#file_name file_size variant_type num_variants num_subjects genome_build chr super_population population /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 846080 INDEL_multiallelic 7326 96 hg19 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 73905966 SNP_biallelic 1716934 96 hg19 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9879249 INDEL_biallelic 154842 96 hg19 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1511956 SNP_multiallelic 23327 96 hg19 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1298221 SNP_multiallelic 23327 61 hg19 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 52412151 SNP_biallelic 1249646 94 hg19 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 56662695 SNP_biallelic 1526808 61 hg19 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7952974 INDEL_biallelic 145279 61 hg19 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 708559 INDEL_multiallelic 7326 61 hg19 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 44117190 SNP_biallelic 1089396 86 hg19 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6730512 INDEL_biallelic 104781 86 hg19 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1301752 SNP_multiallelic 23327 86 hg19 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 748557 INDEL_multiallelic 7326 86 hg19 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 37008173 SNP_biallelic 890429 93 hg19 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6039893 INDEL_biallelic 90672 93 hg19 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1289515 SNP_multiallelic 23327 93 hg19 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 740615 INDEL_multiallelic 7326 93 hg19 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7833859 INDEL_biallelic 122748 94 hg19 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 43122653 SNP_biallelic 994779 99 hg19 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6810327 INDEL_biallelic 100088 99 hg19 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1331022 SNP_multiallelic 23327 99 hg19 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 774651 INDEL_multiallelic 7326 99 hg19 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 40727201 SNP_biallelic 960777 103 hg19 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6432641 INDEL_biallelic 93594 103 hg19 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1326085 SNP_multiallelic 23327 103 hg19 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 771529 INDEL_multiallelic 7326 103 hg19 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 39713569 SNP_biallelic 930494 105 hg19 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6425474 INDEL_biallelic 93461 105 hg19 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1327915 SNP_multiallelic 23327 105 hg19 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 771101 INDEL_multiallelic 7326 105 hg19 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1356917 SNP_multiallelic 23327 94 hg19 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 781166 INDEL_multiallelic 7326 94 hg19 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1367785 SNP_multiallelic 23327 102 hg19 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 68992761 SNP_biallelic 1561621 99 hg19 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 9623599 INDEL_biallelic 146432 99 hg19 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1525289 SNP_multiallelic 23327 99 hg19 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 855758 INDEL_multiallelic 7326 99 hg19 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 799056 INDEL_multiallelic 7326 102 hg19 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 39304497 SNP_biallelic 880519 99 hg19 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6607695 INDEL_biallelic 96354 99 hg19 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1327361 SNP_multiallelic 23327 99 hg19 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 771370 INDEL_multiallelic 7326 99 hg19 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 40081768 SNP_biallelic 937551 91 hg19 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6487492 INDEL_biallelic 97933 91 hg19 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1304251 SNP_multiallelic 23327 91 hg19 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 751269 INDEL_multiallelic 7326 91 hg19 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 45507413 SNP_biallelic 1032251 103 hg19 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7114278 INDEL_biallelic 103015 103 hg19 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1365292 SNP_multiallelic 23327 103 hg19 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 796532 INDEL_multiallelic 7326 103 hg19 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 76724612 SNP_biallelic 1670336 113 hg19 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10339675 INDEL_biallelic 148673 113 hg19 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1598702 SNP_multiallelic 23327 113 hg19 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 912184 INDEL_multiallelic 7326 113 hg19 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 48426964 SNP_biallelic 1100765 107 hg19 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7422380 INDEL_biallelic 107944 107 hg19 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1373173 SNP_multiallelic 23327 107 hg19 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 804819 INDEL_multiallelic 7326 107 hg19 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 47102443 SNP_biallelic 1089863 102 hg19 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7215027 INDEL_biallelic 105023 102 hg19 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 38796191 SNP_biallelic 899395 104 hg19 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6434143 INDEL_biallelic 92928 104 hg19 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1326810 SNP_multiallelic 23327 104 hg19 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 774227 INDEL_multiallelic 7326 104 hg19 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 8772456 INDEL_biallelic 134300 104 hg19 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 40501174 SNP_biallelic 968906 99 hg19 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6400007 INDEL_biallelic 94574 99 hg19 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1312680 SNP_multiallelic 23327 99 hg19 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 760200 INDEL_multiallelic 7326 99 hg19 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1425559 SNP_multiallelic 23327 104 hg19 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 73828281 SNP_biallelic 1697053 99 hg19 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 9772611 INDEL_biallelic 149110 99 hg19 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1524740 SNP_multiallelic 23327 99 hg19 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 855664 INDEL_multiallelic 7326 99 hg19 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 826942 INDEL_multiallelic 7326 104 hg19 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 65808259 SNP_biallelic 1597935 85 hg19 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9008712 INDEL_biallelic 146377 85 hg19 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1454714 SNP_multiallelic 23327 85 hg19 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 801855 INDEL_multiallelic 7326 85 hg19 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 38618680 SNP_biallelic 1041319 64 hg19 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6105071 INDEL_biallelic 107851 64 hg19 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1192389 SNP_multiallelic 23327 64 hg19 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 671048 INDEL_multiallelic 7326 64 hg19 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 40820192 SNP_biallelic 1032533 85 hg19 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6451671 INDEL_biallelic 104530 85 hg19 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1260497 SNP_multiallelic 23327 85 hg19 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 722524 INDEL_multiallelic 7326 85 hg19 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 46047039 SNP_biallelic 1087913 96 hg19 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7083144 INDEL_biallelic 106167 96 hg19 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1342827 SNP_multiallelic 23327 96 hg19 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 780587 INDEL_multiallelic 7326 96 hg19 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 60852277 SNP_biallelic 1405464 104 hg19 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 47289918 SNP_biallelic 1094895 102 hg19 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7223606 INDEL_biallelic 104938 102 hg19 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1367563 SNP_multiallelic 23327 102 hg19 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 800263 INDEL_multiallelic 7326 102 hg19 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 46959052 SNP_biallelic 1063132 107 hg19 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7194040 INDEL_biallelic 102782 107 hg19 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1367832 SNP_multiallelic 23327 107 hg19 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 803475 INDEL_multiallelic 7326 107 hg19 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 73347200 SNP_biallelic 1609888 108 hg19 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10107993 INDEL_biallelic 149528 108 hg19 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1573857 SNP_multiallelic 23327 108 hg19 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/pop/1_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 887477 INDEL_multiallelic 7326 108 hg19 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EUR_SNP_biallelic.no_monomorphic.vcf.gz 162244667 SNP_biallelic 1775381 503 hg19 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 20189284 INDEL_biallelic 128842 503 hg19 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AMR_SNP_biallelic.no_monomorphic.vcf.gz 143692044 SNP_biallelic 2055995 347 hg19 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 17836924 INDEL_biallelic 158732 347 hg19 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EAS_SNP_biallelic.no_monomorphic.vcf.gz 151077054 SNP_biallelic 1753142 504 hg19 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 18375269 INDEL_biallelic 114911 504 hg19 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AFR_SNP_biallelic.no_monomorphic.vcf.gz 330655844 SNP_biallelic 3078490 661 hg19 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 34950862 INDEL_biallelic 190702 661 hg19 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_SAS_SNP_biallelic.no_monomorphic.vcf.gz 169943079 SNP_biallelic 1958099 489 hg19 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 20254421 INDEL_biallelic 129735 489 hg19 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2703789 SNP_multiallelic 23327 503 hg19 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1848364 INDEL_multiallelic 7326 503 hg19 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2315236 SNP_multiallelic 23327 347 hg19 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1508132 INDEL_multiallelic 7326 347 hg19 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2603771 SNP_multiallelic 23327 504 hg19 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1769831 INDEL_multiallelic 7326 504 hg19 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4181377 SNP_multiallelic 23327 661 hg19 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2668732 INDEL_multiallelic 7326 661 hg19 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2732010 SNP_multiallelic 23327 489 hg19 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/1/1_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1862682 INDEL_multiallelic 7326 489 hg19 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EUR_SNP_biallelic.no_monomorphic.vcf.gz 174374834 SNP_biallelic 1900346 503 hg19 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1697088 SNP_multiallelic 26327 96 hg19 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 61880127 SNP_biallelic 1658347 61 hg19 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1456002 SNP_multiallelic 26327 61 hg19 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 47694609 SNP_biallelic 1174027 86 hg19 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1454169 SNP_multiallelic 26327 86 hg19 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 39354877 SNP_biallelic 944578 93 hg19 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1435529 SNP_multiallelic 26327 93 hg19 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 46570724 SNP_biallelic 1067063 99 hg19 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1494026 SNP_multiallelic 26327 99 hg19 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 43294259 SNP_biallelic 1019737 103 hg19 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1475212 SNP_multiallelic 26327 103 hg19 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 42252510 SNP_biallelic 989799 105 hg19 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1476317 SNP_multiallelic 26327 105 hg19 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 57668168 SNP_biallelic 1369275 94 hg19 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1527334 SNP_multiallelic 26327 94 hg19 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 75230228 SNP_biallelic 1691728 99 hg19 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1710450 SNP_multiallelic 26327 99 hg19 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 42354549 SNP_biallelic 944023 99 hg19 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1486204 SNP_multiallelic 26327 99 hg19 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 43398889 SNP_biallelic 1008872 91 hg19 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1463602 SNP_multiallelic 26327 91 hg19 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 49036381 SNP_biallelic 1107702 103 hg19 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1523726 SNP_multiallelic 26327 103 hg19 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 83972482 SNP_biallelic 1819902 113 hg19 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1796010 SNP_multiallelic 26327 113 hg19 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 51904837 SNP_biallelic 1169625 107 hg19 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1540060 SNP_multiallelic 26327 107 hg19 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 50816092 SNP_biallelic 1173743 102 hg19 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1523470 SNP_multiallelic 26327 102 hg19 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 41080408 SNP_biallelic 950375 104 hg19 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1474352 SNP_multiallelic 26327 104 hg19 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 43198322 SNP_biallelic 1032615 99 hg19 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1460931 SNP_multiallelic 26327 99 hg19 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 821240 INDEL_multiallelic 7906 99 hg19 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 79878965 SNP_biallelic 1823981 99 hg19 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1711612 SNP_multiallelic 26327 99 hg19 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 71771824 SNP_biallelic 1733168 85 hg19 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1629930 SNP_multiallelic 26327 85 hg19 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 41335255 SNP_biallelic 1109632 64 hg19 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1333003 SNP_multiallelic 26327 64 hg19 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 43703987 SNP_biallelic 1105213 85 hg19 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1407240 SNP_multiallelic 26327 85 hg19 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 49886234 SNP_biallelic 1176189 96 hg19 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1498891 SNP_multiallelic 26327 96 hg19 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 65280862 SNP_biallelic 1500215 104 hg19 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1596313 SNP_multiallelic 26327 104 hg19 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 50908362 SNP_biallelic 1176199 102 hg19 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1524053 SNP_multiallelic 26327 102 hg19 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 50838036 SNP_biallelic 1142285 107 hg19 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1534622 SNP_multiallelic 26327 107 hg19 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 79934839 SNP_biallelic 1745016 108 hg19 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1765630 SNP_multiallelic 26327 108 hg19 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7395213 INDEL_biallelic 108242 103 hg19 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 80424483 SNP_biallelic 1859060 96 hg19 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 10448881 INDEL_biallelic 165417 96 hg19 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 917457 INDEL_multiallelic 7906 96 hg19 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 8392397 INDEL_biallelic 154390 61 hg19 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 767587 INDEL_multiallelic 7906 61 hg19 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6999384 INDEL_biallelic 110152 86 hg19 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 807368 INDEL_multiallelic 7906 86 hg19 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6163890 INDEL_biallelic 93679 93 hg19 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 797476 INDEL_multiallelic 7906 93 hg19 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 7093808 INDEL_biallelic 105161 99 hg19 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 837762 INDEL_multiallelic 7906 99 hg19 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6567342 INDEL_biallelic 96602 103 hg19 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 831053 INDEL_multiallelic 7906 103 hg19 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6565469 INDEL_biallelic 96837 105 hg19 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 832778 INDEL_multiallelic 7906 105 hg19 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 8288703 INDEL_biallelic 131610 94 hg19 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 848360 INDEL_multiallelic 7906 94 hg19 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 10147570 INDEL_biallelic 155836 99 hg19 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 929716 INDEL_multiallelic 7906 99 hg19 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6870937 INDEL_biallelic 101379 99 hg19 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 833378 INDEL_multiallelic 7906 99 hg19 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6779092 INDEL_biallelic 103220 91 hg19 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 812189 INDEL_multiallelic 7906 91 hg19 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 860093 INDEL_multiallelic 7906 103 hg19 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10934281 INDEL_biallelic 158759 113 hg19 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 990529 INDEL_multiallelic 7906 113 hg19 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7701207 INDEL_biallelic 112713 107 hg19 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 870402 INDEL_multiallelic 7906 107 hg19 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7474631 INDEL_biallelic 110045 102 hg19 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 862314 INDEL_multiallelic 7906 102 hg19 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6572581 INDEL_biallelic 96077 104 hg19 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 835042 INDEL_multiallelic 7906 104 hg19 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6538938 INDEL_biallelic 97699 99 hg19 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 10277528 INDEL_biallelic 157852 99 hg19 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 929230 INDEL_multiallelic 7906 99 hg19 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9512712 INDEL_biallelic 155862 85 hg19 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 870374 INDEL_multiallelic 7906 85 hg19 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6332251 INDEL_biallelic 113095 64 hg19 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 723708 INDEL_multiallelic 7906 64 hg19 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6669289 INDEL_biallelic 109697 85 hg19 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 778990 INDEL_multiallelic 7906 85 hg19 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7372930 INDEL_biallelic 111791 96 hg19 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 842386 INDEL_multiallelic 7906 96 hg19 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 9142653 INDEL_biallelic 141311 104 hg19 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 893279 INDEL_multiallelic 7906 104 hg19 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7487155 INDEL_biallelic 110148 102 hg19 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 862972 INDEL_multiallelic 7906 102 hg19 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7517488 INDEL_biallelic 108295 107 hg19 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 870063 INDEL_multiallelic 7906 107 hg19 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10669890 INDEL_biallelic 159307 108 hg19 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/pop/2_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 964499 INDEL_multiallelic 7906 108 hg19 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 21074708 INDEL_biallelic 137996 489 hg19 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 21057000 INDEL_biallelic 135929 503 hg19 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AMR_SNP_biallelic.no_monomorphic.vcf.gz 154914508 SNP_biallelic 2225269 347 hg19 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 18655847 INDEL_biallelic 169488 347 hg19 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EAS_SNP_biallelic.no_monomorphic.vcf.gz 160733092 SNP_biallelic 1894350 504 hg19 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 18825232 INDEL_biallelic 120815 504 hg19 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AFR_SNP_biallelic.no_monomorphic.vcf.gz 359059479 SNP_biallelic 3354841 661 hg19 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 36911842 INDEL_biallelic 205154 661 hg19 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_SAS_SNP_biallelic.no_monomorphic.vcf.gz 183252958 SNP_biallelic 2131298 489 hg19 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 3037363 SNP_multiallelic 26327 503 hg19 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 2002997 INDEL_multiallelic 7906 503 hg19 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2589618 SNP_multiallelic 26327 347 hg19 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1632343 INDEL_multiallelic 7906 347 hg19 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2878351 SNP_multiallelic 26327 504 hg19 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1910428 INDEL_multiallelic 7906 504 hg19 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4692125 SNP_multiallelic 26327 661 hg19 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2910415 INDEL_multiallelic 7906 661 hg19 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 3036250 SNP_multiallelic 26327 489 hg19 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/2/2_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2008200 INDEL_multiallelic 7906 489 hg19 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 787170 INDEL_multiallelic 6782 96 hg19 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 67010273 SNP_biallelic 1550239 96 hg19 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 8783988 INDEL_biallelic 139377 96 hg19 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1448262 SNP_multiallelic 22104 96 hg19 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1240864 SNP_multiallelic 22104 61 hg19 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 48588527 SNP_biallelic 1157182 94 hg19 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 51462981 SNP_biallelic 1382344 61 hg19 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7057463 INDEL_biallelic 130316 61 hg19 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 659145 INDEL_multiallelic 6782 61 hg19 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 40019063 SNP_biallelic 985548 86 hg19 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5895825 INDEL_biallelic 93016 86 hg19 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1243546 SNP_multiallelic 22104 86 hg19 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 695474 INDEL_multiallelic 6782 86 hg19 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 33548727 SNP_biallelic 806252 93 hg19 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5262076 INDEL_biallelic 80258 93 hg19 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1230941 SNP_multiallelic 22104 93 hg19 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 690339 INDEL_multiallelic 6782 93 hg19 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7016323 INDEL_biallelic 111848 94 hg19 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 38865941 SNP_biallelic 894041 99 hg19 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 5936860 INDEL_biallelic 88369 99 hg19 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1272421 SNP_multiallelic 22104 99 hg19 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 722706 INDEL_multiallelic 6782 99 hg19 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 36826274 SNP_biallelic 867946 103 hg19 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5618090 INDEL_biallelic 83085 103 hg19 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1265206 SNP_multiallelic 22104 103 hg19 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 717491 INDEL_multiallelic 6782 103 hg19 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 35740476 SNP_biallelic 838157 105 hg19 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5586037 INDEL_biallelic 82618 105 hg19 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1264665 SNP_multiallelic 22104 105 hg19 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 717241 INDEL_multiallelic 6782 105 hg19 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1303785 SNP_multiallelic 22104 94 hg19 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 732141 INDEL_multiallelic 6782 94 hg19 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1307539 SNP_multiallelic 22104 102 hg19 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 62756592 SNP_biallelic 1414512 99 hg19 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8554058 INDEL_biallelic 131710 99 hg19 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1458847 SNP_multiallelic 22104 99 hg19 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 797850 INDEL_multiallelic 6782 99 hg19 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 741766 INDEL_multiallelic 6782 102 hg19 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 35254369 SNP_biallelic 789535 99 hg19 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5746270 INDEL_biallelic 85012 99 hg19 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1266941 SNP_multiallelic 22104 99 hg19 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 719059 INDEL_multiallelic 6782 99 hg19 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 36240972 SNP_biallelic 846434 91 hg19 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5661224 INDEL_biallelic 86507 91 hg19 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1244989 SNP_multiallelic 22104 91 hg19 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 700464 INDEL_multiallelic 6782 91 hg19 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 41152408 SNP_biallelic 930259 103 hg19 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6220913 INDEL_biallelic 91331 103 hg19 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1304936 SNP_multiallelic 22104 103 hg19 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 740524 INDEL_multiallelic 6782 103 hg19 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 70216311 SNP_biallelic 1522510 113 hg19 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9231260 INDEL_biallelic 134365 113 hg19 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1533098 SNP_multiallelic 22104 113 hg19 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 849819 INDEL_multiallelic 6782 113 hg19 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 43543985 SNP_biallelic 985329 107 hg19 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6479601 INDEL_biallelic 95452 107 hg19 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1313956 SNP_multiallelic 22104 107 hg19 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 751628 INDEL_multiallelic 6782 107 hg19 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 42748256 SNP_biallelic 987883 102 hg19 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6304871 INDEL_biallelic 93120 102 hg19 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 34858170 SNP_biallelic 808737 104 hg19 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5604040 INDEL_biallelic 82333 104 hg19 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1265867 SNP_multiallelic 22104 104 hg19 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 720610 INDEL_multiallelic 6782 104 hg19 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7685036 INDEL_biallelic 119043 104 hg19 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 36583797 SNP_biallelic 874934 99 hg19 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5567167 INDEL_biallelic 83541 99 hg19 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1252731 SNP_multiallelic 22104 99 hg19 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 708200 INDEL_multiallelic 6782 99 hg19 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1362568 SNP_multiallelic 22104 104 hg19 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 66934562 SNP_biallelic 1530664 99 hg19 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8662962 INDEL_biallelic 133453 99 hg19 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1462189 SNP_multiallelic 22104 99 hg19 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 798105 INDEL_multiallelic 6782 99 hg19 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 769865 INDEL_multiallelic 6782 104 hg19 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 59832003 SNP_biallelic 1447902 85 hg19 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8018353 INDEL_biallelic 131894 85 hg19 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1389256 SNP_multiallelic 22104 85 hg19 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 745717 INDEL_multiallelic 6782 85 hg19 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 34565229 SNP_biallelic 930173 64 hg19 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5319866 INDEL_biallelic 95139 64 hg19 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1136299 SNP_multiallelic 22104 64 hg19 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 623818 INDEL_multiallelic 6782 64 hg19 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 38135831 SNP_biallelic 967642 85 hg19 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5774910 INDEL_biallelic 95684 85 hg19 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1208878 SNP_multiallelic 22104 85 hg19 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 673499 INDEL_multiallelic 6782 85 hg19 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 42002230 SNP_biallelic 991972 96 hg19 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6216678 INDEL_biallelic 94570 96 hg19 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1283509 SNP_multiallelic 22104 96 hg19 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 724641 INDEL_multiallelic 6782 96 hg19 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 54545501 SNP_biallelic 1253972 104 hg19 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 42779405 SNP_biallelic 989134 102 hg19 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6311688 INDEL_biallelic 93125 102 hg19 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1305916 SNP_multiallelic 22104 102 hg19 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 742724 INDEL_multiallelic 6782 102 hg19 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 42368627 SNP_biallelic 957033 107 hg19 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6285961 INDEL_biallelic 91163 107 hg19 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1305196 SNP_multiallelic 22104 107 hg19 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 748820 INDEL_multiallelic 6782 107 hg19 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 66939402 SNP_biallelic 1465587 108 hg19 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9014485 INDEL_biallelic 135281 108 hg19 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1506209 SNP_multiallelic 22104 108 hg19 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/pop/3_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 828475 INDEL_multiallelic 6782 108 hg19 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_SAS_SNP_biallelic.no_monomorphic.vcf.gz 154624441 SNP_biallelic 1771116 489 hg19 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 17811454 INDEL_biallelic 116136 489 hg19 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EUR_SNP_biallelic.no_monomorphic.vcf.gz 146773485 SNP_biallelic 1588819 503 hg19 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17743512 INDEL_biallelic 115054 503 hg19 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AMR_SNP_biallelic.no_monomorphic.vcf.gz 131048041 SNP_biallelic 1863878 347 hg19 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15831899 INDEL_biallelic 143570 347 hg19 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EAS_SNP_biallelic.no_monomorphic.vcf.gz 136553934 SNP_biallelic 1576863 504 hg19 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 16082757 INDEL_biallelic 102708 504 hg19 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AFR_SNP_biallelic.no_monomorphic.vcf.gz 300836491 SNP_biallelic 2767163 661 hg19 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 31176193 INDEL_biallelic 172019 661 hg19 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2607279 SNP_multiallelic 22104 503 hg19 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1736276 INDEL_multiallelic 6782 503 hg19 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2231187 SNP_multiallelic 22104 347 hg19 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1415553 INDEL_multiallelic 6782 347 hg19 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2499144 SNP_multiallelic 22104 504 hg19 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1660166 INDEL_multiallelic 6782 504 hg19 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4036870 SNP_multiallelic 22104 661 hg19 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2500644 INDEL_multiallelic 6782 661 hg19 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2632578 SNP_multiallelic 22104 489 hg19 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/3/3_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1738441 INDEL_multiallelic 6782 489 hg19 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 828814 INDEL_multiallelic 7148 96 hg19 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 67529485 SNP_biallelic 1578840 96 hg19 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 8936725 INDEL_biallelic 143565 96 hg19 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1474733 SNP_multiallelic 22493 96 hg19 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1266250 SNP_multiallelic 22493 61 hg19 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 48045196 SNP_biallelic 1157059 94 hg19 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 51812255 SNP_biallelic 1407179 61 hg19 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7179502 INDEL_biallelic 133707 61 hg19 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 693169 INDEL_multiallelic 7148 61 hg19 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 40196604 SNP_biallelic 1002367 86 hg19 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5999047 INDEL_biallelic 95779 86 hg19 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1274129 SNP_multiallelic 22493 86 hg19 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 731779 INDEL_multiallelic 7148 86 hg19 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 33553649 SNP_biallelic 814284 93 hg19 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5310192 INDEL_biallelic 81705 93 hg19 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1260558 SNP_multiallelic 22493 93 hg19 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 726680 INDEL_multiallelic 7148 93 hg19 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 6985906 INDEL_biallelic 112299 94 hg19 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 39262986 SNP_biallelic 914949 99 hg19 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6013823 INDEL_biallelic 90720 99 hg19 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1303178 SNP_multiallelic 22493 99 hg19 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 758735 INDEL_multiallelic 7148 99 hg19 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 36788127 SNP_biallelic 874130 103 hg19 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5648236 INDEL_biallelic 84009 103 hg19 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1295258 SNP_multiallelic 22493 103 hg19 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 755945 INDEL_multiallelic 7148 103 hg19 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 35927569 SNP_biallelic 850297 105 hg19 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5647537 INDEL_biallelic 84083 105 hg19 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1296704 SNP_multiallelic 22493 105 hg19 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 757043 INDEL_multiallelic 7148 105 hg19 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1331243 SNP_multiallelic 22493 94 hg19 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 766101 INDEL_multiallelic 7148 94 hg19 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1339173 SNP_multiallelic 22493 102 hg19 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 63506200 SNP_biallelic 1448081 99 hg19 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8712589 INDEL_biallelic 135811 99 hg19 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1489220 SNP_multiallelic 22493 99 hg19 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 839221 INDEL_multiallelic 7148 99 hg19 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 782579 INDEL_multiallelic 7148 102 hg19 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 35887247 SNP_biallelic 816145 99 hg19 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5842528 INDEL_biallelic 87677 99 hg19 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1299444 SNP_multiallelic 22493 99 hg19 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 755383 INDEL_multiallelic 7148 99 hg19 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 36459535 SNP_biallelic 862121 91 hg19 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5727434 INDEL_biallelic 88626 91 hg19 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1278087 SNP_multiallelic 22493 91 hg19 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 734363 INDEL_multiallelic 7148 91 hg19 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 41397098 SNP_biallelic 946826 103 hg19 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6316523 INDEL_biallelic 93897 103 hg19 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1338250 SNP_multiallelic 22493 103 hg19 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 780250 INDEL_multiallelic 7148 103 hg19 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 70688325 SNP_biallelic 1548298 113 hg19 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9361856 INDEL_biallelic 137901 113 hg19 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1563063 SNP_multiallelic 22493 113 hg19 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 894168 INDEL_multiallelic 7148 113 hg19 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 44032462 SNP_biallelic 1006949 107 hg19 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6557480 INDEL_biallelic 97653 107 hg19 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1349472 SNP_multiallelic 22493 107 hg19 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 788626 INDEL_multiallelic 7148 107 hg19 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 43095936 SNP_biallelic 1006909 102 hg19 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6413387 INDEL_biallelic 95831 102 hg19 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 34674400 SNP_biallelic 811870 104 hg19 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5612427 INDEL_biallelic 83126 104 hg19 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1293865 SNP_multiallelic 22493 104 hg19 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 756598 INDEL_multiallelic 7148 104 hg19 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7787441 INDEL_biallelic 122208 104 hg19 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 36641858 SNP_biallelic 883951 99 hg19 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5628373 INDEL_biallelic 85087 99 hg19 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1284054 SNP_multiallelic 22493 99 hg19 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 745963 INDEL_multiallelic 7148 99 hg19 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1394596 SNP_multiallelic 22493 104 hg19 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 67048932 SNP_biallelic 1549549 99 hg19 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8797952 INDEL_biallelic 137212 99 hg19 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1487383 SNP_multiallelic 22493 99 hg19 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 838409 INDEL_multiallelic 7148 99 hg19 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 809725 INDEL_multiallelic 7148 104 hg19 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 60512288 SNP_biallelic 1480492 85 hg19 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8153628 INDEL_biallelic 135461 85 hg19 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1418747 SNP_multiallelic 22493 85 hg19 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 785028 INDEL_multiallelic 7148 85 hg19 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 34406192 SNP_biallelic 940161 64 hg19 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5342193 INDEL_biallelic 96593 64 hg19 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1160630 SNP_multiallelic 22493 64 hg19 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 652773 INDEL_multiallelic 7148 64 hg19 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 37685727 SNP_biallelic 965826 85 hg19 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5773395 INDEL_biallelic 96322 85 hg19 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1234454 SNP_multiallelic 22493 85 hg19 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 705858 INDEL_multiallelic 7148 85 hg19 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 42281605 SNP_biallelic 1008233 96 hg19 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6304470 INDEL_biallelic 96872 96 hg19 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1316608 SNP_multiallelic 22493 96 hg19 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 763891 INDEL_multiallelic 7148 96 hg19 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 55004368 SNP_biallelic 1280770 104 hg19 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 43215265 SNP_biallelic 1011929 102 hg19 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6421570 INDEL_biallelic 95870 102 hg19 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1339602 SNP_multiallelic 22493 102 hg19 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 782797 INDEL_multiallelic 7148 102 hg19 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 42830692 SNP_biallelic 977013 107 hg19 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6385914 INDEL_biallelic 93719 107 hg19 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1342924 SNP_multiallelic 22493 107 hg19 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 786996 INDEL_multiallelic 7148 107 hg19 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 67290460 SNP_biallelic 1486796 108 hg19 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9147817 INDEL_biallelic 138681 108 hg19 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1538198 SNP_multiallelic 22493 108 hg19 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/pop/4_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 870442 INDEL_multiallelic 7148 108 hg19 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 18043620 INDEL_biallelic 119092 489 hg19 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EUR_SNP_biallelic.no_monomorphic.vcf.gz 146283538 SNP_biallelic 1587891 503 hg19 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17861944 INDEL_biallelic 116845 503 hg19 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AMR_SNP_biallelic.no_monomorphic.vcf.gz 128495009 SNP_biallelic 1856535 347 hg19 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15830885 INDEL_biallelic 145355 347 hg19 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EAS_SNP_biallelic.no_monomorphic.vcf.gz 135144850 SNP_biallelic 1553949 504 hg19 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 16201307 INDEL_biallelic 104028 504 hg19 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AFR_SNP_biallelic.no_monomorphic.vcf.gz 300836095 SNP_biallelic 2766085 661 hg19 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 31631988 INDEL_biallelic 176473 661 hg19 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_SAS_SNP_biallelic.no_monomorphic.vcf.gz 154059791 SNP_biallelic 1766027 489 hg19 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2648110 SNP_multiallelic 22493 503 hg19 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1801396 INDEL_multiallelic 7148 503 hg19 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2252592 SNP_multiallelic 22493 347 hg19 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1468716 INDEL_multiallelic 7148 347 hg19 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2534265 SNP_multiallelic 22493 504 hg19 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1730204 INDEL_multiallelic 7148 504 hg19 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4086611 SNP_multiallelic 22493 661 hg19 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2630562 INDEL_multiallelic 7148 661 hg19 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2676303 SNP_multiallelic 22493 489 hg19 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/4/4_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1817369 INDEL_multiallelic 7148 489 hg19 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1331686 SNP_multiallelic 20577 96 hg19 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1142940 SNP_multiallelic 20577 61 hg19 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 60682649 SNP_biallelic 1413351 96 hg19 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 8049534 INDEL_biallelic 128470 96 hg19 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 729938 INDEL_multiallelic 6298 96 hg19 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 46342447 SNP_biallelic 1251383 61 hg19 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 6454642 INDEL_biallelic 119600 61 hg19 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 610403 INDEL_multiallelic 6298 61 hg19 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 30959717 SNP_biallelic 732813 105 hg19 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 34973245 SNP_biallelic 866826 86 hg19 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5291282 INDEL_biallelic 83466 86 hg19 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1137144 SNP_multiallelic 20577 86 hg19 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 639899 INDEL_multiallelic 6298 86 hg19 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4957299 INDEL_biallelic 73420 105 hg19 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 28869921 SNP_biallelic 699652 93 hg19 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4654007 INDEL_biallelic 71016 93 hg19 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1120924 SNP_multiallelic 20577 93 hg19 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 631079 INDEL_multiallelic 6298 93 hg19 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1151975 SNP_multiallelic 20577 105 hg19 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 34498532 SNP_biallelic 795550 99 hg19 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 5386366 INDEL_biallelic 80232 99 hg19 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1169638 SNP_multiallelic 20577 99 hg19 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 667041 INDEL_multiallelic 6298 99 hg19 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 657894 INDEL_multiallelic 6298 105 hg19 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 31675377 SNP_biallelic 753336 103 hg19 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4964061 INDEL_biallelic 73322 103 hg19 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1152512 SNP_multiallelic 20577 103 hg19 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 657868 INDEL_multiallelic 6298 103 hg19 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 43418179 SNP_biallelic 1042349 94 hg19 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 6364750 INDEL_biallelic 101919 94 hg19 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1196354 SNP_multiallelic 20577 94 hg19 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 673925 INDEL_multiallelic 6298 94 hg19 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 56927143 SNP_biallelic 1290139 99 hg19 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 7839363 INDEL_biallelic 121303 99 hg19 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1346074 SNP_multiallelic 20577 99 hg19 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 740529 INDEL_multiallelic 6298 99 hg19 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 31357048 SNP_biallelic 705642 99 hg19 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5203741 INDEL_biallelic 77008 99 hg19 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1164538 SNP_multiallelic 20577 99 hg19 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 662807 INDEL_multiallelic 6298 99 hg19 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 32210181 SNP_biallelic 754644 91 hg19 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5142023 INDEL_biallelic 78657 91 hg19 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1145114 SNP_multiallelic 20577 91 hg19 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 646443 INDEL_multiallelic 6298 91 hg19 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 37621649 SNP_biallelic 874692 102 hg19 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 36257157 SNP_biallelic 824727 103 hg19 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5619214 INDEL_biallelic 82532 103 hg19 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1193058 SNP_multiallelic 20577 103 hg19 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 682027 INDEL_multiallelic 6298 103 hg19 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5686269 INDEL_biallelic 83962 102 hg19 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 63355193 SNP_biallelic 1381133 113 hg19 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 8424851 INDEL_biallelic 123227 113 hg19 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1410242 SNP_multiallelic 20577 113 hg19 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 789245 INDEL_multiallelic 6298 113 hg19 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1194799 SNP_multiallelic 20577 102 hg19 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 38745309 SNP_biallelic 880466 107 hg19 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5881084 INDEL_biallelic 86762 107 hg19 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1205253 SNP_multiallelic 20577 107 hg19 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 691930 INDEL_multiallelic 6298 107 hg19 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 683841 INDEL_multiallelic 6298 102 hg19 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 29987175 SNP_biallelic 701701 104 hg19 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4958255 INDEL_biallelic 72879 104 hg19 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1152428 SNP_multiallelic 20577 104 hg19 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 659709 INDEL_multiallelic 6298 104 hg19 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 31658838 SNP_biallelic 764595 99 hg19 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4940807 INDEL_biallelic 74200 99 hg19 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1141777 SNP_multiallelic 20577 99 hg19 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 648870 INDEL_multiallelic 6298 99 hg19 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 60113447 SNP_biallelic 1382705 99 hg19 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7927359 INDEL_biallelic 122811 99 hg19 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1344327 SNP_multiallelic 20577 99 hg19 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 739577 INDEL_multiallelic 6298 99 hg19 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 53985693 SNP_biallelic 1312966 85 hg19 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 7319350 INDEL_biallelic 120852 85 hg19 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1280238 SNP_multiallelic 20577 85 hg19 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 692245 INDEL_multiallelic 6298 85 hg19 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 30950437 SNP_biallelic 838636 64 hg19 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4850633 INDEL_biallelic 87183 64 hg19 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1042058 SNP_multiallelic 20577 64 hg19 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 573772 INDEL_multiallelic 6298 64 hg19 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 48250075 SNP_biallelic 1116199 104 hg19 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 31475057 SNP_biallelic 801153 85 hg19 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4963556 INDEL_biallelic 81571 85 hg19 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1096565 SNP_multiallelic 20577 85 hg19 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 614178 INDEL_multiallelic 6298 85 hg19 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6956765 INDEL_biallelic 108232 104 hg19 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 36742366 SNP_biallelic 871080 96 hg19 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 5578159 INDEL_biallelic 84671 96 hg19 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1173955 SNP_multiallelic 20577 96 hg19 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 668016 INDEL_multiallelic 6298 96 hg19 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1247956 SNP_multiallelic 20577 104 hg19 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 708467 INDEL_multiallelic 6298 104 hg19 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 37644400 SNP_biallelic 876248 102 hg19 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5704630 INDEL_biallelic 84305 102 hg19 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1194189 SNP_multiallelic 20577 102 hg19 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 684053 INDEL_multiallelic 6298 102 hg19 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 37510279 SNP_biallelic 848465 107 hg19 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5702749 INDEL_biallelic 82646 107 hg19 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1200177 SNP_multiallelic 20577 107 hg19 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 691187 INDEL_multiallelic 6298 107 hg19 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 60363323 SNP_biallelic 1326429 108 hg19 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 8234277 INDEL_biallelic 123957 108 hg19 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1387897 SNP_multiallelic 20577 108 hg19 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/pop/5_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 769048 INDEL_multiallelic 6298 108 hg19 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_SAS_SNP_biallelic.no_monomorphic.vcf.gz 135019870 SNP_biallelic 1571333 489 hg19 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 16076103 INDEL_biallelic 105018 489 hg19 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EUR_SNP_biallelic.no_monomorphic.vcf.gz 129078070 SNP_biallelic 1417257 503 hg19 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 16065663 INDEL_biallelic 104166 503 hg19 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AMR_SNP_biallelic.no_monomorphic.vcf.gz 114020332 SNP_biallelic 1666768 347 hg19 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 14252323 INDEL_biallelic 130619 347 hg19 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EAS_SNP_biallelic.no_monomorphic.vcf.gz 117903817 SNP_biallelic 1389212 504 hg19 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 14330015 INDEL_biallelic 91448 504 hg19 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AFR_SNP_biallelic.no_monomorphic.vcf.gz 268459655 SNP_biallelic 2515190 661 hg19 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 28433734 INDEL_biallelic 158686 661 hg19 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2356576 SNP_multiallelic 20577 503 hg19 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1581778 INDEL_multiallelic 6298 503 hg19 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2009666 SNP_multiallelic 20577 347 hg19 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1282944 INDEL_multiallelic 6298 347 hg19 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2228801 SNP_multiallelic 20577 504 hg19 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1495212 INDEL_multiallelic 6298 504 hg19 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3694495 SNP_multiallelic 20577 661 hg19 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2317632 INDEL_multiallelic 6298 661 hg19 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2366633 SNP_multiallelic 20577 489 hg19 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/5/5_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1581672 INDEL_multiallelic 6298 489 hg19 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 748929 INDEL_multiallelic 6379 96 hg19 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 59599060 SNP_biallelic 1386846 96 hg19 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 8017744 INDEL_biallelic 127665 96 hg19 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1320794 SNP_multiallelic 19739 96 hg19 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1132730 SNP_multiallelic 19739 61 hg19 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 43889362 SNP_biallelic 1045392 94 hg19 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 46216032 SNP_biallelic 1252563 61 hg19 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 6469512 INDEL_biallelic 119834 61 hg19 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 626687 INDEL_multiallelic 6379 61 hg19 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 36579480 SNP_biallelic 905185 86 hg19 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5477904 INDEL_biallelic 86711 86 hg19 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1151967 SNP_multiallelic 19739 86 hg19 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 664457 INDEL_multiallelic 6379 86 hg19 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 30542479 SNP_biallelic 737690 93 hg19 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4870022 INDEL_biallelic 74504 93 hg19 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1137777 SNP_multiallelic 19739 93 hg19 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 660765 INDEL_multiallelic 6379 93 hg19 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 6423136 INDEL_biallelic 102240 94 hg19 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 35776517 SNP_biallelic 824014 99 hg19 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 5506743 INDEL_biallelic 82036 99 hg19 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1181187 SNP_multiallelic 19739 99 hg19 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 691860 INDEL_multiallelic 6379 99 hg19 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 34268102 SNP_biallelic 807426 103 hg19 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5268174 INDEL_biallelic 78197 103 hg19 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1178961 SNP_multiallelic 19739 103 hg19 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 689032 INDEL_multiallelic 6379 103 hg19 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 32916310 SNP_biallelic 773642 105 hg19 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5188843 INDEL_biallelic 77006 105 hg19 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1172132 SNP_multiallelic 19739 105 hg19 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 688935 INDEL_multiallelic 6379 105 hg19 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1204952 SNP_multiallelic 19739 94 hg19 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 697617 INDEL_multiallelic 6379 94 hg19 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1211544 SNP_multiallelic 19739 102 hg19 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 55741646 SNP_biallelic 1264548 99 hg19 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 7773234 INDEL_biallelic 120086 99 hg19 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1329151 SNP_multiallelic 19739 99 hg19 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 758889 INDEL_multiallelic 6379 99 hg19 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 709862 INDEL_multiallelic 6379 102 hg19 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 32924609 SNP_biallelic 742742 99 hg19 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5369060 INDEL_biallelic 79806 99 hg19 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1174916 SNP_multiallelic 19739 99 hg19 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 688550 INDEL_multiallelic 6379 99 hg19 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 33555486 SNP_biallelic 786284 91 hg19 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5287427 INDEL_biallelic 81081 91 hg19 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1156335 SNP_multiallelic 19739 91 hg19 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 669547 INDEL_multiallelic 6379 91 hg19 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 37713014 SNP_biallelic 856365 103 hg19 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5781418 INDEL_biallelic 85303 103 hg19 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1209653 SNP_multiallelic 19739 103 hg19 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 708285 INDEL_multiallelic 6379 103 hg19 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 62609181 SNP_biallelic 1365298 113 hg19 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 8415882 INDEL_biallelic 123108 113 hg19 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1401709 SNP_multiallelic 19739 113 hg19 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 809040 INDEL_multiallelic 6379 113 hg19 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 40179967 SNP_biallelic 907440 107 hg19 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6030784 INDEL_biallelic 88801 107 hg19 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1221154 SNP_multiallelic 19739 107 hg19 