/mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 931836 INDEL_multiallelic 7398 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 84535032 SNP_biallelic 1710292 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 11093114 INDEL_biallelic 152865 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 2552169 SNP_multiallelic 48793 96 hg38 1 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 2244963 SNP_multiallelic 48776 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 60391832 SNP_biallelic 1246742 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 66135508 SNP_biallelic 1522538 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 9097101 INDEL_biallelic 143475 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 794199 INDEL_multiallelic 7385 61 hg38 1 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 51381667 SNP_biallelic 1086664 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 7524295 INDEL_biallelic 103388 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 2279232 SNP_multiallelic 48754 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 829634 INDEL_multiallelic 7372 86 hg38 1 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 42824751 SNP_biallelic 889312 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6724794 INDEL_biallelic 89453 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 2263071 SNP_multiallelic 48738 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 820098 INDEL_multiallelic 7350 93 hg38 1 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 8790496 INDEL_biallelic 121128 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 49594074 SNP_biallelic 992770 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 7578246 INDEL_biallelic 98740 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 2313475 SNP_multiallelic 48744 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 856758 INDEL_multiallelic 7361 99 hg38 1 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 47016197 SNP_biallelic 958988 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 7144846 INDEL_biallelic 92326 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 2312022 SNP_multiallelic 48741 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 852411 INDEL_multiallelic 7357 103 hg38 1 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 45842151 SNP_biallelic 928936 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 7134771 INDEL_biallelic 92217 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 2315200 SNP_multiallelic 48744 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 853227 INDEL_multiallelic 7355 105 hg38 1 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 2344590 SNP_multiallelic 48768 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 864636 INDEL_multiallelic 7383 94 hg38 1 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 2364961 SNP_multiallelic 48748 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 78844514 SNP_biallelic 1556839 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 10773582 INDEL_biallelic 144615 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 2560266 SNP_multiallelic 48787 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 941254 INDEL_multiallelic 7385 99 hg38 1 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 882965 INDEL_multiallelic 7371 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 45141027 SNP_biallelic 879652 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 7342729 INDEL_biallelic 95061 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 2305170 SNP_multiallelic 48746 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 852425 INDEL_multiallelic 7360 99 hg38 1 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 46170546 SNP_biallelic 936110 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 7233307 INDEL_biallelic 96592 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 2276238 SNP_multiallelic 48736 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 830712 INDEL_multiallelic 7356 91 hg38 1 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 52219462 SNP_biallelic 1029833 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7900796 INDEL_biallelic 101619 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 2363228 SNP_multiallelic 48748 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 878314 INDEL_multiallelic 7362 103 hg38 1 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 87270700 SNP_biallelic 1663671 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 11522739 INDEL_biallelic 146769 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 2660850 SNP_multiallelic 48797 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 999190 INDEL_multiallelic 7395 113 hg38 1 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 55581234 SNP_biallelic 1098080 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 8260624 INDEL_biallelic 106472 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 2370145 SNP_multiallelic 48754 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 888181 INDEL_multiallelic 7371 107 hg38 1 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 54093212 SNP_biallelic 1086650 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 8020904 INDEL_biallelic 103635 102 hg38 1 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 44725062 SNP_biallelic 898053 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 7139133 INDEL_biallelic 91671 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 2314702 SNP_multiallelic 48749 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 855531 INDEL_multiallelic 7358 104 hg38 1 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 9835471 INDEL_biallelic 132627 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 46778002 SNP_biallelic 966717 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 7116969 INDEL_biallelic 93302 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 2295266 SNP_multiallelic 48746 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 840868 INDEL_multiallelic 7352 99 hg38 1 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 2429981 SNP_multiallelic 48772 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 84412091 SNP_biallelic 1691206 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 10946620 INDEL_biallelic 147279 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 2562417 SNP_multiallelic 48792 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 941734 INDEL_multiallelic 7393 99 hg38 1 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 911985 INDEL_multiallelic 7382 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 76231750 SNP_biallelic 1591926 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 10173729 INDEL_biallelic 144509 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 2456383 SNP_multiallelic 48787 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 884797 INDEL_multiallelic 7390 85 hg38 1 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 45199626 SNP_biallelic 1040188 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6950289 INDEL_biallelic 106399 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 2106612 SNP_multiallelic 48751 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 753012 INDEL_multiallelic 7365 64 hg38 1 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 47806005 SNP_biallelic 1030891 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 7259986 INDEL_biallelic 103136 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 2201417 SNP_multiallelic 48746 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 802699 INDEL_multiallelic 7370 85 hg38 1 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 53000924 SNP_biallelic 1084764 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7891743 INDEL_biallelic 104738 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 2336495 SNP_multiallelic 48761 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 863073 INDEL_multiallelic 7376 96 hg38 1 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 69818176 SNP_biallelic 1401623 104 hg38 1 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 54325900 SNP_biallelic 1091582 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 8029832 INDEL_biallelic 