| bed bed_dREG |
bed3+3 |
chrom;chromStart;chromEnd;dREg-score;dREG-p_value;center |
6 |
hg38 |
bed_bed_dREG.as |
| bed bed3 |
bed3 |
chrom;chromStart;chromEnd |
3 |
hg19, hg38 |
bed_bed3.as |
| bed bed3+5 FactorbookPeaks |
bed3+5 |
chrom;chromStart;chromEnd;TF;expNum;expScore;cell-type;canonical-TF-term |
8 |
hg19 |
bed_bed3+5_FactorbookPeaks.as |
| bed bed4 |
bed4 |
chrom;chromStart;chromEnd;name |
4 |
hg19, hg38 |
bed_bed4.as |
| bed bed4+2 DASHR2 |
bed4+2 |
chrom;chromStart;chromEnd;name;type;strand |
6 |
hg19, hg38 |
bed_bed4+2_DASHR2.as |
| bed bed5 |
bed5 |
chrom;chromStart;chromEnd;name;score |
5 |
hg19, hg38 |
bed_bed5.as |
| bed bed5 ENCODE |
bed4+1 |
chrom;chromStart;chromEnd;name;FDR-footprints |
5 |
hg38 |
bed_bed5_ENCODE.as |
| bed bed4+19 interact |
bed4+19 |
anchorChrom;anchorStart;anchorEnd;anchorName;interactionAttr;chrom;chromStart;chromEnd;name;score;value;exp;color;sourceChrom;sourceStart;sourceEnd;sourceName;sourceStrand;targetChrom;targetStart;targetEnd;targetName;targetStrand |
23 |
hg19, hg38, hg38-lifted |
bed_bed4+19_interact.as |
| bed bed5+30 GWAS-catalog |
bed5+30 |
chrom;chromStart;chromEnd;SNPS;P-VALUE;REGION;REPORTED_GENE(S);MAPPED_GENE;UPSTREAM_GENE_ID;DOWNSTREAM_GENE_ID;SNP_GENE_IDS;UPSTREAM_GENE_DISTANCE;DOWNSTREAM_GENE_DISTANCE;STRONGEST_SNP-RISK_ALLELE;MERGED;SNP_ID_CURRENT;CONTEXT;INTERGENIC;RISK_ALLELE_FREQUENCY;PVALUE_MLOG;P-VALUE(TEXT);OR_or_BETA;95%-CI(TEXT);PLATFORM_[SNPS-PASSING-QC];CNV;DATE_ADDED_TO_CATALOG;PUBMEDID;FIRST_AUTHOR;DATE;JOURNAL;LINK;STUDY;DISEASE/TRAIT;INITIAL_SAMPLE_SIZE;REPLICATION_SAMPLE_SIZE |
35 |
hg38 |
bed_bed5+30_GWAS-catalog.as |
| bed bed6 |
bed6 |
chrom;chromStart;chromEnd;name;score;strand |
6 |
hg19, hg38 |
bed_bed6.as |
| bed bed6+11 FactorbookMotif |
bed6+11 |
chrom;chromStart;chromEnd;hocomoco_jaspar_TF_name;FB_score;strand;binding_sequence;FB_pwm_ID;FB_consensus_sequence;FB_ChIP-Seq_target;HOCOMOCO_pwm_ID;HOCOMOCO_Target_consensus;HOCOMOCO_q-value;JASPAR_pwm_ID;JASPAR_Target_consensus;JASPAR_q-value;ENCODE_exp_bigBed_bed_IDs |
17 |
hg38 |
bed_bed6+11_FactorbookMotif.as |
| bed bed6+14 qtl |
bed6+14 |
chrom;chromStart;chromEnd;variant_id;pval;target_strand;ref;alt;target_gene_symbol;target_ensembl_id;target;z_score_non_ref;beta_non_ref;beta_se_non_ref;FDR;non_ref_af;qtl_dist_to_target;QC_info;target_info;user_input |
20 |
hg19, hg38 |
bed_bed6+14_qtl.as |
| bed bed6+2 miRNA |
bed6+2 |
chrom;chromStart;chromEnd;name;score;strand;miRNAname;expressionValue |
8 |
hg38 |
bed_bed6+2_miRNA.as |
| bed bed6+3 FactorbookMotifs |
bed6+3 |
chrom;chromStart;chromEnd;motif_id;-log10(qvalue);strand;qvalue;binding_sequence;peak_region |
9 |
hg19 |
bed_bed6+3_FactorbookMotifs.as |
| bed bed6+5 ATACdb |
bed6+5 |
chrom;chromStart;chromEnd;name;score;strand;motif_id;pValue;qValue;binding_sequence;open_chromatin_region |