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 719115 INDEL_multiallelic 6379 107 hg19 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 39034348 SNP_biallelic 901353 102 hg19 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5866097 INDEL_biallelic 86817 102 hg19 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 32064573 SNP_biallelic 743896 104 hg19 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5187579 INDEL_biallelic 76254 104 hg19 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1175363 SNP_multiallelic 19739 104 hg19 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 690070 INDEL_multiallelic 6379 104 hg19 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6978979 INDEL_biallelic 107592 104 hg19 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 33985500 SNP_biallelic 813373 99 hg19 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5206773 INDEL_biallelic 78360 99 hg19 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1165176 SNP_multiallelic 19739 99 hg19 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 680231 INDEL_multiallelic 6379 99 hg19 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1257493 SNP_multiallelic 19739 104 hg19 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 59339315 SNP_biallelic 1365141 99 hg19 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7879280 INDEL_biallelic 121718 99 hg19 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1330682 SNP_multiallelic 19739 99 hg19 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 758591 INDEL_multiallelic 6379 99 hg19 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 733384 INDEL_multiallelic 6379 104 hg19 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 53261760 SNP_biallelic 1296674 85 hg19 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 7300629 INDEL_biallelic 120269 85 hg19 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1265834 SNP_multiallelic 19739 85 hg19 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 709491 INDEL_multiallelic 6379 85 hg19 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 31855183 SNP_biallelic 864305 64 hg19 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4957993 INDEL_biallelic 89082 64 hg19 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1048073 SNP_multiallelic 19739 64 hg19 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 594622 INDEL_multiallelic 6379 64 hg19 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 33907420 SNP_biallelic 860429 85 hg19 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5241606 INDEL_biallelic 86462 85 hg19 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1112552 SNP_multiallelic 19739 85 hg19 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 640364 INDEL_multiallelic 6379 85 hg19 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 38110312 SNP_biallelic 900323 96 hg19 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 5755737 INDEL_biallelic 87656 96 hg19 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1188164 SNP_multiallelic 19739 96 hg19 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 692640 INDEL_multiallelic 6379 96 hg19 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 48461570 SNP_biallelic 1112443 104 hg19 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 39294742 SNP_biallelic 909879 102 hg19 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5891210 INDEL_biallelic 87260 102 hg19 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1211548 SNP_multiallelic 19739 102 hg19 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 710237 INDEL_multiallelic 6379 102 hg19 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 39432450 SNP_biallelic 890095 107 hg19 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5887401 INDEL_biallelic 85628 107 hg19 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1215639 SNP_multiallelic 19739 107 hg19 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 717928 INDEL_multiallelic 6379 107 hg19 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 59094527 SNP_biallelic 1298992 108 hg19 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 8162555 INDEL_biallelic 122661 108 hg19 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1374094 SNP_multiallelic 19739 108 hg19 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/pop/6_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 786908 INDEL_multiallelic 6379 108 hg19 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_SAS_SNP_biallelic.no_monomorphic.vcf.gz 139766137 SNP_biallelic 1567696 489 hg19 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 16590831 INDEL_biallelic 107481 489 hg19 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EUR_SNP_biallelic.no_monomorphic.vcf.gz 134371514 SNP_biallelic 1423375 503 hg19 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 16554555 INDEL_biallelic 106114 503 hg19 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AMR_SNP_biallelic.no_monomorphic.vcf.gz 115641734 SNP_biallelic 1638515 347 hg19 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 14425718 INDEL_biallelic 129864 347 hg19 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EAS_SNP_biallelic.no_monomorphic.vcf.gz 125559802 SNP_biallelic 1419617 504 hg19 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 15096658 INDEL_biallelic 95933 504 hg19 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AFR_SNP_biallelic.no_monomorphic.vcf.gz 265835397 SNP_biallelic 2436872 661 hg19 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 28360785 INDEL_biallelic 156956 661 hg19 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2461751 SNP_multiallelic 19739 503 hg19 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1654198 INDEL_multiallelic 6379 503 hg19 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2070749 SNP_multiallelic 19739 347 hg19 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1340057 INDEL_multiallelic 6379 347 hg19 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2359497 SNP_multiallelic 19739 504 hg19 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1590064 INDEL_multiallelic 6379 504 hg19 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3692248 SNP_multiallelic 19739 661 hg19 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2377185 INDEL_multiallelic 6379 661 hg19 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2475158 SNP_multiallelic 19739 489 hg19 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/6/6_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1656253 INDEL_multiallelic 6379 489 hg19 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 630016 INDEL_multiallelic 5443 96 hg19 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 55664201 SNP_biallelic 1282927 96 hg19 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 7129716 INDEL_biallelic 112573 96 hg19 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1180347 SNP_multiallelic 18141 96 hg19 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1014335 SNP_multiallelic 18141 61 hg19 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 40015799 SNP_biallelic 946207 94 hg19 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 43222595 SNP_biallelic 1157210 61 hg19 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5772682 INDEL_biallelic 106224 61 hg19 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 528388 INDEL_multiallelic 5443 61 hg19 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 33046589 SNP_biallelic 806025 86 hg19 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4813866 INDEL_biallelic 75101 86 hg19 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1014354 SNP_multiallelic 18141 86 hg19 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 555819 INDEL_multiallelic 5443 86 hg19 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 27653918 SNP_biallelic 655823 93 hg19 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4305721 INDEL_biallelic 64788 93 hg19 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1003016 SNP_multiallelic 18141 93 hg19 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 553747 INDEL_multiallelic 5443 93 hg19 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5684913 INDEL_biallelic 89728 94 hg19 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 32388482 SNP_biallelic 737689 99 hg19 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4893165 INDEL_biallelic 72132 99 hg19 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1039437 SNP_multiallelic 18141 99 hg19 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 576879 INDEL_multiallelic 5443 99 hg19 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 30451796 SNP_biallelic 707782 103 hg19 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4604940 INDEL_biallelic 67065 103 hg19 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1031381 SNP_multiallelic 18141 103 hg19 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 575236 INDEL_multiallelic 5443 103 hg19 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 29583912 SNP_biallelic 683650 105 hg19 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4573437 INDEL_biallelic 66548 105 hg19 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1031886 SNP_multiallelic 18141 105 hg19 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 576879 INDEL_multiallelic 5443 105 hg19 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1061431 SNP_multiallelic 18141 94 hg19 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 583508 INDEL_multiallelic 5443 94 hg19 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1065432 SNP_multiallelic 18141 102 hg19 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 52424534 SNP_biallelic 1178570 99 hg19 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6953599 INDEL_biallelic 106688 99 hg19 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1190512 SNP_multiallelic 18141 99 hg19 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 638396 INDEL_multiallelic 5443 99 hg19 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 594021 INDEL_multiallelic 5443 102 hg19 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 29670533 SNP_biallelic 657587 99 hg19 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4753378 INDEL_biallelic 69608 99 hg19 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1034470 SNP_multiallelic 18141 99 hg19 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 574969 INDEL_multiallelic 5443 99 hg19 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 30064624 SNP_biallelic 694890 91 hg19 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4658315 INDEL_biallelic 70506 91 hg19 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1016446 SNP_multiallelic 18141 91 hg19 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 558433 INDEL_multiallelic 5443 91 hg19 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 34246992 SNP_biallelic 766799 103 hg19 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5112827 INDEL_biallelic 74269 103 hg19 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1064700 SNP_multiallelic 18141 103 hg19 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 591475 INDEL_multiallelic 5443 103 hg19 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 58435225 SNP_biallelic 1261595 113 hg19 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7495503 INDEL_biallelic 108660 113 hg19 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1249511 SNP_multiallelic 18141 113 hg19 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 680442 INDEL_multiallelic 5443 113 hg19 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 36615196 SNP_biallelic 822090 107 hg19 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5361207 INDEL_biallelic 78333 107 hg19 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1073406 SNP_multiallelic 18141 107 hg19 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 599654 INDEL_multiallelic 5443 107 hg19 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 35519504 SNP_biallelic 812419 102 hg19 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5171786 INDEL_biallelic 75379 102 hg19 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 28753816 SNP_biallelic 657506 104 hg19 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4573793 INDEL_biallelic 66164 104 hg19 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1031934 SNP_multiallelic 18141 104 hg19 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 577450 INDEL_multiallelic 5443 104 hg19 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6278521 INDEL_biallelic 96722 104 hg19 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 30252439 SNP_biallelic 714170 99 hg19 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4561236 INDEL_biallelic 67483 99 hg19 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1021029 SNP_multiallelic 18141 99 hg19 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 568868 INDEL_multiallelic 5443 99 hg19 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1111964 SNP_multiallelic 18141 104 hg19 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 55634078 SNP_biallelic 1268333 99 hg19 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7053711 INDEL_biallelic 108301 99 hg19 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1191129 SNP_multiallelic 18141 99 hg19 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 639410 INDEL_multiallelic 5443 99 hg19 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 614397 INDEL_multiallelic 5443 104 hg19 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 50245244 SNP_biallelic 1212138 85 hg19 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6533365 INDEL_biallelic 106901 85 hg19 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1135825 SNP_multiallelic 18141 85 hg19 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 598620 INDEL_multiallelic 5443 85 hg19 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 29142747 SNP_biallelic 778051 64 hg19 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4409361 INDEL_biallelic 78279 64 hg19 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 929321 SNP_multiallelic 18141 64 hg19 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 500706 INDEL_multiallelic 5443 64 hg19 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 30003721 SNP_biallelic 750484 85 hg19 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4564196 INDEL_biallelic 74058 85 hg19 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 979892 SNP_multiallelic 18141 85 hg19 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 536477 INDEL_multiallelic 5443 85 hg19 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 34595531 SNP_biallelic 808226 96 hg19 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 5072368 INDEL_biallelic 76150 96 hg19 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1045574 SNP_multiallelic 18141 96 hg19 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 580342 INDEL_multiallelic 5443 96 hg19 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 45430146 SNP_biallelic 1040518 104 hg19 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 35475646 SNP_biallelic 811523 102 hg19 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5177176 INDEL_biallelic 75510 102 hg19 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1064711 SNP_multiallelic 18141 102 hg19 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 593610 INDEL_multiallelic 5443 102 hg19 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 35605155 SNP_biallelic 797295 107 hg19 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5211360 INDEL_biallelic 74935 107 hg19 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1068477 SNP_multiallelic 18141 107 hg19 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 599188 INDEL_multiallelic 5443 107 hg19 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 55617331 SNP_biallelic 1212181 108 hg19 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 7311785 INDEL_biallelic 109126 108 hg19 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1229600 SNP_multiallelic 18141 108 hg19 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/pop/7_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 662279 INDEL_multiallelic 5443 108 hg19 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 14516322 INDEL_biallelic 93412 489 hg19 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EUR_SNP_biallelic.no_monomorphic.vcf.gz 120817179 SNP_biallelic 1305258 503 hg19 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 14567070 INDEL_biallelic 93451 503 hg19 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AMR_SNP_biallelic.no_monomorphic.vcf.gz 105951759 SNP_biallelic 1520702 347 hg19 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 12803751 INDEL_biallelic 115349 347 hg19 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EAS_SNP_biallelic.no_monomorphic.vcf.gz 111655776 SNP_biallelic 1276202 504 hg19 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 13170822 INDEL_biallelic 82681 504 hg19 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AFR_SNP_biallelic.no_monomorphic.vcf.gz 246517696 SNP_biallelic 2283004 661 hg19 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 25136755 INDEL_biallelic 139052 661 hg19 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_SAS_SNP_biallelic.no_monomorphic.vcf.gz 125944820 SNP_biallelic 1434567 489 hg19 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2098827 SNP_multiallelic 18141 503 hg19 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1362137 INDEL_multiallelic 5443 503 hg19 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1794420 SNP_multiallelic 18141 347 hg19 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1113273 INDEL_multiallelic 5443 347 hg19 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2006635 SNP_multiallelic 18141 504 hg19 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1311011 INDEL_multiallelic 5443 504 hg19 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3264546 SNP_multiallelic 18141 661 hg19 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1985988 INDEL_multiallelic 5443 661 hg19 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2115138 SNP_multiallelic 18141 489 hg19 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/7/7_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1367943 INDEL_multiallelic 5443 489 hg19 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 569466 INDEL_multiallelic 4897 96 hg19 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 53760542 SNP_biallelic 1248312 96 hg19 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6278118 INDEL_biallelic 99788 96 hg19 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1254474 SNP_multiallelic 19522 96 hg19 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1074328 SNP_multiallelic 19522 61 hg19 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 37493253 SNP_biallelic 893683 94 hg19 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 40862358 SNP_biallelic 1099460 61 hg19 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5005022 INDEL_biallelic 92439 61 hg19 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 474788 INDEL_multiallelic 4897 61 hg19 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 31045809 SNP_biallelic 763654 86 hg19 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4107291 INDEL_biallelic 64470 86 hg19 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1075354 SNP_multiallelic 19522 86 hg19 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 498338 INDEL_multiallelic 4897 86 hg19 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 25539161 SNP_biallelic 611580 93 hg19 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3612013 INDEL_biallelic 54540 93 hg19 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1059727 SNP_multiallelic 19522 93 hg19 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 493958 INDEL_multiallelic 4897 93 hg19 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4878082 INDEL_biallelic 77781 94 hg19 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 30266769 SNP_biallelic 695117 99 hg19 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4151438 INDEL_biallelic 61627 99 hg19 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1098673 SNP_multiallelic 19522 99 hg19 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 516495 INDEL_multiallelic 4897 99 hg19 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 28120668 SNP_biallelic 661820 103 hg19 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3860610 INDEL_biallelic 56608 103 hg19 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1090292 SNP_multiallelic 19522 103 hg19 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 513364 INDEL_multiallelic 4897 103 hg19 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 27208597 SNP_biallelic 636197 105 hg19 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3831295 INDEL_biallelic 56149 105 hg19 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1090890 SNP_multiallelic 19522 105 hg19 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 513505 INDEL_multiallelic 4897 105 hg19 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1122143 SNP_multiallelic 19522 94 hg19 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 523324 INDEL_multiallelic 4897 94 hg19 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1129398 SNP_multiallelic 19522 102 hg19 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 50177655 SNP_biallelic 1134472 99 hg19 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6098722 INDEL_biallelic 94113 99 hg19 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1266751 SNP_multiallelic 19522 99 hg19 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 576783 INDEL_multiallelic 4897 99 hg19 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 532369 INDEL_multiallelic 4897 102 hg19 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 27654503 SNP_biallelic 618992 99 hg19 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4030083 INDEL_biallelic 59536 99 hg19 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1092441 SNP_multiallelic 19522 99 hg19 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 513934 INDEL_multiallelic 4897 99 hg19 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 28187008 SNP_biallelic 657297 91 hg19 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3957412 INDEL_biallelic 60337 91 hg19 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1076426 SNP_multiallelic 19522 91 hg19 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 500015 INDEL_multiallelic 4897 91 hg19 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 32066810 SNP_biallelic 724773 103 hg19 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4358053 INDEL_biallelic 63886 103 hg19 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1126865 SNP_multiallelic 19522 103 hg19 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 532003 INDEL_multiallelic 4897 103 hg19 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 56372928 SNP_biallelic 1224710 113 hg19 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6603466 INDEL_biallelic 96228 113 hg19 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1331419 SNP_multiallelic 19522 113 hg19 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 614687 INDEL_multiallelic 4897 113 hg19 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 33931940 SNP_biallelic 767646 107 hg19 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4522678 INDEL_biallelic 66543 107 hg19 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1131471 SNP_multiallelic 19522 107 hg19 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 535102 INDEL_multiallelic 4897 107 hg19 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 33441155 SNP_biallelic 772169 102 hg19 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4421956 INDEL_biallelic 65020 102 hg19 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 26556916 SNP_biallelic 612652 104 hg19 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3844524 INDEL_biallelic 55912 104 hg19 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1091853 SNP_multiallelic 19522 104 hg19 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 514628 INDEL_multiallelic 4897 104 hg19 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5485941 INDEL_biallelic 85237 104 hg19 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 27888274 SNP_biallelic 666240 99 hg19 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3818561 INDEL_biallelic 56798 99 hg19 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1078426 SNP_multiallelic 19522 99 hg19 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 506975 INDEL_multiallelic 4897 99 hg19 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1181561 SNP_multiallelic 19522 104 hg19 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 53690143 SNP_biallelic 1232465 99 hg19 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6200973 INDEL_biallelic 95766 99 hg19 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1268604 SNP_multiallelic 19522 99 hg19 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 576811 INDEL_multiallelic 4897 99 hg19 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 554120 INDEL_multiallelic 4897 104 hg19 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 47948732 SNP_biallelic 1162778 85 hg19 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5727008 INDEL_biallelic 94163 85 hg19 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1206739 SNP_multiallelic 19522 85 hg19 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 539427 INDEL_multiallelic 4897 85 hg19 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 26753246 SNP_biallelic 720722 64 hg19 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3706694 INDEL_biallelic 66277 64 hg19 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 979411 SNP_multiallelic 19522 64 hg19 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 445117 INDEL_multiallelic 4897 64 hg19 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 28910076 SNP_biallelic 733668 85 hg19 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3961558 INDEL_biallelic 65375 85 hg19 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1039775 SNP_multiallelic 19522 85 hg19 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 480805 INDEL_multiallelic 4897 85 hg19 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 32618568 SNP_biallelic 768459 96 hg19 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4337883 INDEL_biallelic 65679 96 hg19 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1109099 SNP_multiallelic 19522 96 hg19 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 520476 INDEL_multiallelic 4897 96 hg19 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 43581645 SNP_biallelic 1004205 104 hg19 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 33437486 SNP_biallelic 771366 102 hg19 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4427794 INDEL_biallelic 65033 102 hg19 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1129236 SNP_multiallelic 19522 102 hg19 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 532434 INDEL_multiallelic 4897 102 hg19 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 33154207 SNP_biallelic 748801 107 hg19 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4404327 INDEL_biallelic 63805 107 hg19 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1128162 SNP_multiallelic 19522 107 hg19 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 535995 INDEL_multiallelic 4897 107 hg19 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 52911263 SNP_biallelic 1159594 108 hg19 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6385409 INDEL_biallelic 95791 108 hg19 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1305549 SNP_multiallelic 19522 108 hg19 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/pop/8_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 598037 INDEL_multiallelic 4897 108 hg19 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EUR_SNP_biallelic.no_monomorphic.vcf.gz 113731063 SNP_biallelic 1239342 503 hg19 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12329062 INDEL_biallelic 80094 503 hg19 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AMR_SNP_biallelic.no_monomorphic.vcf.gz 101972025 SNP_biallelic 1461813 347 hg19 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11073656 INDEL_biallelic 101050 347 hg19 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EAS_SNP_biallelic.no_monomorphic.vcf.gz 104958863 SNP_biallelic 1220715 504 hg19 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11127295 INDEL_biallelic 70656 504 hg19 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AFR_SNP_biallelic.no_monomorphic.vcf.gz 239157791 SNP_biallelic 2220042 661 hg19 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22086989 INDEL_biallelic 122573 661 hg19 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_SAS_SNP_biallelic.no_monomorphic.vcf.gz 120361486 SNP_biallelic 1383010 489 hg19 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12465247 INDEL_biallelic 81290 489 hg19 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2242167 SNP_multiallelic 19522 503 hg19 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1235308 INDEL_multiallelic 4897 503 hg19 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1923566 SNP_multiallelic 19522 347 hg19 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1013093 INDEL_multiallelic 4897 347 hg19 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2149753 SNP_multiallelic 19522 504 hg19 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1184548 INDEL_multiallelic 4897 504 hg19 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3505559 SNP_multiallelic 19522 661 hg19 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1816562 INDEL_multiallelic 4897 661 hg19 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2273543 SNP_multiallelic 19522 489 hg19 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/8/8_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1247146 INDEL_multiallelic 4897 489 hg19 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 451887 INDEL_multiallelic 3941 96 hg19 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 41725881 SNP_biallelic 951867 96 hg19 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5181426 INDEL_biallelic 80846 96 hg19 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 931307 SNP_multiallelic 14375 96 hg19 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 798020 SNP_multiallelic 14375 61 hg19 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 29945688 SNP_biallelic 697846 94 hg19 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 31942015 SNP_biallelic 843257 61 hg19 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4151339 INDEL_biallelic 75251 61 hg19 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 378346 INDEL_multiallelic 3941 61 hg19 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 25154013 SNP_biallelic 604961 86 hg19 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3547430 INDEL_biallelic 54532 86 hg19 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 804899 SNP_multiallelic 14375 86 hg19 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 399497 INDEL_multiallelic 3941 86 hg19 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 21203216 SNP_biallelic 495747 93 hg19 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3200191 INDEL_biallelic 47339 93 hg19 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 797840 SNP_multiallelic 14375 93 hg19 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 396990 INDEL_multiallelic 3941 93 hg19 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4135766 INDEL_biallelic 64365 94 hg19 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 24352482 SNP_biallelic 545596 99 hg19 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3557235 INDEL_biallelic 51494 99 hg19 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 823479 SNP_multiallelic 14375 99 hg19 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 413533 INDEL_multiallelic 3941 99 hg19 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 23257396 SNP_biallelic 533436 103 hg19 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3400211 INDEL_biallelic 48684 103 hg19 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 817601 SNP_multiallelic 14375 103 hg19 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 413230 INDEL_multiallelic 3941 103 hg19 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 22570748 SNP_biallelic 514423 105 hg19 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3383608 INDEL_biallelic 48479 105 hg19 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 818341 SNP_multiallelic 14375 105 hg19 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 413312 INDEL_multiallelic 3941 105 hg19 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 840325 SNP_multiallelic 14375 94 hg19 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 418160 INDEL_multiallelic 3941 94 hg19 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 846779 SNP_multiallelic 14375 102 hg19 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 38924246 SNP_biallelic 863177 99 hg19 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5020070 INDEL_biallelic 75918 99 hg19 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 938519 SNP_multiallelic 14375 99 hg19 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 457165 INDEL_multiallelic 3941 99 hg19 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 426734 INDEL_multiallelic 3941 102 hg19 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 22283484 SNP_biallelic 485440 99 hg19 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3460573 INDEL_biallelic 49770 99 hg19 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 820874 SNP_multiallelic 14375 99 hg19 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 411858 INDEL_multiallelic 3941 99 hg19 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 22792758 SNP_biallelic 518093 91 hg19 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3404166 INDEL_biallelic 50668 91 hg19 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 806558 SNP_multiallelic 14375 91 hg19 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 400749 INDEL_multiallelic 3941 91 hg19 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 26067693 SNP_biallelic 574241 103 hg19 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3770990 INDEL_biallelic 53981 103 hg19 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 845794 SNP_multiallelic 14375 103 hg19 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 425725 INDEL_multiallelic 3941 103 hg19 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 43636266 SNP_biallelic 932737 113 hg19 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 5422436 INDEL_biallelic 77588 113 hg19 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 984196 SNP_multiallelic 14375 113 hg19 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 487195 INDEL_multiallelic 3941 113 hg19 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 27607236 SNP_biallelic 610429 107 hg19 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3905396 INDEL_biallelic 56204 107 hg19 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 849760 SNP_multiallelic 14375 107 hg19 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 428424 INDEL_multiallelic 3941 107 hg19 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 27036051 SNP_biallelic 609606 102 hg19 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3808002 INDEL_biallelic 54816 102 hg19 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 22035121 SNP_biallelic 496114 104 hg19 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3392576 INDEL_biallelic 48156 104 hg19 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 818702 SNP_multiallelic 14375 104 hg19 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 413981 INDEL_multiallelic 3941 104 hg19 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4541387 INDEL_biallelic 68842 104 hg19 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 23091879 SNP_biallelic 537616 99 hg19 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3374720 INDEL_biallelic 49216 99 hg19 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 810728 SNP_multiallelic 14375 99 hg19 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 407309 INDEL_multiallelic 3941 99 hg19 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 877170 SNP_multiallelic 14375 104 hg19 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 41554154 SNP_biallelic 937401 99 hg19 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5103377 INDEL_biallelic 77413 99 hg19 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 939804 SNP_multiallelic 14375 99 hg19 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 457332 INDEL_multiallelic 3941 99 hg19 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 438792 INDEL_multiallelic 3941 104 hg19 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 37668906 SNP_biallelic 898785 85 hg19 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4737152 INDEL_biallelic 76584 85 hg19 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 894387 SNP_multiallelic 14375 85 hg19 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 428693 INDEL_multiallelic 3941 85 hg19 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 21181642 SNP_biallelic 556693 64 hg19 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3129794 INDEL_biallelic 54535 64 hg19 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 732499 SNP_multiallelic 14375 64 hg19 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 356856 INDEL_multiallelic 3941 64 hg19 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 23506193 SNP_biallelic 582487 85 hg19 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3424927 INDEL_biallelic 55179 85 hg19 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 779068 SNP_multiallelic 14375 85 hg19 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 386984 INDEL_multiallelic 3941 85 hg19 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 26406086 SNP_biallelic 608022 96 hg19 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3748996 INDEL_biallelic 55627 96 hg19 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 832471 SNP_multiallelic 14375 96 hg19 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 416368 INDEL_multiallelic 3941 96 hg19 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 33825766 SNP_biallelic 764652 104 hg19 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 27077413 SNP_biallelic 610848 102 hg19 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3814332 INDEL_biallelic 54885 102 hg19 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 846890 SNP_multiallelic 14375 102 hg19 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 427204 INDEL_multiallelic 3941 102 hg19 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 26854620 SNP_biallelic 592191 107 hg19 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3794208 INDEL_biallelic 53616 107 hg19 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 846667 SNP_multiallelic 14375 107 hg19 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 428134 INDEL_multiallelic 3941 107 hg19 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 41456046 SNP_biallelic 893333 108 hg19 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5288144 INDEL_biallelic 77804 108 hg19 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 968462 SNP_multiallelic 14375 108 hg19 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/pop/9_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 474225 INDEL_multiallelic 3941 108 hg19 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EUR_SNP_biallelic.no_monomorphic.vcf.gz 90852551 SNP_biallelic 973787 503 hg19 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 10568305 INDEL_biallelic 67467 503 hg19 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AMR_SNP_biallelic.no_monomorphic.vcf.gz 79880039 SNP_biallelic 1124808 347 hg19 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 9292974 INDEL_biallelic 82696 347 hg19 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EAS_SNP_biallelic.no_monomorphic.vcf.gz 85078784 SNP_biallelic 969451 504 hg19 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 9696670 INDEL_biallelic 60354 504 hg19 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AFR_SNP_biallelic.no_monomorphic.vcf.gz 184707588 SNP_biallelic 1710901 661 hg19 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 18185909 INDEL_biallelic 99985 661 hg19 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_SAS_SNP_biallelic.no_monomorphic.vcf.gz 96096345 SNP_biallelic 1087376 489 hg19 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 10678529 INDEL_biallelic 68485 489 hg19 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1686716 SNP_multiallelic 14375 503 hg19 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 983672 INDEL_multiallelic 3941 503 hg19 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1432346 SNP_multiallelic 14375 347 hg19 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 802461 INDEL_multiallelic 3941 347 hg19 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1614910 SNP_multiallelic 14375 504 hg19 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 951093 INDEL_multiallelic 3941 504 hg19 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2578596 SNP_multiallelic 14375 661 hg19 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1423213 INDEL_multiallelic 3941 661 hg19 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1706236 SNP_multiallelic 14375 489 hg19 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/9/9_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 993628 INDEL_multiallelic 3941 489 hg19 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 489645 INDEL_multiallelic 4603 103 hg19 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 493142 INDEL_multiallelic 4603 99 hg19 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 47070299 SNP_biallelic 1088186 96 hg19 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6100542 INDEL_biallelic 95439 96 hg19 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1015502 SNP_multiallelic 15621 96 hg19 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 534424 INDEL_multiallelic 4603 96 hg19 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4009125 INDEL_biallelic 58122 105 hg19 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4037969 INDEL_biallelic 58551 103 hg19 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 36265454 SNP_biallelic 972708 61 hg19 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4914731 INDEL_biallelic 89472 61 hg19 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 872449 SNP_multiallelic 15621 61 hg19 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 448511 INDEL_multiallelic 4603 61 hg19 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 897796 SNP_multiallelic 15621 103 hg19 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 490245 INDEL_multiallelic 4603 105 hg19 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 28716919 SNP_biallelic 703845 86 hg19 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4242439 INDEL_biallelic 65867 86 hg19 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 884259 SNP_multiallelic 15621 86 hg19 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 475749 INDEL_multiallelic 4603 86 hg19 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4935148 INDEL_biallelic 77187 94 hg19 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 23741435 SNP_biallelic 567726 93 hg19 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3766290 INDEL_biallelic 56510 93 hg19 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 871794 SNP_multiallelic 15621 93 hg19 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 469578 INDEL_multiallelic 4603 93 hg19 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 26263743 SNP_biallelic 614482 103 hg19 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 27969183 SNP_biallelic 639546 99 hg19 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4275341 INDEL_biallelic 62640 99 hg19 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 903502 SNP_multiallelic 15621 99 hg19 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 898015 SNP_multiallelic 15621 105 hg19 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 25382454 SNP_biallelic 589693 105 hg19 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 927424 SNP_multiallelic 15621 102 hg19 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 34260811 SNP_biallelic 811703 94 hg19 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 921960 SNP_multiallelic 15621 94 hg19 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 498663 INDEL_multiallelic 4603 94 hg19 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 49251652 SNP_biallelic 1066490 113 hg19 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 578259 INDEL_multiallelic 4603 113 hg19 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 43867724 SNP_biallelic 988244 99 hg19 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5911974 INDEL_biallelic 89774 99 hg19 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1021495 SNP_multiallelic 15621 99 hg19 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 540506 INDEL_multiallelic 4603 99 hg19 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6397298 INDEL_biallelic 91874 113 hg19 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 512357 INDEL_multiallelic 4603 107 hg19 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4559190 INDEL_biallelic 66299 102 hg19 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 25541298 SNP_biallelic 569501 99 hg19 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4151658 INDEL_biallelic 60522 99 hg19 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 898146 SNP_multiallelic 15621 99 hg19 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 490377 INDEL_multiallelic 4603 99 hg19 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1073819 SNP_multiallelic 15621 113 hg19 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 26007708 SNP_biallelic 603830 91 hg19 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4073473 INDEL_biallelic 61318 91 hg19 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 883997 SNP_multiallelic 15621 91 hg19 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 477161 INDEL_multiallelic 4603 91 hg19 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 933037 SNP_multiallelic 15621 107 hg19 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 31391237 SNP_biallelic 706043 107 hg19 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 29731065 SNP_biallelic 669591 103 hg19 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4501477 INDEL_biallelic 65135 103 hg19 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 927207 SNP_multiallelic 15621 103 hg19 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 506916 INDEL_multiallelic 4603 103 hg19 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4660549 INDEL_biallelic 67536 107 hg19 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 808769 SNP_multiallelic 15621 64 hg19 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 30812762 SNP_biallelic 708038 102 hg19 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 508267 INDEL_multiallelic 4603 102 hg19 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 427505 INDEL_multiallelic 4603 64 hg19 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 25524155 SNP_biallelic 642098 85 hg19 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 24690186 SNP_biallelic 567946 104 hg19 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4000697 INDEL_biallelic 57429 104 hg19 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 896324 SNP_multiallelic 15621 104 hg19 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 491106 INDEL_multiallelic 4603 104 hg19 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 26053844 SNP_biallelic 619293 99 hg19 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4008355 INDEL_biallelic 59133 99 hg19 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 888061 SNP_multiallelic 15621 99 hg19 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 483514 INDEL_multiallelic 4603 99 hg19 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3956057 INDEL_biallelic 63775 85 hg19 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 46929901 SNP_biallelic 1073889 99 hg19 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6013575 INDEL_biallelic 91449 99 hg19 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1023385 SNP_multiallelic 15621 99 hg19 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 541262 INDEL_multiallelic 4603 99 hg19 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 848429 SNP_multiallelic 15621 85 hg19 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 42040808 SNP_biallelic 1015794 85 hg19 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5558154 INDEL_biallelic 90064 85 hg19 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 975915 SNP_multiallelic 15621 85 hg19 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 507005 INDEL_multiallelic 4603 85 hg19 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 457579 INDEL_multiallelic 4603 85 hg19 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 25450243 SNP_biallelic 683749 64 hg19 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3876415 INDEL_biallelic 68481 64 hg19 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 909976 SNP_multiallelic 15621 96 hg19 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 29874625 SNP_biallelic 699915 96 hg19 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4451375 INDEL_biallelic 66483 96 hg19 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 495260 INDEL_multiallelic 4603 96 hg19 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 39301916 SNP_biallelic 900340 104 hg19 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5489932 INDEL_biallelic 83672 104 hg19 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 967329 SNP_multiallelic 15621 104 hg19 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 525314 INDEL_multiallelic 4603 104 hg19 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 30841191 SNP_biallelic 709005 102 hg19 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4555618 INDEL_biallelic 66192 102 hg19 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 927247 SNP_multiallelic 15621 102 hg19 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 507248 INDEL_multiallelic 4603 102 hg19 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 30481055 SNP_biallelic 682874 107 hg19 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4533979 INDEL_biallelic 64629 107 hg19 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 929264 SNP_multiallelic 15621 107 hg19 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 511627 INDEL_multiallelic 4603 107 hg19 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 46681857 SNP_biallelic 1019984 108 hg19 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6228196 INDEL_biallelic 91974 108 hg19 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1054429 SNP_multiallelic 15621 108 hg19 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/pop/10_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 560548 INDEL_multiallelic 4603 108 hg19 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_SAS_SNP_biallelic.no_monomorphic.vcf.gz 109887453 SNP_biallelic 1238359 489 hg19 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12744470 INDEL_biallelic 81380 489 hg19 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EUR_SNP_biallelic.no_monomorphic.vcf.gz 104528344 SNP_biallelic 1114913 503 hg19 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12654069 INDEL_biallelic 80331 503 hg19 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AMR_SNP_biallelic.no_monomorphic.vcf.gz 92309743 SNP_biallelic 1301416 347 hg19 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11139012 INDEL_biallelic 98479 347 hg19 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EAS_SNP_biallelic.no_monomorphic.vcf.gz 96725257 SNP_biallelic 1097742 504 hg19 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11494903 INDEL_biallelic 71703 504 hg19 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AFR_SNP_biallelic.no_monomorphic.vcf.gz 210358372 SNP_biallelic 1938491 661 hg19 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 21483012 INDEL_biallelic 117525 661 hg19 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1854911 SNP_multiallelic 15621 503 hg19 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1181879 INDEL_multiallelic 4603 503 hg19 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1580457 SNP_multiallelic 15621 347 hg19 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 964510 INDEL_multiallelic 4603 347 hg19 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1773603 SNP_multiallelic 15621 504 hg19 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1130134 INDEL_multiallelic 4603 504 hg19 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2803128 SNP_multiallelic 15621 661 hg19 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1691534 INDEL_multiallelic 4603 661 hg19 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1871465 SNP_multiallelic 15621 489 hg19 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/10/10_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1188298 INDEL_multiallelic 4603 489 hg19 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 470468 INDEL_multiallelic 4410 103 hg19 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 475770 INDEL_multiallelic 4410 99 hg19 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 46600934 SNP_biallelic 1078237 96 hg19 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5958746 INDEL_biallelic 94383 96 hg19 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1037319 SNP_multiallelic 16118 96 hg19 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 516016 INDEL_multiallelic 4410 96 hg19 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3816921 INDEL_biallelic 55988 105 hg19 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3831509 INDEL_biallelic 56026 103 hg19 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 36097393 SNP_biallelic 973209 61 hg19 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4811121 INDEL_biallelic 88725 61 hg19 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 890214 SNP_multiallelic 16118 61 hg19 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 432263 INDEL_multiallelic 4410 61 hg19 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 906988 SNP_multiallelic 16118 103 hg19 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 469720 INDEL_multiallelic 4410 105 hg19 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 27847482 SNP_biallelic 688416 86 hg19 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4025590 INDEL_biallelic 63369 86 hg19 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 892803 SNP_multiallelic 16118 86 hg19 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 455297 INDEL_multiallelic 4410 86 hg19 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4821604 INDEL_biallelic 76826 94 hg19 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 23095173 SNP_biallelic 555135 93 hg19 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3578534 INDEL_biallelic 54229 93 hg19 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 881128 SNP_multiallelic 16118 93 hg19 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 451120 INDEL_multiallelic 4410 93 hg19 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 25416685 SNP_biallelic 597049 103 hg19 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 27318172 SNP_biallelic 626619 99 hg19 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4091068 INDEL_biallelic 60621 99 hg19 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 917893 SNP_multiallelic 16118 99 hg19 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 906884 SNP_multiallelic 16118 105 hg19 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 24735291 SNP_biallelic 578679 105 hg19 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 938583 SNP_multiallelic 16118 102 hg19 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 34227630 SNP_biallelic 815440 94 hg19 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 940518 SNP_multiallelic 16118 94 hg19 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 479732 INDEL_multiallelic 4410 94 hg19 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 48525749 SNP_biallelic 1050926 113 hg19 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 556636 INDEL_multiallelic 4410 113 hg19 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 43971367 SNP_biallelic 994280 99 hg19 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5801518 INDEL_biallelic 89278 99 hg19 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1045026 SNP_multiallelic 16118 99 hg19 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 522994 INDEL_multiallelic 4410 99 hg19 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6226300 INDEL_biallelic 90482 113 hg19 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 493907 INDEL_multiallelic 4410 107 hg19 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4323103 INDEL_biallelic 63808 102 hg19 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 24983383 SNP_biallelic 559431 99 hg19 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3977281 INDEL_biallelic 58658 99 hg19 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 912814 SNP_multiallelic 16118 99 hg19 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 473079 INDEL_multiallelic 4410 99 hg19 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1097938 SNP_multiallelic 16118 113 hg19 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 25467806 SNP_biallelic 592953 91 hg19 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3909565 INDEL_biallelic 59515 91 hg19 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 899217 SNP_multiallelic 16118 91 hg19 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 461119 INDEL_multiallelic 4410 91 hg19 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 948242 SNP_multiallelic 16118 107 hg19 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 30596157 SNP_biallelic 690667 107 hg19 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 28830826 SNP_biallelic 654271 103 hg19 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4267853 INDEL_biallelic 62568 103 hg19 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 936711 SNP_multiallelic 16118 103 hg19 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 485852 INDEL_multiallelic 4410 103 hg19 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4456311 INDEL_biallelic 65377 107 hg19 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 814760 SNP_multiallelic 16118 64 hg19 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 29928579 SNP_biallelic 694361 102 hg19 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 486692 INDEL_multiallelic 4410 102 hg19 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 408330 INDEL_multiallelic 4410 64 hg19 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 25938094 SNP_biallelic 659472 85 hg19 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 24052329 SNP_biallelic 555175 104 hg19 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3818427 INDEL_biallelic 55459 104 hg19 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 906583 SNP_multiallelic 16118 104 hg19 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 471999 INDEL_multiallelic 4410 104 hg19 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 25686787 SNP_biallelic 615333 99 hg19 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3838191 INDEL_biallelic 57306 99 hg19 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 899532 SNP_multiallelic 16118 99 hg19 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 465150 INDEL_multiallelic 4410 99 hg19 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3891391 INDEL_biallelic 64065 85 hg19 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 46356924 SNP_biallelic 1063200 99 hg19 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5845901 INDEL_biallelic 90076 99 hg19 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1043997 SNP_multiallelic 16118 99 hg19 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 520798 INDEL_multiallelic 4410 99 hg19 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 863865 SNP_multiallelic 16118 85 hg19 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 41780351 SNP_biallelic 1012451 85 hg19 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5445152 INDEL_biallelic 89453 85 hg19 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 996179 SNP_multiallelic 16118 85 hg19 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 488931 INDEL_multiallelic 4410 85 hg19 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 438790 INDEL_multiallelic 4410 85 hg19 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 23722752 SNP_biallelic 639595 64 hg19 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3611788 INDEL_biallelic 64305 64 hg19 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 921588 SNP_multiallelic 16118 96 hg19 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 29146291 SNP_biallelic 688022 96 hg19 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4237824 INDEL_biallelic 64200 96 hg19 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 475297 INDEL_multiallelic 4410 96 hg19 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 37799917 SNP_biallelic 871088 104 hg19 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5216549 INDEL_biallelic 80603 104 hg19 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 979533 SNP_multiallelic 16118 104 hg19 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 503407 INDEL_multiallelic 4410 104 hg19 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 30030428 SNP_biallelic 696975 102 hg19 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4331429 INDEL_biallelic 63821 102 hg19 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 938359 SNP_multiallelic 16118 102 hg19 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 486437 INDEL_multiallelic 4410 102 hg19 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 29997769 SNP_biallelic 676707 107 hg19 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4353016 INDEL_biallelic 62901 107 hg19 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 943725 SNP_multiallelic 16118 107 hg19 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 492128 INDEL_multiallelic 4410 107 hg19 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 46370262 SNP_biallelic 1015206 108 hg19 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6092917 INDEL_biallelic 91160 108 hg19 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1079188 SNP_multiallelic 16118 108 hg19 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/pop/11_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 543251 INDEL_multiallelic 4410 108 hg19 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_SAS_SNP_biallelic.no_monomorphic.vcf.gz 106752210 SNP_biallelic 1232578 489 hg19 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12067964 INDEL_biallelic 78519 489 hg19 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EUR_SNP_biallelic.no_monomorphic.vcf.gz 102067163 SNP_biallelic 1106400 503 hg19 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12122008 INDEL_biallelic 78091 503 hg19 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AMR_SNP_biallelic.no_monomorphic.vcf.gz 89317950 SNP_biallelic 1290575 347 hg19 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 10667088 INDEL_biallelic 96701 347 hg19 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EAS_SNP_biallelic.no_monomorphic.vcf.gz 94495631 SNP_biallelic 1099626 504 hg19 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 10985577 INDEL_biallelic 69653 504 hg19 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AFR_SNP_biallelic.no_monomorphic.vcf.gz 207350910 SNP_biallelic 1935378 661 hg19 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 20980306 INDEL_biallelic 116376 661 hg19 