README file for the hg38_lifted_RoadMap_ChIP-seq_gappedpeak_hg38 dataset

I. Description of the dataset
--------------------------------

Data source: ROADMAP-lifted

Genome build: hg38-lifted

Contents: ChIP-seq H3K27me3 peaks;ChIP-seq H3K36me3 peaks;ChIP-seq H3K4me1 peaks;ChIP-seq H3K4me3 peaks;ChIP-seq H3K9ac peaks;ChIP-seq H3K9me3 peaks;ChIP-seq H3K27ac peaks;ChIP-seq peaks;ChIP-seq H2AK5ac peaks;ChIP-seq H2BK120ac peaks;ChIP-seq H2BK12ac peaks;ChIP-seq H2BK15ac peaks;ChIP-seq H2BK20ac peaks;ChIP-seq H2BK5ac peaks;ChIP-seq H3K14ac peaks;ChIP-seq H3K18ac peaks;ChIP-seq H3K23ac peaks;ChIP-seq H3K23me2 peaks;ChIP-seq H3K4ac peaks;ChIP-seq H3K4me2 peaks;ChIP-seq H3K56ac peaks;ChIP-seq H3K79me1 peaks;ChIP-seq H3K79me2 peaks;ChIP-seq H4K20me1 peaks;ChIP-seq H4K5ac peaks;ChIP-seq H4K8ac peaks;ChIP-seq H4K91ac peaks;ChIP-seq H4K12ac peaks;ChIP-seq H3T11ph peaks;ChIP-seq H2AK9ac peaks;ChIP-seq H3K9me1 peaks

Dataset URL: https://tf.lisanwanglab.org/GADB/Annotationtracks/hg38_lifted/RoadMap/ChIP-seq/gappedpeak/hg38/

Acknowledgements: 


II. Dataset version number
--------------------------------

v2_12_05_2024	


III. Files in the dataset
--------------------------------

MANIFEST


IV. Contributors
--------------------------------

Jeffrey Cifello <Jeffrey.Cifello@pennmedicine.upenn.edu>
Prabhakaran Gangadharan <pganga@pennmedicine.upenn.edu>
Luke Carter <Luke.Carter@pennmedicine.upenn.edu>
Pavel P. Kuksa <pkuksa@pennmedicine.upenn.edu>
Fanny Leung <yyee@pennmedicine.upenn.edu>


V. Workflow description
--------------------------------




VI. Input files and Resources
--------------------------------




VII. File Contents
--------------------------------

1. E.g.,  BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.gappedPeak.lifted.bed.gz



2. BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.gappedPeak.lifted.bed.gz.tbi

Annotation track has been tabix-indexed to alllow for efficient retrieval of annotations based on `chr` and `position`.