103547 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 2365444 SNP_multiallelic 48750 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 883638 INDEL_multiallelic 7370 102 hg38 1 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 53873282 SNP_biallelic 1060833 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7986220 INDEL_biallelic 101401 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 2362491 SNP_multiallelic 48744 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 887010 INDEL_multiallelic 7364 107 hg38 1 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 83532459 SNP_biallelic 1604513 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 11292002 INDEL_biallelic 147631 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 2624964 SNP_multiallelic 48793 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/pop/1_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 973624 INDEL_multiallelic 7387 108 hg38 1 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_SNP_biallelic.no_monomorphic.vcf.gz 174804700 SNP_biallelic 1766346 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 21205954 INDEL_biallelic 127097 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_SNP_biallelic.no_monomorphic.vcf.gz 157105926 SNP_biallelic 2046136 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 19095447 INDEL_biallelic 156707 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_SNP_biallelic.no_monomorphic.vcf.gz 163516557 SNP_biallelic 1743812 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 19263695 INDEL_biallelic 113394 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_SNP_biallelic.no_monomorphic.vcf.gz 352411642 SNP_biallelic 3059226 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 36496777 INDEL_biallelic 188275 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_SNP_biallelic.no_monomorphic.vcf.gz 183702888 SNP_biallelic 1946184 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 21285272 INDEL_biallelic 128032 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 4134183 SNP_multiallelic 48782 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1959560 INDEL_multiallelic 7388 503 hg38 1 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 3613213 SNP_multiallelic 48805 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1612202 INDEL_multiallelic 7393 347 hg38 1 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 4033340 SNP_multiallelic 48782 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1879459 INDEL_multiallelic 7377 504 hg38 1 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 6017805 SNP_multiallelic 48830 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2798648 INDEL_multiallelic 7408 661 hg38 1 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 4191443 SNP_multiallelic 48796 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/1/1_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1974856 INDEL_multiallelic 7393 489 hg38 1 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 1013686 INDEL_multiallelic 8017 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 92287822 SNP_biallelic 1858525 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 11854253 INDEL_biallelic 164736 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1903347 SNP_multiallelic 26427 96 hg38 2 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1665481 SNP_multiallelic 26417 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 66607059 SNP_biallelic 1368810 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 72411646 SNP_biallelic 1657875 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 9696781 INDEL_biallelic 153729 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 863640 INDEL_multiallelic 8011 61 hg38 2 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 55722105 SNP_biallelic 1173569 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 7912081 INDEL_biallelic 109654 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1658369 SNP_multiallelic 26394 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 898683 INDEL_multiallelic 7991 86 hg38 2 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 45661314 SNP_biallelic 944158 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 6938144 INDEL_biallelic 93239 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1632910 SNP_multiallelic 26383 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 887625 INDEL_multiallelic 7982 93 hg38 2 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 9408315 INDEL_biallelic 131027 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 53704385 SNP_biallelic 1066623 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 7977300 INDEL_biallelic 104673 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1693202 SNP_multiallelic 26394 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 931511 INDEL_multiallelic 7992 99 hg38 2 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 50119350 SNP_biallelic 1019311 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 7374258 INDEL_biallelic 96151 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1676085 SNP_multiallelic 26387 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 923079 INDEL_multiallelic 7986 103 hg38 2 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 48931584 SNP_biallelic 989365 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 7375091 INDEL_biallelic 96382 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1676869 SNP_multiallelic 26386 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 924979 INDEL_multiallelic 7987 105 hg38 2 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1728930 SNP_multiallelic 26409 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 942722 INDEL_multiallelic 8009 94 hg38 2 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1724469 SNP_multiallelic 26393 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 86180925 SNP_biallelic 1691249 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 11478888 INDEL_biallelic 155199 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1917605 SNP_multiallelic 26436 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 1025537 INDEL_multiallelic 8014 99 hg38 2 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 956264 INDEL_multiallelic 7991 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 48736419 SNP_biallelic 943591 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 7722915 INDEL_biallelic 100906 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1686334 SNP_multiallelic 26388 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 926006 INDEL_multiallelic 7988 99 hg38 2 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 50116958 SNP_biallelic 1008446 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 7637005 INDEL_biallelic 102747 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1662503 SNP_multiallelic 26392 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 904236 INDEL_multiallelic 7987 91 hg38 2 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 56461339 SNP_biallelic 1107246 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 8306956 INDEL_biallelic 107741 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1726643 SNP_multiallelic 26394 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 954240 INDEL_multiallelic 7991 103 hg38 2 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 95831392 SNP_biallelic 1819365 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 12304755 INDEL_biallelic 158088 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 2004457 SNP_multiallelic 26423 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 1089073 INDEL_multiallelic 8012 113 hg38 2 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 59727960 SNP_biallelic 1169197 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 8661593 INDEL_biallelic 112206 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1743218 SNP_multiallelic 26393 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 965389 INDEL_multiallelic 7995 107 hg38 2 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 58580537 SNP_biallelic 1173260 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 8399918 INDEL_biallelic 109550 102 hg38 2 