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1859170 SNP_multiallelic 16118 503 hg19 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1126481 INDEL_multiallelic 4410 503 hg19 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1581309 SNP_multiallelic 16118 347 hg19 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 913485 INDEL_multiallelic 4410 347 hg19 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1765064 SNP_multiallelic 16118 504 hg19 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1070860 INDEL_multiallelic 4410 504 hg19 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2862837 SNP_multiallelic 16118 661 hg19 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1632417 INDEL_multiallelic 4410 661 hg19 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1863825 SNP_multiallelic 16118 489 hg19 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/11/11_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1123990 INDEL_multiallelic 4410 489 hg19 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 529405 INDEL_multiallelic 4966 103 hg19 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 528567 INDEL_multiallelic 4966 99 hg19 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 44423869 SNP_biallelic 1032466 96 hg19 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6143220 INDEL_biallelic 96516 96 hg19 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 957655 SNP_multiallelic 14555 96 hg19 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 573505 INDEL_multiallelic 4966 96 hg19 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4014918 INDEL_biallelic 58242 105 hg19 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4050398 INDEL_biallelic 58834 103 hg19 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 34409131 SNP_biallelic 929512 61 hg19 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4963286 INDEL_biallelic 90893 61 hg19 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 822674 SNP_multiallelic 14555 61 hg19 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 481379 INDEL_multiallelic 4966 61 hg19 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 844152 SNP_multiallelic 14555 103 hg19 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 528914 INDEL_multiallelic 4966 105 hg19 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 27086830 SNP_biallelic 667227 86 hg19 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4253041 INDEL_biallelic 66236 86 hg19 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 831422 SNP_multiallelic 14555 86 hg19 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 511139 INDEL_multiallelic 4966 86 hg19 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4913027 INDEL_biallelic 77154 94 hg19 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 22552049 SNP_biallelic 540218 93 hg19 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3804327 INDEL_biallelic 57116 93 hg19 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 821058 SNP_multiallelic 14555 93 hg19 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 507562 INDEL_multiallelic 4966 93 hg19 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 24805599 SNP_biallelic 581590 103 hg19 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 26345479 SNP_biallelic 606001 99 hg19 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4277117 INDEL_biallelic 62837 99 hg19 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 851365 SNP_multiallelic 14555 99 hg19 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 843033 SNP_multiallelic 14555 105 hg19 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 24039090 SNP_biallelic 560569 105 hg19 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 872688 SNP_multiallelic 14555 102 hg19 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 32004371 SNP_biallelic 762910 94 hg19 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 866925 SNP_multiallelic 14555 94 hg19 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 533157 INDEL_multiallelic 4966 94 hg19 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 46434269 SNP_biallelic 1012378 113 hg19 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 619671 INDEL_multiallelic 4966 113 hg19 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 41642320 SNP_biallelic 943952 99 hg19 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5973927 INDEL_biallelic 91226 99 hg19 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 963302 SNP_multiallelic 14555 99 hg19 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 581532 INDEL_multiallelic 4966 99 hg19 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6428596 INDEL_biallelic 92716 113 hg19 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 549044 INDEL_multiallelic 4966 107 hg19 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4545780 INDEL_biallelic 66173 102 hg19 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 24038759 SNP_biallelic 538224 99 hg19 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4149004 INDEL_biallelic 60559 99 hg19 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 847147 SNP_multiallelic 14555 99 hg19 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 526187 INDEL_multiallelic 4966 99 hg19 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1012833 SNP_multiallelic 14555 113 hg19 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 24350450 SNP_biallelic 568791 91 hg19 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4053862 INDEL_biallelic 61105 91 hg19 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 831550 SNP_multiallelic 14555 91 hg19 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 511886 INDEL_multiallelic 4966 91 hg19 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 877956 SNP_multiallelic 14555 107 hg19 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 29151998 SNP_biallelic 657480 107 hg19 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 27926173 SNP_biallelic 630690 103 hg19 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4490748 INDEL_biallelic 65112 103 hg19 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 872917 SNP_multiallelic 14555 103 hg19 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 543088 INDEL_multiallelic 4966 103 hg19 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4615152 INDEL_biallelic 66794 107 hg19 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 759178 SNP_multiallelic 14555 64 hg19 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 28866272 SNP_biallelic 664877 102 hg19 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 545800 INDEL_multiallelic 4966 102 hg19 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 457123 INDEL_multiallelic 4966 64 hg19 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 25196587 SNP_biallelic 638205 85 hg19 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 23379630 SNP_biallelic 539575 104 hg19 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4027699 INDEL_biallelic 58114 104 hg19 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 843981 SNP_multiallelic 14555 104 hg19 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 530201 INDEL_multiallelic 4966 104 hg19 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 24743963 SNP_biallelic 589588 99 hg19 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4031008 INDEL_biallelic 59535 99 hg19 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 836299 SNP_multiallelic 14555 99 hg19 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 521612 INDEL_multiallelic 4966 99 hg19 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4070903 INDEL_biallelic 66218 85 hg19 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 44460209 SNP_biallelic 1022353 99 hg19 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6065910 INDEL_biallelic 92653 99 hg19 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 965452 SNP_multiallelic 14555 99 hg19 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 581872 INDEL_multiallelic 4966 99 hg19 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 804655 SNP_multiallelic 14555 85 hg19 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 39610293 SNP_biallelic 963387 85 hg19 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5597946 INDEL_biallelic 91229 85 hg19 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 919036 SNP_multiallelic 14555 85 hg19 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 543728 INDEL_multiallelic 4966 85 hg19 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 492211 INDEL_multiallelic 4966 85 hg19 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 23560677 SNP_biallelic 637163 64 hg19 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3837765 INDEL_biallelic 68097 64 hg19 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 858429 SNP_multiallelic 14555 96 hg19 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 28309694 SNP_biallelic 666705 96 hg19 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4472872 INDEL_biallelic 67163 96 hg19 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 532544 INDEL_multiallelic 4966 96 hg19 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 36633909 SNP_biallelic 844674 104 hg19 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5447257 INDEL_biallelic 83379 104 hg19 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 908340 SNP_multiallelic 14555 104 hg19 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 561920 INDEL_multiallelic 4966 104 hg19 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 28929539 SNP_biallelic 667237 102 hg19 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4543549 INDEL_biallelic 66061 102 hg19 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 873475 SNP_multiallelic 14555 102 hg19 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 545978 INDEL_multiallelic 4966 102 hg19 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 28775975 SNP_biallelic 648142 107 hg19 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4535496 INDEL_biallelic 64681 107 hg19 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 876865 SNP_multiallelic 14555 107 hg19 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 549195 INDEL_multiallelic 4966 107 hg19 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 44135516 SNP_biallelic 970128 108 hg19 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6273456 INDEL_biallelic 93160 108 hg19 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 993733 SNP_multiallelic 14555 108 hg19 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/pop/12_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 602811 INDEL_multiallelic 4966 108 hg19 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_SAS_SNP_biallelic.no_monomorphic.vcf.gz 104166243 SNP_biallelic 1183479 489 hg19 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12761848 INDEL_biallelic 81874 489 hg19 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EUR_SNP_biallelic.no_monomorphic.vcf.gz 98732990 SNP_biallelic 1060239 503 hg19 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12635150 INDEL_biallelic 80331 503 hg19 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AMR_SNP_biallelic.no_monomorphic.vcf.gz 87369950 SNP_biallelic 1239678 347 hg19 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11142521 INDEL_biallelic 99134 347 hg19 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EAS_SNP_biallelic.no_monomorphic.vcf.gz 92021842 SNP_biallelic 1049483 504 hg19 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11575851 INDEL_biallelic 72465 504 hg19 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AFR_SNP_biallelic.no_monomorphic.vcf.gz 199777076 SNP_biallelic 1849831 661 hg19 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 21727400 INDEL_biallelic 119166 661 hg19 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1744316 SNP_multiallelic 14555 503 hg19 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1268389 INDEL_multiallelic 4966 503 hg19 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1483698 SNP_multiallelic 14555 347 hg19 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1031375 INDEL_multiallelic 4966 347 hg19 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1664476 SNP_multiallelic 14555 504 hg19 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1226574 INDEL_multiallelic 4966 504 hg19 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2650337 SNP_multiallelic 14555 661 hg19 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1817839 INDEL_multiallelic 4966 661 hg19 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1758345 SNP_multiallelic 14555 489 hg19 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/12/12_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1279518 INDEL_multiallelic 4966 489 hg19 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 384424 INDEL_multiallelic 3565 103 hg19 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 386079 INDEL_multiallelic 3565 99 hg19 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 33375767 SNP_biallelic 774527 96 hg19 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4679931 INDEL_biallelic 74203 96 hg19 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 716018 SNP_multiallelic 10775 96 hg19 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 417487 INDEL_multiallelic 3565 96 hg19 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3020674 INDEL_biallelic 44451 105 hg19 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3044758 INDEL_biallelic 44863 103 hg19 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 25746971 SNP_biallelic 694910 61 hg19 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3780875 INDEL_biallelic 69691 61 hg19 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 614501 SNP_multiallelic 10775 61 hg19 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 349519 INDEL_multiallelic 3565 61 hg19 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 626419 SNP_multiallelic 10775 103 hg19 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 384196 INDEL_multiallelic 3565 105 hg19 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 20447903 SNP_biallelic 504951 86 hg19 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3225676 INDEL_biallelic 50871 86 hg19 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 616061 SNP_multiallelic 10775 86 hg19 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 372333 INDEL_multiallelic 3565 86 hg19 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3735652 INDEL_biallelic 59046 94 hg19 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 16916191 SNP_biallelic 407713 93 hg19 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2847094 INDEL_biallelic 43316 93 hg19 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 609014 SNP_multiallelic 10775 93 hg19 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 368591 INDEL_multiallelic 3565 93 hg19 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 18625441 SNP_biallelic 439703 103 hg19 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 20093217 SNP_biallelic 461974 99 hg19 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3249472 INDEL_biallelic 48080 99 hg19 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 634208 SNP_multiallelic 10775 99 hg19 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 625899 SNP_multiallelic 10775 105 hg19 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 18074709 SNP_biallelic 424431 105 hg19 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 646761 SNP_multiallelic 10775 102 hg19 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 24052193 SNP_biallelic 570713 94 hg19 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 645992 SNP_multiallelic 10775 94 hg19 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 388175 INDEL_multiallelic 3565 94 hg19 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 35152192 SNP_biallelic 764056 113 hg19 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 450399 INDEL_multiallelic 3565 113 hg19 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 31374439 SNP_biallelic 710387 99 hg19 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4562254 INDEL_biallelic 70338 99 hg19 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 722586 SNP_multiallelic 10775 99 hg19 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 422551 INDEL_multiallelic 3565 99 hg19 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4933283 INDEL_biallelic 71902 113 hg19 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 400730 INDEL_multiallelic 3565 107 hg19 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3440683 INDEL_biallelic 50728 102 hg19 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 18329357 SNP_biallelic 411277 99 hg19 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3163258 INDEL_biallelic 46611 99 hg19 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 631851 SNP_multiallelic 10775 99 hg19 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 384564 INDEL_multiallelic 3565 99 hg19 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 759597 SNP_multiallelic 10775 113 hg19 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 18553409 SNP_biallelic 433211 91 hg19 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3088233 INDEL_biallelic 46936 91 hg19 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 620706 SNP_multiallelic 10775 91 hg19 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 373853 INDEL_multiallelic 3565 91 hg19 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 654511 SNP_multiallelic 10775 107 hg19 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 22414385 SNP_biallelic 506101 107 hg19 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 21159155 SNP_biallelic 479478 103 hg19 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3415669 INDEL_biallelic 50120 103 hg19 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 648413 SNP_multiallelic 10775 103 hg19 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 397215 INDEL_multiallelic 3565 103 hg19 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3550879 INDEL_biallelic 52099 107 hg19 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 564733 SNP_multiallelic 10775 64 hg19 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 21832373 SNP_biallelic 504960 102 hg19 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 397929 INDEL_multiallelic 3565 102 hg19 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 331978 INDEL_multiallelic 3565 64 hg19 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 18824388 SNP_biallelic 475405 85 hg19 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 17584466 SNP_biallelic 407894 104 hg19 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3012650 INDEL_biallelic 44044 104 hg19 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 624629 SNP_multiallelic 10775 104 hg19 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 385311 INDEL_multiallelic 3565 104 hg19 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 18503635 SNP_biallelic 442967 99 hg19 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3023676 INDEL_biallelic 45238 99 hg19 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 620424 SNP_multiallelic 10775 99 hg19 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 379198 INDEL_multiallelic 3565 99 hg19 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3083535 INDEL_biallelic 50443 85 hg19 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 33253102 SNP_biallelic 762592 99 hg19 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4625181 INDEL_biallelic 71275 99 hg19 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 722706 SNP_multiallelic 10775 99 hg19 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 423239 INDEL_multiallelic 3565 99 hg19 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 599831 SNP_multiallelic 10775 85 hg19 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 29995614 SNP_biallelic 729011 85 hg19 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4290696 INDEL_biallelic 70576 85 hg19 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 688869 SNP_multiallelic 10775 85 hg19 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 395241 INDEL_multiallelic 3565 85 hg19 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 359318 INDEL_multiallelic 3565 85 hg19 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 17460854 SNP_biallelic 470686 64 hg19 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2884085 INDEL_biallelic 51238 64 hg19 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 637253 SNP_multiallelic 10775 96 hg19 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 21481095 SNP_biallelic 506816 96 hg19 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3399922 INDEL_biallelic 51501 96 hg19 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 388809 INDEL_multiallelic 3565 96 hg19 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 27616064 SNP_biallelic 634142 104 hg19 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4166844 INDEL_biallelic 64241 104 hg19 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 677366 SNP_multiallelic 10775 104 hg19 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 409775 INDEL_multiallelic 3565 104 hg19 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 22010806 SNP_biallelic 509992 102 hg19 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3461836 INDEL_biallelic 51026 102 hg19 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 647915 SNP_multiallelic 10775 102 hg19 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 398267 INDEL_multiallelic 3565 102 hg19 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 21695713 SNP_biallelic 488003 107 hg19 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3432418 INDEL_biallelic 49431 107 hg19 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 651945 SNP_multiallelic 10775 107 hg19 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 400348 INDEL_multiallelic 3565 107 hg19 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 33295530 SNP_biallelic 730542 108 hg19 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4791100 INDEL_biallelic 71796 108 hg19 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 745954 SNP_multiallelic 10775 108 hg19 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/pop/13_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 439412 INDEL_multiallelic 3565 108 hg19 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_SAS_SNP_biallelic.no_monomorphic.vcf.gz 78481776 SNP_biallelic 885739 489 hg19 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 9671548 INDEL_biallelic 63020 489 hg19 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EUR_SNP_biallelic.no_monomorphic.vcf.gz 74970062 SNP_biallelic 795573 503 hg19 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 9621724 INDEL_biallelic 61930 503 hg19 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AMR_SNP_biallelic.no_monomorphic.vcf.gz 65473487 SNP_biallelic 919624 347 hg19 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 8469479 INDEL_biallelic 76328 347 hg19 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EAS_SNP_biallelic.no_monomorphic.vcf.gz 68903656 SNP_biallelic 783338 504 hg19 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 8677208 INDEL_biallelic 55319 504 hg19 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AFR_SNP_biallelic.no_monomorphic.vcf.gz 150176849 SNP_biallelic 1371294 661 hg19 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 16585057 INDEL_biallelic 91600 661 hg19 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1305918 SNP_multiallelic 10775 503 hg19 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 927438 INDEL_multiallelic 3565 503 hg19 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1110317 SNP_multiallelic 10775 347 hg19 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 753400 INDEL_multiallelic 3565 347 hg19 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1235497 SNP_multiallelic 10775 504 hg19 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 892642 INDEL_multiallelic 3565 504 hg19 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2002887 SNP_multiallelic 10775 661 hg19 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1326206 INDEL_multiallelic 3565 661 hg19 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1306955 SNP_multiallelic 10775 489 hg19 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/13/13_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 936947 INDEL_multiallelic 3565 489 hg19 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 606351 SNP_multiallelic 10487 99 hg19 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 601504 SNP_multiallelic 10487 105 hg19 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 30842376 SNP_biallelic 708655 96 hg19 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4180992 INDEL_biallelic 65709 96 hg19 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 682928 SNP_multiallelic 10487 96 hg19 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 357127 INDEL_multiallelic 3056 96 hg19 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 327713 INDEL_multiallelic 3056 103 hg19 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 328538 INDEL_multiallelic 3056 99 hg19 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 23756385 SNP_biallelic 633169 61 hg19 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3364092 INDEL_biallelic 61477 61 hg19 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 587225 SNP_multiallelic 10487 61 hg19 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 299680 INDEL_multiallelic 3056 61 hg19 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2716275 INDEL_biallelic 39686 105 hg19 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2748965 INDEL_biallelic 40236 103 hg19 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18678397 SNP_biallelic 455227 86 hg19 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2868553 INDEL_biallelic 44754 86 hg19 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 592423 SNP_multiallelic 10487 86 hg19 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 316809 INDEL_multiallelic 3056 86 hg19 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 602205 SNP_multiallelic 10487 103 hg19 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 327655 INDEL_multiallelic 3056 105 hg19 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15582677 SNP_biallelic 370108 93 hg19 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2568988 INDEL_biallelic 38743 93 hg19 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 585794 SNP_multiallelic 10487 93 hg19 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 314681 INDEL_multiallelic 3056 93 hg19 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3381939 INDEL_biallelic 53413 94 hg19 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18151972 SNP_biallelic 413280 99 hg19 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2883497 INDEL_biallelic 42433 99 hg19 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 17208030 SNP_biallelic 401077 103 hg19 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16568089 SNP_biallelic 383735 105 hg19 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22616472 SNP_biallelic 534909 94 hg19 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 619391 SNP_multiallelic 10487 94 hg19 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 332065 INDEL_multiallelic 3056 94 hg19 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 28808606 SNP_biallelic 644989 99 hg19 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4043141 INDEL_biallelic 61542 99 hg19 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 687372 SNP_multiallelic 10487 99 hg19 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 361772 INDEL_multiallelic 3056 99 hg19 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 32223899 SNP_biallelic 694290 113 hg19 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16603825 SNP_biallelic 368243 99 hg19 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2811902 INDEL_biallelic 41224 99 hg19 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 603269 SNP_multiallelic 10487 99 hg19 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 325706 INDEL_multiallelic 3056 99 hg19 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4379324 INDEL_biallelic 63238 113 hg19 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 340146 INDEL_multiallelic 3056 107 hg19 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 619997 SNP_multiallelic 10487 102 hg19 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 17011365 SNP_biallelic 393057 91 hg19 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2764367 INDEL_biallelic 41889 91 hg19 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 592113 SNP_multiallelic 10487 91 hg19 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 317627 INDEL_multiallelic 3056 91 hg19 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 20102641 SNP_biallelic 448079 107 hg19 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 19263206 SNP_biallelic 430108 103 hg19 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3039639 INDEL_biallelic 44149 103 hg19 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 620876 SNP_multiallelic 10487 103 hg19 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 337932 INDEL_multiallelic 3056 103 hg19 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 722025 SNP_multiallelic 10487 113 hg19 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 385133 INDEL_multiallelic 3056 113 hg19 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3067486 INDEL_biallelic 44883 102 hg19 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3116208 INDEL_biallelic 45190 107 hg19 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 623734 SNP_multiallelic 10487 107 hg19 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 572192 SNP_multiallelic 10487 85 hg19 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19883838 SNP_biallelic 453716 102 hg19 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 337796 INDEL_multiallelic 3056 102 hg19 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 304093 INDEL_multiallelic 3056 85 hg19 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 16181165 SNP_biallelic 370312 104 hg19 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2722162 INDEL_biallelic 39423 104 hg19 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 602579 SNP_multiallelic 10487 104 hg19 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 328463 INDEL_multiallelic 3056 104 hg19 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 330213 INDEL_multiallelic 3056 96 hg19 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 16975536 SNP_biallelic 401741 99 hg19 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2708234 INDEL_biallelic 40228 99 hg19 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 595854 SNP_multiallelic 10487 99 hg19 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 323070 INDEL_multiallelic 3056 99 hg19 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 31110620 SNP_biallelic 709206 99 hg19 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4140390 INDEL_biallelic 63358 99 hg19 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 688944 SNP_multiallelic 10487 99 hg19 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 362291 INDEL_multiallelic 3056 99 hg19 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27641950 SNP_biallelic 663910 85 hg19 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3816340 INDEL_biallelic 62111 85 hg19 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 655497 SNP_multiallelic 10487 85 hg19 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 339041 INDEL_multiallelic 3056 85 hg19 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 17470404 SNP_biallelic 440337 85 hg19 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 16001544 SNP_biallelic 427765 64 hg19 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2563482 INDEL_biallelic 45526 64 hg19 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 540782 SNP_multiallelic 10487 64 hg19 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 282808 INDEL_multiallelic 3056 64 hg19 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2761191 INDEL_biallelic 45391 85 hg19 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 19540884 SNP_biallelic 455516 96 hg19 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3023367 INDEL_biallelic 45512 96 hg19 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 610190 SNP_multiallelic 10487 96 hg19 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 24960291 SNP_biallelic 571344 104 hg19 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3664252 INDEL_biallelic 56285 104 hg19 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 643807 SNP_multiallelic 10487 104 hg19 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 346742 INDEL_multiallelic 3056 104 hg19 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 19997638 SNP_biallelic 456585 102 hg19 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3079937 INDEL_biallelic 44913 102 hg19 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 620805 SNP_multiallelic 10487 102 hg19 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 338236 INDEL_multiallelic 3056 102 hg19 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 20035543 SNP_biallelic 447224 107 hg19 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3081948 INDEL_biallelic 44213 107 hg19 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 623311 SNP_multiallelic 10487 107 hg19 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 340798 INDEL_multiallelic 3056 107 hg19 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 30485356 SNP_biallelic 662250 108 hg19 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4251762 INDEL_biallelic 62959 108 hg19 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 708539 SNP_multiallelic 10487 108 hg19 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/pop/14_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 374852 INDEL_multiallelic 3056 108 hg19 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_SAS_SNP_biallelic.no_monomorphic.vcf.gz 71517944 SNP_biallelic 812029 489 hg19 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 8647717 INDEL_biallelic 55682 489 hg19 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EUR_SNP_biallelic.no_monomorphic.vcf.gz 67533638 SNP_biallelic 723297 503 hg19 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8515956 INDEL_biallelic 54044 503 hg19 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AMR_SNP_biallelic.no_monomorphic.vcf.gz 59784035 SNP_biallelic 848281 347 hg19 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7528384 INDEL_biallelic 67297 347 hg19 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EAS_SNP_biallelic.no_monomorphic.vcf.gz 63426837 SNP_biallelic 721286 504 hg19 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7858329 INDEL_biallelic 49171 504 hg19 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AFR_SNP_biallelic.no_monomorphic.vcf.gz 137466536 SNP_biallelic 1272705 661 hg19 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 14743823 INDEL_biallelic 80865 661 hg19 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1233854 SNP_multiallelic 10487 503 hg19 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 781487 INDEL_multiallelic 3056 503 hg19 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1051887 SNP_multiallelic 10487 347 hg19 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 634655 INDEL_multiallelic 3056 347 hg19 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1184147 SNP_multiallelic 10487 504 hg19 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 755701 INDEL_multiallelic 3056 504 hg19 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1878947 SNP_multiallelic 10487 661 hg19 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1126027 INDEL_multiallelic 3056 661 hg19 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1245626 SNP_multiallelic 10487 489 hg19 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/14/14_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 787813 INDEL_multiallelic 3056 489 hg19 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 536960 SNP_multiallelic 9386 99 hg19 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 534361 SNP_multiallelic 9386 105 hg19 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 28687533 SNP_biallelic 648932 96 hg19 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3821803 INDEL_biallelic 58973 96 hg19 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 612541 SNP_multiallelic 9386 96 hg19 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 319704 INDEL_multiallelic 2750 96 hg19 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 289927 INDEL_multiallelic 2750 103 hg19 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 289972 INDEL_multiallelic 2750 99 hg19 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 22160569 SNP_biallelic 580470 61 hg19 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3078879 INDEL_biallelic 55477 61 hg19 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 525795 SNP_multiallelic 9386 61 hg19 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 267502 INDEL_multiallelic 2750 61 hg19 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2491997 INDEL_biallelic 35624 105 hg19 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2504775 INDEL_biallelic 35740 103 hg19 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 17122461 SNP_biallelic 409671 86 hg19 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2606393 INDEL_biallelic 39973 86 hg19 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 525723 SNP_multiallelic 9386 86 hg19 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 280714 INDEL_multiallelic 2750 86 hg19 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 535252 SNP_multiallelic 9386 103 hg19 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 290294 INDEL_multiallelic 2750 105 hg19 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 14484519 SNP_biallelic 335798 93 hg19 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2346590 INDEL_biallelic 34665 93 hg19 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 520320 SNP_multiallelic 9386 93 hg19 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 278517 INDEL_multiallelic 2750 93 hg19 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2996262 INDEL_biallelic 46283 94 hg19 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 16407505 SNP_biallelic 365666 99 hg19 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2601922 INDEL_biallelic 37620 99 hg19 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 15935006 SNP_biallelic 362428 103 hg19 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 15452093 SNP_biallelic 349359 105 hg19 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 20001287 SNP_biallelic 462553 94 hg19 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 548435 SNP_multiallelic 9386 94 hg19 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 293762 INDEL_multiallelic 2750 94 hg19 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 26712658 SNP_biallelic 586922 99 hg19 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3708765 INDEL_biallelic 55476 99 hg19 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 615948 SNP_multiallelic 9386 99 hg19 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 323138 INDEL_multiallelic 2750 99 hg19 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 29964380 SNP_biallelic 634540 113 hg19 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 15118654 SNP_biallelic 327151 99 hg19 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2540858 INDEL_biallelic 36499 99 hg19 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 535413 SNP_multiallelic 9386 99 hg19 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 288836 INDEL_multiallelic 2750 99 hg19 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4007810 INDEL_biallelic 56812 113 hg19 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 301808 INDEL_multiallelic 2750 107 hg19 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 551569 SNP_multiallelic 9386 102 hg19 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 15323562 SNP_biallelic 346043 91 hg19 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2494024 INDEL_biallelic 37018 91 hg19 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 526532 SNP_multiallelic 9386 91 hg19 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 282239 INDEL_multiallelic 2750 91 hg19 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 18455942 SNP_biallelic 405766 107 hg19 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 17477686 SNP_biallelic 382451 103 hg19 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2737912 INDEL_biallelic 38973 103 hg19 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 550694 SNP_multiallelic 9386 103 hg19 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 298907 INDEL_multiallelic 2750 103 hg19 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 647929 SNP_multiallelic 9386 113 hg19 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 344229 INDEL_multiallelic 2750 113 hg19 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2779987 INDEL_biallelic 39862 102 hg19 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2837412 INDEL_biallelic 40544 107 hg19 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 553343 SNP_multiallelic 9386 107 hg19 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 510037 SNP_multiallelic 9386 85 hg19 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 18243010 SNP_biallelic 409245 102 hg19 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 299792 INDEL_multiallelic 2750 102 hg19 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 271787 INDEL_multiallelic 2750 85 hg19 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15092424 SNP_biallelic 337415 104 hg19 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2491541 INDEL_biallelic 35209 104 hg19 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 535589 SNP_multiallelic 9386 104 hg19 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 291444 INDEL_multiallelic 2750 104 hg19 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 292909 INDEL_multiallelic 2750 96 hg19 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 15801480 SNP_biallelic 365139 99 hg19 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2485640 INDEL_biallelic 36030 99 hg19 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 530590 SNP_multiallelic 9386 99 hg19 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 285640 INDEL_multiallelic 2750 99 hg19 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 28800101 SNP_biallelic 644869 99 hg19 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3787274 INDEL_biallelic 56918 99 hg19 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 617214 SNP_multiallelic 9386 99 hg19 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 323330 INDEL_multiallelic 2750 99 hg19 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 25775614 SNP_biallelic 609356 85 hg19 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3502922 INDEL_biallelic 56225 85 hg19 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 588245 SNP_multiallelic 9386 85 hg19 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 302798 INDEL_multiallelic 2750 85 hg19 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 15698990 SNP_biallelic 384469 85 hg19 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 14457586 SNP_biallelic 375551 64 hg19 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2294480 INDEL_biallelic 39681 64 hg19 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 480135 SNP_multiallelic 9386 64 hg19 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 252019 INDEL_multiallelic 2750 64 hg19 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2479054 INDEL_biallelic 39528 85 hg19 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 17771591 SNP_biallelic 406441 96 hg19 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2725415 INDEL_biallelic 40170 96 hg19 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 542094 SNP_multiallelic 9386 96 hg19 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 22703824 SNP_biallelic 509986 104 hg19 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3310116 INDEL_biallelic 49897 104 hg19 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 573253 SNP_multiallelic 9386 104 hg19 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 308680 INDEL_multiallelic 2750 104 hg19 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 18154730 SNP_biallelic 406402 102 hg19 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2782642 INDEL_biallelic 39757 102 hg19 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 551952 SNP_multiallelic 9386 102 hg19 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 299812 INDEL_multiallelic 2750 102 hg19 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 17978058 SNP_biallelic 394138 107 hg19 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2762067 INDEL_biallelic 38800 107 hg19 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 551968 SNP_multiallelic 9386 107 hg19 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 301516 INDEL_multiallelic 2750 107 hg19 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 28355827 SNP_biallelic 605855 108 hg19 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3899407 INDEL_biallelic 56901 108 hg19 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 635736 SNP_multiallelic 9386 108 hg19 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/pop/15_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 334407 INDEL_multiallelic 2750 108 hg19 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EUR_SNP_biallelic.no_monomorphic.vcf.gz 60511429 SNP_biallelic 654279 503 hg19 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7654209 INDEL_biallelic 48528 503 hg19 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AMR_SNP_biallelic.no_monomorphic.vcf.gz 53491105 SNP_biallelic 753581 347 hg19 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6752290 INDEL_biallelic 59516 347 hg19 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EAS_SNP_biallelic.no_monomorphic.vcf.gz 57694484 SNP_biallelic 660926 504 hg19 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7097882 INDEL_biallelic 43925 504 hg19 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AFR_SNP_biallelic.no_monomorphic.vcf.gz 125960565 SNP_biallelic 1163237 661 hg19 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13411040 INDEL_biallelic 72718 661 hg19 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_SAS_SNP_biallelic.no_monomorphic.vcf.gz 64314251 SNP_biallelic 734701 489 hg19 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7771521 INDEL_biallelic 49655 489 hg19 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1087769 SNP_multiallelic 9386 503 hg19 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 685672 INDEL_multiallelic 2750 503 hg19 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 931764 SNP_multiallelic 9386 347 hg19 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 562267 INDEL_multiallelic 2750 347 hg19 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1049152 SNP_multiallelic 9386 504 hg19 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 662185 INDEL_multiallelic 2750 504 hg19 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1693762 SNP_multiallelic 9386 661 hg19 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1004093 INDEL_multiallelic 2750 661 hg19 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1104053 SNP_multiallelic 9386 489 hg19 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/15/15_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 693336 INDEL_multiallelic 2750 489 hg19 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 283394 INDEL_multiallelic 2703 103 hg19 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 286383 INDEL_multiallelic 2703 99 hg19 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 31151825 SNP_biallelic 705542 96 hg19 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3617306 INDEL_biallelic 55249 96 hg19 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 787648 SNP_multiallelic 12431 96 hg19 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 313734 INDEL_multiallelic 2703 96 hg19 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2368769 INDEL_biallelic 33204 105 hg19 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2379645 INDEL_biallelic 33336 103 hg19 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 23925753 SNP_biallelic 624959 61 hg19 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2900577 INDEL_biallelic 51495 61 hg19 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 676069 SNP_multiallelic 12431 61 hg19 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 263347 INDEL_multiallelic 2703 61 hg19 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 686302 SNP_multiallelic 12431 103 hg19 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 284279 INDEL_multiallelic 2703 105 hg19 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18522974 SNP_biallelic 441250 86 hg19 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2476175 INDEL_biallelic 37314 86 hg19 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 674667 SNP_multiallelic 12431 86 hg19 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 275154 INDEL_multiallelic 2703 86 hg19 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2917487 INDEL_biallelic 44562 94 hg19 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15662960 SNP_biallelic 360773 93 hg19 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2244243 INDEL_biallelic 32420 93 hg19 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 669066 SNP_multiallelic 12431 93 hg19 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 274054 INDEL_multiallelic 2703 93 hg19 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16924782 SNP_biallelic 382687 103 hg19 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18066890 SNP_biallelic 400627 99 hg19 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2527528 INDEL_biallelic 35930 99 hg19 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 691494 SNP_multiallelic 12431 99 hg19 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 685601 SNP_multiallelic 12431 105 hg19 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16463303 SNP_biallelic 369729 105 hg19 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 707401 SNP_multiallelic 12431 102 hg19 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22464320 SNP_biallelic 520142 94 hg19 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 707121 SNP_multiallelic 12431 94 hg19 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 288163 INDEL_multiallelic 2703 94 hg19 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 32464479 SNP_biallelic 689956 113 hg19 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 338525 INDEL_multiallelic 2703 113 hg19 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 29307186 SNP_biallelic 645727 99 hg19 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3533179 INDEL_biallelic 52348 99 hg19 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 795703 SNP_multiallelic 12431 99 hg19 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 318843 INDEL_multiallelic 2703 99 hg19 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3793135 INDEL_biallelic 53071 113 hg19 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 296833 INDEL_multiallelic 2703 107 hg19 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2664562 INDEL_biallelic 37523 102 hg19 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16465380 SNP_biallelic 352831 99 hg19 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2462913 INDEL_biallelic 34781 99 hg19 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 688807 SNP_multiallelic 12431 99 hg19 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 284257 INDEL_multiallelic 2703 99 hg19 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 833382 SNP_multiallelic 12431 113 hg19 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16915460 SNP_biallelic 379521 91 hg19 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2410546 INDEL_biallelic 35177 91 hg19 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 676670 SNP_multiallelic 12431 91 hg19 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 277014 INDEL_multiallelic 2703 91 hg19 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 712796 SNP_multiallelic 12431 107 hg19 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 20649294 SNP_biallelic 454369 107 hg19 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 19313125 SNP_biallelic 421774 103 hg19 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2656140 INDEL_biallelic 37243 103 hg19 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 709375 SNP_multiallelic 12431 103 hg19 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 293439 INDEL_multiallelic 2703 103 hg19 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2771127 INDEL_biallelic 39146 107 hg19 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 615804 SNP_multiallelic 12431 64 hg19 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19861108 SNP_biallelic 443512 102 hg19 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 293399 INDEL_multiallelic 2703 102 hg19 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 246639 INDEL_multiallelic 2703 64 hg19 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 16640227 SNP_biallelic 407132 85 hg19 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 16203145 SNP_biallelic 360160 104 hg19 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2392913 INDEL_biallelic 33314 104 hg19 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 686476 SNP_multiallelic 12431 104 hg19 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 285088 INDEL_multiallelic 2703 104 hg19 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 16982745 SNP_biallelic 389961 99 hg19 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2373196 INDEL_biallelic 33760 99 hg19 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 680474 SNP_multiallelic 12431 99 hg19 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 281277 INDEL_multiallelic 2703 99 hg19 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2332844 INDEL_biallelic 36664 85 hg19 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 31197878 SNP_biallelic 698131 99 hg19 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3598840 INDEL_biallelic 53428 99 hg19 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 797107 SNP_multiallelic 12431 99 hg19 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 318331 INDEL_multiallelic 2703 99 hg19 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 650498 SNP_multiallelic 12431 85 hg19 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27939053 SNP_biallelic 660409 85 hg19 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3304745 INDEL_biallelic 52273 85 hg19 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 758556 SNP_multiallelic 12431 85 hg19 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 298343 INDEL_multiallelic 2703 85 hg19 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 263985 INDEL_multiallelic 2703 85 hg19 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 15791857 SNP_biallelic 408636 64 hg19 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2202588 INDEL_biallelic 37610 64 hg19 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 696686 SNP_multiallelic 12431 96 hg19 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 19452549 SNP_biallelic 443503 96 hg19 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2619298 INDEL_biallelic 38041 96 hg19 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 287100 INDEL_multiallelic 2703 96 hg19 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 25301020 SNP_biallelic 568903 104 hg19 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3209294 INDEL_biallelic 47763 104 hg19 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 738161 SNP_multiallelic 12431 104 hg19 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 303581 INDEL_multiallelic 2703 104 hg19 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 19919201 SNP_biallelic 445697 102 hg19 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2667161 INDEL_biallelic 37611 102 hg19 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 707829 SNP_multiallelic 12431 102 hg19 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 293448 INDEL_multiallelic 2703 102 hg19 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 19965213 SNP_biallelic 436543 107 hg19 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2696922 INDEL_biallelic 37363 107 hg19 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 710488 SNP_multiallelic 12431 107 hg19 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 296706 INDEL_multiallelic 2703 107 hg19 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 31022828 SNP_biallelic 662960 108 hg19 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3711220 INDEL_biallelic 53429 108 hg19 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 820650 SNP_multiallelic 12431 108 hg19 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/pop/16_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 330226 INDEL_multiallelic 2703 108 hg19 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_SAS_SNP_biallelic.no_monomorphic.vcf.gz 70202539 SNP_biallelic 814535 489 hg19 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EUR_SNP_biallelic.no_monomorphic.vcf.gz 66885076 SNP_biallelic 731438 503 hg19 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7452687 INDEL_biallelic 46781 503 hg19 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AMR_SNP_biallelic.no_monomorphic.vcf.gz 59066988 SNP_biallelic 845895 347 hg19 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6498474 INDEL_biallelic 56744 347 hg19 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EAS_SNP_biallelic.no_monomorphic.vcf.gz 61985968 SNP_biallelic 724111 504 hg19 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6775545 INDEL_biallelic 41596 504 hg19 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AFR_SNP_biallelic.no_monomorphic.vcf.gz 137117664 SNP_biallelic 1286115 661 hg19 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 12675163 INDEL_biallelic 68165 661 hg19 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7437231 INDEL_biallelic 46965 489 hg19 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1401832 SNP_multiallelic 12431 503 hg19 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 673881 INDEL_multiallelic 2703 503 hg19 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1196308 SNP_multiallelic 12431 347 hg19 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 547390 INDEL_multiallelic 2703 347 hg19 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1342157 SNP_multiallelic 12431 504 hg19 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 645980 INDEL_multiallelic 2703 504 hg19 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2180661 SNP_multiallelic 12431 661 hg19 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 986646 INDEL_multiallelic 2703 661 hg19 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1412222 SNP_multiallelic 12431 489 hg19 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/16/16_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 674797 INDEL_multiallelic 2703 489 hg19 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 512857 SNP_multiallelic 9001 99 hg19 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 507132 SNP_multiallelic 9001 105 hg19 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 27011604 SNP_biallelic 615961 96 hg19 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3839358 INDEL_biallelic 58640 96 hg19 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 586440 SNP_multiallelic 9001 96 hg19 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 323272 INDEL_multiallelic 2793 96 hg19 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 288300 INDEL_multiallelic 2793 103 hg19 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 291131 INDEL_multiallelic 2793 99 hg19 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 20661287 SNP_biallelic 543815 61 hg19 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3077126 INDEL_biallelic 54859 61 hg19 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 502709 SNP_multiallelic 9001 61 hg19 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 270721 INDEL_multiallelic 2793 61 hg19 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2476734 INDEL_biallelic 35180 105 hg19 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2476475 INDEL_biallelic 35067 103 hg19 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 15733901 SNP_biallelic 379957 86 hg19 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2590833 INDEL_biallelic 39381 86 hg19 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 498175 SNP_multiallelic 9001 86 hg19 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 280584 INDEL_multiallelic 2793 86 hg19 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 507765 SNP_multiallelic 9001 103 hg19 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 288371 INDEL_multiallelic 2793 105 hg19 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 13120719 SNP_biallelic 306900 93 hg19 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2320922 INDEL_biallelic 33965 93 hg19 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 493239 SNP_multiallelic 9001 93 hg19 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 277583 INDEL_multiallelic 2793 93 hg19 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3077758 INDEL_biallelic 47253 94 hg19 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 15380164 SNP_biallelic 345660 99 hg19 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2647172 INDEL_biallelic 37925 99 hg19 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 14375520 SNP_biallelic 330452 103 hg19 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 13973127 SNP_biallelic 319184 105 hg19 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 19196132 SNP_biallelic 448720 94 hg19 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 525371 SNP_multiallelic 9001 94 hg19 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 295455 INDEL_multiallelic 2793 94 hg19 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 25086867 SNP_biallelic 555021 99 hg19 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3739499 INDEL_biallelic 55424 99 hg19 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 590787 SNP_multiallelic 9001 99 hg19 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 327589 INDEL_multiallelic 2793 99 hg19 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 28007918 SNP_biallelic 598187 113 hg19 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 14047874 SNP_biallelic 306178 99 hg19 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2581003 INDEL_biallelic 36761 99 hg19 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 511095 SNP_multiallelic 9001 99 hg19 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 289842 INDEL_multiallelic 2793 99 hg19 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4024770 INDEL_biallelic 56410 113 hg19 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 302546 INDEL_multiallelic 2793 107 hg19 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 522982 SNP_multiallelic 9001 102 hg19 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 14264739 SNP_biallelic 324642 91 hg19 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2521112 INDEL_biallelic 37122 91 hg19 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 501912 SNP_multiallelic 9001 91 hg19 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 282537 INDEL_multiallelic 2793 91 hg19 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 17394968 SNP_biallelic 386602 107 hg19 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 16289697 SNP_biallelic 361130 103 hg19 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2766625 INDEL_biallelic 39075 103 hg19 