverse_colon-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11247 system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Transverse colon ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZ3J5N4F45 Download track View in genome browser Nasser_2021_ABC_enhancer_gene BJAB ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZ3J5N4F45 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 52,824 bp covered 15,608,487 Output type enhancer-gene interactions Genome build hg38 cell type BJAB Biosample type Cell line Biosamples term id EFO:0002815 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 3,494,792 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 d7219d774b0d2928b90887d9445349ba wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_BJAB-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/BJAB-Engreitz_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 30910f4dd63025e6788cf39af27b6635 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=BJAB-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=done;source_pubmed=33828297;source_doi=https://doi.org/10.1038/s41586-021-03446-x; system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene BJAB ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZB5SENA7O Download track View in genome browser Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZB5SENA7O Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 64,898 bp covered 21,166,014 Output type enhancer-gene interactions Genome build hg38 cell type CD14+ monocyte Biosample type Cell Biosamples term id CL:0001054 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,394,499 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 8bea5a3eed818e9a8ef9e0e345e57929 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Acti tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte-Novakovic2016_Enha Raw file md5 bc941e551f7cc2cbc4eb11445871eb02 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=CD14-positive_monocyte-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=needs revising;source_pubmed=27863248;source_doi=10.1 system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZBXBS4F6D Download track View in genome browser Nasser_2021_ABC_enhancer_gene Mobilized CD34+ ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZBXBS4F6D Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 64,592 bp covered 31,820,372 Output type enhancer-gene interactions Genome build hg38 cell type Mobilized CD34+ Biosample type Primary cell Biosamples term id CL:0000037 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,359,728 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 ee8760183785c1748b162f1897635ddf wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity- tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activ Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD34-positive_mobilized-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD34-positive_mobilized-Roadmap_EnhancerPredic Raw file md5 a9bdf4e054f67efba642381f12b20d03 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=CD34-positive_mobilized-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/na system category Cardiovascular life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Mobilized CD34+ ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZCVR5UGM7 Download track View in genome browser Nasser_2021_ABC_enhancer_gene HepG2 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZCVR5UGM7 Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 64,298 bp covered 31,429,138 Output type enhancer-gene interactions Genome build hg38 cell type HepG2 Biosample type Primary cell Biosamples term id EFO:0001187 Tissue category Liver ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,225,131 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 60aa682450f794e6c04700309c0542e1 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/b tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_HepG2-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mod Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HepG2-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/HepG2-Roadmap_EnhancerPredictionsFull.txt.lifted.bed Raw file md5 5e500b96847dfda6f237203c6cea0cf3 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=HepG2-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248;abc_cell system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene HepG2 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGABCZOZH45RQW Download track View in genome browser Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Show metadata Identifier NGABCZOZH45RQW Data Source Nasser_2021_ABC_enhancer_gene Download track Download Number of intervals 63,202 bp covered 43,055,675 Output type enhancer-gene interactions Genome build hg38 cell type Stomach Biosample type Primary tissue Biosamples term id UBERON:0000945 Tissue category Digestive ENCODE Experiment id Not applicable Biological replicate(s) Not reported Technical replicate Not applicable Antibody Not applicable Assay ABC_[Activity-by-Contact_model] File format bed bed4+19 interact File size 4,279,903 Downloaded date 05/21/2021 Release date 03/07/2021 Date added to FILER 12/05/2025 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz Processed file md5 ca5f3335059b5dc0bddbd94e7383a681 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Con Link out URL https://www.engreitzlab.org/resources Raw File URL Not applicable Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted Raw file md5 ee411c64b1f6f8898e3a97fc32b62886 Data Category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions Track Description Original_cell_type=stomach_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature14248; system category Digestive life stage Unknown trackName Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
