README file for the 1000genome_phase3_vcf_hg38 dataset I. Description of the dataset -------------------------------- Data source: 1k_genome_phase3 Genome build: hg38 Contents: Genotyping AFR INDEL;Genotyping AFR SNV;Genotyping AFR SV;Genotyping AFR ACB INDEL;Genotyping AFR ACB SNV;Genotyping AFR ACB SV;Genotyping AFR ASW INDEL;Genotyping AFR ASW SNV;Genotyping AFR ASW SV;Genotyping AFR ESN INDEL;Genotyping AFR ESN SNV;Genotyping AFR ESN SV;Genotyping AFR GWD INDEL;Genotyping AFR GWD SNV;Genotyping AFR GWD SV;Genotyping AFR LWK INDEL;Genotyping AFR LWK SNV;Genotyping AFR LWK SV;Genotyping AFR MSL INDEL;Genotyping AFR MSL SNV;Genotyping AFR MSL SV;Genotyping AFR YRI INDEL;Genotyping AFR YRI SNV;Genotyping AFR YRI SV;Genotyping AMR INDEL;Genotyping AMR SNV;Genotyping AMR SV;Genotyping AMR CLM INDEL;Genotyping AMR CLM SNV;Genotyping AMR CLM SV;Genotyping AMR MXL INDEL;Genotyping AMR MXL SNV;Genotyping AMR MXL SV;Genotyping AMR PEL INDEL;Genotyping AMR PEL SNV;Genotyping AMR PEL SV;Genotyping AMR PUR INDEL;Genotyping AMR PUR SNV;Genotyping AMR PUR SV;Genotyping EAS INDEL;Genotyping EAS SNV;Genotyping EAS SV;Genotyping EAS CDX INDEL;Genotyping EAS CDX SNV;Genotyping EAS CDX SV;Genotyping EAS CHB INDEL;Genotyping EAS CHB SNV;Genotyping EAS CHB SV;Genotyping EAS CHS INDEL;Genotyping EAS CHS SNV;Genotyping EAS CHS SV;Genotyping EAS JPT INDEL;Genotyping EAS JPT SNV;Genotyping EAS JPT SV;Genotyping EAS KHV INDEL;Genotyping EAS KHV SNV;Genotyping EAS KHV SV;Genotyping EUR INDEL;Genotyping EUR SNV;Genotyping EUR SV;Genotyping EUR CEU INDEL;Genotyping EUR CEU SNV;Genotyping EUR CEU SV;Genotyping EUR FIN INDEL;Genotyping EUR FIN SNV;Genotyping EUR FIN SV;Genotyping EUR GBR INDEL;Genotyping EUR GBR SNV;Genotyping EUR GBR SV;Genotyping EUR IBS INDEL;Genotyping EUR IBS SNV;Genotyping EUR IBS SV;Genotyping EUR TSI INDEL;Genotyping EUR TSI SNV;Genotyping EUR TSI SV;Genotyping SAS INDEL;Genotyping SAS SNV;Genotyping SAS SV;Genotyping SAS BEB INDEL;Genotyping SAS BEB SNV;Genotyping SAS BEB SV;Genotyping SAS GIH INDEL;Genotyping SAS GIH SNV;Genotyping SAS GIH SV;Genotyping SAS ITU INDEL;Genotyping SAS ITU SNV;Genotyping SAS ITU SV;Genotyping SAS PJL INDEL;Genotyping SAS PJL SNV;Genotyping SAS PJL SV;Genotyping SAS STU INDEL;Genotyping SAS STU SNV;Genotyping SAS STU SV Dataset URL: https://tf.lisanwanglab.org/GADB/Annotationtracks/1000genome_phase3/vcf/hg38/ Acknowledgements: II. Dataset version number -------------------------------- v2_12_05_2024 III. Files in the dataset -------------------------------- MANIFEST IV. Contributors -------------------------------- Jeffrey Cifello Prabhakaran Gangadharan Luke Carter Pavel P. Kuksa Fanny Leung V. Workflow description -------------------------------- VI. Input files and Resources -------------------------------- VII. File Contents -------------------------------- 1. E.g., chr1.AFR.INDEL.hg38.no-monomorphic.vcf.gz 2. chr1.AFR.INDEL.hg38.no-monomorphic.vcf.gz.tbi Annotation track has been tabix-indexed to alllow for efficient retrieval of annotations based on `chr` and `position`.