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 523470 SNP_multiallelic 9001 103 hg19 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 299213 INDEL_multiallelic 2793 103 hg19 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 620177 SNP_multiallelic 9001 113 hg19 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 348415 INDEL_multiallelic 2793 113 hg19 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2781558 INDEL_biallelic 39522 102 hg19 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2894670 INDEL_biallelic 41158 107 hg19 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 528791 SNP_multiallelic 9001 107 hg19 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 482658 SNP_multiallelic 9001 85 hg19 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 16700071 SNP_biallelic 378064 102 hg19 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 299469 INDEL_multiallelic 2793 102 hg19 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 269590 INDEL_multiallelic 2793 85 hg19 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 13739429 SNP_biallelic 311331 104 hg19 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2500823 INDEL_biallelic 35330 104 hg19 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 507965 SNP_multiallelic 9001 104 hg19 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 289248 INDEL_multiallelic 2793 104 hg19 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 293182 INDEL_multiallelic 2793 96 hg19 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 14273434 SNP_biallelic 332470 99 hg19 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2460305 INDEL_biallelic 35390 99 hg19 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 502087 SNP_multiallelic 9001 99 hg19 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 284810 INDEL_multiallelic 2793 99 hg19 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 26827027 SNP_biallelic 604266 99 hg19 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3798906 INDEL_biallelic 56465 99 hg19 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 591979 SNP_multiallelic 9001 99 hg19 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 326686 INDEL_multiallelic 2793 99 hg19 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 24040343 SNP_biallelic 571892 85 hg19 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3495249 INDEL_biallelic 55387 85 hg19 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 563243 SNP_multiallelic 9001 85 hg19 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 306857 INDEL_multiallelic 2793 85 hg19 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 14089625 SNP_biallelic 348364 85 hg19 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 13552074 SNP_biallelic 355081 64 hg19 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2340125 INDEL_biallelic 40434 64 hg19 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 457845 SNP_multiallelic 9001 64 hg19 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 252431 INDEL_multiallelic 2793 64 hg19 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2453763 INDEL_biallelic 38795 85 hg19 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 16409514 SNP_biallelic 378670 96 hg19 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2737907 INDEL_biallelic 40035 96 hg19 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 514728 SNP_multiallelic 9001 96 hg19 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 21463597 SNP_biallelic 485649 104 hg19 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3368031 INDEL_biallelic 50305 104 hg19 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 548165 SNP_multiallelic 9001 104 hg19 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 310538 INDEL_multiallelic 2793 104 hg19 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 16916706 SNP_biallelic 384155 102 hg19 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2792452 INDEL_biallelic 39707 102 hg19 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 522968 SNP_multiallelic 9001 102 hg19 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 300081 INDEL_multiallelic 2793 102 hg19 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 17158519 SNP_biallelic 381041 107 hg19 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2833598 INDEL_biallelic 39619 107 hg19 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 525975 SNP_multiallelic 9001 107 hg19 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 302278 INDEL_multiallelic 2793 107 hg19 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 26665622 SNP_biallelic 573191 108 hg19 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3926133 INDEL_biallelic 56523 108 hg19 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 609563 SNP_multiallelic 9001 108 hg19 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/pop/17_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 339065 INDEL_multiallelic 2793 108 hg19 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EUR_SNP_biallelic.no_monomorphic.vcf.gz 57559491 SNP_biallelic 633190 503 hg19 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7862195 INDEL_biallelic 49097 503 hg19 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AMR_SNP_biallelic.no_monomorphic.vcf.gz 50491190 SNP_biallelic 722271 347 hg19 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6856983 INDEL_biallelic 59443 347 hg19 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EAS_SNP_biallelic.no_monomorphic.vcf.gz 52616637 SNP_biallelic 621121 504 hg19 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7056744 INDEL_biallelic 43509 504 hg19 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AFR_SNP_biallelic.no_monomorphic.vcf.gz 118739432 SNP_biallelic 1111573 661 hg19 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13494746 INDEL_biallelic 72072 661 hg19 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_SAS_SNP_biallelic.no_monomorphic.vcf.gz 59884530 SNP_biallelic 697389 489 hg19 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7806792 INDEL_biallelic 49008 489 hg19 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1031979 SNP_multiallelic 9001 503 hg19 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 683941 INDEL_multiallelic 2793 503 hg19 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 883731 SNP_multiallelic 9001 347 hg19 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 559012 INDEL_multiallelic 2793 347 hg19 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 977563 SNP_multiallelic 9001 504 hg19 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 650848 INDEL_multiallelic 2793 504 hg19 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1613294 SNP_multiallelic 9001 661 hg19 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1015868 INDEL_multiallelic 2793 661 hg19 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1032117 SNP_multiallelic 9001 489 hg19 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/17/17_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 686834 INDEL_multiallelic 2793 489 hg19 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 292632 INDEL_multiallelic 2728 103 hg19 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 292147 INDEL_multiallelic 2728 99 hg19 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 26984422 SNP_biallelic 616900 96 hg19 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3455618 INDEL_biallelic 54159 96 hg19 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 572759 SNP_multiallelic 8670 96 hg19 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 319394 INDEL_multiallelic 2728 96 hg19 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2225088 INDEL_biallelic 32313 105 hg19 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2235105 INDEL_biallelic 32420 103 hg19 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 20733118 SNP_biallelic 549735 61 hg19 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2776773 INDEL_biallelic 50560 61 hg19 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 491896 SNP_multiallelic 8670 61 hg19 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 267779 INDEL_multiallelic 2728 61 hg19 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 502894 SNP_multiallelic 8670 103 hg19 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 292792 INDEL_multiallelic 2728 105 hg19 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 16232613 SNP_biallelic 393219 86 hg19 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2343217 INDEL_biallelic 36380 86 hg19 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 493018 SNP_multiallelic 8670 86 hg19 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 282171 INDEL_multiallelic 2728 86 hg19 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2731576 INDEL_biallelic 42810 94 hg19 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 13651923 SNP_biallelic 321583 93 hg19 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2088323 INDEL_biallelic 31233 93 hg19 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 490426 SNP_multiallelic 8670 93 hg19 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 281056 INDEL_multiallelic 2728 93 hg19 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 15075088 SNP_biallelic 348464 103 hg19 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 15870588 SNP_biallelic 359223 99 hg19 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2363390 INDEL_biallelic 34672 99 hg19 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 506885 SNP_multiallelic 8670 99 hg19 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 503660 SNP_multiallelic 8670 105 hg19 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 14615212 SNP_biallelic 335543 105 hg19 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 517699 SNP_multiallelic 8670 102 hg19 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 19256191 SNP_biallelic 451480 94 hg19 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 516668 SNP_multiallelic 8670 94 hg19 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 294933 INDEL_multiallelic 2728 94 hg19 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 28250871 SNP_biallelic 604628 113 hg19 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 344843 INDEL_multiallelic 2728 113 hg19 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 25263111 SNP_biallelic 561906 99 hg19 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3363050 INDEL_biallelic 51145 99 hg19 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 578590 SNP_multiallelic 8670 99 hg19 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 323725 INDEL_multiallelic 2728 99 hg19 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3624242 INDEL_biallelic 52113 113 hg19 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 303410 INDEL_multiallelic 2728 107 hg19 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2506924 INDEL_biallelic 36462 102 hg19 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 14557881 SNP_biallelic 321196 99 hg19 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2301166 INDEL_biallelic 33538 99 hg19 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 504958 SNP_multiallelic 8670 99 hg19 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 290953 INDEL_multiallelic 2728 99 hg19 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 607548 SNP_multiallelic 8670 113 hg19 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 14756450 SNP_biallelic 338778 91 hg19 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2259079 INDEL_biallelic 33999 91 hg19 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 496586 SNP_multiallelic 8670 91 hg19 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 283156 INDEL_multiallelic 2728 91 hg19 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 523009 SNP_multiallelic 8670 107 hg19 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 17634562 SNP_biallelic 391555 107 hg19 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 16638107 SNP_biallelic 369507 103 hg19 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2465646 INDEL_biallelic 35538 103 hg19 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 516027 SNP_multiallelic 8670 103 hg19 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 299969 INDEL_multiallelic 2728 103 hg19 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2565091 INDEL_biallelic 37072 107 hg19 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 454573 SNP_multiallelic 8670 64 hg19 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 17383492 SNP_biallelic 395163 102 hg19 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 300638 INDEL_multiallelic 2728 102 hg19 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 253910 INDEL_multiallelic 2728 64 hg19 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 15255303 SNP_biallelic 379660 85 hg19 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 14144905 SNP_biallelic 320807 104 hg19 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2213437 INDEL_biallelic 31735 104 hg19 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 504055 SNP_multiallelic 8670 104 hg19 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 293901 INDEL_multiallelic 2728 104 hg19 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 14900339 SNP_biallelic 349262 99 hg19 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2214289 INDEL_biallelic 32590 99 hg19 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 498115 SNP_multiallelic 8670 99 hg19 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 288367 INDEL_multiallelic 2728 99 hg19 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2264021 INDEL_biallelic 36708 85 hg19 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 27130750 SNP_biallelic 614225 99 hg19 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3437031 INDEL_biallelic 52460 99 hg19 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 578287 SNP_multiallelic 8670 99 hg19 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 323877 INDEL_multiallelic 2728 99 hg19 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 481371 SNP_multiallelic 8670 85 hg19 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 24088934 SNP_biallelic 575192 85 hg19 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3153878 INDEL_biallelic 51159 85 hg19 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 550177 SNP_multiallelic 8670 85 hg19 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 303193 INDEL_multiallelic 2728 85 hg19 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 273704 INDEL_multiallelic 2728 85 hg19 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 14414793 SNP_biallelic 381786 64 hg19 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2144851 INDEL_biallelic 37839 64 hg19 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 508271 SNP_multiallelic 8670 96 hg19 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 16984468 SNP_biallelic 394030 96 hg19 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2456820 INDEL_biallelic 36735 96 hg19 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 293496 INDEL_multiallelic 2728 96 hg19 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 22353301 SNP_biallelic 508806 104 hg19 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3052958 INDEL_biallelic 46727 104 hg19 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 542398 SNP_multiallelic 8670 104 hg19 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 312076 INDEL_multiallelic 2728 104 hg19 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 17478592 SNP_biallelic 397221 102 hg19 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2522891 INDEL_biallelic 36671 102 hg19 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 517827 SNP_multiallelic 8670 102 hg19 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 301275 INDEL_multiallelic 2728 102 hg19 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 17198178 SNP_biallelic 381317 107 hg19 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2501524 INDEL_biallelic 35667 107 hg19 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 520028 SNP_multiallelic 8670 107 hg19 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 302709 INDEL_multiallelic 2728 107 hg19 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 26810007 SNP_biallelic 578604 108 hg19 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3538239 INDEL_biallelic 52374 108 hg19 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 597369 SNP_multiallelic 8670 108 hg19 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/pop/18_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 335890 INDEL_multiallelic 2728 108 hg19 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EUR_SNP_biallelic.no_monomorphic.vcf.gz 58408100 SNP_biallelic 620642 503 hg19 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 6911981 INDEL_biallelic 44255 503 hg19 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AMR_SNP_biallelic.no_monomorphic.vcf.gz 52379846 SNP_biallelic 737239 347 hg19 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6177241 INDEL_biallelic 55495 347 hg19 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EAS_SNP_biallelic.no_monomorphic.vcf.gz 54903372 SNP_biallelic 622991 504 hg19 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6324914 INDEL_biallelic 40040 504 hg19 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AFR_SNP_biallelic.no_monomorphic.vcf.gz 119670801 SNP_biallelic 1092017 661 hg19 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 12108308 INDEL_biallelic 66676 661 hg19 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_SAS_SNP_biallelic.no_monomorphic.vcf.gz 61576244 SNP_biallelic 696933 489 hg19 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 6956577 INDEL_biallelic 45108 489 hg19 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1035289 SNP_multiallelic 8670 503 hg19 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 695283 INDEL_multiallelic 2728 503 hg19 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 887195 SNP_multiallelic 8670 347 hg19 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 570822 INDEL_multiallelic 2728 347 hg19 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 992384 SNP_multiallelic 8670 504 hg19 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 674170 INDEL_multiallelic 2728 504 hg19 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1590219 SNP_multiallelic 8670 661 hg19 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1013745 INDEL_multiallelic 2728 661 hg19 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1035841 SNP_multiallelic 8670 489 hg19 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/18/18_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 699190 INDEL_multiallelic 2728 489 hg19 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 250592 INDEL_multiallelic 2431 103 hg19 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 253191 INDEL_multiallelic 2431 99 hg19 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 22108073 SNP_biallelic 502431 96 hg19 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3074897 INDEL_biallelic 46556 96 hg19 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 504615 SNP_multiallelic 7713 96 hg19 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 279635 INDEL_multiallelic 2431 96 hg19 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2051778 INDEL_biallelic 28982 105 hg19 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2069445 INDEL_biallelic 29264 103 hg19 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 17117532 SNP_biallelic 450101 61 hg19 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2488582 INDEL_biallelic 44112 61 hg19 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 434124 SNP_multiallelic 7713 61 hg19 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 235146 INDEL_multiallelic 2431 61 hg19 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 441620 SNP_multiallelic 7713 103 hg19 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 250043 INDEL_multiallelic 2431 105 hg19 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 13327432 SNP_biallelic 320788 86 hg19 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2140601 INDEL_biallelic 32300 86 hg19 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 436514 SNP_multiallelic 7713 86 hg19 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 243565 INDEL_multiallelic 2431 86 hg19 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2519718 INDEL_biallelic 38449 94 hg19 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 11157096 SNP_biallelic 261259 93 hg19 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1936436 INDEL_biallelic 28260 93 hg19 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 430347 SNP_multiallelic 7713 93 hg19 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 240698 INDEL_multiallelic 2431 93 hg19 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 12181225 SNP_biallelic 279682 103 hg19 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 13135565 SNP_biallelic 295232 99 hg19 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2189686 INDEL_biallelic 31241 99 hg19 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 447664 SNP_multiallelic 7713 99 hg19 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 441186 SNP_multiallelic 7713 105 hg19 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 11821532 SNP_biallelic 269613 105 hg19 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 459397 SNP_multiallelic 7713 102 hg19 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 16213066 SNP_biallelic 378686 94 hg19 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 457470 SNP_multiallelic 7713 94 hg19 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 256687 INDEL_multiallelic 2431 94 hg19 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 23006186 SNP_biallelic 489293 113 hg19 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 301004 INDEL_multiallelic 2431 113 hg19 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 20794918 SNP_biallelic 459809 99 hg19 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3016202 INDEL_biallelic 44341 99 hg19 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 509863 SNP_multiallelic 7713 99 hg19 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 283870 INDEL_multiallelic 2431 99 hg19 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3230813 INDEL_biallelic 44777 113 hg19 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 262227 INDEL_multiallelic 2431 107 hg19 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2290486 INDEL_biallelic 32298 102 hg19 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 11888409 SNP_biallelic 259257 99 hg19 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2108736 INDEL_biallelic 29876 99 hg19 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 444991 SNP_multiallelic 7713 99 hg19 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 251762 INDEL_multiallelic 2431 99 hg19 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 534050 SNP_multiallelic 7713 113 hg19 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 12129839 SNP_biallelic 275659 91 hg19 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2078293 INDEL_biallelic 30435 91 hg19 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 438399 SNP_multiallelic 7713 91 hg19 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 245906 INDEL_multiallelic 2431 91 hg19 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 461308 SNP_multiallelic 7713 107 hg19 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 14422613 SNP_biallelic 318648 107 hg19 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 13805973 SNP_biallelic 305756 103 hg19 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2284127 INDEL_biallelic 32053 103 hg19 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 459240 SNP_multiallelic 7713 103 hg19 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 259705 INDEL_multiallelic 2431 103 hg19 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2352245 INDEL_biallelic 33044 107 hg19 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 400803 SNP_multiallelic 7713 64 hg19 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 14112509 SNP_biallelic 317948 102 hg19 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 259847 INDEL_multiallelic 2431 102 hg19 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 220548 INDEL_multiallelic 2431 64 hg19 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 11978274 SNP_biallelic 295749 85 hg19 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 11582871 SNP_biallelic 262035 104 hg19 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2065018 INDEL_biallelic 29039 104 hg19 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 441064 SNP_multiallelic 7713 104 hg19 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 251246 INDEL_multiallelic 2431 104 hg19 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 12113538 SNP_biallelic 282135 99 hg19 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2048271 INDEL_biallelic 29424 99 hg19 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 436502 SNP_multiallelic 7713 99 hg19 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 247196 INDEL_multiallelic 2431 99 hg19 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2018809 INDEL_biallelic 31746 85 hg19 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 21923064 SNP_biallelic 491149 99 hg19 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3054819 INDEL_biallelic 45011 99 hg19 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 510267 SNP_multiallelic 7713 99 hg19 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 285084 INDEL_multiallelic 2431 99 hg19 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 420402 SNP_multiallelic 7713 85 hg19 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 19919179 SNP_biallelic 472647 85 hg19 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2824994 INDEL_biallelic 44411 85 hg19 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 485725 SNP_multiallelic 7713 85 hg19 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 265475 INDEL_multiallelic 2431 85 hg19 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 234786 INDEL_multiallelic 2431 85 hg19 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 11996320 SNP_biallelic 315870 64 hg19 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1971386 INDEL_biallelic 34093 64 hg19 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 450376 SNP_multiallelic 7713 96 hg19 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 13839698 SNP_biallelic 318384 96 hg19 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2253135 INDEL_biallelic 32774 96 hg19 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 254423 INDEL_multiallelic 2431 96 hg19 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 17940197 SNP_biallelic 406446 104 hg19 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2730434 INDEL_biallelic 40493 104 hg19 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 475715 SNP_multiallelic 7713 104 hg19 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 268698 INDEL_multiallelic 2431 104 hg19 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 14290818 SNP_biallelic 322452 102 hg19 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2301048 INDEL_biallelic 32389 102 hg19 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 459688 SNP_multiallelic 7713 102 hg19 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 260739 INDEL_multiallelic 2431 102 hg19 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 14346343 SNP_biallelic 317047 107 hg19 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2322968 INDEL_biallelic 32305 107 hg19 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 461068 SNP_multiallelic 7713 107 hg19 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 263113 INDEL_multiallelic 2431 107 hg19 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 22113227 SNP_biallelic 475371 108 hg19 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3171947 INDEL_biallelic 45298 108 hg19 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 527001 SNP_multiallelic 7713 108 hg19 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/pop/19_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 294635 INDEL_multiallelic 2431 108 hg19 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_SAS_SNP_biallelic.no_monomorphic.vcf.gz 50349259 SNP_biallelic 571518 489 hg19 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EUR_SNP_biallelic.no_monomorphic.vcf.gz 47828381 SNP_biallelic 513713 503 hg19 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 6398353 INDEL_biallelic 39285 503 hg19 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AMR_SNP_biallelic.no_monomorphic.vcf.gz 42376378 SNP_biallelic 599223 347 hg19 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 5589942 INDEL_biallelic 47862 347 hg19 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EAS_SNP_biallelic.no_monomorphic.vcf.gz 44198922 SNP_biallelic 506882 504 hg19 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 5872669 INDEL_biallelic 35621 504 hg19 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AFR_SNP_biallelic.no_monomorphic.vcf.gz 97510843 SNP_biallelic 886423 661 hg19 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 10848552 INDEL_biallelic 56666 661 hg19 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 6440022 INDEL_biallelic 39834 489 hg19 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 914929 SNP_multiallelic 7713 503 hg19 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 593380 INDEL_multiallelic 2431 503 hg19 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 776963 SNP_multiallelic 7713 347 hg19 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 485237 INDEL_multiallelic 2431 347 hg19 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 864961 SNP_multiallelic 7713 504 hg19 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 563931 INDEL_multiallelic 2431 504 hg19 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1394287 SNP_multiallelic 7713 661 hg19 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 877878 INDEL_multiallelic 2431 661 hg19 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 922812 SNP_multiallelic 7713 489 hg19 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/19/19_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 595378 INDEL_multiallelic 2431 489 hg19 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 216967 INDEL_multiallelic 2074 103 hg19 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 219381 INDEL_multiallelic 2074 99 hg19 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 21223925 SNP_biallelic 486225 96 hg19 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 2663636 INDEL_biallelic 41401 96 hg19 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 438341 SNP_multiallelic 6842 96 hg19 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 242590 INDEL_multiallelic 2074 96 hg19 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1672297 INDEL_biallelic 23889 105 hg19 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1676144 INDEL_biallelic 23871 103 hg19 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 16274166 SNP_biallelic 431146 61 hg19 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2141633 INDEL_biallelic 38598 61 hg19 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 377838 SNP_multiallelic 6842 61 hg19 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 203646 INDEL_multiallelic 2074 61 hg19 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 379354 SNP_multiallelic 6842 103 hg19 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 217473 INDEL_multiallelic 2074 105 hg19 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 12406434 SNP_biallelic 302146 86 hg19 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1775102 INDEL_biallelic 27188 86 hg19 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 376315 SNP_multiallelic 6842 86 hg19 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 211430 INDEL_multiallelic 2074 86 hg19 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2126102 INDEL_biallelic 33118 94 hg19 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 10287021 SNP_biallelic 243067 93 hg19 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1574440 INDEL_biallelic 23105 93 hg19 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 370486 SNP_multiallelic 6842 93 hg19 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 208840 INDEL_multiallelic 2074 93 hg19 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 11271176 SNP_biallelic 262049 103 hg19 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 12170196 SNP_biallelic 276769 99 hg19 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1803220 INDEL_biallelic 26039 99 hg19 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 386711 SNP_multiallelic 6842 99 hg19 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 379689 SNP_multiallelic 6842 105 hg19 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 10962333 SNP_biallelic 253167 105 hg19 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 394852 SNP_multiallelic 6842 102 hg19 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 15373641 SNP_biallelic 363359 94 hg19 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 395606 SNP_multiallelic 6842 94 hg19 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 222615 INDEL_multiallelic 2074 94 hg19 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 22277119 SNP_biallelic 476863 113 hg19 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 262661 INDEL_multiallelic 2074 113 hg19 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 19982860 SNP_biallelic 445421 99 hg19 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 2597457 INDEL_biallelic 39141 99 hg19 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 442806 SNP_multiallelic 6842 99 hg19 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 246315 INDEL_multiallelic 2074 99 hg19 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 2798152 INDEL_biallelic 39887 113 hg19 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 227570 INDEL_multiallelic 2074 107 hg19 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1898548 INDEL_biallelic 27207 102 hg19 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 11104195 SNP_biallelic 245547 99 hg19 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1747600 INDEL_biallelic 25075 99 hg19 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 384606 SNP_multiallelic 6842 99 hg19 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 217947 INDEL_multiallelic 2074 99 hg19 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 464179 SNP_multiallelic 6842 113 hg19 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 11350226 SNP_biallelic 262165 91 hg19 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1725027 INDEL_biallelic 25659 91 hg19 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 379038 SNP_multiallelic 6842 91 hg19 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 213211 INDEL_multiallelic 2074 91 hg19 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 398396 SNP_multiallelic 6842 107 hg19 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 13578973 SNP_biallelic 303336 107 hg19 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 12854552 SNP_biallelic 287939 103 hg19 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1881728 INDEL_biallelic 26818 103 hg19 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 394200 SNP_multiallelic 6842 103 hg19 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 225065 INDEL_multiallelic 2074 103 hg19 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1959555 INDEL_biallelic 27955 107 hg19 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 344525 SNP_multiallelic 6842 64 hg19 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 13254159 SNP_biallelic 302828 102 hg19 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 225152 INDEL_multiallelic 2074 102 hg19 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 189909 INDEL_multiallelic 2074 64 hg19 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 11301310 SNP_biallelic 282954 85 hg19 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 10665337 SNP_biallelic 243377 104 hg19 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1681280 INDEL_biallelic 23725 104 hg19 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 381042 SNP_multiallelic 6842 104 hg19 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 218017 INDEL_multiallelic 2074 104 hg19 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 11277175 SNP_biallelic 265813 99 hg19 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1669729 INDEL_biallelic 24135 99 hg19 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 376437 SNP_multiallelic 6842 99 hg19 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 214484 INDEL_multiallelic 2074 99 hg19 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1677244 INDEL_biallelic 26760 85 hg19 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 21205453 SNP_biallelic 478851 99 hg19 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 2640070 INDEL_biallelic 39857 99 hg19 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 444267 SNP_multiallelic 6842 99 hg19 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 246521 INDEL_multiallelic 2074 99 hg19 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 364032 SNP_multiallelic 6842 85 hg19 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 18989781 SNP_biallelic 453563 85 hg19 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2430146 INDEL_biallelic 39069 85 hg19 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 422430 SNP_multiallelic 6842 85 hg19 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 230947 INDEL_multiallelic 2074 85 hg19 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 203885 INDEL_multiallelic 2074 85 hg19 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 10806154 SNP_biallelic 288096 64 hg19 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1603640 INDEL_biallelic 27939 64 hg19 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 388937 SNP_multiallelic 6842 96 hg19 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 12969387 SNP_biallelic 302108 96 hg19 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1869586 INDEL_biallelic 27587 96 hg19 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 220277 INDEL_multiallelic 2074 96 hg19 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 17215632 SNP_biallelic 392349 104 hg19 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2332091 INDEL_biallelic 35273 104 hg19 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 413380 SNP_multiallelic 6842 104 hg19 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 234596 INDEL_multiallelic 2074 104 hg19 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 13297335 SNP_biallelic 303633 102 hg19 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1904063 INDEL_biallelic 27236 102 hg19 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 395226 SNP_multiallelic 6842 102 hg19 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 225101 INDEL_multiallelic 2074 102 hg19 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 13395691 SNP_biallelic 298959 107 hg19 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1923404 INDEL_biallelic 27080 107 hg19 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 397928 SNP_multiallelic 6842 107 hg19 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 227673 INDEL_multiallelic 2074 107 hg19 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 21155834 SNP_biallelic 457089 108 hg19 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 2739219 INDEL_biallelic 40203 108 hg19 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 456490 SNP_multiallelic 6842 108 hg19 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/pop/20_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 255272 INDEL_multiallelic 2074 108 hg19 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_SAS_SNP_biallelic.no_monomorphic.vcf.gz 47524014 SNP_biallelic 547202 489 hg19 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 5314855 INDEL_biallelic 34063 489 hg19 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EUR_SNP_biallelic.no_monomorphic.vcf.gz 45369940 SNP_biallelic 489190 503 hg19 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 5311501 INDEL_biallelic 33484 503 hg19 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AMR_SNP_biallelic.no_monomorphic.vcf.gz 40640265 SNP_biallelic 580231 347 hg19 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 4731574 INDEL_biallelic 42184 347 hg19 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EAS_SNP_biallelic.no_monomorphic.vcf.gz 41821950 SNP_biallelic 487896 504 hg19 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 4784160 INDEL_biallelic 29931 504 hg19 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AFR_SNP_biallelic.no_monomorphic.vcf.gz 94258054 SNP_biallelic 866482 661 hg19 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 9333958 INDEL_biallelic 51090 661 hg19 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 780828 SNP_multiallelic 6842 503 hg19 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 514723 INDEL_multiallelic 2074 503 hg19 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 667044 SNP_multiallelic 6842 347 hg19 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 422147 INDEL_multiallelic 2074 347 hg19 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 732059 SNP_multiallelic 6842 504 hg19 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 489813 INDEL_multiallelic 2074 504 hg19 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1206230 SNP_multiallelic 6842 661 hg19 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 764528 INDEL_multiallelic 2074 661 hg19 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 782640 SNP_multiallelic 6842 489 hg19 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/20/20_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 516237 INDEL_multiallelic 2074 489 hg19 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 161045 INDEL_multiallelic 1490 103 hg19 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 162150 INDEL_multiallelic 1490 99 hg19 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 13572950 SNP_biallelic 307141 96 hg19 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 1864481 INDEL_biallelic 29349 96 hg19 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 328824 SNP_multiallelic 4857 96 hg19 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 176887 INDEL_multiallelic 1490 96 hg19 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1196783 INDEL_biallelic 17489 105 hg19 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1195526 INDEL_biallelic 17482 103 hg19 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 10420561 SNP_biallelic 273109 61 hg19 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1500550 INDEL_biallelic 27476 61 hg19 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 281569 SNP_multiallelic 4857 61 hg19 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 148113 INDEL_multiallelic 1490 61 hg19 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 289254 SNP_multiallelic 4857 103 hg19 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 161708 INDEL_multiallelic 1490 105 hg19 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 7992367 SNP_biallelic 191484 86 hg19 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1255421 INDEL_biallelic 19649 86 hg19 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 282439 SNP_multiallelic 4857 86 hg19 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 156241 INDEL_multiallelic 1490 86 hg19 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1474581 INDEL_biallelic 23392 94 hg19 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 6849957 SNP_biallelic 158973 93 hg19 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1141383 INDEL_biallelic 17228 93 hg19 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 281469 SNP_multiallelic 4857 93 hg19 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 155632 INDEL_multiallelic 1490 93 hg19 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 7377146 SNP_biallelic 167916 103 hg19 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 7808631 SNP_biallelic 174657 99 hg19 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1264240 INDEL_biallelic 18749 99 hg19 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 289465 SNP_multiallelic 4857 99 hg19 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 289431 SNP_multiallelic 4857 105 hg19 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 7202011 SNP_biallelic 162765 105 hg19 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 296437 SNP_multiallelic 4857 102 hg19 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 9698655 SNP_biallelic 225829 94 hg19 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 295775 SNP_multiallelic 4857 94 hg19 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 163352 INDEL_multiallelic 1490 94 hg19 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 14271251 SNP_biallelic 302668 113 hg19 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 190206 INDEL_multiallelic 1490 113 hg19 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 12859199 SNP_biallelic 283698 99 hg19 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 1826472 INDEL_biallelic 27978 99 hg19 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 332648 SNP_multiallelic 4857 99 hg19 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 179201 INDEL_multiallelic 1490 99 hg19 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 1959287 INDEL_biallelic 28348 113 hg19 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 168309 INDEL_multiallelic 1490 107 hg19 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1341865 INDEL_biallelic 19711 102 hg19 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 7203837 SNP_biallelic 157007 99 hg19 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1227968 INDEL_biallelic 18104 99 hg19 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 288100 SNP_multiallelic 4857 99 hg19 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 161208 INDEL_multiallelic 1490 99 hg19 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 348721 SNP_multiallelic 4857 113 hg19 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 7326083 SNP_biallelic 166552 91 hg19 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1204698 INDEL_biallelic 18367 91 hg19 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 283629 SNP_multiallelic 4857 91 hg19 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 156759 INDEL_multiallelic 1490 91 hg19 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 299461 SNP_multiallelic 4857 107 hg19 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 8956049 SNP_biallelic 198202 107 hg19 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 8245657 SNP_biallelic 181295 103 hg19 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1326539 INDEL_biallelic 19376 103 hg19 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 296651 SNP_multiallelic 4857 103 hg19 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 165783 INDEL_multiallelic 1490 103 hg19 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1389980 INDEL_biallelic 20450 107 hg19 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 257927 SNP_multiallelic 4857 64 hg19 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 8581600 SNP_biallelic 193275 102 hg19 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 165964 INDEL_multiallelic 1490 102 hg19 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 139510 INDEL_multiallelic 1490 64 hg19 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 7236899 SNP_biallelic 179348 85 hg19 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 6995958 SNP_biallelic 156798 104 hg19 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1195758 INDEL_biallelic 17364 104 hg19 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 289486 SNP_multiallelic 4857 104 hg19 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 161322 INDEL_multiallelic 1490 104 hg19 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 7440692 SNP_biallelic 172159 99 hg19 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1201130 INDEL_biallelic 17819 99 hg19 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 286287 SNP_multiallelic 4857 99 hg19 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 159739 INDEL_multiallelic 1490 99 hg19 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1181612 INDEL_biallelic 19427 85 hg19 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 13700311 SNP_biallelic 307298 99 hg19 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 1859993 INDEL_biallelic 28564 99 hg19 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 332536 SNP_multiallelic 4857 99 hg19 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 179076 INDEL_multiallelic 1490 99 hg19 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 271682 SNP_multiallelic 4857 85 hg19 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 12295932 SNP_biallelic 291108 85 hg19 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1718728 INDEL_biallelic 28098 85 hg19 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 316342 SNP_multiallelic 4857 85 hg19 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 167888 INDEL_multiallelic 1490 85 hg19 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 148830 INDEL_multiallelic 1490 85 hg19 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 6966638 SNP_biallelic 183547 64 hg19 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1127875 INDEL_biallelic 20115 64 hg19 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 292422 SNP_multiallelic 4857 96 hg19 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 8435444 SNP_biallelic 193712 96 hg19 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1323155 INDEL_biallelic 20032 96 hg19 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 162693 INDEL_multiallelic 1490 96 hg19 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 11165940 SNP_biallelic 251662 104 hg19 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1646801 INDEL_biallelic 25431 104 hg19 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 311014 SNP_multiallelic 4857 104 hg19 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 172094 INDEL_multiallelic 1490 104 hg19 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 8576884 SNP_biallelic 192848 102 hg19 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1343064 INDEL_biallelic 19681 102 hg19 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 296463 SNP_multiallelic 4857 102 hg19 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 166500 INDEL_multiallelic 1490 102 hg19 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 8613901 SNP_biallelic 189007 107 hg19 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1351046 INDEL_biallelic 19526 107 hg19 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 298769 SNP_multiallelic 4857 107 hg19 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 168211 INDEL_multiallelic 1490 107 hg19 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 13615108 SNP_biallelic 291312 108 hg19 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 1918158 INDEL_biallelic 28584 108 hg19 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 343627 SNP_multiallelic 4857 108 hg19 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/pop/21_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 185591 INDEL_multiallelic 1490 108 hg19 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EUR_SNP_biallelic.no_monomorphic.vcf.gz 29216615 SNP_biallelic 309408 503 hg19 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3707629 INDEL_biallelic 24326 503 hg19 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AMR_SNP_biallelic.no_monomorphic.vcf.gz 25684261 SNP_biallelic 359532 347 hg19 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3273227 INDEL_biallelic 29784 347 hg19 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EAS_SNP_biallelic.no_monomorphic.vcf.gz 27163364 SNP_biallelic 303085 504 hg19 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3398210 INDEL_biallelic 21573 504 hg19 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AFR_SNP_biallelic.no_monomorphic.vcf.gz 59966104 SNP_biallelic 540642 661 hg19 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6487342 INDEL_biallelic 36035 661 hg19 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_SAS_SNP_biallelic.no_monomorphic.vcf.gz 30389725 SNP_biallelic 339222 489 hg19 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3712528 INDEL_biallelic 24333 489 hg19 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 593193 SNP_multiallelic 4857 503 hg19 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 384021 INDEL_multiallelic 1490 503 hg19 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 506982 SNP_multiallelic 4857 347 hg19 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 311646 INDEL_multiallelic 1490 347 hg19 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 575470 SNP_multiallelic 4857 504 hg19 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 371479 INDEL_multiallelic 1490 504 hg19 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 917586 SNP_multiallelic 4857 661 hg19 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 556374 INDEL_multiallelic 1490 661 hg19 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 597138 SNP_multiallelic 4857 489 hg19 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/21/21_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 385157 INDEL_multiallelic 1490 489 hg19 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 143366 INDEL_multiallelic 1346 103 hg19 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 144309 INDEL_multiallelic 1346 99 hg19 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 13468385 SNP_biallelic 302998 96 hg19 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 1799701 INDEL_biallelic 27341 96 hg19 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 320283 SNP_multiallelic 4934 96 hg19 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 157083 INDEL_multiallelic 1346 96 hg19 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1180071 INDEL_biallelic 16521 105 hg19 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1197020 INDEL_biallelic 16775 103 hg19 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 10422211 SNP_biallelic 271458 61 hg19 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1447239 INDEL_biallelic 25648 61 hg19 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 274858 SNP_multiallelic 4934 61 hg19 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 132305 INDEL_multiallelic 1346 61 hg19 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 279421 SNP_multiallelic 4934 103 hg19 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 143096 INDEL_multiallelic 1346 105 hg19 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 8144839 SNP_biallelic 193721 86 hg19 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1251012 INDEL_biallelic 18786 86 hg19 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 276060 SNP_multiallelic 4934 86 hg19 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 139288 INDEL_multiallelic 1346 86 hg19 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1444814 INDEL_biallelic 21880 94 hg19 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 6815620 SNP_biallelic 157408 93 hg19 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1123025 INDEL_biallelic 16266 93 hg19 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 271795 SNP_multiallelic 4934 93 hg19 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 137653 INDEL_multiallelic 1346 93 hg19 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 7432322 SNP_biallelic 168312 103 hg19 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 7957665 SNP_biallelic 176831 99 hg19 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1269737 INDEL_biallelic 17963 99 hg19 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 282492 SNP_multiallelic 4934 99 hg19 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 279754 SNP_multiallelic 4934 105 hg19 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 7132642 SNP_biallelic 159910 105 hg19 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 288901 SNP_multiallelic 4934 102 hg19 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 9672581 SNP_biallelic 223374 94 hg19 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 287762 SNP_multiallelic 4934 94 hg19 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 145389 INDEL_multiallelic 1346 94 hg19 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 14108764 SNP_biallelic 296127 113 hg19 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 169477 INDEL_multiallelic 1346 113 hg19 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 12516150 SNP_biallelic 273192 99 hg19 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 1740769 INDEL_biallelic 25627 99 hg19 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 322330 SNP_multiallelic 4934 99 hg19 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 159179 INDEL_multiallelic 1346 99 hg19 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 1884636 INDEL_biallelic 26237 113 hg19 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 148814 INDEL_multiallelic 1346 107 hg19 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1338708 INDEL_biallelic 18783 102 hg19 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 7258952 SNP_biallelic 156270 99 hg19 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1237882 INDEL_biallelic 17408 99 hg19 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 281120 SNP_multiallelic 4934 99 hg19 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 143515 INDEL_multiallelic 1346 99 hg19 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 338590 SNP_multiallelic 4934 113 hg19 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 7309740 SNP_biallelic 164173 91 hg19 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1200018 INDEL_biallelic 17397 91 hg19 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 275759 SNP_multiallelic 4934 91 hg19 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 139545 INDEL_multiallelic 1346 91 hg19 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 290994 SNP_multiallelic 4934 107 hg19 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 8809642 SNP_biallelic 192635 107 hg19 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 8444000 SNP_biallelic 184517 103 hg19 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1332147 INDEL_biallelic 18618 103 hg19 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 289719 SNP_multiallelic 4934 103 hg19 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 147786 INDEL_multiallelic 1346 103 hg19 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1375085 INDEL_biallelic 19244 107 hg19 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 251430 SNP_multiallelic 4934 64 hg19 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 8689045 SNP_biallelic 193887 102 hg19 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 148160 INDEL_multiallelic 1346 102 hg19 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 124744 INDEL_multiallelic 1346 64 hg19 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 7366300 SNP_biallelic 181505 85 hg19 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 7098800 SNP_biallelic 158462 104 hg19 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1193813 INDEL_biallelic 16636 104 hg19 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 280142 SNP_multiallelic 4934 104 hg19 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 143625 INDEL_multiallelic 1346 104 hg19 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 7465775 SNP_biallelic 172033 99 hg19 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1190981 INDEL_biallelic 17018 99 hg19 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 277055 SNP_multiallelic 4934 99 hg19 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 141469 INDEL_multiallelic 1346 99 hg19 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1177500 INDEL_biallelic 18559 85 hg19 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 13438532 SNP_biallelic 298216 99 hg19 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 1779903 INDEL_biallelic 26301 99 hg19 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 323309 SNP_multiallelic 4934 99 hg19 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 159097 INDEL_multiallelic 1346 99 hg19 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 264790 SNP_multiallelic 4934 85 hg19 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 12032828 SNP_biallelic 281863 85 hg19 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1641130 INDEL_biallelic 25862 85 hg19 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 307646 SNP_multiallelic 4934 85 hg19 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 149285 INDEL_multiallelic 1346 85 hg19 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 133829 INDEL_multiallelic 1346 85 hg19 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 6790790 SNP_biallelic 175897 64 hg19 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1096067 INDEL_biallelic 18636 64 hg19 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 283501 SNP_multiallelic 4934 96 hg19 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 8462082 SNP_biallelic 192606 96 hg19 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1308098 INDEL_biallelic 18898 96 hg19 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 144725 INDEL_multiallelic 1346 96 hg19 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 10782821 SNP_biallelic 240998 104 hg19 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1582232 INDEL_biallelic 23369 104 hg19 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 299438 SNP_multiallelic 4934 104 hg19 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 152421 INDEL_multiallelic 1346 104 hg19 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 8736645 SNP_biallelic 194938 102 hg19 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1342736 INDEL_biallelic 18854 102 hg19 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 289858 SNP_multiallelic 4934 102 hg19 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 148446 INDEL_multiallelic 1346 102 hg19 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 8709955 SNP_biallelic 189894 107 hg19 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1347600 INDEL_biallelic 18535 107 hg19 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 290332 SNP_multiallelic 4934 107 hg19 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 149208 INDEL_multiallelic 1346 107 hg19 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 13301792 SNP_biallelic 281352 108 hg19 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 1832653 INDEL_biallelic 26197 108 hg19 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 333368 SNP_multiallelic 4934 108 hg19 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/pop/22_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 164955 INDEL_multiallelic 1346 108 hg19 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AMR_SNP_biallelic.no_monomorphic.vcf.gz 24977786 SNP_biallelic 355643 347 hg19 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EUR_SNP_biallelic.no_monomorphic.vcf.gz 28790970 SNP_biallelic 308937 503 hg19 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3717390 INDEL_biallelic 22926 503 hg19 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 564160 SNP_multiallelic 4934 503 hg19 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 332171 INDEL_multiallelic 1346 503 hg19 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3208792 INDEL_biallelic 27708 347 hg19 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 480670 SNP_multiallelic 4934 347 hg19 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 270719 INDEL_multiallelic 1346 347 hg19 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EAS_SNP_biallelic.no_monomorphic.vcf.gz 