NGADB222ATNT7H Download track View in genome browser ATACdb_v1.03 WT-hiPSC 1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB222ATNT7H Data Source ATACdb_v1.03 Download track Download Number of intervals 26,679 bp covered 9,269,951 Output type accessible chromatin region Genome build hg38 cell type WT-hiPSC 1 Biosample type Induced pluripotent stem cell line Biosamples term id CL:0002248 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 828,363 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz Processed file md5 32da70be6fa252a2a94c485caf92c5df wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0135_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0135.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0135.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 180c2b46a8b0009b5da510fcfaa9c30d Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0135;Biosample_Type=Induced pluripotent stem cell line;Tissue_Type=Neuron;Biosample_Name=WT hiPSC#1;Cancer_Type=Branchio-Oculo-Facial Syndrome (BOFS);Region_Number=26714;Length=9272.209 kb;GEO_SRA=SRR6418910;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_ack system category Nervous life stage Unknown trackName ATACdb_v1.03 WT-hiPSC 1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB22KCTLP4B Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB22KCTLP4B Data Source ATACdb_v1.03 Download track Download Number of intervals 222,374 bp covered 3,067,329 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Stem cell Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,063,959 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz Processed file md5 c74f11479affa68de6a9453ea1da3427 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0603_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0603;Biosample_Type=Stem Cell;Tissue_Type=Embryo;Biosample_Name=Embryo;Cancer_Type=Normal;Region_Number=43277;Length=26758.396 kb;GEO_SRA=GSM2706227;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackno system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB22VKNLQLP Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
Show metadata Identifier NGADB22VKNLQLP Data Source ATACdb_v1.03 Download track Download Number of intervals 19,856 bp covered 5,725,463 Output type accessible chromatin region Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 631,689 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz Processed file md5 3575064288e384514c3fabfa5660b1ae wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0656_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0656.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0656.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 16214906f39140f7babc4093825379e1 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0656;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=19894;Length=5741.08 kb;GEO_SRA=SRR5459171;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowled system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq accessible chromatin region (narrowPeak-lifted) [Life stage: Embryonic] [Accessible chromatin]
NGADB22WL2CAWH Download track View in genome browser ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB22WL2CAWH Data Source ATACdb_v1.03 Download track Download Number of intervals 24,455 bp covered 18,115,422 Output type accessible chromatin region Genome build hg38 cell type Peripheral mononucleated cell Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 842,566 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz Processed file md5 c864ae1f35cb3682c441f139d9c16f11 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1437_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1437.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1437.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 587f59d9e6b6ebc046b340b68fd7e933 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1437;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=24502;Length=18139.485 kb;GEO_SRA=SRR5785404;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB23364DAST Download track View in genome browser ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
Show metadata Identifier NGADB23364DAST Data Source ATACdb_v1.03 Download track Download Number of intervals 124,375 bp covered 1,661,514 Output type transcription factor binding sites Genome build hg38 cell type hESC Biosample type Cell line Biosamples term id CL:0002322 Tissue category Stem Cell ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 4,149,946 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz Processed file md5 59a9dddaf6337b269d602e88d0bc763d wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0655_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0655;Biosample_Type=Cell Line;Tissue_Type=Embryo;Biosample_Name=HESC;Cancer_Type=Normal;Region_Number=36226;Length=12689.173 kb;GEO_SRA=SRR5459170;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Stem Cell life stage Embryonic trackName ATACdb_v1.03 hESC ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [Life stage: Embryonic] [TFBS]