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 47492818 SNP_biallelic 949955 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 7370707 INDEL_biallelic 95624 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1675114 SNP_multiallelic 26389 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 926634 INDEL_multiallelic 7988 104 hg38 2 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 10352787 INDEL_biallelic 140703 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 50049906 SNP_biallelic 1032186 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 7346452 INDEL_biallelic 97231 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1660981 SNP_multiallelic 26385 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 912081 INDEL_multiallelic 7982 99 hg38 2 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1800971 SNP_multiallelic 26412 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 91575384 SNP_biallelic 1823451 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 11625989 INDEL_biallelic 157200 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1917480 SNP_multiallelic 26425 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 1025063 INDEL_multiallelic 8012 99 hg38 2 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 988774 INDEL_multiallelic 8006 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 83403566 SNP_biallelic 1732649 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 10847362 INDEL_biallelic 155207 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1833572 SNP_multiallelic 26421 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 964546 INDEL_multiallelic 8014 85 hg38 2 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 48486422 SNP_biallelic 1109216 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 7289116 INDEL_biallelic 112575 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1540491 SNP_multiallelic 26403 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 817906 INDEL_multiallelic 8003 64 hg38 2 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 51329689 SNP_biallelic 1104814 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 7595125 INDEL_biallelic 109206 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1605095 SNP_multiallelic 26393 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 870023 INDEL_multiallelic 7995 85 hg38 2 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 57609629 SNP_biallelic 1175729 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 8304294 INDEL_biallelic 111296 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1700905 SNP_multiallelic 26393 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 935554 INDEL_multiallelic 7993 96 hg38 2 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 75120142 SNP_biallelic 1499756 104 hg38 2 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 58683940 SNP_biallelic 1175728 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 8417271 INDEL_biallelic 109646 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1725504 SNP_multiallelic 26393 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 956844 INDEL_multiallelic 7993 102 hg38 2 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 58486470 SNP_biallelic 1141813 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 8432836 INDEL_biallelic 107798 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1737398 SNP_multiallelic 26392 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 965128 INDEL_multiallelic 7993 107 hg38 2 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 91297464 SNP_biallelic 1744505 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 12040396 INDEL_biallelic 158659 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1975217 SNP_multiallelic 26436 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/pop/2_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 1062079 INDEL_multiallelic 8012 108 hg38 2 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_SNP_biallelic.no_monomorphic.vcf.gz 188697603 SNP_biallelic 1899705 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 22343911 INDEL_biallelic 135339 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_SNP_biallelic.no_monomorphic.vcf.gz 170190439 SNP_biallelic 2224643 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 20189463 INDEL_biallelic 168781 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_SNP_biallelic.no_monomorphic.vcf.gz 174983382 SNP_biallelic 1893692 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 19945692 INDEL_biallelic 120255 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_SNP_biallelic.no_monomorphic.vcf.gz 384570854 SNP_biallelic 3353895 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 38922051 INDEL_biallelic 204341 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_SNP_biallelic.no_monomorphic.vcf.gz 199268662 SNP_biallelic 2130613 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 22380026 INDEL_biallelic 137399 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 3269188 SNP_multiallelic 26417 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 2132171 INDEL_multiallelic 8004 503 hg38 2 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2817712 SNP_multiallelic 26443 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1752153 INDEL_multiallelic 8016 347 hg38 2 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 3111235 SNP_multiallelic 26408 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2034780 INDEL_multiallelic 7998 504 hg38 2 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4950109 SNP_multiallelic 26465 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 3059755 INDEL_multiallelic 8021 661 hg38 2 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 3272278 SNP_multiallelic 26419 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/2/2_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 2136561 INDEL_multiallelic 8001 489 hg38 2 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 866357 INDEL_multiallelic 6859 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 76940479 SNP_biallelic 1549844 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9973214 INDEL_biallelic 138864 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1621486 SNP_multiallelic 22159 96 hg38 3 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 738987 INDEL_multiallelic 6859 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 56167870 SNP_biallelic 1156870 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 60248217 SNP_biallelic 1381998 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 8160894 INDEL_biallelic 129826 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1417400 SNP_multiallelic 22158 61 hg38 3 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 46771869 SNP_biallelic 985206 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6669976 INDEL_biallelic 92646 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1415444 SNP_multiallelic 22122 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 772009 INDEL_multiallelic 6848 86 hg38 3 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 38934188 SNP_biallelic 805869 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5930248 INDEL_biallelic 79945 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1398183 SNP_multiallelic 22126 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 765392 INDEL_multiallelic 6839 93 hg38 3 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7967957 INDEL_biallelic 111410 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 44853401 SNP_biallelic 893711 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6685468 INDEL_biallelic 88002 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1440806 SNP_multiallelic 22124 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 800839 INDEL_multiallelic 6845 99 hg38 3 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 42653017 SNP_biallelic 867549 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6316255 INDEL_biallelic 82763 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1433408 SNP_multiallelic 22119 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 793561 INDEL_multiallelic 6839 103 hg38 3 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 