URL: 

UCSC: https://genome.ucsc.edu

Repeatmasker: http://www.repeatmasker.org/

Publications: 

UCSC: Lee BT, Barber GP, Benet-Pagès A, Casper J, Clawson H, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Muthuraman P, Nassar LR, Nguy B, Pereira T, Perez G, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Wick BD, Zweig AS, Haussler D, Kuhn RM, Haeussler M, Kent WJ. The UCSC Genome Browser database: 2022 update. Nucleic Acids Res. 2022 Jan 7;50(D1):D1115-D1122. doi: 10.1093/nar/gkab959. PMID: 34718705.

Repbase: Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110(1-4):462-7. doi: 10.1159/000084979. PMID: 16093699.

Funding/Acknowledgements:

UCSC: National Human Genome Research Institute [5U41HG002371 to G.P.B., A.B-P., J.C., H.C., C.F., J.N.G., M.H., A.S.H., W.J.K., R.M.K., B.T.L., C.M.L., L.R.N, G.P., B.J.R., K.R.R., D.S., M.L.S., B.D.W., A.S.Z., 5U41HG007234 to M.D., 5R01HG010329 to M.D., M.H.]; National Institutes of Health [5U01HG010971 to M.D.]; U.S. Department of Health and Human Services [1U41HG010972 to M.H.]; Howard Hughes Medical Institute [090100 to D.H.]; Silicon Valley Community Foundation [2017-171531(5022) to G.P.B., J.C., C.F., W.J.K., B.T.L., P.M., B.N., T.P., M.L.S., A.S.Z., COVID-19 Testing to H.C., M.H.]; Center for Information Technology Research in the Interest of Society [2020-0000000026 to A.S.H., L.R.N., B.J.R.]; University of California Office of the President Emergency COVID-19 Research Seed Funding [R00RG2456 to M.H., L.R.N.]; California Department of Public Health [20-11088 to M.H., A.S.H.]; California HIV/AIDS Research Program [R01RG3764 to M.H., L.R.N.]. Funding for open access charge: National Human Genome Research Institute [5U41HG002371].