26640336 SNP_biallelic 306295 504 hg19 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3377451 INDEL_biallelic 20669 504 hg19 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 537569 SNP_multiallelic 4934 504 hg19 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 317289 INDEL_multiallelic 1346 504 hg19 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AFR_SNP_biallelic.no_monomorphic.vcf.gz 57993478 SNP_biallelic 535240 661 hg19 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6224345 INDEL_biallelic 33424 661 hg19 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 874637 SNP_multiallelic 4934 661 hg19 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 482781 INDEL_multiallelic 1346 661 hg19 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_SAS_SNP_biallelic.no_monomorphic.vcf.gz 30364132 SNP_biallelic 344582 489 hg19 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3720593 INDEL_biallelic 23009 489 hg19 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 571302 SNP_multiallelic 4934 489 hg19 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/22/22_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 334996 INDEL_multiallelic 1346 489 hg19 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 813967 INDEL_multiallelic 8563 96 hg19 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 33835328 SNP_biallelic 818085 96 hg19 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5029229 INDEL_biallelic 81816 96 hg19 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1289756 SNP_multiallelic 22301 96 hg19 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 662894 INDEL_multiallelic 8563 61 hg19 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22538732 SNP_biallelic 581355 94 hg19 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 25566144 SNP_biallelic 727413 61 hg19 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3907985 INDEL_biallelic 76119 61 hg19 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1072941 SNP_multiallelic 22301 61 hg19 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 17737025 SNP_biallelic 489775 86 hg19 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3128887 INDEL_biallelic 53849 86 hg19 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1043772 SNP_multiallelic 22301 86 hg19 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 651686 INDEL_multiallelic 8563 86 hg19 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 14715723 SNP_biallelic 397105 93 hg19 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2767398 INDEL_biallelic 46849 93 hg19 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1009592 SNP_multiallelic 22301 93 hg19 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 627461 INDEL_multiallelic 8563 93 hg19 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3744934 INDEL_biallelic 64652 94 hg19 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 17505743 SNP_biallelic 437586 99 hg19 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3131841 INDEL_biallelic 50266 99 hg19 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1066870 SNP_multiallelic 22301 99 hg19 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 669469 INDEL_multiallelic 8563 99 hg19 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16957256 SNP_biallelic 429017 103 hg19 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3104862 INDEL_biallelic 49341 103 hg19 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1076742 SNP_multiallelic 22301 103 hg19 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 676594 INDEL_multiallelic 8563 103 hg19 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 15687570 SNP_biallelic 414403 105 hg19 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2910600 INDEL_biallelic 48939 105 hg19 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1040270 SNP_multiallelic 22301 105 hg19 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 647127 INDEL_multiallelic 8563 105 hg19 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1102979 SNP_multiallelic 22301 94 hg19 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 689784 INDEL_multiallelic 8563 94 hg19 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1094049 SNP_multiallelic 22301 102 hg19 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 31322413 SNP_biallelic 760214 99 hg19 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4810387 INDEL_biallelic 78687 99 hg19 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1273329 SNP_multiallelic 22301 99 hg19 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 801051 INDEL_multiallelic 8563 99 hg19 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 693695 INDEL_multiallelic 8563 102 hg19 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16819087 SNP_biallelic 392250 99 hg19 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3149693 INDEL_biallelic 48285 99 hg19 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1090230 SNP_multiallelic 22301 99 hg19 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 681526 INDEL_multiallelic 8563 99 hg19 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16371942 SNP_biallelic 408967 91 hg19 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3000687 INDEL_biallelic 48730 91 hg19 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1045581 SNP_multiallelic 22301 91 hg19 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 652599 INDEL_multiallelic 8563 91 hg19 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 18187031 SNP_biallelic 457618 103 hg19 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3272238 INDEL_biallelic 51827 103 hg19 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1086870 SNP_multiallelic 22301 103 hg19 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 687335 INDEL_multiallelic 8563 103 hg19 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 32706619 SNP_biallelic 809172 113 hg19 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4940024 INDEL_biallelic 81741 113 hg19 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1290532 SNP_multiallelic 22301 113 hg19 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 807282 INDEL_multiallelic 8563 113 hg19 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 19119225 SNP_biallelic 481779 107 hg19 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3348514 INDEL_biallelic 54501 107 hg19 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1090104 SNP_multiallelic 22301 107 hg19 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 682566 INDEL_multiallelic 8563 107 hg19 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 18579225 SNP_biallelic 485370 102 hg19 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3374952 INDEL_biallelic 54628 102 hg19 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15663249 SNP_biallelic 384510 104 hg19 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3060182 INDEL_biallelic 48219 104 hg19 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1077504 SNP_multiallelic 22301 104 hg19 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 678235 INDEL_multiallelic 8563 104 hg19 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4082833 INDEL_biallelic 69108 104 hg19 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 16776958 SNP_biallelic 434484 99 hg19 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3099892 INDEL_biallelic 49550 99 hg19 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1071304 SNP_multiallelic 22301 99 hg19 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 677235 INDEL_multiallelic 8563 99 hg19 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1148759 SNP_multiallelic 22301 104 hg19 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 36318056 SNP_biallelic 851668 99 hg19 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5269956 INDEL_biallelic 83297 99 hg19 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1335440 SNP_multiallelic 22301 99 hg19 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg19/X/pop/X_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 843523 INDEL_multiallelic 8563 99 hg19 X AFR LWK 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/mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2562930 SNP_multiallelic 22301 347 hg19 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1442784 INDEL_multiallelic 8563 347 hg19 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 3600190 SNP_multiallelic 22301 504 hg19 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1897860 INDEL_multiallelic 8563 504 hg19 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 5470066 SNP_multiallelic 22301 661 hg19 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2977030 INDEL_multiallelic 8563 661 hg19 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 3849877 SNP_multiallelic 22301 489 hg19 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/X/X_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2011983 INDEL_multiallelic 8563 489 hg19 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 2552 INDEL_multiallelic 0 170 hg19 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_AMR_SNP_biallelic.no_monomorphic.vcf.gz 398808 SNP_biallelic 13483 170 hg19 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/pop/Y_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 12150 INDEL_biallelic 289 47 hg19 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/pop/Y_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 2255 SNP_multiallelic 0 47 hg19 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/pop/Y_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 84466 SNP_biallelic 3672 26 hg19 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/pop/Y_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 2198 SNP_multiallelic 0 26 hg19 Y AFR ASW 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/mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_EUR_SNP_biallelic.no_monomorphic.vcf.gz 398348 SNP_biallelic 11906 240 hg19 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2718 SNP_multiallelic 0 240 hg19 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 32803 INDEL_biallelic 572 260 hg19 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2757 INDEL_multiallelic 0 260 hg19 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_SAS_SNP_biallelic.no_monomorphic.vcf.gz 595808 SNP_biallelic 18601 260 hg19 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg19/Y/Y_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2757 SNP_multiallelic 0 260 hg19 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 931836 INDEL_multiallelic 7398 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 84535032 SNP_biallelic 1710292 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 11093114 INDEL_biallelic 152865 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 2552169 SNP_multiallelic 48793 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 2244963 SNP_multiallelic 48776 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 60391832 SNP_biallelic 1246742 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 66135508 SNP_biallelic 1522538 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 9097101 INDEL_biallelic 143475 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 794199 INDEL_multiallelic 7385 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 51381667 SNP_biallelic 1086664 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 7524295 INDEL_biallelic 103388 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 2279232 SNP_multiallelic 48754 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 829634 INDEL_multiallelic 7372 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 42824751 SNP_biallelic 889312 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6724794 INDEL_biallelic 89453 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 2263071 SNP_multiallelic 48738 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 820098 INDEL_multiallelic 7350 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 8790496 INDEL_biallelic 121128 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 49594074 SNP_biallelic 992770 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 7578246 INDEL_biallelic 98740 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 2313475 SNP_multiallelic 48744 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 856758 INDEL_multiallelic 7361 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 47016197 SNP_biallelic 958988 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 7144846 INDEL_biallelic 92326 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 2312022 SNP_multiallelic 48741 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 852411 INDEL_multiallelic 7357 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 45842151 SNP_biallelic 928936 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 7134771 INDEL_biallelic 92217 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 2315200 SNP_multiallelic 48744 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 853227 INDEL_multiallelic 7355 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 2344590 SNP_multiallelic 48768 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 864636 INDEL_multiallelic 7383 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 2364961 SNP_multiallelic 48748 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 78844514 SNP_biallelic 1556839 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 10773582 INDEL_biallelic 144615 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 2560266 SNP_multiallelic 48787 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 941254 INDEL_multiallelic 7385 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 882965 INDEL_multiallelic 7371 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 45141027 SNP_biallelic 879652 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 7342729 INDEL_biallelic 95061 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 2305170 SNP_multiallelic 48746 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 852425 INDEL_multiallelic 7360 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 46170546 SNP_biallelic 936110 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 7233307 INDEL_biallelic 96592 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 2276238 SNP_multiallelic 48736 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 830712 INDEL_multiallelic 7356 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 52219462 SNP_biallelic 1029833 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7900796 INDEL_biallelic 101619 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 2363228 SNP_multiallelic 48748 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 878314 INDEL_multiallelic 7362 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 87270700 SNP_biallelic 1663671 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 11522739 INDEL_biallelic 146769 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 2660850 SNP_multiallelic 48797 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 999190 INDEL_multiallelic 7395 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 55581234 SNP_biallelic 1098080 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 8260624 INDEL_biallelic 106472 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 2370145 SNP_multiallelic 48754 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 888181 INDEL_multiallelic 7371 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 54093212 SNP_biallelic 1086650 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 8020904 INDEL_biallelic 103635 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 44725062 SNP_biallelic 898053 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 7139133 INDEL_biallelic 91671 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 2314702 SNP_multiallelic 48749 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 855531 INDEL_multiallelic 7358 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 9835471 INDEL_biallelic 132627 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 46778002 SNP_biallelic 966717 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 7116969 INDEL_biallelic 93302 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 2295266 SNP_multiallelic 48746 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 840868 INDEL_multiallelic 7352 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 2429981 SNP_multiallelic 48772 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 84412091 SNP_biallelic 1691206 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 10946620 INDEL_biallelic 147279 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 2562417 SNP_multiallelic 48792 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 941734 INDEL_multiallelic 7393 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 911985 INDEL_multiallelic 7382 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 76231750 SNP_biallelic 1591926 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 10173729 INDEL_biallelic 144509 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 2456383 SNP_multiallelic 48787 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 884797 INDEL_multiallelic 7390 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 45199626 SNP_biallelic 1040188 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6950289 INDEL_biallelic 106399 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 2106612 SNP_multiallelic 48751 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 753012 INDEL_multiallelic 7365 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 47806005 SNP_biallelic 1030891 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 7259986 INDEL_biallelic 103136 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 2201417 SNP_multiallelic 48746 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 802699 INDEL_multiallelic 7370 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 53000924 SNP_biallelic 1084764 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7891743 INDEL_biallelic 104738 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 2336495 SNP_multiallelic 48761 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 863073 INDEL_multiallelic 7376 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 69818176 SNP_biallelic 1401623 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 54325900 SNP_biallelic 1091582 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 8029832 INDEL_biallelic 103547 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 2365444 SNP_multiallelic 48750 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 883638 INDEL_multiallelic 7370 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 53873282 SNP_biallelic 1060833 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7986220 INDEL_biallelic 101401 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 2362491 SNP_multiallelic 48744 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 887010 INDEL_multiallelic 7364 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 83532459 SNP_biallelic 1604513 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 11292002 INDEL_biallelic 147631 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 2624964 SNP_multiallelic 48793 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 973624 INDEL_multiallelic 7387 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_SNP_biallelic.no_monomorphic.vcf.gz 174804700 SNP_biallelic 1766346 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 21205954 INDEL_biallelic 127097 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_SNP_biallelic.no_monomorphic.vcf.gz 157105926 SNP_biallelic 2046136 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 19095447 INDEL_biallelic 156707 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_SNP_biallelic.no_monomorphic.vcf.gz 163516557 SNP_biallelic 1743812 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 19263695 INDEL_biallelic 113394 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_SNP_biallelic.no_monomorphic.vcf.gz 352411642 SNP_biallelic 3059226 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 36496777 INDEL_biallelic 188275 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_SNP_biallelic.no_monomorphic.vcf.gz 183702888 SNP_biallelic 1946184 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 21285272 INDEL_biallelic 128032 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 4134183 SNP_multiallelic 48782 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1959560 INDEL_multiallelic 7388 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 3613213 SNP_multiallelic 48805 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1612202 INDEL_multiallelic 7393 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 4033340 SNP_multiallelic 48782 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1879459 INDEL_multiallelic 7377 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 6017805 SNP_multiallelic 48830 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2798648 INDEL_multiallelic 7408 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 4191443 SNP_multiallelic 48796 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1974856 INDEL_multiallelic 7393 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 1013686 INDEL_multiallelic 8017 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 92287822 SNP_biallelic 1858525 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 11854253 INDEL_biallelic 164736 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1903347 SNP_multiallelic 26427 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1665481 SNP_multiallelic 26417 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 66607059 SNP_biallelic 1368810 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 72411646 SNP_biallelic 1657875 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 9696781 INDEL_biallelic 153729 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 863640 INDEL_multiallelic 8011 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 55722105 SNP_biallelic 1173569 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 7912081 INDEL_biallelic 109654 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1658369 SNP_multiallelic 26394 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 898683 INDEL_multiallelic 7991 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 45661314 SNP_biallelic 944158 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6938144 INDEL_biallelic 93239 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1632910 SNP_multiallelic 26383 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 887625 INDEL_multiallelic 7982 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 9408315 INDEL_biallelic 131027 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 53704385 SNP_biallelic 1066623 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 7977300 INDEL_biallelic 104673 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1693202 SNP_multiallelic 26394 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 931511 INDEL_multiallelic 7992 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 50119350 SNP_biallelic 1019311 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 7374258 INDEL_biallelic 96151 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1676085 SNP_multiallelic 26387 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 923079 INDEL_multiallelic 7986 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 48931584 SNP_biallelic 989365 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 7375091 INDEL_biallelic 96382 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1676869 SNP_multiallelic 26386 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 924979 INDEL_multiallelic 7987 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1728930 SNP_multiallelic 26409 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 942722 INDEL_multiallelic 8009 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1724469 SNP_multiallelic 26393 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 86180925 SNP_biallelic 1691249 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 11478888 INDEL_biallelic 155199 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1917605 SNP_multiallelic 26436 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 1025537 INDEL_multiallelic 8014 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 956264 INDEL_multiallelic 7991 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 48736419 SNP_biallelic 943591 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 7722915 INDEL_biallelic 100906 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1686334 SNP_multiallelic 26388 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 926006 INDEL_multiallelic 7988 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 50116958 SNP_biallelic 1008446 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 7637005 INDEL_biallelic 102747 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1662503 SNP_multiallelic 26392 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 904236 INDEL_multiallelic 7987 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 56461339 SNP_biallelic 1107246 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 8306956 INDEL_biallelic 107741 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1726643 SNP_multiallelic 26394 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 954240 INDEL_multiallelic 7991 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 95831392 SNP_biallelic 1819365 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 12304755 INDEL_biallelic 158088 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 2004457 SNP_multiallelic 26423 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 1089073 INDEL_multiallelic 8012 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 59727960 SNP_biallelic 1169197 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 8661593 INDEL_biallelic 112206 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1743218 SNP_multiallelic 26393 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 965389 INDEL_multiallelic 7995 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 58580537 SNP_biallelic 1173260 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 8399918 INDEL_biallelic 109550 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 47492818 SNP_biallelic 949955 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 7370707 INDEL_biallelic 95624 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1675114 SNP_multiallelic 26389 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 926634 INDEL_multiallelic 7988 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 10352787 INDEL_biallelic 140703 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 50049906 SNP_biallelic 1032186 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 7346452 INDEL_biallelic 97231 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1660981 SNP_multiallelic 26385 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 912081 INDEL_multiallelic 7982 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1800971 SNP_multiallelic 26412 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 91575384 SNP_biallelic 1823451 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 11625989 INDEL_biallelic 157200 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1917480 SNP_multiallelic 26425 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 1025063 INDEL_multiallelic 8012 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 988774 INDEL_multiallelic 8006 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 83403566 SNP_biallelic 1732649 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 10847362 INDEL_biallelic 155207 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1833572 SNP_multiallelic 26421 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 964546 INDEL_multiallelic 8014 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 48486422 SNP_biallelic 1109216 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 7289116 INDEL_biallelic 112575 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1540491 SNP_multiallelic 26403 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 817906 INDEL_multiallelic 8003 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 51329689 SNP_biallelic 1104814 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 7595125 INDEL_biallelic 109206 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1605095 SNP_multiallelic 26393 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 870023 INDEL_multiallelic 7995 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 57609629 SNP_biallelic 1175729 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 8304294 INDEL_biallelic 111296 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1700905 SNP_multiallelic 26393 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 935554 INDEL_multiallelic 7993 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 75120142 SNP_biallelic 1499756 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 58683940 SNP_biallelic 1175728 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 8417271 INDEL_biallelic 109646 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1725504 SNP_multiallelic 26393 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 956844 INDEL_multiallelic 7993 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 58486470 SNP_biallelic 1141813 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 8432836 INDEL_biallelic 107798 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1737398 SNP_multiallelic 26392 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 965128 INDEL_multiallelic 7993 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 91297464 SNP_biallelic 1744505 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 12040396 INDEL_biallelic 158659 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1975217 SNP_multiallelic 26436 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 1062079 INDEL_multiallelic 8012 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_SNP_biallelic.no_monomorphic.vcf.gz 188697603 SNP_biallelic 1899705 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 22343911 INDEL_biallelic 135339 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_SNP_biallelic.no_monomorphic.vcf.gz 170190439 SNP_biallelic 2224643 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 20189463 INDEL_biallelic 168781 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_SNP_biallelic.no_monomorphic.vcf.gz 174983382 SNP_biallelic 1893692 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 19945692 INDEL_biallelic 120255 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_SNP_biallelic.no_monomorphic.vcf.gz 384570854 SNP_biallelic 3353895 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 38922051 INDEL_biallelic 204341 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_SNP_biallelic.no_monomorphic.vcf.gz 199268662 SNP_biallelic 2130613 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 22380026 INDEL_biallelic 137399 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 3269188 SNP_multiallelic 26417 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 2132171 INDEL_multiallelic 8004 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2817712 SNP_multiallelic 26443 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1752153 INDEL_multiallelic 8016 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 3111235 SNP_multiallelic 26408 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2034780 INDEL_multiallelic 7998 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4950109 SNP_multiallelic 26465 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 3059755 INDEL_multiallelic 8021 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 3272278 SNP_multiallelic 26419 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2136561 INDEL_multiallelic 8001 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 866357 INDEL_multiallelic 6859 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 76940479 SNP_biallelic 1549844 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9973214 INDEL_biallelic 138864 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1621486 SNP_multiallelic 22159 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 738987 INDEL_multiallelic 6859 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 56167870 SNP_biallelic 1156870 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 60248217 SNP_biallelic 1381998 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 8160894 INDEL_biallelic 129826 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1417400 SNP_multiallelic 22158 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 46771869 SNP_biallelic 985206 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6669976 INDEL_biallelic 92646 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1415444 SNP_multiallelic 22122 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 772009 INDEL_multiallelic 6848 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 38934188 SNP_biallelic 805869 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5930248 INDEL_biallelic 79945 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1398183 SNP_multiallelic 22126 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 765392 INDEL_multiallelic 6839 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7967957 INDEL_biallelic 111410 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 44853401 SNP_biallelic 893711 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6685468 INDEL_biallelic 88002 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1440806 SNP_multiallelic 22124 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 800839 INDEL_multiallelic 6845 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 42653017 SNP_biallelic 867549 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6316255 INDEL_biallelic 82763 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1433408 SNP_multiallelic 22119 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 793561 INDEL_multiallelic 6839 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 41409403 SNP_biallelic 837738 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6278605 INDEL_biallelic 82293 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1434570 SNP_multiallelic 22125 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 794104 INDEL_multiallelic 6839 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1473685 SNP_multiallelic 22142 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 810051 INDEL_multiallelic 6857 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1476715 SNP_multiallelic 22123 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 71956698 SNP_biallelic 1414105 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 9680675 INDEL_biallelic 131241 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1633327 SNP_multiallelic 22161 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 876698 INDEL_multiallelic 6854 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 820977 INDEL_multiallelic 6850 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 40608574 SNP_biallelic 789227 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6463230 INDEL_biallelic 84658 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1434057 SNP_multiallelic 22118 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 796496 INDEL_multiallelic 6841 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 41873508 SNP_biallelic 846099 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6386202 INDEL_biallelic 86150 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1411594 SNP_multiallelic 22118 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 776537 INDEL_multiallelic 6844 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 47391413 SNP_biallelic 929918 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6989643 INDEL_biallelic 90960 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1475973 SNP_multiallelic 22128 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 818165 INDEL_multiallelic 6847 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 80179288 SNP_biallelic 1522121 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10398726 INDEL_biallelic 133869 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1710010 SNP_multiallelic 22157 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 931757 INDEL_multiallelic 6859 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 50153278 SNP_biallelic 985010 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7294203 INDEL_biallelic 95070 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1485646 SNP_multiallelic 22129 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 830678 INDEL_multiallelic 6848 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 49296274 SNP_biallelic 987545 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7094626 INDEL_biallelic 92750 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 40340423 SNP_biallelic 808330 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6296847 INDEL_biallelic 82000 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1434700 SNP_multiallelic 22122 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 797882 INDEL_multiallelic 6844 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 8710235 INDEL_biallelic 118575 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 42391847 SNP_biallelic 874536 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6268978 INDEL_biallelic 83219 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1420790 SNP_multiallelic 22120 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 785384 INDEL_multiallelic 6842 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1536506 SNP_multiallelic 22154 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 76773864 SNP_biallelic 1530299 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 9804079 INDEL_biallelic 132967 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1636663 SNP_multiallelic 22164 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 877493 INDEL_multiallelic 6858 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 849246 INDEL_multiallelic 6857 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 69585251 SNP_biallelic 1447519 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9155079 INDEL_biallelic 131417 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1560848 SNP_multiallelic 22155 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 823860 INDEL_multiallelic 6856 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 40569226 SNP_biallelic 929868 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6125697 INDEL_biallelic 94754 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1310382 SNP_multiallelic 22128 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 701171 INDEL_multiallelic 6850 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 44798925 SNP_biallelic 967331 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6586933 INDEL_biallelic 95301 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1374737 SNP_multiallelic 22128 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 750087 INDEL_multiallelic 6856 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 48542109 SNP_biallelic 991636 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7010265 INDEL_biallelic 94190 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1453689 SNP_multiallelic 22126 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 803580 INDEL_multiallelic 6852 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 62779092 SNP_biallelic 1253646 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 49338330 SNP_biallelic 988798 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7101511 INDEL_biallelic 92765 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1476801 SNP_multiallelic 22135 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 822575 INDEL_multiallelic 6857 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 48789175 SNP_biallelic 956707 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7059668 INDEL_biallelic 90793 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1476475 SNP_multiallelic 22127 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 827762 INDEL_multiallelic 6848 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 76514210 SNP_biallelic 1465201 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10186253 INDEL_biallelic 134788 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1682761 SNP_multiallelic 22162 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 908771 INDEL_multiallelic 6860 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_SNP_biallelic.no_monomorphic.vcf.gz 158823318 SNP_biallelic 1588458 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 18840563 INDEL_biallelic 114593 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_SNP_biallelic.no_monomorphic.vcf.gz 143846570 SNP_biallelic 1863519 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 17147341 INDEL_biallelic 143022 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_SNP_biallelic.no_monomorphic.vcf.gz 148507561 SNP_biallelic 1576456 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 17051638 INDEL_biallelic 102305 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_SNP_biallelic.no_monomorphic.vcf.gz 322010409 SNP_biallelic 2766747 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 32889090 INDEL_biallelic 171413 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_SNP_biallelic.no_monomorphic.vcf.gz 167963814 SNP_biallelic 1770747 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 18927313 INDEL_biallelic 115684 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2804597 SNP_multiallelic 22152 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1841846 INDEL_multiallelic 6857 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2424412 SNP_multiallelic 22178 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1513469 INDEL_multiallelic 6865 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2698204 SNP_multiallelic 22152 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1763031 INDEL_multiallelic 6853 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4256013 SNP_multiallelic 22198 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2621535 INDEL_multiallelic 6867 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2833540 SNP_multiallelic 22154 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1844768 INDEL_multiallelic 6864 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 913745 INDEL_multiallelic 7240 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 77661833 SNP_biallelic 1578589 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 10158047 INDEL_biallelic 143091 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1647242 SNP_multiallelic 22475 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1443297 SNP_multiallelic 22469 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 55653329 SNP_biallelic 1156837 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 60770720 SNP_biallelic 1406940 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 8308034 INDEL_biallelic 133258 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 778257 INDEL_multiallelic 7238 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 47092771 SNP_biallelic 1002134 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6794657 INDEL_biallelic 95444 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1445295 SNP_multiallelic 22449 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 813597 INDEL_multiallelic 7228 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 39031500 SNP_biallelic 814124 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5992310 INDEL_biallelic 81463 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1427711 SNP_multiallelic 22446 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 807197 INDEL_multiallelic 7216 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7941582 INDEL_biallelic 111915 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 45408172 SNP_biallelic 914735 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6782977 INDEL_biallelic 90416 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1472229 SNP_multiallelic 22453 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 840189 INDEL_multiallelic 7223 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 42681168 SNP_biallelic 873939 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6356471 INDEL_biallelic 83723 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1464205 SNP_multiallelic 22451 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 838504 INDEL_multiallelic 7226 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 41718974 SNP_biallelic 850102 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6356795 INDEL_biallelic 83821 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1466047 SNP_multiallelic 22450 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 839461 INDEL_multiallelic 7224 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1500558 SNP_multiallelic 22459 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 848845 INDEL_multiallelic 7230 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1509057 SNP_multiallelic 22450 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 72920107 SNP_biallelic 1447813 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 9873383 INDEL_biallelic 135385 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1662390 SNP_multiallelic 22478 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 924097 INDEL_multiallelic 7231 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 866594 INDEL_multiallelic 7227 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 41427628 SNP_biallelic 815973 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6582253 INDEL_biallelic 87369 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1467220 SNP_multiallelic 22449 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 836831 INDEL_multiallelic 7219 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 42209747 SNP_biallelic 861949 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6475764 INDEL_biallelic 88343 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1444780 SNP_multiallelic 22452 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 815958 INDEL_multiallelic 7223 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 47772389 SNP_biallelic 946604 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7111685 INDEL_biallelic 93570 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1508491 SNP_multiallelic 22452 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 863925 INDEL_multiallelic 7228 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 80831389 SNP_biallelic 1548007 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10556888 INDEL_biallelic 137430 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1736437 SNP_multiallelic 22481 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 981697 INDEL_multiallelic 7242 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 50800326 SNP_biallelic 1006736 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7394948 INDEL_biallelic 97315 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1520723 SNP_multiallelic 22455 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 872594 INDEL_multiallelic 7225 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 49804166 SNP_biallelic 1006670 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7225881 INDEL_biallelic 95488 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 40202825 SNP_biallelic 811697 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6311366 INDEL_biallelic 82874 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1462693 SNP_multiallelic 22448 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 839625 INDEL_multiallelic 7221 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 8840948 INDEL_biallelic 121790 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 42558552 SNP_biallelic 883731 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6343270 INDEL_biallelic 84820 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1451134 SNP_multiallelic 22447 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 827240 INDEL_multiallelic 7222 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1567591 SNP_multiallelic 22466 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 77028166 SNP_biallelic 1549292 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 9968327 INDEL_biallelic 136739 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1660501 SNP_multiallelic 22479 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 923489 INDEL_multiallelic 7236 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 894925 INDEL_multiallelic 7237 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 70484216 SNP_biallelic 1480230 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9319844 INDEL_biallelic 135034 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1589384 SNP_multiallelic 22479 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 868105 INDEL_multiallelic 7238 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 40484827 SNP_biallelic 939938 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6164911 INDEL_biallelic 96293 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1334823 SNP_multiallelic 22450 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 735252 INDEL_multiallelic 7226 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 44365767 SNP_biallelic 965647 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6588468 INDEL_biallelic 96010 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1400448 SNP_multiallelic 22452 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 786449 INDEL_multiallelic 7229 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 48943518 SNP_biallelic 1008001 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7118823 INDEL_biallelic 96545 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1484902 SNP_multiallelic 22452 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 846796 INDEL_multiallelic 7228 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 63436883 SNP_biallelic 1280544 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 49955270 SNP_biallelic 1011687 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7233029 INDEL_biallelic 95524 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1510225 SNP_multiallelic 22451 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 867028 INDEL_multiallelic 7228 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 49408119 SNP_biallelic 976844 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7183449 INDEL_biallelic 93399 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1514190 SNP_multiallelic 22458 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 870878 INDEL_multiallelic 7224 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 77029758 SNP_biallelic 1486532 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10342702 INDEL_biallelic 138237 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1713379 SNP_multiallelic 22479 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 956352 INDEL_multiallelic 7235 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_SNP_biallelic.no_monomorphic.vcf.gz 159871893 SNP_biallelic 1587634 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 19025832 INDEL_biallelic 116443 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_SNP_biallelic.no_monomorphic.vcf.gz 143392369 SNP_biallelic 1856270 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 17212911 INDEL_biallelic 144856 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_SNP_biallelic.no_monomorphic.vcf.gz 148350280 SNP_biallelic 1553683 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 17216095 INDEL_biallelic 103684 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_SNP_biallelic.no_monomorphic.vcf.gz 325036366 SNP_biallelic 2765713 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 33466859 INDEL_biallelic 175875 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_SNP_biallelic.no_monomorphic.vcf.gz 168912014 SNP_biallelic 1765724 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 19224068 INDEL_biallelic 118672 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2881194 SNP_multiallelic 22477 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1938186 INDEL_multiallelic 7232 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2472346 SNP_multiallelic 22486 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1590402 INDEL_multiallelic 7245 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2764357 SNP_multiallelic 22476 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1868312 INDEL_multiallelic 7240 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4327696 SNP_multiallelic 22513 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2774923 INDEL_multiallelic 7251 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2906334 SNP_multiallelic 22471 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1952403 INDEL_multiallelic 7236 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 808236 INDEL_multiallelic 6399 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 69685143 SNP_biallelic 1412848 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9157149 INDEL_biallelic 128123 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1488738 SNP_multiallelic 20555 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 687821 INDEL_multiallelic 6399 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 50224011 SNP_biallelic 1041845 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 54263561 SNP_biallelic 1250879 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7476284 INDEL_biallelic 119275 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1303589 SNP_multiallelic 20556 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 40884250 SNP_biallelic 866326 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5994906 INDEL_biallelic 83280 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1294128 SNP_multiallelic 20542 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 714390 INDEL_multiallelic 6388 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 33514804 SNP_biallelic 699178 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5254559 INDEL_biallelic 70849 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1272147 SNP_multiallelic 20532 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 704526 INDEL_multiallelic 6374 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7244261 INDEL_biallelic 101662 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 39798918 SNP_biallelic 795042 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6077314 INDEL_biallelic 80036 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1323057 SNP_multiallelic 20539 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 742778 INDEL_multiallelic 6384 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 36687169 SNP_biallelic 752836 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5592442 INDEL_biallelic 73153 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1305789 SNP_multiallelic 20526 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 731810 INDEL_multiallelic 6371 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 35883134 SNP_biallelic 732315 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5586006 INDEL_biallelic 73248 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1305021 SNP_multiallelic 20527 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 732439 INDEL_multiallelic 6370 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1350864 SNP_multiallelic 20546 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 750265 INDEL_multiallelic 6396 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1350263 SNP_multiallelic 20543 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 65265029 SNP_biallelic 1289637 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8888408 INDEL_biallelic 120975 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1502877 SNP_multiallelic 20559 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 819025 INDEL_multiallelic 6400 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 760686 INDEL_multiallelic 6391 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 36120491 SNP_biallelic 705130 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5866778 INDEL_biallelic 76822 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1316845 SNP_multiallelic 20533 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 738890 INDEL_multiallelic 6383 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 37200468 SNP_biallelic 754139 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5813662 INDEL_biallelic 78477 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1297450 SNP_multiallelic 20532 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 721147 INDEL_multiallelic 6385 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 41774737 SNP_biallelic 824220 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6328154 INDEL_biallelic 82335 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1347598 SNP_multiallelic 20538 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 758548 INDEL_multiallelic 6385 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 72346118 SNP_biallelic 1380628 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9506930 INDEL_biallelic 122895 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1569570 SNP_multiallelic 20558 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 870050 INDEL_multiallelic 6405 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 44622532 SNP_biallelic 879962 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6636759 INDEL_biallelic 86569 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1360716 SNP_multiallelic 20539 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 768756 INDEL_multiallelic 6386 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 43400611 SNP_biallelic 874195 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6411299 INDEL_biallelic 83774 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 34713843 SNP_biallelic 701200 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5581946 INDEL_biallelic 72716 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1305407 SNP_multiallelic 20529 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 734015 INDEL_multiallelic 6368 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7899662 INDEL_biallelic 107947 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 36703659 SNP_biallelic 764152 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5568700 INDEL_biallelic 74030 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1293513 SNP_multiallelic 20525 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 723080 INDEL_multiallelic 6378 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1405477 SNP_multiallelic 20554 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 68972440 SNP_biallelic 1382197 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8988309 INDEL_biallelic 122482 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1501594 SNP_multiallelic 20556 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 818265 INDEL_multiallelic 6403 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 786744 INDEL_multiallelic 6398 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 62784269 SNP_biallelic 1312466 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8370144 INDEL_biallelic 120535 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1436424 SNP_multiallelic 20556 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 769007 INDEL_multiallelic 6405 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 36334556 SNP_biallelic 838122 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5602081 INDEL_biallelic 86966 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1201447 SNP_multiallelic 20539 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 649644 INDEL_multiallelic 6394 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 36978195 SNP_biallelic 800643 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5663897 INDEL_biallelic 81381 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1247191 SNP_multiallelic 20533 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 687535 INDEL_multiallelic 6385 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 42454314 SNP_biallelic 870580 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6301209 INDEL_biallelic 84483 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1328395 SNP_multiallelic 20538 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 743769 INDEL_multiallelic 6389 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 55549215 SNP_biallelic 1115691 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 43429611 SNP_biallelic 875748 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6430025 INDEL_biallelic 84113 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1349271 SNP_multiallelic 20539 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 760076 INDEL_multiallelic 6386 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 43177605 SNP_biallelic 847954 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6418828 INDEL_biallelic 82450 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1354569 SNP_multiallelic 20535 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 768018 INDEL_multiallelic 6383 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 68988064 SNP_biallelic 1325924 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9317195 INDEL_biallelic 123615 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1548624 SNP_multiallelic 20557 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 848980 INDEL_multiallelic 6400 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_SNP_biallelic.no_monomorphic.vcf.gz 141084800 SNP_biallelic 1416764 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17127672 INDEL_biallelic 103895 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_SNP_biallelic.no_monomorphic.vcf.gz 127245843 SNP_biallelic 1666269 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15513956 INDEL_biallelic 130272 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_SNP_biallelic.no_monomorphic.vcf.gz 129585164 SNP_biallelic 1388779 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 15255694 INDEL_biallelic 91220 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_SNP_biallelic.no_monomorphic.vcf.gz 290285480 SNP_biallelic 2514693 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 30109066 INDEL_biallelic 158240 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_SNP_biallelic.no_monomorphic.vcf.gz 148060053 SNP_biallelic 1570857 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 17138991 INDEL_biallelic 104768 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2565897 SNP_multiallelic 20555 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1708931 INDEL_multiallelic 6393 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2205376 SNP_multiallelic 20566 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1396543 INDEL_multiallelic 6407 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2432969 SNP_multiallelic 20546 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1618619 INDEL_multiallelic 6387 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3909056 SNP_multiallelic 20587 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2455077 INDEL_multiallelic 6409 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2573708 SNP_multiallelic 20563 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1705987 INDEL_multiallelic 6395 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 826192 INDEL_multiallelic 6460 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 68450266 SNP_biallelic 1385759 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9099546 INDEL_biallelic 127044 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1534116 SNP_multiallelic 21305 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1342343 SNP_multiallelic 21293 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 50709961 SNP_biallelic 1044643 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 54143609 SNP_biallelic 1251666 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7484945 INDEL_biallelic 119264 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 