41409403 SNP_biallelic 837738 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6278605 INDEL_biallelic 82293 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1434570 SNP_multiallelic 22125 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 794104 INDEL_multiallelic 6839 105 hg38 3 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1473685 SNP_multiallelic 22142 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 810051 INDEL_multiallelic 6857 94 hg38 3 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1476715 SNP_multiallelic 22123 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 71956698 SNP_biallelic 1414105 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 9680675 INDEL_biallelic 131241 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1633327 SNP_multiallelic 22161 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 876698 INDEL_multiallelic 6854 99 hg38 3 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 820977 INDEL_multiallelic 6850 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 40608574 SNP_biallelic 789227 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6463230 INDEL_biallelic 84658 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1434057 SNP_multiallelic 22118 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 796496 INDEL_multiallelic 6841 99 hg38 3 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 41873508 SNP_biallelic 846099 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6386202 INDEL_biallelic 86150 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1411594 SNP_multiallelic 22118 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 776537 INDEL_multiallelic 6844 91 hg38 3 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 47391413 SNP_biallelic 929918 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6989643 INDEL_biallelic 90960 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1475973 SNP_multiallelic 22128 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 818165 INDEL_multiallelic 6847 103 hg38 3 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 80179288 SNP_biallelic 1522121 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10398726 INDEL_biallelic 133869 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1710010 SNP_multiallelic 22157 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 931757 INDEL_multiallelic 6859 113 hg38 3 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 50153278 SNP_biallelic 985010 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7294203 INDEL_biallelic 95070 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1485646 SNP_multiallelic 22129 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 830678 INDEL_multiallelic 6848 107 hg38 3 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 49296274 SNP_biallelic 987545 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7094626 INDEL_biallelic 92750 102 hg38 3 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 40340423 SNP_biallelic 808330 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6296847 INDEL_biallelic 82000 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1434700 SNP_multiallelic 22122 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 797882 INDEL_multiallelic 6844 104 hg38 3 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 8710235 INDEL_biallelic 118575 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 42391847 SNP_biallelic 874536 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6268978 INDEL_biallelic 83219 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1420790 SNP_multiallelic 22120 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 785384 INDEL_multiallelic 6842 99 hg38 3 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1536506 SNP_multiallelic 22154 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 76773864 SNP_biallelic 1530299 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 9804079 INDEL_biallelic 132967 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1636663 SNP_multiallelic 22164 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 877493 INDEL_multiallelic 6858 99 hg38 3 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 849246 INDEL_multiallelic 6857 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 69585251 SNP_biallelic 1447519 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9155079 INDEL_biallelic 131417 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1560848 SNP_multiallelic 22155 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 823860 INDEL_multiallelic 6856 85 hg38 3 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 40569226 SNP_biallelic 929868 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6125697 INDEL_biallelic 94754 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1310382 SNP_multiallelic 22128 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 701171 INDEL_multiallelic 6850 64 hg38 3 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 44798925 SNP_biallelic 967331 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6586933 INDEL_biallelic 95301 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1374737 SNP_multiallelic 22128 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 750087 INDEL_multiallelic 6856 85 hg38 3 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 48542109 SNP_biallelic 991636 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7010265 INDEL_biallelic 94190 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1453689 SNP_multiallelic 22126 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 803580 INDEL_multiallelic 6852 96 hg38 3 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 62779092 SNP_biallelic 1253646 104 hg38 3 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 49338330 SNP_biallelic 988798 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7101511 INDEL_biallelic 92765 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1476801 SNP_multiallelic 22135 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 822575 INDEL_multiallelic 6857 102 hg38 3 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 48789175 SNP_biallelic 956707 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7059668 INDEL_biallelic 90793 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1476475 SNP_multiallelic 22127 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 827762 INDEL_multiallelic 6848 107 hg38 3 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 76514210 SNP_biallelic 1465201 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10186253 INDEL_biallelic 134788 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1682761 SNP_multiallelic 22162 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/pop/3_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 908771 INDEL_multiallelic 6860 108 hg38 3 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_SNP_biallelic.no_monomorphic.vcf.gz 158823318 SNP_biallelic 1588458 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 18840563 INDEL_biallelic 114593 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_SNP_biallelic.no_monomorphic.vcf.gz 143846570 SNP_biallelic 1863519 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 17147341 INDEL_biallelic 143022 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_SNP_biallelic.no_monomorphic.vcf.gz 148507561 SNP_biallelic 1576456 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 17051638 INDEL_biallelic 102305 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_SNP_biallelic.no_monomorphic.vcf.gz 322010409 SNP_biallelic 2766747 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 32889090 INDEL_biallelic 171413 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_SNP_biallelic.no_monomorphic.vcf.gz 167963814 SNP_biallelic 1770747 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 18927313 INDEL_biallelic 115684 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2804597 SNP_multiallelic 22152 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1841846 INDEL_multiallelic 6857 503 hg38 3 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2424412 SNP_multiallelic 22178 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1513469 INDEL_multiallelic 6865 347 hg38 3 