NGADB233LQ6XZJ Download track View in genome browser ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB233LQ6XZJ Data Source ATACdb_v1.03 Download track Download Number of intervals 61,554 bp covered 800,781 Output type transcription factor binding sites Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,757,686 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz Processed file md5 e92391370f2fb998dd2df0a3d3c514fd wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1029_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1029;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=9019;Length=3710.573 kb;GEO_SRA=SRR5128066;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB236EPBKFD Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB236EPBKFD Data Source ATACdb_v1.03 Download track Download Number of intervals 212,246 bp covered 2,869,946 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 7,058,086 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz Processed file md5 a64c813cae08155e08110811cd51ed79 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0787_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0787;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19160;Cancer_Type=Other;Region_Number=52136;Length=31626.445 kb;GEO_SRA=SRR6412421;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB23KDTPD4M Download track View in genome browser ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB23KDTPD4M Data Source ATACdb_v1.03 Download track Download Number of intervals 332,984 bp covered 4,587,018 Output type transcription factor binding sites Genome build hg38 cell type Induced pluripotent stem cell Biosample type Stem cell Biosamples term id EFO:0004905 Tissue category iPSC ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 12,794,731 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz Processed file md5 4bcfecb08e57a863022751372220cf3f wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0773_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0773;Biosample_Type=Stem Cell;Tissue_Type=iPSC;Biosample_Name=iPSC-NA19108;Cancer_Type=Other;Region_Number=138149;Length=88629.544 kb;GEO_SRA=SRR6412491;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/a system category Stem Cell life stage Unknown trackName ATACdb_v1.03 Induced pluripotent stem cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB23V3DGCBI Download track View in genome browser ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB23V3DGCBI Data Source ATACdb_v1.03 Download track Download Number of intervals 42,390 bp covered 551,802 Output type transcription factor binding sites Genome build hg38 cell type K562 Biosample type Cell line Biosamples term id EFO:0002067 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,207,140 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz Processed file md5 0c06e343a35686480c634ae569c8d698 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1033_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1033;Biosample_Type=Cell Line;Tissue_Type=Bone marrow;Biosample_Name=K-562;Cancer_Type=Erythroleukemic;Region_Number=6686;Length=2614.247 kb;GEO_SRA=SRR5128070;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/F system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 K562 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB24A6WMWA6 Download track View in genome browser ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB24A6WMWA6 Data Source ATACdb_v1.03 Download track Download Number of intervals 5,388 bp covered 1,881,327 Output type accessible chromatin region Genome build hg38 cell type CD4+ Biosample type Primary cell Biosamples term id CL:0000492 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 173,027 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1267_accessible_chromatin_regions_hg38.bed.gz Processed file md5 cf423500890b0295556fd5a7dbafb18c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1267_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1267_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1267.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1267.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 098d89dc52bce9adbbd452e5c1d0530a Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1267;Biosample_Type=Primary Cell;Tissue_Type=Blood;Biosample_Name=CD4+ T cell;Cancer_Type=Normal;Region_Number=5404;Length=1863.462 kb;GEO_SRA=SRR1556346;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 CD4+ ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB24K4MPW4Y Download track View in genome browser ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB24K4MPW4Y Data Source ATACdb_v1.03 Download track Download Number of intervals 66,996 bp covered 881,114 Output type transcription factor binding sites Genome build hg38 cell type WM989 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 2,092,359 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1052_hg38_motif_binding_sites.bed.gz Processed file md5 d2da86192de19eb1921f80a5e6f06369 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1052_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1052_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1052;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=WM989;Cancer_Type=Melanoma;Region_Number=17075;Length=5693.218 kb;GEO_SRA=SRR5444784;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknow system category Integumentary life stage Unknown trackName ATACdb_v1.03 WM989 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB24USHNJ6T Download track View in genome browser ATACdb_v1.03 Hippocampus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB24USHNJ6T Data Source ATACdb_v1.03 Download track Download Number of intervals 26,465 bp covered 9,908,768 Output type accessible chromatin region Genome build hg38 cell type Hippocampus Biosample type Not applicable Biosamples term id NCIT:C12444 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 822,038 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0478_accessible_chromatin_regions_hg38.bed.gz Processed file md5 7bf87b54485edd46cecb91a4e97126e9 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0478_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0478_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0478.