703687 INDEL_multiallelic 6460 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 42773844 SNP_biallelic 904689 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6202820 INDEL_biallelic 86303 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1359560 SNP_multiallelic 21268 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 737901 INDEL_multiallelic 6451 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 35472113 SNP_biallelic 737388 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5492355 INDEL_biallelic 74157 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1339645 SNP_multiallelic 21259 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 733473 INDEL_multiallelic 6440 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7295600 INDEL_biallelic 101727 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 41296856 SNP_biallelic 823577 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6201425 INDEL_biallelic 81628 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1386811 SNP_multiallelic 21267 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 765992 INDEL_multiallelic 6446 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 39684451 SNP_biallelic 807010 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5929968 INDEL_biallelic 77823 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1385382 SNP_multiallelic 21260 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 763996 INDEL_multiallelic 6447 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 38131870 SNP_biallelic 773300 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5837321 INDEL_biallelic 76635 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1378639 SNP_multiallelic 21259 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 763747 INDEL_multiallelic 6444 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1412977 SNP_multiallelic 21280 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 773235 INDEL_multiallelic 6455 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1420173 SNP_multiallelic 21267 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 63910632 SNP_biallelic 1263729 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8797456 INDEL_biallelic 119496 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1540720 SNP_multiallelic 21299 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 834837 INDEL_multiallelic 6452 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 786003 INDEL_multiallelic 6449 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 37951623 SNP_biallelic 742425 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6041636 INDEL_biallelic 79406 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1379314 SNP_multiallelic 21263 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 762458 INDEL_multiallelic 6446 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 38798735 SNP_biallelic 785888 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5968808 INDEL_biallelic 80673 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1360375 SNP_multiallelic 21258 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 742637 INDEL_multiallelic 6444 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 43455640 SNP_biallelic 855937 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6501838 INDEL_biallelic 84885 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1419051 SNP_multiallelic 21267 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 783244 INDEL_multiallelic 6443 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 71495286 SNP_biallelic 1364308 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9480445 INDEL_biallelic 122504 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1619657 SNP_multiallelic 21306 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 887785 INDEL_multiallelic 6459 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 46250856 SNP_biallelic 906935 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6792164 INDEL_biallelic 88350 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1431403 SNP_multiallelic 21264 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 795297 INDEL_multiallelic 6449 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 45014658 SNP_biallelic 900880 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6600720 INDEL_biallelic 86399 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 37107642 SNP_biallelic 743582 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5827924 INDEL_biallelic 75876 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1381038 SNP_multiallelic 21257 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 763755 INDEL_multiallelic 6440 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7903339 INDEL_biallelic 107058 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 39389744 SNP_biallelic 813003 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5864365 INDEL_biallelic 77997 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1369392 SNP_multiallelic 21259 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 753985 INDEL_multiallelic 6447 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1468475 SNP_multiallelic 21282 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 68093096 SNP_biallelic 1364218 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8915175 INDEL_biallelic 121130 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1542714 SNP_multiallelic 21302 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 835194 INDEL_multiallelic 6456 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 809690 INDEL_multiallelic 6456 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 61954358 SNP_biallelic 1295852 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8332066 INDEL_biallelic 119681 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1474926 SNP_multiallelic 21299 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 783599 INDEL_multiallelic 6455 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 37407328 SNP_biallelic 863897 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5717246 INDEL_biallelic 88651 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1254777 SNP_multiallelic 21269 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 669882 INDEL_multiallelic 6454 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 39837981 SNP_biallelic 859974 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5974417 INDEL_biallelic 86030 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1313296 SNP_multiallelic 21266 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 713381 INDEL_multiallelic 6448 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 44030134 SNP_biallelic 899852 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6494683 INDEL_biallelic 87230 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1393842 SNP_multiallelic 21267 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 767642 INDEL_multiallelic 6450 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 55763774 SNP_biallelic 1111557 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 45320221 SNP_biallelic 909396 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6629869 INDEL_biallelic 86823 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1420409 SNP_multiallelic 21267 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 786023 INDEL_multiallelic 6446 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 45385592 SNP_biallelic 889627 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6618337 INDEL_biallelic 85193 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1424973 SNP_multiallelic 21267 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 793519 INDEL_multiallelic 6448 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 67560067 SNP_biallelic 1298116 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9218228 INDEL_biallelic 122089 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1589548 SNP_multiallelic 21298 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 863803 INDEL_multiallelic 6454 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_SNP_biallelic.no_monomorphic.vcf.gz 146481567 SNP_biallelic 1422389 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17590093 INDEL_biallelic 105588 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_SNP_biallelic.no_monomorphic.vcf.gz 128730219 SNP_biallelic 1637190 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15650047 INDEL_biallelic 129244 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_SNP_biallelic.no_monomorphic.vcf.gz 137517242 SNP_biallelic 1418658 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 16018831 INDEL_biallelic 95468 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_SNP_biallelic.no_monomorphic.vcf.gz 286999122 SNP_biallelic 2434713 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 29950267 INDEL_biallelic 156217 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_SNP_biallelic.no_monomorphic.vcf.gz 152829210 SNP_biallelic 1566580 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 17639671 INDEL_biallelic 106961 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2764112 SNP_multiallelic 21289 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1777494 INDEL_multiallelic 6454 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2347165 SNP_multiallelic 21316 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1448641 INDEL_multiallelic 6461 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2659277 SNP_multiallelic 21284 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1713428 INDEL_multiallelic 6456 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4034485 SNP_multiallelic 21341 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2506218 INDEL_multiallelic 6464 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2778185 SNP_multiallelic 21293 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1778152 INDEL_multiallelic 6458 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 690783 INDEL_multiallelic 5478 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 63829859 SNP_biallelic 1281777 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 7988760 INDEL_biallelic 110800 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1379958 SNP_multiallelic 19759 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1210127 SNP_multiallelic 19743 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 46175058 SNP_biallelic 945267 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 50519792 SNP_biallelic 1156171 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 6588318 INDEL_biallelic 104561 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 589230 INDEL_multiallelic 5473 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 38530829 SNP_biallelic 805023 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5369524 INDEL_biallelic 73866 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1204527 SNP_multiallelic 19696 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 613396 INDEL_multiallelic 5454 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 32003149 SNP_biallelic 655021 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4785266 INDEL_biallelic 63701 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1189200 SNP_multiallelic 19688 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 610129 INDEL_multiallelic 5445 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 6373653 INDEL_biallelic 88279 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 37261927 SNP_biallelic 736741 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 5429754 INDEL_biallelic 70926 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1229023 SNP_multiallelic 19691 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 634112 INDEL_multiallelic 5443 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 35174736 SNP_biallelic 706884 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5099729 INDEL_biallelic 65932 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1220080 SNP_multiallelic 19690 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 632977 INDEL_multiallelic 5448 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 34169823 SNP_biallelic 682811 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5067822 INDEL_biallelic 65425 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1220794 SNP_multiallelic 19695 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 634711 INDEL_multiallelic 5446 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1254775 SNP_multiallelic 19725 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 642973 INDEL_multiallelic 5464 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1257126 SNP_multiallelic 19698 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 60010181 SNP_biallelic 1177530 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 7766071 INDEL_biallelic 104992 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1390038 SNP_multiallelic 19750 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 698481 INDEL_multiallelic 5473 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 653092 INDEL_multiallelic 5454 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 34073591 SNP_biallelic 656731 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5273834 INDEL_biallelic 68434 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1223474 SNP_multiallelic 19690 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 632665 INDEL_multiallelic 5449 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 34638789 SNP_biallelic 693985 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5183650 INDEL_biallelic 69337 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1204742 SNP_multiallelic 19695 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 614984 INDEL_multiallelic 5444 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 39326902 SNP_biallelic 765860 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5665609 INDEL_biallelic 73007 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1256383 SNP_multiallelic 19700 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 650161 INDEL_multiallelic 5451 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 66626670 SNP_biallelic 1260435 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 8334322 INDEL_biallelic 106948 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1452786 SNP_multiallelic 19755 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 742498 INDEL_multiallelic 5476 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 42056188 SNP_biallelic 821150 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5955510 INDEL_biallelic 77057 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1266213 SNP_multiallelic 19704 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 658288 INDEL_multiallelic 5448 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 40853668 SNP_biallelic 811392 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5735247 INDEL_biallelic 74119 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 33179110 SNP_biallelic 656605 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5063274 INDEL_biallelic 65037 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1220905 SNP_multiallelic 19697 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 635258 INDEL_multiallelic 5443 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7020895 INDEL_biallelic 95151 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 34961664 SNP_biallelic 713207 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5061029 INDEL_biallelic 66339 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1209658 SNP_multiallelic 19694 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 626091 INDEL_multiallelic 5446 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1307576 SNP_multiallelic 19729 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 63726879 SNP_biallelic 1267146 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7881624 INDEL_biallelic 106571 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1389973 SNP_multiallelic 19750 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 700239 INDEL_multiallelic 5476 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 674608 INDEL_multiallelic 5468 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 58332436 SNP_biallelic 1211063 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 7359844 INDEL_biallelic 105216 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1331548 SNP_multiallelic 19752 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 658156 INDEL_multiallelic 5476 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 34117562 SNP_biallelic 777126 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5009889 INDEL_biallelic 77014 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1118613 SNP_multiallelic 19703 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 558910 INDEL_multiallelic 5451 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 35145360 SNP_biallelic 749694 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5123394 INDEL_biallelic 72840 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1164774 SNP_multiallelic 19702 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 593277 INDEL_multiallelic 5452 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 39867535 SNP_biallelic 807256 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 5637398 INDEL_biallelic 74873 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1236109 SNP_multiallelic 19693 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 638809 INDEL_multiallelic 5455 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 52203502 SNP_biallelic 1039490 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 40809260 SNP_biallelic 810540 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5746247 INDEL_biallelic 74292 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1256373 SNP_multiallelic 19693 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 652838 INDEL_multiallelic 5454 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 40881795 SNP_biallelic 796315 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5778540 INDEL_biallelic 73696 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1261580 SNP_multiallelic 19697 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 657821 INDEL_multiallelic 5450 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 63473599 SNP_biallelic 1211069 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 8151302 INDEL_biallelic 107425 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1432689 SNP_multiallelic 19748 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 723226 INDEL_multiallelic 5474 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_SNP_biallelic.no_monomorphic.vcf.gz 131744099 SNP_biallelic 1303847 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 15299529 INDEL_biallelic 91921 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_SNP_biallelic.no_monomorphic.vcf.gz 117898373 SNP_biallelic 1519248 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 13717729 INDEL_biallelic 113471 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_SNP_biallelic.no_monomorphic.vcf.gz 122246073 SNP_biallelic 1274678 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 13798973 INDEL_biallelic 81257 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_SNP_biallelic.no_monomorphic.vcf.gz 266094743 SNP_biallelic 2280834 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 26253149 INDEL_biallelic 136855 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_SNP_biallelic.no_monomorphic.vcf.gz 137767389 SNP_biallelic 1432947 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 15244226 INDEL_biallelic 91868 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2367011 SNP_multiallelic 19730 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1457693 INDEL_multiallelic 5467 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2042945 SNP_multiallelic 19763 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1200993 INDEL_multiallelic 5479 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2269190 SNP_multiallelic 19727 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1410577 INDEL_multiallelic 5464 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3574518 SNP_multiallelic 19798 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2087380 INDEL_multiallelic 5495 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2382772 SNP_multiallelic 19727 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1463722 INDEL_multiallelic 5469 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 627714 INDEL_multiallelic 4955 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 61671030 SNP_biallelic 1247559 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 7110487 INDEL_biallelic 99195 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1416511 SNP_multiallelic 19873 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1235757 SNP_multiallelic 19863 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 43271649 SNP_biallelic 893010 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 47762986 SNP_biallelic 1098735 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5771904 INDEL_biallelic 91867 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 532918 INDEL_multiallelic 4954 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 36209657 SNP_biallelic 763037 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4627514 INDEL_biallelic 64018 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1232448 SNP_multiallelic 19834 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 553998 INDEL_multiallelic 4942 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 29572502 SNP_biallelic 611088 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4053036 INDEL_biallelic 54173 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1212750 SNP_multiallelic 19827 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 548677 INDEL_multiallelic 4936 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5528961 INDEL_biallelic 77300 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 34846535 SNP_biallelic 694469 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4654579 INDEL_biallelic 61199 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1253282 SNP_multiallelic 19830 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 573495 INDEL_multiallelic 4947 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 32493685 SNP_biallelic 661247 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4321543 INDEL_biallelic 56223 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1245595 SNP_multiallelic 19827 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 569787 INDEL_multiallelic 4939 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 31448933 SNP_biallelic 635641 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4288834 INDEL_biallelic 55772 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1245496 SNP_multiallelic 19828 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 569349 INDEL_multiallelic 4935 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1278567 SNP_multiallelic 19848 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 580202 INDEL_multiallelic 4950 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1286364 SNP_multiallelic 19834 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 57460786 SNP_biallelic 1133740 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6888485 INDEL_biallelic 93546 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1427243 SNP_multiallelic 19861 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 635230 INDEL_multiallelic 4955 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 589939 INDEL_multiallelic 4942 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 31776767 SNP_biallelic 618386 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4515411 INDEL_biallelic 59117 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1246455 SNP_multiallelic 19826 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 569918 INDEL_multiallelic 4942 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 32491444 SNP_biallelic 656685 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4448857 INDEL_biallelic 59918 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1229497 SNP_multiallelic 19824 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 554901 INDEL_multiallelic 4940 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 36855014 SNP_biallelic 724144 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4883854 INDEL_biallelic 63442 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1284019 SNP_multiallelic 19838 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 588872 INDEL_multiallelic 4941 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 64280773 SNP_biallelic 1223960 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7418569 INDEL_biallelic 95647 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1494122 SNP_multiallelic 19870 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 674539 INDEL_multiallelic 4956 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 38993389 SNP_biallelic 766988 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5076362 INDEL_biallelic 66091 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1289340 SNP_multiallelic 19834 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 591719 INDEL_multiallelic 4941 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 38485258 SNP_biallelic 771536 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4955696 INDEL_biallelic 64561 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 30639221 SNP_biallelic 612061 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4300181 INDEL_biallelic 55523 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1246546 SNP_multiallelic 19828 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 570696 INDEL_multiallelic 4931 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6205153 INDEL_biallelic 84723 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 32251137 SNP_biallelic 665637 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4281052 INDEL_biallelic 56418 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1233114 SNP_multiallelic 19835 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 563015 INDEL_multiallelic 4938 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1342274 SNP_multiallelic 19859 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 61508345 SNP_biallelic 1231699 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7000765 INDEL_biallelic 95190 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1428971 SNP_multiallelic 19870 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 635569 INDEL_multiallelic 4956 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 612422 INDEL_multiallelic 4953 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 55677967 SNP_biallelic 1162036 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6520013 INDEL_biallelic 93592 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1365216 SNP_multiallelic 19860 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 596826 INDEL_multiallelic 4955 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 31342075 SNP_biallelic 720073 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4256961 INDEL_biallelic 65847 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1138332 SNP_multiallelic 19832 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 502241 INDEL_multiallelic 4945 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 33904408 SNP_biallelic 733000 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4499687 INDEL_biallelic 64932 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1192107 SNP_multiallelic 19836 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 536369 INDEL_multiallelic 4946 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 37604158 SNP_biallelic 767826 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4872021 INDEL_biallelic 65213 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1265057 SNP_multiallelic 19836 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 577481 INDEL_multiallelic 4948 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 50078252 SNP_biallelic 1003541 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 38481141 SNP_biallelic 770722 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4961565 INDEL_biallelic 64576 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1285843 SNP_multiallelic 19834 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 590004 INDEL_multiallelic 4941 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 38097881 SNP_biallelic 748159 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4933752 INDEL_biallelic 63365 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1285015 SNP_multiallelic 19837 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 592843 INDEL_multiallelic 4944 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 60403054 SNP_biallelic 1158853 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 7196431 INDEL_biallelic 95224 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1468935 SNP_multiallelic 19864 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 658240 INDEL_multiallelic 4958 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_SNP_biallelic.no_monomorphic.vcf.gz 123041751 SNP_biallelic 1238596 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13061211 INDEL_biallelic 79577 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_SNP_biallelic.no_monomorphic.vcf.gz 111926658 SNP_biallelic 1461016 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11968610 INDEL_biallelic 100466 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_SNP_biallelic.no_monomorphic.vcf.gz 114134221 SNP_biallelic 1220013 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11762492 INDEL_biallelic 70202 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_SNP_biallelic.no_monomorphic.vcf.gz 255912022 SNP_biallelic 2219044 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 23246954 INDEL_biallelic 121867 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_SNP_biallelic.no_monomorphic.vcf.gz 130684395 SNP_biallelic 1382244 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13209863 INDEL_biallelic 80753 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2426652 SNP_multiallelic 19853 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1311441 INDEL_multiallelic 4952 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2101895 SNP_multiallelic 19877 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1084283 INDEL_multiallelic 4956 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2331923 SNP_multiallelic 19851 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1261110 INDEL_multiallelic 4946 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3715213 SNP_multiallelic 19897 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1905933 INDEL_multiallelic 4962 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2460468 SNP_multiallelic 19860 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1325007 INDEL_multiallelic 4953 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 493823 INDEL_multiallelic 3962 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 47535078 SNP_biallelic 948893 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5819697 INDEL_biallelic 80156 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1031668 SNP_multiallelic 14322 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 421041 INDEL_multiallelic 3962 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 34299193 SNP_biallelic 695683 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 37103561 SNP_biallelic 840873 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4749859 INDEL_biallelic 74650 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 901947 SNP_multiallelic 14313 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 29102085 SNP_biallelic 602961 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3967907 INDEL_biallelic 54084 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 905077 SNP_multiallelic 14303 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 440097 INDEL_multiallelic 3957 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 24354027 SNP_biallelic 494152 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3565180 INDEL_biallelic 46954 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 894495 SNP_multiallelic 14299 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 436406 INDEL_multiallelic 3946 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4644834 INDEL_biallelic 63826 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 27797732 SNP_biallelic 543697 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3957305 INDEL_biallelic 51035 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 921446 SNP_multiallelic 14298 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 454179 INDEL_multiallelic 3955 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 26650168 SNP_biallelic 531662 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3777591 INDEL_biallelic 48276 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 915794 SNP_multiallelic 14295 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 453855 INDEL_multiallelic 3952 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 25856638 SNP_biallelic 512724 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3759602 INDEL_biallelic 48084 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 916645 SNP_multiallelic 14300 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 454431 INDEL_multiallelic 3954 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 938818 SNP_multiallelic 14309 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 459190 INDEL_multiallelic 3955 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 946167 SNP_multiallelic 14307 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 44265372 SNP_biallelic 860633 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5624449 INDEL_biallelic 75286 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1039255 SNP_multiallelic 14321 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 499274 INDEL_multiallelic 3963 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 468857 INDEL_multiallelic 3958 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 25375139 SNP_biallelic 483709 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3848642 INDEL_biallelic 49344 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 918096 SNP_multiallelic 14293 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 452870 INDEL_multiallelic 3955 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 26051156 SNP_biallelic 516272 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3796872 INDEL_biallelic 50227 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 904032 SNP_multiallelic 14299 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 441406 INDEL_multiallelic 3958 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 29701525 SNP_biallelic 572311 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4194614 INDEL_biallelic 53537 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 945382 SNP_multiallelic 14304 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 467718 INDEL_multiallelic 3959 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 49453774 SNP_biallelic 929976 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6049542 INDEL_biallelic 76938 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1085928 SNP_multiallelic 14327 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 530393 INDEL_multiallelic 3964 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 31469588 SNP_biallelic 608431 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4349436 INDEL_biallelic 55734 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 949909 SNP_multiallelic 14304 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 470209 INDEL_multiallelic 3960 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 30867101 SNP_biallelic 607367 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4236234 INDEL_biallelic 54342 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 25217990 SNP_biallelic 494369 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3763908 INDEL_biallelic 47734 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 917042 SNP_multiallelic 14301 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 454419 INDEL_multiallelic 3955 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5094893 INDEL_biallelic 68304 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 26483481 SNP_biallelic 535682 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3753841 INDEL_biallelic 48799 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 908738 SNP_multiallelic 14301 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 448068 INDEL_multiallelic 3955 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 976921 SNP_multiallelic 14308 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 47305964 SNP_biallelic 934664 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5718378 INDEL_biallelic 76750 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1040612 SNP_multiallelic 14321 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 499171 INDEL_multiallelic 3962 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 481387 INDEL_multiallelic 3964 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 43448832 SNP_biallelic 896132 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5354732 INDEL_biallelic 75961 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 994393 SNP_multiallelic 14322 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 469870 INDEL_multiallelic 3958 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 24627618 SNP_biallelic 555099 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3561145 INDEL_biallelic 54095 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 834742 SNP_multiallelic 14297 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 398495 INDEL_multiallelic 3956 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 27337078 SNP_biallelic 580634 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3858932 INDEL_biallelic 54717 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 875981 SNP_multiallelic 14295 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 427323 INDEL_multiallelic 3959 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 30212370 SNP_biallelic 605891 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4181402 INDEL_biallelic 55159 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 930474 SNP_multiallelic 14298 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 457958 INDEL_multiallelic 3959 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 38612464 SNP_biallelic 762399 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 30911320 SNP_biallelic 608613 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4244941 INDEL_biallelic 54425 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 945796 SNP_multiallelic 14301 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 469033 INDEL_multiallelic 3960 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 30608685 SNP_biallelic 590205 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4214984 INDEL_biallelic 53143 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 945797 SNP_multiallelic 14300 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 470024 INDEL_multiallelic 3960 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 47008865 SNP_biallelic 890670 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5911327 INDEL_biallelic 77163 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1070110 SNP_multiallelic 14317 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 517802 INDEL_multiallelic 3967 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_SNP_biallelic.no_monomorphic.vcf.gz 97834762 SNP_biallelic 970470 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 11148149 INDEL_biallelic 66856 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_SNP_biallelic.no_monomorphic.vcf.gz 87239365 SNP_biallelic 1121342 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 9984400 INDEL_biallelic 81996 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_SNP_biallelic.no_monomorphic.vcf.gz 92046049 SNP_biallelic 966063 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 10206686 INDEL_biallelic 59807 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_SNP_biallelic.no_monomorphic.vcf.gz 197068241 SNP_biallelic 1705489 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 19072146 INDEL_biallelic 99102 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_SNP_biallelic.no_monomorphic.vcf.gz 103851068 SNP_biallelic 1083521 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 11265671 INDEL_biallelic 67879 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1800847 SNP_multiallelic 14318 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1039424 INDEL_multiallelic 3971 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1543435 SNP_multiallelic 14325 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 853700 INDEL_multiallelic 3971 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1729053 SNP_multiallelic 14315 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1006769 INDEL_multiallelic 3969 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2705589 SNP_multiallelic 14349 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1489095 INDEL_multiallelic 3982 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1821540 SNP_multiallelic 14322 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1050544 INDEL_multiallelic 3971 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 542448 INDEL_multiallelic 4642 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 547204 INDEL_multiallelic 4647 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 53875631 SNP_biallelic 1086017 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6841522 INDEL_biallelic 94107 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1701830 SNP_multiallelic 32075 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 590150 INDEL_multiallelic 4664 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4458051 INDEL_biallelic 57387 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4490046 INDEL_biallelic 57801 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 42328714 SNP_biallelic 971093 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5613703 INDEL_biallelic 88213 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1502485 SNP_multiallelic 32070 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 504585 INDEL_multiallelic 4665 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1552889 SNP_multiallelic 32041 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 543641 INDEL_multiallelic 4642 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 33474830 SNP_biallelic 703649 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4744184 INDEL_biallelic 64985 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1532177 SNP_multiallelic 32047 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 529052 INDEL_multiallelic 4651 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5537192 INDEL_biallelic 76101 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 27502146 SNP_biallelic 568086 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4201300 INDEL_biallelic 55785 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1518457 SNP_multiallelic 32037 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 521495 INDEL_multiallelic 4641 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 30344663 SNP_biallelic 614673 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 32208809 SNP_biallelic 639756 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4758537 INDEL_biallelic 61795 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1557358 SNP_multiallelic 32045 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1553148 SNP_multiallelic 32040 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 29333763 SNP_biallelic 590065 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1588351 SNP_multiallelic 32047 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 39490983 SNP_biallelic 810985 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1583376 SNP_multiallelic 32062 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 553924 INDEL_multiallelic 4658 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 56055186 SNP_biallelic 1064280 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 635777 INDEL_multiallelic 4661 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 50145320 SNP_biallelic 986689 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6612896 INDEL_biallelic 88536 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1706873 SNP_multiallelic 32064 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 596574 INDEL_multiallelic 4659 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7124952 INDEL_biallelic 90624 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 566996 INDEL_multiallelic 4646 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5072112 INDEL_biallelic 65389 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 29367386 SNP_biallelic 570151 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4617525 INDEL_biallelic 59704 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1549628 SNP_multiallelic 32038 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 543736 INDEL_multiallelic 4640 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1777227 SNP_multiallelic 32074 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 29993847 SNP_biallelic 604142 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4547517 INDEL_biallelic 60493 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1534304 SNP_multiallelic 32044 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 529479 INDEL_multiallelic 4642 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1594761 SNP_multiallelic 32045 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 36062517 SNP_biallelic 706114 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 34159983 SNP_biallelic 669599 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5003993 INDEL_biallelic 64226 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1587544 SNP_multiallelic 32038 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 561495 INDEL_multiallelic 4647 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5186521 INDEL_biallelic 66598 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1420600 SNP_multiallelic 32054 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 35441646 SNP_biallelic 707706 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 562200 INDEL_multiallelic 4649 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 481616 INDEL_multiallelic 4654 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 29929274 SNP_biallelic 642542 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 28510214 SNP_biallelic 568463 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4443727 INDEL_biallelic 56694 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1550328 SNP_multiallelic 32038 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 544027 INDEL_multiallelic 4643 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 30132400 SNP_biallelic 619306 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4464615 INDEL_biallelic 58350 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1539995 SNP_multiallelic 32041 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 536920 INDEL_multiallelic 4645 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4451973 INDEL_biallelic 62947 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 53668540 SNP_biallelic 1071634 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6727720 INDEL_biallelic 90177 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1713584 SNP_multiallelic 32077 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 597497 INDEL_multiallelic 4666 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1471135 SNP_multiallelic 32046 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 48732307 SNP_biallelic 1014006 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6270276 INDEL_biallelic 88834 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1637876 SNP_multiallelic 32071 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 561080 INDEL_multiallelic 4662 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 510407 INDEL_multiallelic 4648 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 29803870 SNP_biallelic 683736 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4413856 INDEL_biallelic 67535 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1568872 SNP_multiallelic 32049 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 34417880 SNP_biallelic 699607 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4960993 INDEL_biallelic 65571 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 549920 INDEL_multiallelic 4650 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 45110073 SNP_biallelic 899155 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6146746 INDEL_biallelic 82484 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1642218 SNP_multiallelic 32071 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 582288 INDEL_multiallelic 4664 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 35465309 SNP_biallelic 708589 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5066370 INDEL_biallelic 65285 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1588965 SNP_multiallelic 32049 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 561261 INDEL_multiallelic 4646 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 34976619 SNP_biallelic 682785 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5036224 INDEL_biallelic 63736 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1593360 SNP_multiallelic 32050 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 565845 INDEL_multiallelic 4645 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 53194901 SNP_biallelic 1018325 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6948849 INDEL_biallelic 90700 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1749161 SNP_multiallelic 32068 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 618439 INDEL_multiallelic 4663 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_SNP_biallelic.no_monomorphic.vcf.gz 112659230 SNP_biallelic 1112287 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13297106 INDEL_biallelic 79178 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_SNP_biallelic.no_monomorphic.vcf.gz 100985517 SNP_biallelic 1297655 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11922258 INDEL_biallelic 97061 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_SNP_biallelic.no_monomorphic.vcf.gz 104723897 SNP_biallelic 1094790 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 12071426 INDEL_biallelic 70756 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_SNP_biallelic.no_monomorphic.vcf.gz 224373906 SNP_biallelic 1930507 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22431010 INDEL_biallelic 115850 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_SNP_biallelic.no_monomorphic.vcf.gz 118882702 SNP_biallelic 1234453 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13403313 INDEL_biallelic 80217 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2803728 SNP_multiallelic 32063 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1257351 INDEL_multiallelic 4657 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2450183 SNP_multiallelic 32092 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1035963 INDEL_multiallelic 4669 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2710435 SNP_multiallelic 32056 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1204159 INDEL_multiallelic 4657 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4006773 SNP_multiallelic 32110 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1779927 INDEL_multiallelic 4673 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2828047 SNP_multiallelic 32062 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1265459 INDEL_multiallelic 4664 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 522291 INDEL_multiallelic 4455 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 528183 INDEL_multiallelic 4459 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 53458996 SNP_biallelic 1077320 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6717777 INDEL_biallelic 93326 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1158466 SNP_multiallelic 16087 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 570999 INDEL_multiallelic 4477 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4261386 INDEL_biallelic 55376 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4275701 INDEL_biallelic 55419 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 42243587 SNP_biallelic 972336 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5522888 INDEL_biallelic 87734 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1013244 SNP_multiallelic 16081 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 486166 INDEL_multiallelic 4472 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1022781 SNP_multiallelic 16043 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 521490 INDEL_multiallelic 4451 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 32522864 SNP_biallelic 687630 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4522484 INDEL_biallelic 62665 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1010852 SNP_multiallelic 16052 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 506415 INDEL_multiallelic 4457 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5443880 INDEL_biallelic 75969 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 26781784 SNP_biallelic 554454 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4004594 INDEL_biallelic 53639 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 995385 SNP_multiallelic 16044 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 500700 INDEL_multiallelic 4443 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 29404233 SNP_biallelic 596321 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 31496922 SNP_biallelic 625891 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4574524 INDEL_biallelic 59960 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1034589 SNP_multiallelic 16056 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1022101 SNP_multiallelic 16046 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 28625964 SNP_biallelic 577939 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1055435 SNP_multiallelic 16051 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 39533311 SNP_biallelic 814616 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1057969 SNP_multiallelic 16071 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 532904 INDEL_multiallelic 4470 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 55344198 SNP_biallelic 1050054 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 612614 INDEL_multiallelic 4472 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 50374300 SNP_biallelic 993397 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6522045 INDEL_biallelic 88312 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1165399 SNP_multiallelic 16085 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 577564 INDEL_multiallelic 4472 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6968763 INDEL_biallelic 89472 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 546929 INDEL_multiallelic 4464 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4832438 INDEL_biallelic 63094 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 28745284 SNP_biallelic 558715 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4443896 INDEL_biallelic 58018 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1028608 SNP_multiallelic 16056 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 524634 INDEL_multiallelic 4453 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1220158 SNP_multiallelic 16090 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 29394909 SNP_biallelic 592226 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4382799 INDEL_biallelic 58855 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1014154 SNP_multiallelic 16052 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 511900 INDEL_multiallelic 4455 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1067681 SNP_multiallelic 16066 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 35205827 SNP_biallelic 689941 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 33190236 SNP_biallelic 653517 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4765736 INDEL_biallelic 61864 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1054184 SNP_multiallelic 16053 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 538453 INDEL_multiallelic 4455 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4985984 INDEL_biallelic 64653 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 935248 SNP_multiallelic 16059 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 34501506 SNP_biallelic 693583 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 539360 INDEL_multiallelic 4459 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 460484 INDEL_multiallelic 4463 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 30446344 SNP_biallelic 658702 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 27804958 SNP_biallelic 554495 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4256987 INDEL_biallelic 54846 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1022101 SNP_multiallelic 16046 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 523595 INDEL_multiallelic 4453 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 29755651 SNP_biallelic 614583 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4287354 INDEL_biallelic 56667 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1014708 SNP_multiallelic 16051 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 516068 INDEL_multiallelic 4450 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4405127 INDEL_biallelic 63345 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 53139225 SNP_biallelic 1062307 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6572706 INDEL_biallelic 89094 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1164289 SNP_multiallelic 16082 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 575483 INDEL_multiallelic 4474 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 978743 SNP_multiallelic 16053 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 48541209 SNP_biallelic 1011561 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6172705 INDEL_biallelic 88455 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1115371 SNP_multiallelic 16084 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 542431 INDEL_multiallelic 4474 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 489852 INDEL_multiallelic 4457 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 27823769 SNP_biallelic 638802 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4128378 INDEL_biallelic 63574 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1039144 SNP_multiallelic 16059 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 33642516 SNP_biallelic 687252 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4746498 INDEL_biallelic 63492 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 527582 INDEL_multiallelic 4456 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 43496383 SNP_biallelic 870259 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5869072 INDEL_biallelic 79703 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1098834 SNP_multiallelic 16080 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 557551 INDEL_multiallelic 4469 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 34619291 SNP_biallelic 696207 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4839361 INDEL_biallelic 63103 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1054857 SNP_multiallelic 16055 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 538528 INDEL_multiallelic 4454 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 34505455 SNP_biallelic 675945 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4857524 INDEL_biallelic 62201 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1061531 SNP_multiallelic 16059 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 544745 INDEL_multiallelic 4457 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 52965152 SNP_biallelic 1014340 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6833670 INDEL_biallelic 90170 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1202029 SNP_multiallelic 16090 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 597861 INDEL_multiallelic 4470 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_SNP_biallelic.no_monomorphic.vcf.gz 111379936 SNP_biallelic 1105503 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12815018 INDEL_biallelic 77225 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_SNP_biallelic.no_monomorphic.vcf.gz 99510711 SNP_biallelic 1289573 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11517467 INDEL_biallelic 95609 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_SNP_biallelic.no_monomorphic.vcf.gz 103612024 SNP_biallelic 1098682 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11585522 INDEL_biallelic 68868 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_SNP_biallelic.no_monomorphic.vcf.gz 224021392 SNP_biallelic 1934171 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22043859 INDEL_biallelic 115068 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_SNP_biallelic.no_monomorphic.vcf.gz 116897167 SNP_biallelic 1231562 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12759455 INDEL_biallelic 77627 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2016420 SNP_multiallelic 16083 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1216146 INDEL_multiallelic 4474 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1731544 SNP_multiallelic 16108 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 991482 INDEL_multiallelic 4477 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1916065 SNP_multiallelic 16069 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1157555 INDEL_multiallelic 4468 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3028731 SNP_multiallelic 16121 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1728963 INDEL_multiallelic 4489 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2020673 SNP_multiallelic 16076 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1211145 INDEL_multiallelic 4469 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 549107 INDEL_multiallelic 4654 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 548946 INDEL_multiallelic 4657 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 49875319 SNP_biallelic 1005649 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6764814 INDEL_biallelic 93295 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1041388 SNP_multiallelic 14456 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 591390 INDEL_multiallelic 4664 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4365095 INDEL_biallelic 56169 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4408966 INDEL_biallelic 56768 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 39373190 SNP_biallelic 904463 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5563098 INDEL_biallelic 87798 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 913700 SNP_multiallelic 14455 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 504610 INDEL_multiallelic 4662 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 928388 SNP_multiallelic 14432 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 548646 INDEL_multiallelic 4654 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 30930690 SNP_biallelic 649483 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4660392 INDEL_biallelic 63938 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 917702 SNP_multiallelic 14439 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 531375 INDEL_multiallelic 4658 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5405740 INDEL_biallelic 74459 