README file for the RoadMap_ChIP-seq_broadpeak_hg19 dataset

I. Description of the dataset
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Data source: ROADMAP

Genome build: hg19

Contents: ChIP-seq H3K27me3 peaks [broad peak];ChIP-seq H3K36me3 peaks [broad peak];ChIP-seq H3K4me1 peaks [broad peak];ChIP-seq H3K4me3 peaks [broad peak];ChIP-seq H3K9ac peaks [broad peak];ChIP-seq H3K9me3 peaks [broad peak];ChIP-seq H3K27ac peaks [broad peak];ChIP-seq peaks [broad peak];ChIP-seq H2AK5ac peaks [broad peak];ChIP-seq H2BK120ac peaks [broad peak];ChIP-seq H2BK12ac peaks [broad peak];ChIP-seq H2BK15ac peaks [broad peak];ChIP-seq H2BK20ac peaks [broad peak];ChIP-seq H2BK5ac peaks [broad peak];ChIP-seq H3K14ac peaks [broad peak];ChIP-seq H3K18ac peaks [broad peak];ChIP-seq H3K23ac peaks [broad peak];ChIP-seq H3K23me2 peaks [broad peak];ChIP-seq H3K4ac peaks [broad peak];ChIP-seq H3K4me2 peaks [broad peak];ChIP-seq H3K56ac peaks [broad peak];ChIP-seq H3K79me1 peaks [broad peak];ChIP-seq H3K79me2 peaks [broad peak];ChIP-seq H4K20me1 peaks [broad peak];ChIP-seq H4K5ac peaks [broad peak];ChIP-seq H4K8ac peaks [broad peak];ChIP-seq H4K91ac peaks [broad peak];ChIP-seq H4K12ac peaks [broad peak];ChIP-seq H3T11ph peaks [broad peak];ChIP-seq H2AK9ac peaks [broad peak];ChIP-seq H3K9me1 peaks [broad peak]

Dataset URL: https://tf.lisanwanglab.org/GADB/Annotationtracks/RoadMap/ChIP-seq/broadpeak/hg19/

Acknowledgements: 


II. Dataset version number
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v2_12_05_2024	


III. Files in the dataset
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MANIFEST


IV. Contributors
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Jeffrey Cifello <Jeffrey.Cifello@pennmedicine.upenn.edu>
Prabhakaran Gangadharan <pganga@pennmedicine.upenn.edu>
Luke Carter <Luke.Carter@pennmedicine.upenn.edu>
Pavel P. Kuksa <pkuksa@pennmedicine.upenn.edu>
Fanny Leung <yyee@pennmedicine.upenn.edu>


V. Workflow description
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VI. Input files and Resources
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VII. File Contents
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1. E.g.,  BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.broadPeak.bed.gz



2. BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.broadPeak.bed.gz.tbi

Annotation track has been tabix-indexed to alllow for efficient retrieval of annotations based on `chr` and `position`.