11 |
hg19 |
bed_bed6+5_ATACdb.as |
| bed bed6+5 Homer |
bed6+5 |
chrom;chromStart;chromEnd;name;score;strand;motifID;DNA_binding_domain;cell_type;binding_sequence;consensus_sequence |
11 |
hg19, hg38 |
bed_bed6+5_Homer.as |
| bed bed6+52 DASHR |
bed6+52 |
chrom;chromStart;chromEnd;peakID;peakScore;strand;peakExpressionValue;peakEntropy5pReadEnd;peakNormalizedEntropy5p;peakMaxEntropy5p;peakEntropy3pReadEnd;peakNormalizedEntropy3p;peakMaxEntropy3p;maxProb5p;maxProb3p;maxPos5p;maxPos3p;beforePeakReadCnt;peakFoldChange;peakRPM;peakExprPercentile;annotchrom;annotchromStart;annotchromEnd;rnaID;rnaClass;annotStrand;annotOverlap;peakOverlap;consMean0;consMin;consMax;genomicPartition_mRNA;overlapIds_mRNA;partitionchrom_mRNA;partitionStart_mRNA;partitionEnd_mRNA;partitionStrand_mRNA;partitionBpOverlap_mRNA;genomicPartition_lncRNA;overlapIds_lncRNA;partitionchrom_lncRNA;partitionStart_lncRNA;partitionEnd_lncRNA;partitionStrand_lncRNA;partitionBpOverlap_lncRNA;numRepeatOverlaps;repeat_family;repeat_id;repeatchrom;repeatStart;repeatEnd;repeatStrand;repeatBpOverlap;length;tissue;anchorID;tissueSpecificity |
58 |
hg19, hg38 |
bed_bed6+52_DASHR.as |
| bed bed6+8 TF_footprints |
bed6+8 |
chrom;chromStart;chromEnd;name;length;strand;footprintStart;footprintEnd;sampleID;method;provenance;footprintScore;motifScore;fimoPvalue |
14 |
hg38 |
bed_bed6+8_TF_footprints.as |
| bed bed9 |
bed9 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;itemRgb |
9 |
hg19, hg38 |
bed_bed9.as |
| bed bedExonScore |
bed6+3 |
chrom;chromStart;chromEnd;name;score;strand;signalValue;exonCount;constituitiveExons |
9 |
hg19 |
bed_bedExonScore.as |
| bed bedLogR |
bed9+1 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;reserved;logR |
10 |
hg19 |
bed_bedLogR.as |
| bed bedMethyl |
bed9+2 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;reserved;readCount;percentMeth |
11 |
hg19 |
bed_bedMethyl.as |
| bed bedRnaElements |
bed6+3 |
chrom;chromStart;chromEnd;name;score;strand;level;signif;score2 |
9 |
hg19 |
bed_bedRnaElements.as |
| bed broadPeak |
bed6+3 |
chrom;chromStart;chromEnd;name;score;strand;signalValue;pValue;qValue |
9 |
hg19, hg38 |
bed_broadPeak.as |
| bed idr_peak |
bed6+8 |
chrom;chromStart;chromEnd;name;score;strand;localIDR;globalIDR;rep1_chromStart;rep1_chromEnd;rep1_count;rep2_chromStart;rep2_chromEnd;rep2_count |
14 |
hg19, hg38 |
bed_idr_peak.as |
| bed narrowPeak |
bed6+4 |
chrom;chromStart;chromEnd;name;score;strand;signalValue;pValue;qValue;peak |
10 |
hg19, hg38 |
bed_narrowPeak.as |
| bed tss_peak |
bed6+5 |
chrom;chromStart;chromEnd;name;score;strand;count;gene_id;gene_name;tss_id;peak_cov |
11 |
hg19, hg38 |
bed_tss_peak.as |
| bed bed3+1 score |
bed3+1 |
chrom;chromStart;chromEnd;score |
4 |
hg19, hg38 |
bed_bed3+1_score.as |
| bed bed12 |