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 25544426 SNP_biallelic 525554 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4149254 INDEL_biallelic 55101 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 904607 SNP_multiallelic 14432 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 527433 INDEL_multiallelic 4652 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 28048472 SNP_biallelic 566331 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 29699825 SNP_biallelic 590415 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4666927 INDEL_biallelic 60711 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 935676 SNP_multiallelic 14437 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 928414 SNP_multiallelic 14436 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 27174290 SNP_biallelic 545633 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 957478 SNP_multiallelic 14444 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 36136669 SNP_biallelic 742092 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 951419 SNP_multiallelic 14447 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 553348 INDEL_multiallelic 4665 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 51791627 SNP_biallelic 985474 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 635315 INDEL_multiallelic 4661 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 46619267 SNP_biallelic 918419 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6549524 INDEL_biallelic 88043 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1045987 SNP_multiallelic 14453 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 598480 INDEL_multiallelic 4662 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7020979 INDEL_biallelic 89532 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 569050 INDEL_multiallelic 4656 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4951502 INDEL_biallelic 63865 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 27038304 SNP_biallelic 524226 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4523104 INDEL_biallelic 58513 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 931263 SNP_multiallelic 14439 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 546512 INDEL_multiallelic 4655 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1094231 SNP_multiallelic 14457 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 27486092 SNP_biallelic 554074 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4431717 INDEL_biallelic 59038 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 916228 SNP_multiallelic 14441 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 531701 INDEL_multiallelic 4656 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 962736 SNP_multiallelic 14437 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 32787551 SNP_biallelic 640426 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 31398670 SNP_biallelic 614111 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4892107 INDEL_biallelic 62892 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 957204 SNP_multiallelic 14443 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 562887 INDEL_multiallelic 4657 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5033324 INDEL_biallelic 64513 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 850583 SNP_multiallelic 14440 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 32513813 SNP_biallelic 647497 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 565729 INDEL_multiallelic 4658 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 481294 INDEL_multiallelic 4661 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 28939173 SNP_biallelic 621853 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 26406935 SNP_biallelic 525191 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4373253 INDEL_biallelic 55975 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 928442 SNP_multiallelic 14435 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 549085 INDEL_multiallelic 4655 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 27993329 SNP_biallelic 573770 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4391655 INDEL_biallelic 57439 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 919667 SNP_multiallelic 14433 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 541380 INDEL_multiallelic 4655 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4496517 INDEL_biallelic 63996 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 49801460 SNP_biallelic 994251 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6649313 INDEL_biallelic 89352 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1047523 SNP_multiallelic 14449 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 599010 INDEL_multiallelic 4664 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 890110 SNP_multiallelic 14438 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 44988228 SNP_biallelic 937535 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6190841 INDEL_biallelic 88063 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1001749 SNP_multiallelic 14452 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 562398 INDEL_multiallelic 4663 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 513648 INDEL_multiallelic 4659 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 27046992 SNP_biallelic 620487 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4285359 INDEL_biallelic 65776 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 943897 SNP_multiallelic 14448 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 31973466 SNP_biallelic 649740 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4888562 INDEL_biallelic 64849 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 551911 INDEL_multiallelic 4659 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 41208717 SNP_biallelic 822502 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5985169 INDEL_biallelic 80582 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 992747 SNP_multiallelic 14450 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 580893 INDEL_multiallelic 4663 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 32593940 SNP_biallelic 649811 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4949931 INDEL_biallelic 63766 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 957325 SNP_multiallelic 14444 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 566148 INDEL_multiallelic 4657 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 32371974 SNP_biallelic 631391 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4937508 INDEL_biallelic 62486 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 961896 SNP_multiallelic 14440 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 568124 INDEL_multiallelic 4657 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 49265164 SNP_biallelic 944002 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6864359 INDEL_biallelic 89926 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1076742 SNP_multiallelic 14455 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 619700 INDEL_multiallelic 4661 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_SNP_biallelic.no_monomorphic.vcf.gz 104188778 SNP_biallelic 1033577 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13010094 INDEL_biallelic 77529 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_SNP_biallelic.no_monomorphic.vcf.gz 93667912 SNP_biallelic 1207470 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11686833 INDEL_biallelic 95708 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_SNP_biallelic.no_monomorphic.vcf.gz 97598461 SNP_biallelic 1023187 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11878327 INDEL_biallelic 69811 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_SNP_biallelic.no_monomorphic.vcf.gz 208535478 SNP_biallelic 1802923 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22194272 INDEL_biallelic 114987 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_SNP_biallelic.no_monomorphic.vcf.gz 110438888 SNP_biallelic 1153778 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13146217 INDEL_biallelic 79009 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1816913 SNP_multiallelic 14451 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1264396 INDEL_multiallelic 4660 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1560398 SNP_multiallelic 14464 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1034613 INDEL_multiallelic 4667 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1735269 SNP_multiallelic 14453 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1223009 INDEL_multiallelic 4662 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2700072 SNP_multiallelic 14488 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1787286 INDEL_multiallelic 4669 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1831379 SNP_multiallelic 14469 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1274187 INDEL_multiallelic 4661 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 426248 INDEL_multiallelic 3610 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 429034 INDEL_multiallelic 3613 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 38331512 SNP_biallelic 774283 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5316069 INDEL_biallelic 74041 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 798860 SNP_multiallelic 10765 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 461578 INDEL_multiallelic 3621 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3396390 INDEL_biallelic 44361 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3424370 INDEL_biallelic 44772 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 30149872 SNP_biallelic 694674 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4371187 INDEL_biallelic 69531 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 698578 SNP_multiallelic 10759 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 392539 INDEL_multiallelic 3620 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 706485 SNP_multiallelic 10749 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 426213 INDEL_multiallelic 3607 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 23918189 SNP_biallelic 504744 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3652184 INDEL_biallelic 50763 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 697621 SNP_multiallelic 10750 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 413791 INDEL_multiallelic 3610 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4242272 INDEL_biallelic 58904 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 19642833 SNP_biallelic 407521 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3211704 INDEL_biallelic 43227 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 689089 SNP_multiallelic 10751 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 409832 INDEL_multiallelic 3609 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 21584351 SNP_biallelic 439509 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 23193062 SNP_biallelic 461766 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3657136 INDEL_biallelic 47962 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 714778 SNP_multiallelic 10751 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 706812 SNP_multiallelic 10748 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 20954317 SNP_biallelic 424238 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 727824 SNP_multiallelic 10747 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 27798635 SNP_biallelic 570513 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 727148 SNP_multiallelic 10756 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 430791 INDEL_multiallelic 3615 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 40134297 SNP_biallelic 763814 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 495305 INDEL_multiallelic 3618 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 35980848 SNP_biallelic 710145 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5167836 INDEL_biallelic 70187 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 805379 SNP_multiallelic 10761 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 466289 INDEL_multiallelic 3620 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 5563395 INDEL_biallelic 71738 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 444010 INDEL_multiallelic 3616 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3872432 INDEL_biallelic 50620 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 21129906 SNP_biallelic 411082 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3558202 INDEL_biallelic 46495 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 712212 SNP_multiallelic 10747 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 426589 INDEL_multiallelic 3610 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 842693 SNP_multiallelic 10757 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 21442054 SNP_biallelic 433006 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3484884 INDEL_biallelic 46818 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 700702 SNP_multiallelic 10752 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 415564 INDEL_multiallelic 3613 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 736168 SNP_multiallelic 10752 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 25809656 SNP_biallelic 505880 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 24374464 SNP_biallelic 479263 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3840143 INDEL_biallelic 50001 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 729735 SNP_multiallelic 10748 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 440540 INDEL_multiallelic 3615 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4000203 INDEL_biallelic 51975 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 648479 SNP_multiallelic 10751 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 25180833 SNP_biallelic 504748 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 440913 INDEL_multiallelic 3612 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 374538 INDEL_multiallelic 3617 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 22112910 SNP_biallelic 475206 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 20354438 SNP_biallelic 407698 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3389154 INDEL_biallelic 43952 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 705504 SNP_multiallelic 10752 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 427177 INDEL_multiallelic 3609 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 21446858 SNP_biallelic 442767 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3405233 INDEL_biallelic 45146 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 700650 SNP_multiallelic 10748 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 421476 INDEL_multiallelic 3612 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3512751 INDEL_biallelic 50333 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 38152316 SNP_biallelic 762340 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5238019 INDEL_biallelic 71118 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 804527 SNP_multiallelic 10757 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 467013 INDEL_multiallelic 3618 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 679639 SNP_multiallelic 10753 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 34890346 SNP_biallelic 728779 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4899893 INDEL_biallelic 70416 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 770380 SNP_multiallelic 10756 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 438600 INDEL_multiallelic 3621 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 400730 INDEL_multiallelic 3614 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 20494327 SNP_biallelic 470474 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3318188 INDEL_biallelic 51112 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 718256 SNP_multiallelic 10751 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 24829554 SNP_biallelic 506606 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3833120 INDEL_biallelic 51387 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 431737 INDEL_multiallelic 3616 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 31801116 SNP_biallelic 633911 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4720770 INDEL_biallelic 64087 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 760196 SNP_multiallelic 10762 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 454161 INDEL_multiallelic 3621 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 25385733 SNP_biallelic 509782 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3895526 INDEL_biallelic 50914 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 729496 SNP_multiallelic 10753 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 441286 INDEL_multiallelic 3613 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 24981344 SNP_biallelic 487786 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3856061 INDEL_biallelic 49315 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 733957 SNP_multiallelic 10754 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 443479 INDEL_multiallelic 3613 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 38061596 SNP_biallelic 730309 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5416035 INDEL_biallelic 71633 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 829808 SNP_multiallelic 10759 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 483748 INDEL_multiallelic 3619 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_SNP_biallelic.no_monomorphic.vcf.gz 80999637 SNP_biallelic 795320 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 10225836 INDEL_biallelic 61780 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_SNP_biallelic.no_monomorphic.vcf.gz 71847493 SNP_biallelic 919364 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 9174209 INDEL_biallelic 76148 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_SNP_biallelic.no_monomorphic.vcf.gz 74869527 SNP_biallelic 783104 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 9217587 INDEL_biallelic 55197 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_SNP_biallelic.no_monomorphic.vcf.gz 160665832 SNP_biallelic 1370978 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 17513031 INDEL_biallelic 91402 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_SNP_biallelic.no_monomorphic.vcf.gz 85204173 SNP_biallelic 885483 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 10287639 INDEL_biallelic 62883 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1399919 SNP_multiallelic 10762 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 987565 INDEL_multiallelic 3618 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1200241 SNP_multiallelic 10766 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 808545 INDEL_multiallelic 3621 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1327216 SNP_multiallelic 10757 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 950219 INDEL_multiallelic 3613 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2103221 SNP_multiallelic 10774 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1396838 INDEL_multiallelic 3624 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1400402 SNP_multiallelic 10758 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 997288 INDEL_multiallelic 3618 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 359648 INDEL_multiallelic 3063 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 360714 INDEL_multiallelic 3060 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 35295202 SNP_biallelic 706901 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4697418 INDEL_biallelic 64844 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 762976 SNP_multiallelic 10460 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 390175 INDEL_multiallelic 3067 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3015550 INDEL_biallelic 38997 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3052088 INDEL_biallelic 39550 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 27699467 SNP_biallelic 631427 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3843685 INDEL_biallelic 60641 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 667809 SNP_multiallelic 10457 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 333377 INDEL_multiallelic 3069 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 679990 SNP_multiallelic 10443 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 359966 INDEL_multiallelic 3061 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 21735310 SNP_biallelic 453660 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3203017 INDEL_biallelic 44019 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 671779 SNP_multiallelic 10446 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 348788 INDEL_multiallelic 3064 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3798038 INDEL_biallelic 52643 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 18006185 SNP_biallelic 368720 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2856207 INDEL_biallelic 38060 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 661585 SNP_multiallelic 10446 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 346191 INDEL_multiallelic 3061 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 19839593 SNP_biallelic 399657 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 20848392 SNP_biallelic 411726 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3201993 INDEL_biallelic 41735 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 683505 SNP_multiallelic 10449 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 678626 SNP_multiallelic 10444 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 19105459 SNP_biallelic 382266 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 697837 SNP_multiallelic 10448 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 26046488 SNP_biallelic 533307 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 696928 SNP_multiallelic 10449 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 365005 INDEL_multiallelic 3070 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 36671194 SNP_biallelic 692516 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 419327 INDEL_multiallelic 3072 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 32916051 SNP_biallelic 643251 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4526527 INDEL_biallelic 60706 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 766510 SNP_multiallelic 10458 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 394916 INDEL_multiallelic 3068 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4882274 INDEL_biallelic 62383 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 372572 INDEL_multiallelic 3062 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3409637 INDEL_biallelic 44144 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 19040042 SNP_biallelic 366818 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3121845 INDEL_biallelic 40530 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 680327 SNP_multiallelic 10445 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 358324 INDEL_multiallelic 3064 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 802095 SNP_multiallelic 10462 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 19552069 SNP_biallelic 391548 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3078441 INDEL_biallelic 41181 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 669450 SNP_multiallelic 10444 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 349214 INDEL_multiallelic 3063 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 703260 SNP_multiallelic 10448 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 23033568 SNP_biallelic 446524 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 22077762 SNP_biallelic 428571 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3373976 INDEL_biallelic 43417 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 699392 SNP_multiallelic 10445 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 370338 INDEL_multiallelic 3062 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3462672 INDEL_biallelic 44455 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 620854 SNP_multiallelic 10450 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 22823855 SNP_biallelic 452141 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 370077 INDEL_multiallelic 3064 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 315496 INDEL_multiallelic 3065 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 20427884 SNP_biallelic 438863 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 18639153 SNP_biallelic 368953 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3017770 INDEL_biallelic 38743 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 679503 SNP_multiallelic 10443 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 360674 INDEL_multiallelic 3063 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 19586261 SNP_biallelic 400212 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3008075 INDEL_biallelic 39523 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 672162 SNP_multiallelic 10447 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 355281 INDEL_multiallelic 3061 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3109646 INDEL_biallelic 44666 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 35568576 SNP_biallelic 707426 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4637561 INDEL_biallelic 62508 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 768346 SNP_multiallelic 10462 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 395419 INDEL_multiallelic 3067 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 648485 SNP_multiallelic 10445 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 32017540 SNP_biallelic 662216 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4308312 INDEL_biallelic 61274 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 734231 SNP_multiallelic 10458 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 371338 INDEL_multiallelic 3068 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 336476 INDEL_multiallelic 3068 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 18702903 SNP_biallelic 426241 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2916960 INDEL_biallelic 44798 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 688093 SNP_multiallelic 10447 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 22471749 SNP_biallelic 453998 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3366596 INDEL_biallelic 44780 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 362709 INDEL_multiallelic 3065 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 28632842 SNP_biallelic 569733 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4106370 INDEL_biallelic 55490 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 723341 SNP_multiallelic 10456 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 380121 INDEL_multiallelic 3069 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 22948481 SNP_biallelic 454975 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3418491 INDEL_biallelic 44170 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 698892 SNP_multiallelic 10446 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 370680 INDEL_multiallelic 3064 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 22959340 SNP_biallelic 445665 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3418759 INDEL_biallelic 43488 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 702099 SNP_multiallelic 10448 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 373836 INDEL_multiallelic 3065 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 34737049 SNP_biallelic 660543 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4747875 INDEL_biallelic 62121 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 789440 SNP_multiallelic 10460 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 408750 INDEL_multiallelic 3070 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_SNP_biallelic.no_monomorphic.vcf.gz 72885523 SNP_biallelic 721457 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8940834 INDEL_biallelic 53260 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_SNP_biallelic.no_monomorphic.vcf.gz 65523459 SNP_biallelic 846441 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 8065518 INDEL_biallelic 66436 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_SNP_biallelic.no_monomorphic.vcf.gz 68777289 SNP_biallelic 719544 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 8231020 INDEL_biallelic 48414 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_SNP_biallelic.no_monomorphic.vcf.gz 146972374 SNP_biallelic 1270457 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 15410242 INDEL_biallelic 79903 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_SNP_biallelic.no_monomorphic.vcf.gz 77553337 SNP_biallelic 810251 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 9085148 INDEL_biallelic 54882 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1324430 SNP_multiallelic 10461 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 822872 INDEL_multiallelic 3071 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1138657 SNP_multiallelic 10463 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 673665 INDEL_multiallelic 3073 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1272793 SNP_multiallelic 10458 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 795779 INDEL_multiallelic 3066 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1975978 SNP_multiallelic 10479 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1171844 INDEL_multiallelic 3078 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1337096 SNP_multiallelic 10463 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 829789 INDEL_multiallelic 3074 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 319502 INDEL_multiallelic 2761 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 318829 INDEL_multiallelic 2750 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 32793917 SNP_biallelic 648648 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4312370 INDEL_biallelic 58607 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 683898 SNP_multiallelic 9371 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 350184 INDEL_multiallelic 2772 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2784835 INDEL_biallelic 35399 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2799134 INDEL_biallelic 35526 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 25807512 SNP_biallelic 580199 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3539848 INDEL_biallelic 55150 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 599098 SNP_multiallelic 9369 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 298779 INDEL_multiallelic 2772 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 605254 SNP_multiallelic 9360 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 319933 INDEL_multiallelic 2759 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 19905987 SNP_biallelic 409450 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2931472 INDEL_biallelic 39715 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 596360 SNP_multiallelic 9358 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 310106 INDEL_multiallelic 2760 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3382742 INDEL_biallelic 45976 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 16703182 SNP_biallelic 335628 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2631061 INDEL_biallelic 34457 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 588461 SNP_multiallelic 9359 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 307374 INDEL_multiallelic 2756 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 18340313 SNP_biallelic 362239 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18829060 SNP_biallelic 365446 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2912657 INDEL_biallelic 37383 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 605446 SNP_multiallelic 9353 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 604117 SNP_multiallelic 9362 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 17786262 SNP_biallelic 349176 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 621897 SNP_multiallelic 9359 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 23007277 SNP_biallelic 462295 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 618120 SNP_multiallelic 9366 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 324015 INDEL_multiallelic 2766 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 34061970 SNP_biallelic 634259 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 375817 INDEL_multiallelic 2773 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 30476347 SNP_biallelic 586667 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4172851 INDEL_biallelic 55139 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 687255 SNP_multiallelic 9368 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 353846 INDEL_multiallelic 2769 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4490397 INDEL_biallelic 56460 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 331726 INDEL_multiallelic 2760 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3108772 INDEL_biallelic 39608 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 17313570 SNP_biallelic 326945 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2841180 INDEL_biallelic 36254 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 603964 SNP_multiallelic 9350 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 317863 INDEL_multiallelic 2752 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 720090 SNP_multiallelic 9372 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 17613028 SNP_biallelic 345842 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2796946 INDEL_biallelic 36780 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 594768 SNP_multiallelic 9353 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 310708 INDEL_multiallelic 2756 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 623652 SNP_multiallelic 9360 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 21142545 SNP_biallelic 405542 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 20011718 SNP_biallelic 382229 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3059330 INDEL_biallelic 38708 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 621485 SNP_multiallelic 9359 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 328843 INDEL_multiallelic 2760 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3173799 INDEL_biallelic 40285 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 552010 SNP_multiallelic 9358 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 20923688 SNP_biallelic 409016 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 329501 INDEL_multiallelic 2759 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 281863 INDEL_multiallelic 2759 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 18331167 SNP_biallelic 384252 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 17361426 SNP_biallelic 337235 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2781404 INDEL_biallelic 34992 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 605455 SNP_multiallelic 9361 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 321591 INDEL_multiallelic 2765 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 18202400 SNP_biallelic 364925 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2781612 INDEL_biallelic 35812 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 599489 SNP_multiallelic 9359 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 315131 INDEL_multiallelic 2759 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2806863 INDEL_biallelic 39296 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 32898496 SNP_biallelic 644609 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4261833 INDEL_biallelic 56561 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 688803 SNP_multiallelic 9371 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 354276 INDEL_multiallelic 2774 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 578132 SNP_multiallelic 9354 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 29820465 SNP_biallelic 609082 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3976738 INDEL_biallelic 55884 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 659155 SNP_multiallelic 9369 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 333223 INDEL_multiallelic 2772 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 300469 INDEL_multiallelic 2760 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 16864941 SNP_biallelic 375347 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2625509 INDEL_biallelic 39439 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 612136 SNP_multiallelic 9360 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 20424146 SNP_biallelic 406201 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3053620 INDEL_biallelic 39911 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 322393 INDEL_multiallelic 2761 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 26035030 SNP_biallelic 509724 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3729702 INDEL_biallelic 49578 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 643738 SNP_multiallelic 9367 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 339773 INDEL_multiallelic 2770 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 20827125 SNP_biallelic 406172 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3109176 INDEL_biallelic 39508 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 622795 SNP_multiallelic 9361 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 329928 INDEL_multiallelic 2762 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 20599615 SNP_biallelic 393911 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3083811 INDEL_biallelic 38553 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 622006 SNP_multiallelic 9356 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 331632 INDEL_multiallelic 2761 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 32264045 SNP_biallelic 605582 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4378887 INDEL_biallelic 56563 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 707954 SNP_multiallelic 9369 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 365468 INDEL_multiallelic 2771 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_SNP_biallelic.no_monomorphic.vcf.gz 65424901 SNP_biallelic 653981 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8096178 INDEL_biallelic 48212 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_SNP_biallelic.no_monomorphic.vcf.gz 58618801 SNP_biallelic 753247 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7276902 INDEL_biallelic 59145 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_SNP_biallelic.no_monomorphic.vcf.gz 62635007 SNP_biallelic 660634 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7494638 INDEL_biallelic 43652 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_SNP_biallelic.no_monomorphic.vcf.gz 134768632 SNP_biallelic 1162842 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 14098398 INDEL_biallelic 72288 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_SNP_biallelic.no_monomorphic.vcf.gz 69811342 SNP_biallelic 734381 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 8220755 INDEL_biallelic 49336 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1169993 SNP_multiallelic 9373 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 725014 INDEL_multiallelic 2772 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1010278 SNP_multiallelic 9379 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 599627 INDEL_multiallelic 2776 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1131583 SNP_multiallelic 9378 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 701785 INDEL_multiallelic 2773 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1782927 SNP_multiallelic 9389 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1051682 INDEL_multiallelic 2790 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1185051 SNP_multiallelic 9377 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 733478 INDEL_multiallelic 2775 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 313437 INDEL_multiallelic 2718 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 316590 INDEL_multiallelic 2721 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 35540035 SNP_biallelic 705189 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4088263 INDEL_biallelic 55138 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 878185 SNP_multiallelic 12414 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 345214 INDEL_multiallelic 2733 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2649739 INDEL_biallelic 33134 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2661993 INDEL_biallelic 33268 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 27802649 SNP_biallelic 624622 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3336599 INDEL_biallelic 51389 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 768925 SNP_multiallelic 12409 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 294744 INDEL_multiallelic 2729 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 774107 SNP_multiallelic 12389 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 314529 INDEL_multiallelic 2721 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 21456607 SNP_biallelic 440956 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2788404 INDEL_biallelic 37248 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 764504 SNP_multiallelic 12389 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 305117 INDEL_multiallelic 2725 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3298052 INDEL_biallelic 44476 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 17996631 SNP_biallelic 360496 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2514866 INDEL_biallelic 32354 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 755740 SNP_multiallelic 12392 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 303330 INDEL_multiallelic 2720 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 19405622 SNP_biallelic 382391 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 20663945 SNP_biallelic 400333 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2832514 INDEL_biallelic 35862 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 778433 SNP_multiallelic 12390 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 774173 SNP_multiallelic 12392 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 18881238 SNP_biallelic 369430 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 795663 SNP_multiallelic 12390 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 25766674 SNP_biallelic 519807 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 795857 SNP_multiallelic 12401 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 318939 INDEL_multiallelic 2729 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 36861730 SNP_biallelic 689608 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 371070 INDEL_multiallelic 2730 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 33382013 SNP_biallelic 645400 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3981865 INDEL_biallelic 52240 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 885738 SNP_multiallelic 12408 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 349951 INDEL_multiallelic 2731 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4254332 INDEL_biallelic 52964 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 327458 INDEL_multiallelic 2722 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2982137 INDEL_biallelic 37450 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 18769466 SNP_biallelic 352534 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2756705 INDEL_biallelic 34716 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 776199 SNP_multiallelic 12395 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 314357 INDEL_multiallelic 2719 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 925071 SNP_multiallelic 12415 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 19360030 SNP_biallelic 379224 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2706750 INDEL_biallelic 35109 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 763228 SNP_multiallelic 12390 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 306840 INDEL_multiallelic 2720 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 802312 SNP_multiallelic 12396 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 23589889 SNP_biallelic 454042 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 22053080 SNP_biallelic 421487 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2971797 INDEL_biallelic 37175 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 798043 SNP_multiallelic 12390 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 324184 INDEL_multiallelic 2722 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3108084 INDEL_biallelic 39072 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 706691 SNP_multiallelic 12389 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 22715108 SNP_biallelic 443238 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 324104 INDEL_multiallelic 2721 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 276455 INDEL_multiallelic 2722 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 19377625 SNP_biallelic 406832 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 18553480 SNP_biallelic 359860 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2673745 INDEL_biallelic 33240 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 774086 SNP_multiallelic 12389 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 315084 INDEL_multiallelic 2719 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 19495659 SNP_biallelic 389662 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2658374 INDEL_biallelic 33690 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 767240 SNP_multiallelic 12390 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 311214 INDEL_multiallelic 2718 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2642385 INDEL_biallelic 36596 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 35560652 SNP_biallelic 697781 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4055558 INDEL_biallelic 53311 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 888260 SNP_multiallelic 12415 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 349380 INDEL_multiallelic 2730 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 737178 SNP_multiallelic 12392 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 32264979 SNP_biallelic 660068 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3754756 INDEL_biallelic 52164 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 848588 SNP_multiallelic 12409 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 329146 INDEL_multiallelic 2729 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 293578 INDEL_multiallelic 2720 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 18360601 SNP_biallelic 408354 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2521082 INDEL_biallelic 37536 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 784719 SNP_multiallelic 12387 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 22281244 SNP_biallelic 443210 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2940517 INDEL_biallelic 37972 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 317229 INDEL_multiallelic 2720 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 28918406 SNP_biallelic 568536 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3621406 INDEL_biallelic 47669 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 828689 SNP_multiallelic 12406 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 334813 INDEL_multiallelic 2730 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 22788055 SNP_biallelic 445410 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2989724 INDEL_biallelic 37545 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 796059 SNP_multiallelic 12391 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 324314 INDEL_multiallelic 2721 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 22797397 SNP_biallelic 436233 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3014380 INDEL_biallelic 37294 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 799592 SNP_multiallelic 12392 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 327538 INDEL_multiallelic 2721 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 35232461 SNP_biallelic 662599 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4171684 INDEL_biallelic 53320 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 912276 SNP_multiallelic 12410 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 362337 INDEL_multiallelic 2733 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_SNP_biallelic.no_monomorphic.vcf.gz 72299200 SNP_biallelic 731054 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7905515 INDEL_biallelic 46681 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_SNP_biallelic.no_monomorphic.vcf.gz 64722027 SNP_biallelic 845493 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7017672 INDEL_biallelic 56635 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_SNP_biallelic.no_monomorphic.vcf.gz 67323864 SNP_biallelic 723748 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7177299 INDEL_biallelic 41509 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_SNP_biallelic.no_monomorphic.vcf.gz 146733184 SNP_biallelic 1285679 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13360894 INDEL_biallelic 68028 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_SNP_biallelic.no_monomorphic.vcf.gz 76187821 SNP_biallelic 814194 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7892452 INDEL_biallelic 46875 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1503927 SNP_multiallelic 12411 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 714012 INDEL_multiallelic 2724 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1295076 SNP_multiallelic 12416 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 584874 INDEL_multiallelic 2732 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1443008 SNP_multiallelic 12406 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 685732 INDEL_multiallelic 2725 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2292599 SNP_multiallelic 12434 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1034010 INDEL_multiallelic 2735 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1514697 SNP_multiallelic 12406 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 714801 INDEL_multiallelic 2725 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 315972 INDEL_multiallelic 2778 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 318617 INDEL_multiallelic 2780 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 30872473 SNP_biallelic 615392 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4268495 INDEL_biallelic 57600 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 656754 SNP_multiallelic 9000 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 353666 INDEL_multiallelic 2804 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2721775 INDEL_biallelic 34466 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2721619 INDEL_biallelic 34354 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 24058341 SNP_biallelic 543290 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3486108 INDEL_biallelic 53886 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 573834 SNP_multiallelic 8997 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 301126 INDEL_multiallelic 2803 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 574648 SNP_multiallelic 8974 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 315591 INDEL_multiallelic 2778 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18281646 SNP_biallelic 379483 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2867514 INDEL_biallelic 38600 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 565854 SNP_multiallelic 8971 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 307970 INDEL_multiallelic 2783 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3418749 INDEL_biallelic 46336 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15120575 SNP_biallelic 306569 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2556617 INDEL_biallelic 33270 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 558466 SNP_multiallelic 8970 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 304845 INDEL_multiallelic 2780 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16529010 SNP_biallelic 330084 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 17631709 SNP_biallelic 345198 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2914990 INDEL_biallelic 37163 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 579423 SNP_multiallelic 8976 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 573124 SNP_multiallelic 8967 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16068804 SNP_biallelic 318819 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 590023 SNP_multiallelic 8975 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22066618 SNP_biallelic 448212 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 592847 SNP_multiallelic 8989 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 323835 INDEL_multiallelic 2792 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 31849639 SNP_biallelic 597637 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 379299 INDEL_multiallelic 2804 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 28612205 SNP_biallelic 554514 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4144787 INDEL_biallelic 54443 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 660657 SNP_multiallelic 8996 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 357664 INDEL_multiallelic 2801 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4442089 INDEL_biallelic 55412 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 331002 INDEL_multiallelic 2786 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3062089 INDEL_biallelic 38728 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16065931 SNP_biallelic 305710 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2838587 INDEL_biallelic 36001 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 577048 SNP_multiallelic 8973 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 317413 INDEL_multiallelic 2778 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 691302 SNP_multiallelic 9007 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16373473 SNP_biallelic 324182 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2781715 INDEL_biallelic 36369 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 568118 SNP_multiallelic 8972 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 309174 INDEL_multiallelic 2778 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 596268 SNP_multiallelic 8977 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 19926394 SNP_biallelic 386138 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 18654865 SNP_biallelic 360657 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3041759 INDEL_biallelic 38289 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 590665 SNP_multiallelic 8975 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 327282 INDEL_multiallelic 2782 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3191640 INDEL_biallelic 40331 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 526630 SNP_multiallelic 8974 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19146397 SNP_biallelic 377579 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 328027 INDEL_multiallelic 2782 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 280433 INDEL_multiallelic 2786 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 16450163 SNP_biallelic 347938 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15793025 SNP_biallelic 310966 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2747981 INDEL_biallelic 34611 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 574250 SNP_multiallelic 8973 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 317041 INDEL_multiallelic 2782 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 16426975 SNP_biallelic 332096 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2706541 INDEL_biallelic 34662 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 567758 SNP_multiallelic 8970 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 312785 INDEL_multiallelic 2783 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2729945 INDEL_biallelic 38015 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 30632786 SNP_biallelic 603735 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4212027 INDEL_biallelic 55446 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 662099 SNP_multiallelic 9007 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 356916 INDEL_multiallelic 2803 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 548384 SNP_multiallelic 8974 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27803714 SNP_biallelic 571347 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3907372 INDEL_biallelic 54392 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 632085 SNP_multiallelic 8997 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 335994 INDEL_multiallelic 2801 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 296731 INDEL_multiallelic 2781 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 15797241 SNP_biallelic 354629 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2636408 INDEL_biallelic 39633 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 581797 SNP_multiallelic 8978 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 18842523 SNP_biallelic 378185 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3019769 INDEL_biallelic 39245 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 320781 INDEL_multiallelic 2782 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 24588249 SNP_biallelic 485148 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3736370 INDEL_biallelic 49363 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 617635 SNP_multiallelic 8993 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 339812 INDEL_multiallelic 2793 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 19402672 SNP_biallelic 383674 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3074297 INDEL_biallelic 38924 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 589733 SNP_multiallelic 8973 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 329210 INDEL_multiallelic 2786 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 19641871 SNP_biallelic 380555 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3116304 INDEL_biallelic 38815 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 594173 SNP_multiallelic 8982 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 329861 INDEL_multiallelic 2780 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 30332451 SNP_biallelic 572639 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4343232 INDEL_biallelic 55511 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 680399 SNP_multiallelic 8999 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 369634 INDEL_multiallelic 2802 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_SNP_biallelic.no_monomorphic.vcf.gz 62244665 SNP_biallelic 632600 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8183712 INDEL_biallelic 48165 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_SNP_biallelic.no_monomorphic.vcf.gz 55381335 SNP_biallelic 721638 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7273188 INDEL_biallelic 58372 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_SNP_biallelic.no_monomorphic.vcf.gz 57206299 SNP_biallelic 620613 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7337679 INDEL_biallelic 42659 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_SNP_biallelic.no_monomorphic.vcf.gz 127081922 SNP_biallelic 1110773 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13982750 INDEL_biallelic 70835 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_SNP_biallelic.no_monomorphic.vcf.gz 65036932 SNP_biallelic 696786 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 8130549 INDEL_biallelic 48076 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1109336 SNP_multiallelic 8994 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 719035 INDEL_multiallelic 2793 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 959407 SNP_multiallelic 9001 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 592903 INDEL_multiallelic 2799 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1055060 SNP_multiallelic 8987 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 684998 INDEL_multiallelic 2791 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1703416 SNP_multiallelic 9026 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1060327 INDEL_multiallelic 2814 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1111659 SNP_multiallelic 8994 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 722835 INDEL_multiallelic 2796 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 569496 SNP_multiallelic 8647 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 565806 SNP_multiallelic 8643 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 30879880 SNP_biallelic 616752 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3915311 INDEL_biallelic 54042 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 636539 SNP_multiallelic 8659 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 351721 INDEL_multiallelic 2767 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 323488 INDEL_multiallelic 2760 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 323124 INDEL_multiallelic 2761 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 24180868 SNP_biallelic 549584 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3202258 INDEL_biallelic 50449 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 557918 SNP_multiallelic 8658 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 299479 INDEL_multiallelic 2766 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2493847 INDEL_biallelic 32232 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2502620 INDEL_biallelic 32335 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18891322 SNP_biallelic 393065 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2642947 INDEL_biallelic 36297 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 556691 SNP_multiallelic 8648 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 312352 INDEL_multiallelic 2763 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 565833 SNP_multiallelic 8647 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 324160 INDEL_multiallelic 2760 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15771210 SNP_biallelic 321430 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2347425 INDEL_biallelic 31154 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 551072 SNP_multiallelic 8644 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 311497 INDEL_multiallelic 2761 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3093585 INDEL_biallelic 42719 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18235697 SNP_biallelic 359069 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2653452 INDEL_biallelic 34586 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 17374411 SNP_biallelic 348311 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16849473 SNP_biallelic 335390 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22178050 SNP_biallelic 451326 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 579676 SNP_multiallelic 8653 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 326012 INDEL_multiallelic 