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0478.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 57e8794a067c503da664c02c410f4807 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0478;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=hippocampus;Cancer_Type=Other;Region_Number=26481;Length=9915.483 kb;GEO_SRA=SRR5367745;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Nervous life stage Unknown trackName ATACdb_v1.03 Hippocampus ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB255P5YLXX Download track View in genome browser ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB255P5YLXX Data Source ATACdb_v1.03 Download track Download Number of intervals 41,420 bp covered 25,304,076 Output type accessible chromatin region Genome build hg38 cell type Memory Tregs Biosample type Not applicable Biosamples term id CL:0002678 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 1,397,728 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0264_accessible_chromatin_regions_hg38.bed.gz Processed file md5 5777d9b835f08600a73ac925b5f974a7 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0264_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0264_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0264.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0264.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 ce6d7977e80aacb81ef998b1a1f58468 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0264;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Memory_Tregs;Cancer_Type=Normal;Region_Number=41499;Length=25330.286 kb;GEO_SRA=SRR7650795;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Memory Tregs ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB25D7SSLR3 Download track View in genome browser ATACdb_v1.03 T regulatory cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB25D7SSLR3 Data Source ATACdb_v1.03 Download track Download Number of intervals 187,586 bp covered 2,534,027 Output type transcription factor binding sites Genome build hg38 cell type T regulatory cell Biosample type Not applicable Biosamples term id CL:0000815 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 5,940,494 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0225_hg38_motif_binding_sites.bed.gz Processed file md5 89945270a5f032f3fe5999201590f675 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0225_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0225_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0225;Biosample_Type=Other;Tissue_Type=Blood;Biosample_Name=Regulatory_T;Cancer_Type=Normal;Region_Number=30536;Length=23469.623 kb;GEO_SRA=SRR7650755;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 T regulatory cell ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB25IJXPOJH Download track View in genome browser ATACdb_v1.03 HAP-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB25IJXPOJH Data Source ATACdb_v1.03 Download track Download Number of intervals 14,605 bp covered 5,552,737 Output type accessible chromatin region Genome build hg38 cell type HAP-1 Biosample type Cell line Biosamples term id EFO:0007598 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 452,667 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0417_accessible_chromatin_regions_hg38.bed.gz Processed file md5 75896ea8a546eb76d1c00c9fedf3c102 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0417_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0417_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0417.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0417.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 2df896dab3264accd1742d73c04c5686 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0417;Biosample_Type=Cell Line;Tissue_Type=Other;Biosample_Name=HAP1;Cancer_Type=Leukemia;Region_Number=14665;Length=5599.925 kb;GEO_SRA=SRR6766915;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowl system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 HAP-1 ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB25XMI3M2B Download track View in genome browser ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB25XMI3M2B Data Source ATACdb_v1.03 Download track Download Number of intervals 24,952 bp covered 14,694,977 Output type accessible chromatin region Genome build hg38 cell type Peripheral mononucleated cell Biosample type Cell line Biosamples term id CL:2000001 Tissue category Blood ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 850,239 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1433_accessible_chromatin_regions_hg38.bed.gz Processed file md5 ba88e99a79090d703b6ac6cd0141bf73 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1433_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_1433_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_1433.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_1433.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 506569fe43a3fc2d282a4eefa57a7ee9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_1433;Biosample_Type=Cell Line;Tissue_Type=Peripheral blood;Biosample_Name=JHU-06;Cancer_Type=Leukemia;Region_Number=25013;Length=14743.432 kb;GEO_SRA=SRR5785394;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/ system category Cardiovascular life stage Unknown trackName ATACdb_v1.03 Peripheral mononucleated cell ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB2677KI55G Download track View in genome browser ATACdb_v1.03 Primary motor cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