bed12 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;itemRgb;blockCount;blockSizes;blockStarts |
12 |
hg19, hg38 |
bed_bed12.as |
| bed bed6+5 VISTA_enhancer |
bed6+5 |
chrom;chromStart;chromEnd;name;score;strand;annotation;enhancer_sequence;reference_sequence;expressionPattern;Flanking_genes |
11 |
hg19 |
bed_bed6+5_VISTA_enhancer.as |
| bed bed3+2 telomere_gaps |
bed3+2 |
chrom;chromStart;chromEnd;size;type |
5 |
hg38 |
bed_bed3+2_telomere_gaps.as |
| bed bed3+4 CADDScore |
bed3+4 |
chrom;chromStart;chromEnd;ref;alt;rawScore;PHRED |
7 |
hg19, hg38 |
bed_bed3+4_CADDScore.as |
| bed bed4+3 variant |
bed4+3 |
chrom;chromStart;chromEnd;name;ref;alt;info |
7 |
hg19, hg38 |
bed_bed4+3_variant.as |
| bed bed3+6 gff |
bed3+6 |
chrom;chromStart;chromEnd;source;type;strand;score;phase;gft/gff_attributes |
9 |
hg19, hg38 |
bed_bed3+6_gff.as |
| bed bedPolyA |
bed4+7 |
chrom;chromStart;chromEnd;polyA-clusterID;averageExpression;strand;percent;sampleNumber;expression;abbrevation;polyA-signalSequence |
11 |
hg38 |
bed_bedPolyA.as |
| bed bed9+5 WGBS |
bed9+5 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;itemRgb;coverage;readPercent;referenceGenotype;sampleGenotype;QualityScore |
14 |
hg38 |
bed_bed9+5_WGBS.as |
| bed gappedPeak |
bed12+3 |
chrom;chromStart;chromEnd;name;score;strand;thickStart;thickEnd;itemRgb;blockCount;blockSizes;blockStarts;signalValue;pValue;qValue |
15 |
hg19 |
bed_gappedPeak.as |
| bed narrowPeak-lifted |
bed3+10 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19);name;score;strand;signalValue;pValue;qValue;peak |
13 |
hg38-lifted |
bed_narrowPeak_lifted.as |
| bed bed12-lifted |
bed3+12 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19);name;score;strand;thickStart;thickEnd;itemRgb;blockCount;blockSizes;blockStarts |
15 |
hg38-lifted |
bed_bed12_lifted.as |
| bed gappedPeak-lifted |
bed3+15 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19);name;score;strand;thickStart;thickEnd;itemRgb;blockCount;blockSizes;blockStarts;signalValue;pValue;qValue |
18 |
hg38-lifted |
bed_gappedPeak_lifted.as |
| bed broadPeak-lifted |
bed3+9 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19);name;score;strand;signalValue;pValue;qValue |
12 |
hg38-lifted |
bed_broadPeak_lifted.as |
| bed bed3+11 ATACdb-lifted |
bed3+11 |
chrom;chromStart;chromEnd;chrom_hg19;chromStart_hg19;chromEnd_hg19;name;score;strand;motif_id;pValue;qValue;binding_sequence;open_chromatin_region_hg38 |
14 |
hg38-lifted |
bed_bed3+11_ATACdb_lifted.as |
| bed bed6-lifted |
bed3+6 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19);name;score;strand |
9 |
hg38-lifted |
bed_bed6_lifted.as |
| bed bed3-lifted |
bed3+3 |
chrom(hg38);chromStart(hg38);chromEnd(hg38);chrom(hg19);chromStart(hg19);chromEnd(hg19) |
6 |
hg38-lifted |
bed_bed3_lifted.as |