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2698204 SNP_multiallelic 22152 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1763031 INDEL_multiallelic 6853 504 hg38 3 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4256013 SNP_multiallelic 22198 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2621535 INDEL_multiallelic 6867 661 hg38 3 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2833540 SNP_multiallelic 22154 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/3/3_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1844768 INDEL_multiallelic 6864 489 hg38 3 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 913745 INDEL_multiallelic 7240 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 77661833 SNP_biallelic 1578589 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 10158047 INDEL_biallelic 143091 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1647242 SNP_multiallelic 22475 96 hg38 4 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1443297 SNP_multiallelic 22469 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 55653329 SNP_biallelic 1156837 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 60770720 SNP_biallelic 1406940 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 8308034 INDEL_biallelic 133258 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 778257 INDEL_multiallelic 7238 61 hg38 4 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 47092771 SNP_biallelic 1002134 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6794657 INDEL_biallelic 95444 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1445295 SNP_multiallelic 22449 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 813597 INDEL_multiallelic 7228 86 hg38 4 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 39031500 SNP_biallelic 814124 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5992310 INDEL_biallelic 81463 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1427711 SNP_multiallelic 22446 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 807197 INDEL_multiallelic 7216 93 hg38 4 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7941582 INDEL_biallelic 111915 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 45408172 SNP_biallelic 914735 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6782977 INDEL_biallelic 90416 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1472229 SNP_multiallelic 22453 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 840189 INDEL_multiallelic 7223 99 hg38 4 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 42681168 SNP_biallelic 873939 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 6356471 INDEL_biallelic 83723 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1464205 SNP_multiallelic 22451 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 838504 INDEL_multiallelic 7226 103 hg38 4 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 41718974 SNP_biallelic 850102 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 6356795 INDEL_biallelic 83821 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1466047 SNP_multiallelic 22450 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 839461 INDEL_multiallelic 7224 105 hg38 4 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1500558 SNP_multiallelic 22459 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 848845 INDEL_multiallelic 7230 94 hg38 4 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1509057 SNP_multiallelic 22450 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 72920107 SNP_biallelic 1447813 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 9873383 INDEL_biallelic 135385 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1662390 SNP_multiallelic 22478 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 924097 INDEL_multiallelic 7231 99 hg38 4 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 866594 INDEL_multiallelic 7227 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 41427628 SNP_biallelic 815973 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6582253 INDEL_biallelic 87369 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1467220 SNP_multiallelic 22449 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 836831 INDEL_multiallelic 7219 99 hg38 4 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 42209747 SNP_biallelic 861949 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 6475764 INDEL_biallelic 88343 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1444780 SNP_multiallelic 22452 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 815958 INDEL_multiallelic 7223 91 hg38 4 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 47772389 SNP_biallelic 946604 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 7111685 INDEL_biallelic 93570 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1508491 SNP_multiallelic 22452 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 863925 INDEL_multiallelic 7228 103 hg38 4 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 80831389 SNP_biallelic 1548007 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 10556888 INDEL_biallelic 137430 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1736437 SNP_multiallelic 22481 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 981697 INDEL_multiallelic 7242 113 hg38 4 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 50800326 SNP_biallelic 1006736 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 7394948 INDEL_biallelic 97315 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1520723 SNP_multiallelic 22455 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 872594 INDEL_multiallelic 7225 107 hg38 4 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 49804166 SNP_biallelic 1006670 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 7225881 INDEL_biallelic 95488 102 hg38 4 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 40202825 SNP_biallelic 811697 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 6311366 INDEL_biallelic 82874 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1462693 SNP_multiallelic 22448 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 839625 INDEL_multiallelic 7221 104 hg38 4 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 8840948 INDEL_biallelic 121790 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 42558552 SNP_biallelic 883731 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 6343270 INDEL_biallelic 84820 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1451134 SNP_multiallelic 22447 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 827240 INDEL_multiallelic 7222 99 hg38 4 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1567591 SNP_multiallelic 22466 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 77028166 SNP_biallelic 1549292 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 9968327 INDEL_biallelic 136739 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1660501 SNP_multiallelic 22479 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 923489 INDEL_multiallelic 7236 99 hg38 4 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 894925 INDEL_multiallelic 7237 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 70484216 SNP_biallelic 1480230 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 9319844 INDEL_biallelic 135034 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1589384 SNP_multiallelic 22479 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 868105 INDEL_multiallelic 7238 85 hg38 4 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 40484827 SNP_biallelic 939938 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 6164911 INDEL_biallelic 96293 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1334823 SNP_multiallelic 22450 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 735252 INDEL_multiallelic 7226 64 hg38 4 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 44365767 SNP_biallelic 965647 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 6588468 INDEL_biallelic 96010 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1400448 SNP_multiallelic 22452 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 786449 INDEL_multiallelic 7229 85 hg38 4 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 48943518 