README file for the ENCODE_Histone_ChIP-seq_narrowpeak_hg19 dataset I. Description of the dataset -------------------------------- Data source: ENCODE Genome build: hg19 Contents: Histone ChIP-seq H3K9me3 peaks [narrow peak];Histone ChIP-seq H3K27me3 peaks [narrow peak];Histone ChIP-seq H3K36me3 peaks [narrow peak];Histone ChIP-seq H3K4me2 peaks [narrow peak];Histone ChIP-seq H3K4me1 peaks [narrow peak];Histone ChIP-seq H3K4me3 peaks [narrow peak];Histone ChIP-seq H3K9ac stable peaks [narrow peak];Histone ChIP-seq H3K4me2 replicated peaks [narrow peak];Histone ChIP-seq H3K4me3 replicated peaks [narrow peak];Histone ChIP-seq H2AFZ replicated peaks [narrow peak];Histone ChIP-seq H4K20me1 peaks [narrow peak];Histone ChIP-seq H3K27me3 replicated peaks [narrow peak];Histone ChIP-seq H2AFZ peaks [narrow peak];Histone ChIP-seq H3K36me3 replicated peaks [narrow peak];Histone ChIP-seq H3K27ac peaks [narrow peak];Histone ChIP-seq H3K79me2 peaks [narrow peak];Histone ChIP-seq H3K9me3 replicated peaks [narrow peak];Histone ChIP-seq H3K27ac replicated peaks [narrow peak];Histone ChIP-seq H3K4me3 stable peaks [narrow peak];Histone ChIP-seq H3K9me2 replicated peaks [narrow peak];Histone ChIP-seq H3F3A peaks [narrow peak];Histone ChIP-seq H3K4me1 replicated peaks [narrow peak];Histone ChIP-seq H4K20me1 replicated peaks [narrow peak];Histone ChIP-seq H3K27me3 stable peaks [narrow peak];Histone ChIP-seq H3K79me2 replicated peaks [narrow peak];Histone ChIP-seq H3K4me1 stable peaks [narrow peak];Histone ChIP-seq H3K9ac peaks [narrow peak];Histone ChIP-seq H3K9me2 peaks [narrow peak];Histone ChIP-seq H3K36me3 stable peaks [narrow peak];Histone ChIP-seq H3K9me3 stable peaks [narrow peak];Histone ChIP-seq H3K27ac stable peaks [narrow peak];Histone ChIP-seq H3K9ac replicated peaks [narrow peak];Histone ChIP-seq H3F3A replicated peaks [narrow peak];Histone ChIP-seq H3K4me2 stable peaks [narrow peak];Histone ChIP-seq H3K9me1 stable peaks [narrow peak];Histone ChIP-seq H3F3A stable peaks [narrow peak];Histone ChIP-seq H3K79me2 stable peaks [narrow peak];Histone ChIP-seq H2AFZ stable peaks [narrow peak];Histone ChIP-seq H3K9me1 peaks [narrow peak];Histone ChIP-seq H3K18ac peaks [narrow peak];Histone ChIP-seq H3K4ac peaks [narrow peak];Histone ChIP-seq H3K79me1 peaks [narrow peak];Histone ChIP-seq H4K5ac peaks [narrow peak];Histone ChIP-seq H2AK5ac replicated peaks [narrow peak];Histone ChIP-seq H2BK5ac peaks [narrow peak];Histone ChIP-seq H2BK5ac replicated peaks [narrow peak];Histone ChIP-seq H2BK15ac peaks [narrow peak];Histone ChIP-seq H2BK15ac stable peaks [narrow peak];Histone ChIP-seq H2AK5ac peaks [narrow peak];Histone ChIP-seq H4K8ac peaks [narrow peak];Histone ChIP-seq H3K14ac peaks [narrow peak];Histone ChIP-seq H2BK120ac replicated peaks [narrow peak];Histone ChIP-seq H2BK120ac peaks [narrow peak];Histone ChIP-seq H4K91ac replicated peaks [narrow peak];Histone ChIP-seq H3K23ac peaks [narrow peak];Histone ChIP-seq H3K4ac replicated peaks [narrow