2763 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 28851867 SNP_biallelic 561756 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3797169 INDEL_biallelic 51027 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 642420 SNP_multiallelic 8663 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 356478 INDEL_multiallelic 2771 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 32143626 SNP_biallelic 604480 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16693930 SNP_biallelic 321041 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2581173 INDEL_biallelic 33456 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 567089 SNP_multiallelic 8642 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 321694 INDEL_multiallelic 2757 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4074137 INDEL_biallelic 52000 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 334972 INDEL_multiallelic 2759 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 580712 SNP_multiallelic 8652 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16982992 SNP_biallelic 338623 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2542036 INDEL_biallelic 33913 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 558256 SNP_multiallelic 8646 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 313500 INDEL_multiallelic 2759 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 20213195 SNP_biallelic 391400 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 19075941 SNP_biallelic 369352 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2762449 INDEL_biallelic 35451 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 579244 SNP_multiallelic 8647 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 331172 INDEL_multiallelic 2761 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 672626 SNP_multiallelic 8663 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 378062 INDEL_multiallelic 2769 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2813391 INDEL_biallelic 36379 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2878752 INDEL_biallelic 36986 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 586338 SNP_multiallelic 8647 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 542853 SNP_multiallelic 8646 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19969283 SNP_biallelic 395010 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 332020 INDEL_multiallelic 2762 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 303977 INDEL_multiallelic 2761 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 16276855 SNP_biallelic 320653 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2476918 INDEL_biallelic 31647 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 566123 SNP_multiallelic 8648 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 325349 INDEL_multiallelic 2762 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 324724 INDEL_multiallelic 2761 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 17190205 SNP_biallelic 349111 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2484548 INDEL_biallelic 32507 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 560216 SNP_multiallelic 8647 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 319535 INDEL_multiallelic 2761 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 31019761 SNP_biallelic 614073 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3881132 INDEL_biallelic 52337 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 642008 SNP_multiallelic 8662 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 356507 INDEL_multiallelic 2767 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27910088 SNP_biallelic 575043 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3589727 INDEL_biallelic 51045 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 613632 SNP_multiallelic 8660 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 334725 INDEL_multiallelic 2767 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 17838669 SNP_biallelic 379505 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 16836985 SNP_biallelic 381631 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2463946 INDEL_biallelic 37747 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 518770 SNP_multiallelic 8649 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 284925 INDEL_multiallelic 2760 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2571674 INDEL_biallelic 36614 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 19540923 SNP_biallelic 393876 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2761354 INDEL_biallelic 36654 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 570463 SNP_multiallelic 8648 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 25646658 SNP_biallelic 508655 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3452671 INDEL_biallelic 46619 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 605699 SNP_multiallelic 8650 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 343752 INDEL_multiallelic 2763 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 20069857 SNP_biallelic 397065 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2828597 INDEL_biallelic 36590 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 581144 SNP_multiallelic 8652 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 332899 INDEL_multiallelic 2761 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 19705171 SNP_biallelic 381162 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2800685 INDEL_biallelic 35583 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 583031 SNP_multiallelic 8648 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 334352 INDEL_multiallelic 2760 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 30529422 SNP_biallelic 578455 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3986390 INDEL_biallelic 52258 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 662638 SNP_multiallelic 8664 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 368677 INDEL_multiallelic 2768 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_SNP_biallelic.no_monomorphic.vcf.gz 63042457 SNP_biallelic 620488 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7339388 INDEL_biallelic 44153 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_SNP_biallelic.no_monomorphic.vcf.gz 57392776 SNP_biallelic 737088 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6686842 INDEL_biallelic 55371 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_SNP_biallelic.no_monomorphic.vcf.gz 59576607 SNP_biallelic 622842 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6711459 INDEL_biallelic 39939 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_SNP_biallelic.no_monomorphic.vcf.gz 127969688 SNP_biallelic 1091871 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 12782701 INDEL_biallelic 66535 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_SNP_biallelic.no_monomorphic.vcf.gz 66793054 SNP_biallelic 696782 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7391333 INDEL_biallelic 45011 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1108183 SNP_multiallelic 8656 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 737559 INDEL_multiallelic 2763 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 957319 SNP_multiallelic 8661 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 609865 INDEL_multiallelic 2765 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1064428 SNP_multiallelic 8656 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 717043 INDEL_multiallelic 2764 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1670591 SNP_multiallelic 8675 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1064397 INDEL_multiallelic 2773 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1109140 SNP_multiallelic 8660 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 742779 INDEL_multiallelic 2767 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 272141 INDEL_multiallelic 2408 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 274900 INDEL_multiallelic 2411 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 25204640 SNP_biallelic 501542 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3419565 INDEL_biallelic 45832 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 562755 SNP_multiallelic 7711 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 302508 INDEL_multiallelic 2417 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2257073 INDEL_biallelic 28489 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2279247 INDEL_biallelic 28779 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 19869913 SNP_biallelic 449253 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2818570 INDEL_biallelic 43422 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 492883 SNP_multiallelic 7705 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 258477 INDEL_multiallelic 2414 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 497231 SNP_multiallelic 7689 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 271908 INDEL_multiallelic 2406 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 15436796 SNP_biallelic 320021 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2370261 INDEL_biallelic 31771 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 494320 SNP_multiallelic 7699 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 265394 INDEL_multiallelic 2410 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2802484 INDEL_biallelic 37829 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 12820901 SNP_biallelic 260622 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2135604 INDEL_biallelic 27771 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 484547 SNP_multiallelic 7690 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 261678 INDEL_multiallelic 2404 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 13964547 SNP_biallelic 278985 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 15025232 SNP_biallelic 294554 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2413036 INDEL_biallelic 30722 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 502989 SNP_multiallelic 7694 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 496851 SNP_multiallelic 7688 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 13554792 SNP_biallelic 268952 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 515430 SNP_multiallelic 7690 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 18591537 SNP_biallelic 377923 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 513719 SNP_multiallelic 7701 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 278222 INDEL_multiallelic 2410 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 26093685 SNP_biallelic 488368 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 323902 INDEL_multiallelic 2416 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 23672816 SNP_biallelic 458956 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3343673 INDEL_biallelic 43650 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 566900 SNP_multiallelic 7704 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 306358 INDEL_multiallelic 2415 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3566116 INDEL_biallelic 44060 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 284194 INDEL_multiallelic 2409 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2523866 INDEL_biallelic 31764 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 13561220 SNP_biallelic 258591 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2321417 INDEL_biallelic 29366 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 500298 SNP_multiallelic 7692 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 273200 INDEL_multiallelic 2411 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 592383 SNP_multiallelic 7713 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 13885754 SNP_biallelic 274995 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2295137 INDEL_biallelic 29909 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 493473 SNP_multiallelic 7689 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 267362 INDEL_multiallelic 2410 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 517239 SNP_multiallelic 7692 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 16461313 SNP_biallelic 317920 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 15766832 SNP_biallelic 305025 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2513123 INDEL_biallelic 31518 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 515714 SNP_multiallelic 7694 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 281583 INDEL_multiallelic 2412 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2591771 INDEL_biallelic 32492 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 458368 SNP_multiallelic 7697 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 16140660 SNP_biallelic 317219 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 281861 INDEL_multiallelic 2411 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 243260 INDEL_multiallelic 2411 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 13936673 SNP_biallelic 295021 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 13264257 SNP_biallelic 261304 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2270919 INDEL_biallelic 28546 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 496610 SNP_multiallelic 7691 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 272734 INDEL_multiallelic 2407 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 13900458 SNP_biallelic 281462 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2257626 INDEL_biallelic 28923 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 492075 SNP_multiallelic 7692 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 268908 INDEL_multiallelic 2408 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2251568 INDEL_biallelic 31231 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 24975004 SNP_biallelic 490249 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3388701 INDEL_biallelic 44322 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 567804 SNP_multiallelic 7707 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 307463 INDEL_multiallelic 2413 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 474781 SNP_multiallelic 7693 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 22988113 SNP_biallelic 471723 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3157968 INDEL_biallelic 43696 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 543525 SNP_multiallelic 7708 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 287689 INDEL_multiallelic 2413 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 256368 INDEL_multiallelic 2410 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 13943712 SNP_biallelic 315172 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2223384 INDEL_biallelic 33524 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 506792 SNP_multiallelic 7694 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 15851924 SNP_biallelic 317688 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2488488 INDEL_biallelic 32237 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 276329 INDEL_multiallelic 2412 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 20502845 SNP_biallelic 405607 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3030348 INDEL_biallelic 39859 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 533471 SNP_multiallelic 7706 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 291536 INDEL_multiallelic 2416 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 16336464 SNP_biallelic 321664 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2533939 INDEL_biallelic 31845 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 516250 SNP_multiallelic 7694 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 282519 INDEL_multiallelic 2411 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 16373866 SNP_biallelic 316318 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2557258 INDEL_biallelic 31776 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 517540 SNP_multiallelic 7692 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 284964 INDEL_multiallelic 2410 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 25105433 SNP_biallelic 474482 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3507632 INDEL_biallelic 44587 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 585588 SNP_multiallelic 7708 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 317398 INDEL_multiallelic 2414 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_SNP_biallelic.no_monomorphic.vcf.gz 51557410 SNP_biallelic 512798 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 6670213 INDEL_biallelic 38662 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_SNP_biallelic.no_monomorphic.vcf.gz 46343928 SNP_biallelic 598221 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 5934117 INDEL_biallelic 47143 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_SNP_biallelic.no_monomorphic.vcf.gz 47891170 SNP_biallelic 505951 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6109806 INDEL_biallelic 35046 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_SNP_biallelic.no_monomorphic.vcf.gz 104042054 SNP_biallelic 885187 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 11256862 INDEL_biallelic 55827 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_SNP_biallelic.no_monomorphic.vcf.gz 54533703 SNP_biallelic 570541 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 6720619 INDEL_biallelic 39220 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 979640 SNP_multiallelic 7707 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 617249 INDEL_multiallelic 2416 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 840572 SNP_multiallelic 7714 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 509287 INDEL_multiallelic 2418 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 928968 SNP_multiallelic 7701 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 587918 INDEL_multiallelic 2412 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1467254 SNP_multiallelic 7726 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 905459 INDEL_multiallelic 2420 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 989077 SNP_multiallelic 7707 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 619911 INDEL_multiallelic 2415 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 239582 INDEL_multiallelic 2084 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 242264 INDEL_multiallelic 2086 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 24285063 SNP_biallelic 485991 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3002767 INDEL_biallelic 41094 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 490679 SNP_multiallelic 6839 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 266608 INDEL_multiallelic 2094 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1865802 INDEL_biallelic 23692 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1869488 INDEL_biallelic 23691 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 18969612 SNP_biallelic 430932 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2456005 INDEL_biallelic 38322 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 430868 SNP_multiallelic 6840 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 227568 INDEL_multiallelic 2093 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 430550 SNP_multiallelic 6830 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 240007 INDEL_multiallelic 2083 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 14427603 SNP_biallelic 301953 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1992350 INDEL_biallelic 26983 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 428060 SNP_multiallelic 6831 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 233899 INDEL_multiallelic 2086 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2398956 INDEL_biallelic 32876 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 11870845 SNP_biallelic 242878 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1758783 INDEL_biallelic 22920 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 420298 SNP_multiallelic 6830 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 231131 INDEL_multiallelic 2083 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 12982662 SNP_biallelic 261861 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 13986194 SNP_biallelic 276589 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2015841 INDEL_biallelic 25836 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 437540 SNP_multiallelic 6832 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 430224 SNP_multiallelic 6832 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 12636838 SNP_biallelic 252971 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 446263 SNP_multiallelic 6831 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 17702998 SNP_biallelic 363162 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 446407 SNP_multiallelic 6835 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 245851 INDEL_multiallelic 2090 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 25344671 SNP_biallelic 476623 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 286905 INDEL_multiallelic 2093 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 22822611 SNP_biallelic 445179 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 2919259 INDEL_biallelic 38845 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 493676 SNP_multiallelic 6832 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 269939 INDEL_multiallelic 2092 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3130148 INDEL_biallelic 39574 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 250948 INDEL_multiallelic 2085 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2120716 INDEL_biallelic 27005 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 12723576 SNP_biallelic 245358 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1951395 INDEL_biallelic 24884 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 435624 SNP_multiallelic 6832 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 240784 INDEL_multiallelic 2085 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 516988 SNP_multiallelic 6838 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 13054130 SNP_biallelic 261978 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1931332 INDEL_biallelic 25452 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 429361 SNP_multiallelic 6833 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 235662 INDEL_multiallelic 2085 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 450745 SNP_multiallelic 6836 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 15573879 SNP_biallelic 303150 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 14744542 SNP_biallelic 287746 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2101205 INDEL_biallelic 26621 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 445713 SNP_multiallelic 6831 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 247775 INDEL_multiallelic 2083 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2189387 INDEL_biallelic 27738 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 397006 SNP_multiallelic 6828 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 15221616 SNP_biallelic 302639 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 248121 INDEL_multiallelic 2086 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 212685 INDEL_multiallelic 2086 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 13209617 SNP_biallelic 282766 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 12275486 SNP_biallelic 243186 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1872517 INDEL_biallelic 23546 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 432049 SNP_multiallelic 6835 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 240697 INDEL_multiallelic 2083 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 12999125 SNP_biallelic 265621 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1865197 INDEL_biallelic 23945 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 426708 SNP_multiallelic 6830 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 236919 INDEL_multiallelic 2081 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1895360 INDEL_biallelic 26542 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 24232930 SNP_biallelic 478618 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 2967332 INDEL_biallelic 39551 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 496038 SNP_multiallelic 6841 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 270202 INDEL_multiallelic 2093 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 414088 SNP_multiallelic 6835 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 21992889 SNP_biallelic 453353 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2752845 INDEL_biallelic 38777 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 473440 SNP_multiallelic 6833 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 254211 INDEL_multiallelic 2092 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 226248 INDEL_multiallelic 2085 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 12635697 SNP_biallelic 287901 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1834044 INDEL_biallelic 27709 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 439715 SNP_multiallelic 6835 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 14923530 SNP_biallelic 301919 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2091912 INDEL_biallelic 27372 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 243247 INDEL_multiallelic 2087 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 19748861 SNP_biallelic 392150 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2626993 INDEL_biallelic 35015 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 464603 SNP_multiallelic 6836 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 258228 INDEL_multiallelic 2091 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 15262900 SNP_biallelic 303442 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2125937 INDEL_biallelic 27032 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 446407 SNP_multiallelic 6831 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 248019 INDEL_multiallelic 2086 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 15355207 SNP_biallelic 298774 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2145213 INDEL_biallelic 26867 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 449818 SNP_multiallelic 6833 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 251041 INDEL_multiallelic 2087 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 24093195 SNP_biallelic 456844 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3072973 INDEL_biallelic 39900 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 509074 SNP_multiallelic 6840 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 279262 INDEL_multiallelic 2093 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_SNP_biallelic.no_monomorphic.vcf.gz 49022741 SNP_biallelic 489019 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 5614318 INDEL_biallelic 33228 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_SNP_biallelic.no_monomorphic.vcf.gz 44586010 SNP_biallelic 580035 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 5098101 INDEL_biallelic 41875 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_SNP_biallelic.no_monomorphic.vcf.gz 45466157 SNP_biallelic 487696 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 5055426 INDEL_biallelic 29700 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_SNP_biallelic.no_monomorphic.vcf.gz 100810801 SNP_biallelic 866246 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 9804566 INDEL_biallelic 50717 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_SNP_biallelic.no_monomorphic.vcf.gz 51602381 SNP_biallelic 547012 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 5620746 INDEL_biallelic 33812 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 839439 SNP_multiallelic 6841 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 545855 INDEL_multiallelic 2090 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 723529 SNP_multiallelic 6846 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 451030 INDEL_multiallelic 2094 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 789978 SNP_multiallelic 6841 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 519364 INDEL_multiallelic 2087 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1268807 SNP_multiallelic 6848 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 799769 INDEL_multiallelic 2095 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 842255 SNP_multiallelic 6842 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 546597 INDEL_multiallelic 2090 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 179169 INDEL_multiallelic 1516 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 180026 INDEL_multiallelic 1514 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 15492110 SNP_biallelic 306471 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 2086449 INDEL_biallelic 28844 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 365444 SNP_multiallelic 4853 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 195214 INDEL_multiallelic 1520 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1321385 INDEL_biallelic 17095 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1320056 INDEL_biallelic 17084 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 12101997 SNP_biallelic 272435 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1708929 INDEL_biallelic 26982 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 319398 SNP_multiallelic 4855 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 165826 INDEL_multiallelic 1515 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 325110 SNP_multiallelic 4845 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 179721 INDEL_multiallelic 1515 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 9270770 SNP_biallelic 190815 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1394628 INDEL_biallelic 19240 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 319245 SNP_multiallelic 4849 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 173993 INDEL_multiallelic 1518 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1649043 INDEL_biallelic 22943 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 7873495 SNP_biallelic 158306 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1262086 INDEL_biallelic 16830 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 316864 SNP_multiallelic 4846 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 173450 INDEL_multiallelic 1515 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 8464051 SNP_biallelic 167248 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 8935167 SNP_biallelic 173995 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1398911 INDEL_biallelic 18331 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 325149 SNP_multiallelic 4847 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 326007 SNP_multiallelic 4848 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 8261523 SNP_biallelic 162096 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 333173 SNP_multiallelic 4849 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 11130259 SNP_biallelic 225159 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 332005 SNP_multiallelic 4847 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 181433 INDEL_multiallelic 1519 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 16200576 SNP_biallelic 302002 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 209621 INDEL_multiallelic 1519 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 14646195 SNP_biallelic 283023 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 2038257 INDEL_biallelic 27490 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 369495 SNP_multiallelic 4854 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 197773 INDEL_multiallelic 1518 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 2176985 INDEL_biallelic 27868 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 186493 INDEL_multiallelic 1518 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1483950 INDEL_biallelic 19302 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 8223257 SNP_biallelic 156342 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1357936 INDEL_biallelic 17695 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 324099 SNP_multiallelic 4847 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 179375 INDEL_multiallelic 1516 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 385921 SNP_multiallelic 4854 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 8396796 SNP_biallelic 165883 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1336160 INDEL_biallelic 17965 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 319298 SNP_multiallelic 4846 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 174318 INDEL_multiallelic 1516 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 335890 SNP_multiallelic 4848 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 10237448 SNP_biallelic 197533 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 9418575 SNP_biallelic 180630 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1464085 INDEL_biallelic 18957 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 333316 SNP_multiallelic 4849 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 184282 INDEL_multiallelic 1517 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1539476 INDEL_biallelic 20024 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 295061 SNP_multiallelic 4846 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 9816615 SNP_biallelic 192610 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 184226 INDEL_multiallelic 1515 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 156984 INDEL_multiallelic 1513 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 8434395 SNP_biallelic 178679 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 8021206 SNP_biallelic 156131 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1316745 INDEL_biallelic 16962 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 325418 SNP_multiallelic 4845 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 179191 INDEL_multiallelic 1513 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 8547093 SNP_biallelic 171492 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1327377 INDEL_biallelic 17419 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 321777 SNP_multiallelic 4846 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 177682 INDEL_multiallelic 1515 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1325802 INDEL_biallelic 19022 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 15619835 SNP_biallelic 306624 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 2075670 INDEL_biallelic 28069 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 369544 SNP_multiallelic 4857 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 197414 INDEL_multiallelic 1517 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 307098 SNP_multiallelic 4847 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 14210085 SNP_biallelic 290452 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1935044 INDEL_biallelic 27606 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 353168 SNP_multiallelic 4854 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 185728 INDEL_multiallelic 1518 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 166179 INDEL_multiallelic 1519 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 8110414 SNP_biallelic 182877 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1277113 INDEL_biallelic 19697 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 328795 SNP_multiallelic 4851 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 9664492 SNP_biallelic 193045 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1467647 INDEL_biallelic 19603 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 180354 INDEL_multiallelic 1514 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 12772831 SNP_biallelic 250986 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1838582 INDEL_biallelic 24965 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 347934 SNP_multiallelic 4848 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 190809 INDEL_multiallelic 1519 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 9812370 SNP_biallelic 192182 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1483927 INDEL_biallelic 19262 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 333651 SNP_multiallelic 4857 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 185120 INDEL_multiallelic 1518 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 9832959 SNP_biallelic 188340 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1493061 INDEL_biallelic 19109 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 335181 SNP_multiallelic 4847 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 186044 INDEL_multiallelic 1515 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 15467689 SNP_biallelic 290639 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 2135026 INDEL_biallelic 28089 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 381128 SNP_multiallelic 4853 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 204745 INDEL_multiallelic 1519 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_SNP_biallelic.no_monomorphic.vcf.gz 31491833 SNP_biallelic 308738 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3885229 INDEL_biallelic 23861 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_SNP_biallelic.no_monomorphic.vcf.gz 28095643 SNP_biallelic 358850 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3501827 INDEL_biallelic 29268 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_SNP_biallelic.no_monomorphic.vcf.gz 29398877 SNP_biallelic 302412 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3552467 INDEL_biallelic 21125 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_SNP_biallelic.no_monomorphic.vcf.gz 64029265 SNP_biallelic 539979 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6773349 INDEL_biallelic 35466 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_SNP_biallelic.no_monomorphic.vcf.gz 32895176 SNP_biallelic 338546 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3894347 INDEL_biallelic 23862 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 637320 SNP_multiallelic 4857 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 411356 INDEL_multiallelic 1521 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 547070 SNP_multiallelic 4857 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 335709 INDEL_multiallelic 1524 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 619489 SNP_multiallelic 4856 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 398671 INDEL_multiallelic 1525 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 967056 SNP_multiallelic 4868 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 588593 INDEL_multiallelic 1525 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 642144 SNP_multiallelic 4862 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 412627 INDEL_multiallelic 1522 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 156153 INDEL_multiallelic 1343 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 157432 INDEL_multiallelic 1343 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 15333343 SNP_biallelic 302187 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 1994202 INDEL_biallelic 26788 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 367602 SNP_multiallelic 5241 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 170450 INDEL_multiallelic 1344 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1286150 INDEL_biallelic 16069 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1304561 INDEL_biallelic 16322 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 12071993 SNP_biallelic 270667 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1632136 INDEL_biallelic 25113 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 321215 SNP_multiallelic 5230 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 145998 INDEL_multiallelic 1345 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 324119 SNP_multiallelic 5225 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 156356 INDEL_multiallelic 1344 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 9420980 SNP_biallelic 193189 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1375635 INDEL_biallelic 18313 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 322118 SNP_multiallelic 5231 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 152445 INDEL_multiallelic 1343 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1596271 INDEL_biallelic 21376 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 7823758 SNP_biallelic 156933 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1227617 INDEL_biallelic 15817 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 316220 SNP_multiallelic 5224 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 150445 INDEL_multiallelic 1341 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 8510803 SNP_biallelic 167837 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 9090419 SNP_biallelic 176288 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1388157 INDEL_biallelic 17498 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 327419 SNP_multiallelic 5223 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 324829 SNP_multiallelic 5226 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 8164501 SNP_biallelic 159417 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 334343 SNP_multiallelic 5224 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 11069224 SNP_biallelic 222680 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 333213 SNP_multiallelic 5229 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 158557 INDEL_multiallelic 1343 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 15960273 SNP_biallelic 295255 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 183511 INDEL_multiallelic 1347 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 14219534 SNP_biallelic 272383 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 1922537 INDEL_biallelic 25082 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 369384 SNP_multiallelic 5238 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 172347 INDEL_multiallelic 1345 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 2071471 INDEL_biallelic 25688 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 161849 INDEL_multiallelic 1342 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1463691 INDEL_biallelic 18312 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 8271707 SNP_biallelic 155807 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1353114 INDEL_biallelic 16951 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 325798 SNP_multiallelic 5222 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 156560 INDEL_multiallelic 1344 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 386306 SNP_multiallelic 5238 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 8356744 SNP_biallelic 163692 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1313800 INDEL_biallelic 16931 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 320277 SNP_multiallelic 5224 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 152323 INDEL_multiallelic 1342 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 336007 SNP_multiallelic 5227 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 10052317 SNP_biallelic 192073 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 9628576 SNP_biallelic 184003 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1454171 INDEL_biallelic 18143 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 335537 SNP_multiallelic 5229 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 160996 INDEL_multiallelic 1342 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1505140 INDEL_biallelic 18772 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 296382 SNP_multiallelic 5223 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 9920161 SNP_biallelic 193311 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 161385 INDEL_multiallelic 1343 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 138210 INDEL_multiallelic 1342 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 8567945 SNP_biallelic 180924 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 8120679 SNP_biallelic 157963 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1300447 INDEL_biallelic 16170 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 325101 SNP_multiallelic 5225 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 156749 INDEL_multiallelic 1344 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 8560889 SNP_biallelic 171499 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1301616 INDEL_biallelic 16565 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 322259 SNP_multiallelic 5226 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 154670 INDEL_multiallelic 1342 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1302975 INDEL_biallelic 18075 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 15268219 SNP_biallelic 297366 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 1968253 INDEL_biallelic 25761 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 370037 SNP_multiallelic 5234 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 172579 INDEL_multiallelic 1349 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 309236 SNP_multiallelic 5227 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 13856818 SNP_biallelic 281017 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1827286 INDEL_biallelic 25314 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 354221 SNP_multiallelic 5240 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 162779 INDEL_multiallelic 1344 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 146922 INDEL_multiallelic 1342 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 7885185 SNP_biallelic 175333 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1224504 INDEL_biallelic 18159 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 329303 SNP_multiallelic 5228 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 9678731 SNP_biallelic 192069 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1433554 INDEL_biallelic 18432 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 157969 INDEL_multiallelic 1343 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 12300629 SNP_biallelic 240264 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1745816 INDEL_biallelic 22847 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 345672 SNP_multiallelic 5233 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 165778 INDEL_multiallelic 1344 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 9974571 SNP_biallelic 194381 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1468723 INDEL_biallelic 18390 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 335418 SNP_multiallelic 5228 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 161444 INDEL_multiallelic 1342 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 9925064 SNP_biallelic 189344 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1470957 INDEL_biallelic 18069 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 335653 SNP_multiallelic 5226 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 162492 INDEL_multiallelic 1344 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 15065305 SNP_biallelic 280541 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 2019209 INDEL_biallelic 25662 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 380890 SNP_multiallelic 5237 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 178674 INDEL_multiallelic 1345 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_SNP_biallelic.no_monomorphic.vcf.gz 31294117 SNP_biallelic 308105 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 351790 INDEL_multiallelic 1345 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_SNP_biallelic.no_monomorphic.vcf.gz 29081628 SNP_biallelic 305506 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3857664 INDEL_biallelic 22410 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3499066 INDEL_biallelic 20180 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 289350 INDEL_multiallelic 1345 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_SNP_biallelic.no_monomorphic.vcf.gz 27658456 SNP_biallelic 354667 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 538008 SNP_multiallelic 5240 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_SNP_biallelic.no_monomorphic.vcf.gz 62436403 SNP_biallelic 533936 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 627385 SNP_multiallelic 5237 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3398195 INDEL_biallelic 27143 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 598447 SNP_multiallelic 5232 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 336833 INDEL_multiallelic 1345 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6451076 INDEL_biallelic 32808 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 943363 SNP_multiallelic 5252 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 503107 INDEL_multiallelic 1351 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_SNP_biallelic.no_monomorphic.vcf.gz 33101122 SNP_biallelic 343680 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3861621 INDEL_biallelic 22496 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 633655 SNP_multiallelic 5238 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 354134 INDEL_multiallelic 1343 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 330977 INDEL_multiallelic 2668 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 31870742 SNP_biallelic 611601 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3302050 INDEL_biallelic 41189 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 673362 SNP_multiallelic 8771 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 566968 SNP_multiallelic 8771 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22828824 SNP_biallelic 481797 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 26616427 SNP_biallelic 618303 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2713708 INDEL_biallelic 41022 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 274346 INDEL_multiallelic 2668 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 14401106 SNP_biallelic 300453 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2064099 INDEL_biallelic 28140 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 557421 SNP_multiallelic 8771 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 279048 INDEL_multiallelic 2668 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 13228012 SNP_biallelic 280916 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1888920 INDEL_biallelic 25788 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 539279 SNP_multiallelic 8771 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 268537 INDEL_multiallelic 2668 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2639571 INDEL_biallelic 36640 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 17030376 SNP_biallelic 340951 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2151417 INDEL_biallelic 27993 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 569978 SNP_multiallelic 8771 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 284267 INDEL_multiallelic 2668 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16071999 SNP_biallelic 323337 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2075873 INDEL_biallelic 26440 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 572344 SNP_multiallelic 8771 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 290130 INDEL_multiallelic 2668 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 15284190 SNP_biallelic 325499 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1958533 INDEL_biallelic 26330 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 551099 SNP_multiallelic 8771 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 273358 INDEL_multiallelic 2668 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 586345 SNP_multiallelic 8771 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 290047 INDEL_multiallelic 2668 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 579963 SNP_multiallelic 8771 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 29675534 SNP_biallelic 577564 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3155120 INDEL_biallelic 39909 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 661412 SNP_multiallelic 8771 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 324102 INDEL_multiallelic 2668 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 294697 INDEL_multiallelic 2668 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 17002854 SNP_biallelic 328677 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2186478 INDEL_biallelic 27759 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 581639 SNP_multiallelic 8771 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 290972 INDEL_multiallelic 2668 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16309694 SNP_biallelic 335294 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2080043 INDEL_biallelic 27599 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 562343 SNP_multiallelic 8771 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 279654 INDEL_multiallelic 2668 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 15037450 SNP_biallelic 292430 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2179225 INDEL_biallelic 27793 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 578675 SNP_multiallelic 8771 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 293481 INDEL_multiallelic 2668 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 29209380 SNP_biallelic 564570 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3144384 INDEL_biallelic 40069 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 658346 SNP_multiallelic 8771 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 323397 INDEL_multiallelic 2668 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 18072342 SNP_biallelic 362681 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2290063 INDEL_biallelic 30233 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 578173 SNP_multiallelic 8771 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 288404 INDEL_multiallelic 2668 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 14607199 SNP_biallelic 285274 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2183948 INDEL_biallelic 27752 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15262132 SNP_biallelic 304072 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2040503 INDEL_biallelic 25957 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 573722 SNP_multiallelic 8771 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 289637 INDEL_multiallelic 2668 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2863012 INDEL_biallelic 38955 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 14838268 SNP_biallelic 294645 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2061203 INDEL_biallelic 26395 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 569857 SNP_multiallelic 8771 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 288794 INDEL_multiallelic 2668 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 606251 SNP_multiallelic 8771 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 36040965 SNP_biallelic 685264 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3433934 INDEL_biallelic 41350 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 694713 SNP_multiallelic 8771 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 341243 INDEL_multiallelic 2668 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 300732 INDEL_multiallelic 2668 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27336700 SNP_biallelic 557223 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2968600 INDEL_biallelic 39461 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 636733 SNP_multiallelic 8771 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 310996 INDEL_multiallelic 2668 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 15726749 SNP_biallelic 381547 64 hg38 X AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1971951 INDEL_biallelic 31588 64 hg38 X AMR MXL 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/mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 46003 SNP_biallelic 1250 46 hg38 Y EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 2708 SNP_multiallelic 0 46 hg38 Y EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 71548 SNP_biallelic 1889 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 2729 SNP_multiallelic 0 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 67030 SNP_biallelic 1828 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 2742 SNP_multiallelic 0 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 75451 SNP_biallelic 2088 54 hg38 Y EUR IBS 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/mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 2739 SNP_multiallelic 0 55 hg38 Y SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 82369 SNP_biallelic 2239 53 hg38 Y EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 2719 SNP_multiallelic 0 53 hg38 Y EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 49130 SNP_biallelic 1321 52 hg38 Y AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 2725 SNP_multiallelic 0 52 hg38 Y AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 78953 SNP_biallelic 2171 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6092 INDEL_biallelic 62 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 2715 INDEL_multiallelic 0 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5355 INDEL_biallelic 52 26 hg38 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5435 INDEL_biallelic 49 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 2701 INDEL_multiallelic 0 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4812 INDEL_biallelic 35 44 hg38 Y EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 2707 INDEL_multiallelic 0 44 hg38 Y EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4719 INDEL_biallelic 32 49 hg38 Y EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 2729 INDEL_multiallelic 0 49 hg38 Y EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5280 INDEL_biallelic 45 46 hg38 Y EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 2703 INDEL_multiallelic 0 46 hg38 Y EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5324 INDEL_biallelic 46 52 hg38 Y EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 2728 INDEL_multiallelic 0 52 hg38 Y EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5895 INDEL_biallelic 60 43 hg38 Y AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 2706 INDEL_multiallelic 0 43 hg38 Y AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5033 INDEL_biallelic 42 53 hg38 Y AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 2731 INDEL_multiallelic 0 53 hg38 Y AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4696 INDEL_biallelic 31 38 hg38 Y EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 2688 INDEL_multiallelic 0 38 hg38 Y EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4665 INDEL_biallelic 32 46 hg38 Y EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 2708 INDEL_multiallelic 0 46 hg38 Y EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5075 INDEL_biallelic 38 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 2729 INDEL_multiallelic 0 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6181 INDEL_biallelic 62 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 2742 INDEL_multiallelic 0 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5258 INDEL_biallelic 46 54 hg38 Y EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 2731 INDEL_multiallelic 0 54 hg38 Y EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5194 INDEL_biallelic 42 59 hg38 Y SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 2738 INDEL_multiallelic 0 59 hg38 Y SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6459 INDEL_biallelic 68 56 hg38 Y EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 2731 INDEL_multiallelic 0 56 hg38 Y EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4889 INDEL_biallelic 36 46 hg38 Y EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 2711 INDEL_multiallelic 0 46 hg38 Y EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6216 INDEL_biallelic 67 44 hg38 Y AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 2706 INDEL_multiallelic 0 44 hg38 Y AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 2705 INDEL_multiallelic 0 42 hg38 Y AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5339 INDEL_biallelic 50 32 hg38 Y AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 2670 INDEL_multiallelic 0 32 hg38 Y AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4987 INDEL_biallelic 42 41 hg38 Y AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 2704 INDEL_multiallelic 0 41 hg38 Y AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4946 INDEL_biallelic 38 48 hg38 Y SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 2722 INDEL_multiallelic 0 48 hg38 Y SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6706 INDEL_biallelic 75 54 hg38 Y AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 2730 INDEL_multiallelic 0 54 hg38 Y AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5117 INDEL_biallelic 40 55 hg38 Y SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 2739 INDEL_multiallelic 0 55 hg38 Y SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5670 INDEL_biallelic 52 53 hg38 Y EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 2719 INDEL_multiallelic 0 53 hg38 Y EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5170 INDEL_biallelic 43 52 hg38 Y AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 2725 INDEL_multiallelic 0 52 hg38 Y AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EUR_SNP_biallelic.no_monomorphic.vcf.gz 138411 SNP_biallelic 2490 240 hg38 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 3256 SNP_multiallelic 0 240 hg38 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AMR_SNP_biallelic.no_monomorphic.vcf.gz 152250 SNP_biallelic 3146 170 hg38 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 3088 SNP_multiallelic 0 170 hg38 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EAS_SNP_biallelic.no_monomorphic.vcf.gz 162093 SNP_biallelic 2855 244 hg38 Y EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 3251 SNP_multiallelic 0 244 hg38 Y EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AFR_SNP_biallelic.no_monomorphic.vcf.gz 176000 SNP_biallelic 2938 319 hg38 Y AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 10461 INDEL_biallelic 79 319 hg38 Y AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7972 INDEL_biallelic 59 240 hg38 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 3258 INDEL_multiallelic 0 240 hg38 Y EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 8305 INDEL_biallelic 78 170 hg38 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 3089 INDEL_multiallelic 0 170 hg38 Y AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 8827 INDEL_biallelic 76 244 hg38 Y EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 3253 INDEL_multiallelic 0 244 hg38 Y EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3472 SNP_multiallelic 0 319 hg38 Y AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 3474 INDEL_multiallelic 0 319 hg38 Y AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_SAS_SNP_biallelic.no_monomorphic.vcf.gz 167819 SNP_biallelic 2743 260 hg38 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7926 INDEL_biallelic 58 260 hg38 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 3295 SNP_multiallelic 0 260 hg38 Y SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/Y_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 3296 INDEL_multiallelic 0 260 hg38 Y SAS SUPER