SNP_biallelic 1008001 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 7118823 INDEL_biallelic 96545 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1484902 SNP_multiallelic 22452 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 846796 INDEL_multiallelic 7228 96 hg38 4 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 63436883 SNP_biallelic 1280544 104 hg38 4 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 49955270 SNP_biallelic 1011687 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 7233029 INDEL_biallelic 95524 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1510225 SNP_multiallelic 22451 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 867028 INDEL_multiallelic 7228 102 hg38 4 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 49408119 SNP_biallelic 976844 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 7183449 INDEL_biallelic 93399 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1514190 SNP_multiallelic 22458 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 870878 INDEL_multiallelic 7224 107 hg38 4 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 77029758 SNP_biallelic 1486532 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 10342702 INDEL_biallelic 138237 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1713379 SNP_multiallelic 22479 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/pop/4_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 956352 INDEL_multiallelic 7235 108 hg38 4 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_SNP_biallelic.no_monomorphic.vcf.gz 159871893 SNP_biallelic 1587634 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 19025832 INDEL_biallelic 116443 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_SNP_biallelic.no_monomorphic.vcf.gz 143392369 SNP_biallelic 1856270 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 17212911 INDEL_biallelic 144856 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_SNP_biallelic.no_monomorphic.vcf.gz 148350280 SNP_biallelic 1553683 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 17216095 INDEL_biallelic 103684 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_SNP_biallelic.no_monomorphic.vcf.gz 325036366 SNP_biallelic 2765713 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 33466859 INDEL_biallelic 175875 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_SNP_biallelic.no_monomorphic.vcf.gz 168912014 SNP_biallelic 1765724 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 19224068 INDEL_biallelic 118672 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2881194 SNP_multiallelic 22477 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1938186 INDEL_multiallelic 7232 503 hg38 4 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2472346 SNP_multiallelic 22486 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1590402 INDEL_multiallelic 7245 347 hg38 4 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2764357 SNP_multiallelic 22476 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1868312 INDEL_multiallelic 7240 504 hg38 4 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4327696 SNP_multiallelic 22513 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2774923 INDEL_multiallelic 7251 661 hg38 4 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2906334 SNP_multiallelic 22471 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/4/4_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1952403 INDEL_multiallelic 7236 489 hg38 4 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 808236 INDEL_multiallelic 6399 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 69685143 SNP_biallelic 1412848 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9157149 INDEL_biallelic 128123 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1488738 SNP_multiallelic 20555 96 hg38 5 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 687821 INDEL_multiallelic 6399 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 50224011 SNP_biallelic 1041845 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 54263561 SNP_biallelic 1250879 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7476284 INDEL_biallelic 119275 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1303589 SNP_multiallelic 20556 61 hg38 5 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 40884250 SNP_biallelic 866326 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5994906 INDEL_biallelic 83280 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1294128 SNP_multiallelic 20542 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 714390 INDEL_multiallelic 6388 86 hg38 5 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 33514804 SNP_biallelic 699178 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5254559 INDEL_biallelic 70849 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1272147 SNP_multiallelic 20532 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 704526 INDEL_multiallelic 6374 93 hg38 5 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7244261 INDEL_biallelic 101662 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 39798918 SNP_biallelic 795042 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6077314 INDEL_biallelic 80036 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1323057 SNP_multiallelic 20539 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 742778 INDEL_multiallelic 6384 99 hg38 5 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 36687169 SNP_biallelic 752836 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5592442 INDEL_biallelic 73153 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1305789 SNP_multiallelic 20526 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 731810 INDEL_multiallelic 6371 103 hg38 5 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 35883134 SNP_biallelic 732315 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5586006 INDEL_biallelic 73248 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1305021 SNP_multiallelic 20527 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 732439 INDEL_multiallelic 6370 105 hg38 5 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1350864 SNP_multiallelic 20546 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 750265 INDEL_multiallelic 6396 94 hg38 5 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1350263 SNP_multiallelic 20543 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 65265029 SNP_biallelic 1289637 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8888408 INDEL_biallelic 120975 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1502877 SNP_multiallelic 20559 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 819025 INDEL_multiallelic 6400 99 hg38 5 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 760686 INDEL_multiallelic 6391 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 36120491 SNP_biallelic 705130 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5866778 INDEL_biallelic 76822 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1316845 SNP_multiallelic 20533 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 738890 INDEL_multiallelic 6383 99 hg38 5 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 37200468 SNP_biallelic 754139 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5813662 INDEL_biallelic 78477 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1297450 SNP_multiallelic 20532 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 721147 INDEL_multiallelic 6385 91 hg38 5 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 41774737 SNP_biallelic 824220 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6328154 INDEL_biallelic 82335 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1347598 SNP_multiallelic 20538 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 758548 INDEL_multiallelic 6385 103 hg38 5 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 72346118 SNP_biallelic 1380628 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9506930 INDEL_biallelic 122895 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1569570 SNP_multiallelic 20558 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 870050 INDEL_multiallelic 6405 113 hg38 5 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 