Show metadata Identifier NGADB2677KI55G Data Source ATACdb_v1.03 Download track Download Number of intervals 65,354 bp covered 28,102,662 Output type accessible chromatin region Genome build hg38 cell type Primary motor cortex Biosample type Not applicable Biosamples term id UBERON:0001384 Tissue category Brain ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed narrowPeak-lifted File size 2,090,740 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0504_accessible_chromatin_regions_hg38.bed.gz Processed file md5 5be14b9dcfc298b419e9fe2fdf876e15 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0504_accessible_chromatin_regions_hg38.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/Sample_0504_accessible_chromatin_regions_hg38.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Accessible-chromatin-region/bed13/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/download_car_bed/Sample_0504.bed Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/Sample_0504.bed -P FILER2/Annotationtracks/Downloads/ATACdb/Accessible_chromatin_regions/ Raw file md5 78bb6fd7f17b4a254bdadbc9fabcaad9 Data Category Accessible chromatin Genomic feature type ATAC-seq accessible chromatin region Track Description Sample_ID=Sample_0504;Biosample_Type=Other;Tissue_Type=Brain;Biosample_Name=primary motor cortex;Cancer_Type=Other;Region_Number=65374;Length=28109.977 kb;GEO_SRA=SRR5367774;schema=BED3+10;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILE system category Nervous life stage Unknown trackName ATACdb_v1.03 Primary motor cortex ATAC-seq accessible chromatin region (narrowPeak-lifted) [Accessible chromatin]
NGADB26U7AJUSW Download track View in genome browser ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB26U7AJUSW Data Source ATACdb_v1.03 Download track Download Number of intervals 248,074 bp covered 3,409,847 Output type transcription factor binding sites Genome build hg38 cell type FL3 Biosample type Cell line Biosamples term id Not available Tissue category Skin ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 9,447,936 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1157_hg38_motif_binding_sites.bed.gz Processed file md5 5efc7828651d200353511f08dcaa3182 wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1157_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_1157_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_1157;Biosample_Type=Cell Line;Tissue_Type=Fibroblast;Biosample_Name=FL3;Cancer_Type=Other;Region_Number=109618;Length=53591.903 kb;GEO_SRA=SRR3066459;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ackn system category Integumentary life stage Unknown trackName ATACdb_v1.03 FL3 ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
NGADB26XSYHRLM Download track View in genome browser ATACdb_v1.03 Epithelium ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]
Show metadata Identifier NGADB26XSYHRLM Data Source ATACdb_v1.03 Download track Download Number of intervals 44,800 bp covered 594,666 Output type transcription factor binding sites Genome build hg38 cell type Epithelium Biosample type Primary cell Biosamples term id NCIT:C12710 Tissue category Lung ENCODE Experiment id Not applicable Biological replicate(s) Not applicable Technical replicate Not applicable Antibody Not applicable Assay ATAC-seq File format bed bed3+11 ATACdb-lifted File size 1,531,930 Downloaded date 10/03/2023 Release date 10/18/2021 Date added to FILER 12/01/2023 Processed File Download URL https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0863_hg38_motif_binding_sites.bed.gz Processed file md5 635b80de070172b53fb2794ca9da4d1c wget command wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0863_hg38_motif_binding_sites.bed.gz -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ tabix_index Download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/Sample_0863_hg38_motif_binding_sites.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/ATACdb/ATAC-seq/Motif-overlap/bed14/hg38/ Link out URL https://bio.liclab.net/ATACdb/ Raw File URL https://bio.liclab.net/ATACdb/download/packages/Motif_scan_package.txt Raw file download wget https://tf.lisanwanglab.org/GADB/FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/Motif_scan_package.txt -P FILER2/Annotationtracks/Downloads/ATACdb/motif_scan/ Raw file md5 b279988d9f061984cc7e422702286f7d Data Category TFBS [Transcription Factor Binding Site] Genomic feature type ATAC-seq transcription factor binding sites Track Description Sample_ID=Sample_0863;Biosample_Type=Primary Cell;Tissue_Type=Bronchial;Biosample_Name=AAEC;Cancer_Type=Normal;Region_Number=14463;Length=5547.495 kb;GEO_SRA=SRR6290080;schema=BED3+11;dataSource_pubmed_id=33125076;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/ac system category Respiratory life stage Unknown trackName ATACdb_v1.03 Epithelium ATAC-seq transcription factor binding sites (bed3+11 ATACdb-lifted) [TFBS]