peak];Histone ChIP-seq H4K5ac stable peaks [narrow peak];Histone ChIP-seq H4K8ac stable peaks [narrow peak];Histone ChIP-seq H4K5ac replicated peaks [narrow peak];Histone ChIP-seq H4K91ac peaks [narrow peak];Histone ChIP-seq H2BK12ac replicated peaks [narrow peak];Histone ChIP-seq H2BK12ac peaks [narrow peak];Histone ChIP-seq H3K18ac stable peaks [narrow peak];Histone ChIP-seq H3K14ac stable peaks [narrow peak];Histone ChIP-seq H2BK12ac stable peaks [narrow peak];Histone ChIP-seq H4K8ac replicated peaks [narrow peak];Histone ChIP-seq H2BK20ac peaks [narrow peak];Histone ChIP-seq H3K23me2 peaks [narrow peak];Histone ChIP-seq H2AK9ac peaks [narrow peak];Histone ChIP-seq H3K56ac replicated peaks [narrow peak];Histone ChIP-seq H3K79me1 replicated peaks [narrow peak];Histone ChIP-seq H3T11ph stable peaks [narrow peak];Histone ChIP-seq H3K14ac replicated peaks [narrow peak];Histone ChIP-seq H2BK5ac stable peaks [narrow peak];Histone ChIP-seq H3K23ac replicated peaks [narrow peak];Histone ChIP-seq H3K56ac peaks [narrow peak];Histone ChIP-seq H4K12ac peaks [narrow peak];Histone ChIP-seq H4K91ac stable peaks [narrow peak];Histone ChIP-seq H3K18ac replicated peaks [narrow peak];Histone ChIP-seq H2BK15ac replicated peaks [narrow peak];Histone ChIP-seq H2BK20ac replicated peaks [narrow peak];Histone ChIP-seq H2AK9ac replicated peaks [narrow peak];Histone ChIP-seq H3K23ac stable peaks [narrow peak];Histone ChIP-seq H2BK120ac stable peaks [narrow peak];Histone ChIP-seq H2BK20ac stable peaks [narrow peak];Histone ChIP-seq H4K20me1 stable peaks [narrow peak];Histone ChIP-seq H3K23me2 replicated peaks [narrow peak];Histone ChIP-seq H3K4ac stable peaks [narrow peak];Histone ChIP-seq H3T11ph peaks [narrow peak];Histone ChIP-seq H4K12ac replicated peaks [narrow peak];Histone ChIP-seq H3K9me1 replicated peaks [narrow peak];Histone ChIP-seq H3K79me1 stable peaks [narrow peak];Histone ChIP-seq H3K56ac stable peaks [narrow peak];Histone ChIP-seq H3K79me2 pseudoreplicated peaks [narrow peak];Histone ChIP-seq H3K36me3 pseudoreplicated peaks [narrow peak];Histone ChIP-seq H2AFZ pseudoreplicated peaks [narrow peak];Histone ChIP-seq H3K9me3 pseudoreplicated peaks [narrow peak];Histone ChIP-seq H3K27me3 pseudoreplicated peaks [narrow peak] Dataset URL: https://tf.lisanwanglab.org/GADB/Annotationtracks/ENCODE/data/Histone_ChIP-seq/narrowpeak/hg19/ Acknowledgements: II. Dataset version number -------------------------------- v2_12_05_2024 III. Files in the dataset -------------------------------- MANIFEST IV. Contributors -------------------------------- Jeffrey Cifello Prabhakaran Gangadharan Luke Carter Pavel P. Kuksa Fanny Leung V. Workflow description -------------------------------- VI. Input files and Resources -------------------------------- VII. File Contents -------------------------------- 1. E.g., ENCFF000VFD.bed.gz 2. ENCFF000VFD.bed.gz.tbi Annotation track has been tabix-indexed to alllow for efficient retrieval of annotations based on `chr` and `position`.