44622532 SNP_biallelic 879962 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6636759 INDEL_biallelic 86569 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1360716 SNP_multiallelic 20539 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 768756 INDEL_multiallelic 6386 107 hg38 5 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 43400611 SNP_biallelic 874195 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6411299 INDEL_biallelic 83774 102 hg38 5 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 34713843 SNP_biallelic 701200 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5581946 INDEL_biallelic 72716 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1305407 SNP_multiallelic 20529 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 734015 INDEL_multiallelic 6368 104 hg38 5 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7899662 INDEL_biallelic 107947 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 36703659 SNP_biallelic 764152 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5568700 INDEL_biallelic 74030 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1293513 SNP_multiallelic 20525 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 723080 INDEL_multiallelic 6378 99 hg38 5 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1405477 SNP_multiallelic 20554 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 68972440 SNP_biallelic 1382197 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8988309 INDEL_biallelic 122482 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1501594 SNP_multiallelic 20556 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 818265 INDEL_multiallelic 6403 99 hg38 5 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 786744 INDEL_multiallelic 6398 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 62784269 SNP_biallelic 1312466 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8370144 INDEL_biallelic 120535 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1436424 SNP_multiallelic 20556 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 769007 INDEL_multiallelic 6405 85 hg38 5 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 36334556 SNP_biallelic 838122 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5602081 INDEL_biallelic 86966 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1201447 SNP_multiallelic 20539 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 649644 INDEL_multiallelic 6394 64 hg38 5 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 36978195 SNP_biallelic 800643 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5663897 INDEL_biallelic 81381 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1247191 SNP_multiallelic 20533 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 687535 INDEL_multiallelic 6385 85 hg38 5 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 42454314 SNP_biallelic 870580 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6301209 INDEL_biallelic 84483 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1328395 SNP_multiallelic 20538 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 743769 INDEL_multiallelic 6389 96 hg38 5 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 55549215 SNP_biallelic 1115691 104 hg38 5 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 43429611 SNP_biallelic 875748 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6430025 INDEL_biallelic 84113 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1349271 SNP_multiallelic 20539 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 760076 INDEL_multiallelic 6386 102 hg38 5 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 43177605 SNP_biallelic 847954 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6418828 INDEL_biallelic 82450 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1354569 SNP_multiallelic 20535 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 768018 INDEL_multiallelic 6383 107 hg38 5 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 68988064 SNP_biallelic 1325924 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9317195 INDEL_biallelic 123615 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1548624 SNP_multiallelic 20557 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/pop/5_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 848980 INDEL_multiallelic 6400 108 hg38 5 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_SNP_biallelic.no_monomorphic.vcf.gz 141084800 SNP_biallelic 1416764 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17127672 INDEL_biallelic 103895 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_SNP_biallelic.no_monomorphic.vcf.gz 127245843 SNP_biallelic 1666269 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15513956 INDEL_biallelic 130272 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_SNP_biallelic.no_monomorphic.vcf.gz 129585164 SNP_biallelic 1388779 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 15255694 INDEL_biallelic 91220 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_SNP_biallelic.no_monomorphic.vcf.gz 290285480 SNP_biallelic 2514693 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 30109066 INDEL_biallelic 158240 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_SNP_biallelic.no_monomorphic.vcf.gz 148060053 SNP_biallelic 1570857 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 17138991 INDEL_biallelic 104768 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2565897 SNP_multiallelic 20555 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1708931 INDEL_multiallelic 6393 503 hg38 5 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2205376 SNP_multiallelic 20566 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1396543 INDEL_multiallelic 6407 347 hg38 5 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2432969 SNP_multiallelic 20546 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1618619 INDEL_multiallelic 6387 504 hg38 5 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3909056 SNP_multiallelic 20587 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2455077 INDEL_multiallelic 6409 661 hg38 5 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2573708 SNP_multiallelic 20563 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/5/5_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1705987 INDEL_multiallelic 6395 489 hg38 5 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 826192 INDEL_multiallelic 6460 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 68450266 SNP_biallelic 1385759 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 9099546 INDEL_biallelic 127044 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1534116 SNP_multiallelic 21305 96 hg38 6 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1342343 SNP_multiallelic 21293 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 50709961 SNP_biallelic 1044643 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 54143609 SNP_biallelic 1251666 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 7484945 INDEL_biallelic 119264 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 703687 INDEL_multiallelic 6460 61 hg38 6 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 42773844 SNP_biallelic 904689 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 6202820 INDEL_biallelic 86303 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1359560 SNP_multiallelic 21268 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 737901 INDEL_multiallelic 6451 86 hg38 6 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 35472113 SNP_biallelic 737388 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 5492355 INDEL_biallelic 74157 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1339645 SNP_multiallelic 21259 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 733473 INDEL_multiallelic 6440 93 hg38 6 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 7295600 INDEL_biallelic 101727 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 41296856 SNP_biallelic 823577 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 6201425 INDEL_biallelic 81628 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1386811 SNP_multiallelic 21267 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 765992 INDEL_multiallelic 6446 99 hg38 6 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 39684451 SNP_biallelic 807010 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5929968 INDEL_biallelic 77823 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1385382 SNP_multiallelic 21260 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 763996 INDEL_multiallelic 6447 103 hg38 6 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 38131870 SNP_biallelic 773300 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5837321 INDEL_biallelic 76635 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1378639 SNP_multiallelic 21259 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 763747 INDEL_multiallelic 6444 105 hg38 6 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1412977 SNP_multiallelic 21280 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 773235 INDEL_multiallelic 6455 94 hg38 6 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1420173 SNP_multiallelic 21267 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 63910632 SNP_biallelic 1263729 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 8797456 INDEL_biallelic 119496 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1540720 SNP_multiallelic 21299 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 834837 INDEL_multiallelic 6452 99 hg38 6 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 786003 INDEL_multiallelic 6449 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 37951623 SNP_biallelic 742425 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 6041636 INDEL_biallelic 79406 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1379314 SNP_multiallelic 21263 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 762458 INDEL_multiallelic 6446 99 hg38 6 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 38798735 SNP_biallelic 785888 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5968808 INDEL_biallelic 80673 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1360375 SNP_multiallelic 21258 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 742637 INDEL_multiallelic 6444 91 hg38 6 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 43455640 SNP_biallelic 855937 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 6501838 INDEL_biallelic 84885 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1419051 SNP_multiallelic 21267 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 783244 INDEL_multiallelic 6443 103 hg38 6 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 71495286 SNP_biallelic 1364308 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 9480445 INDEL_biallelic 122504 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1619657 SNP_multiallelic 21306 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 887785 INDEL_multiallelic 6459 113 hg38 6 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 46250856 SNP_biallelic 906935 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 6792164 INDEL_biallelic 88350 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1431403 SNP_multiallelic 21264 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 795297 INDEL_multiallelic 6449 107 hg38 6 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 45014658 SNP_biallelic 900880 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 6600720 INDEL_biallelic 86399 102 hg38 6 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 37107642 SNP_biallelic 743582 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5827924 INDEL_biallelic 75876 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1381038 SNP_multiallelic 21257 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 763755 INDEL_multiallelic 6440 104 hg38 6 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7903339 INDEL_biallelic 107058 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 39389744 SNP_biallelic 813003 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5864365 INDEL_biallelic 77997 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1369392 SNP_multiallelic 21259 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 753985 INDEL_multiallelic 6447 99 hg38 6 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1468475 SNP_multiallelic 21282 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 68093096 SNP_biallelic 1364218 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 8915175 INDEL_biallelic 121130 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1542714 SNP_multiallelic 21302 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 835194 INDEL_multiallelic 6456 99 hg38 6 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 809690 INDEL_multiallelic 6456 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 61954358 SNP_biallelic 1295852 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 8332066 INDEL_biallelic 119681 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1474926 SNP_multiallelic 21299 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 783599 INDEL_multiallelic 6455 85 hg38 6 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 37407328 SNP_biallelic 863897 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5717246 INDEL_biallelic 88651 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1254777 SNP_multiallelic 21269 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 669882 INDEL_multiallelic 6454 64 hg38 6 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 39837981 SNP_biallelic 859974 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5974417 INDEL_biallelic 86030 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1313296 SNP_multiallelic 21266 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 713381 INDEL_multiallelic 6448 85 hg38 6 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 44030134 SNP_biallelic 899852 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 6494683 INDEL_biallelic 87230 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1393842 SNP_multiallelic 21267 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 767642 INDEL_multiallelic 6450 96 hg38 6 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 55763774 SNP_biallelic 1111557 104 hg38 6 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 45320221 SNP_biallelic 909396 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 6629869 INDEL_biallelic 86823 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1420409 SNP_multiallelic 21267 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 786023 INDEL_multiallelic 6446 102 hg38 6 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 45385592 SNP_biallelic 889627 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 6618337 INDEL_biallelic 85193 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1424973 SNP_multiallelic 21267 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 793519 INDEL_multiallelic 6448 107 hg38 6 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 67560067 SNP_biallelic 1298116 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 9218228 INDEL_biallelic 122089 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1589548 SNP_multiallelic 21298 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/pop/6_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 863803 INDEL_multiallelic 6454 108 hg38 6 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_SNP_biallelic.no_monomorphic.vcf.gz 146481567 SNP_biallelic 1422389 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 17590093 INDEL_biallelic 105588 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_SNP_biallelic.no_monomorphic.vcf.gz 128730219 SNP_biallelic 1637190 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 15650047 INDEL_biallelic 129244 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_SNP_biallelic.no_monomorphic.vcf.gz 137517242 SNP_biallelic 1418658 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 16018831 INDEL_biallelic 95468 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_SNP_biallelic.no_monomorphic.vcf.gz 286999122 SNP_biallelic 2434713 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 29950267 INDEL_biallelic 156217 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_SNP_biallelic.no_monomorphic.vcf.gz 152829210 SNP_biallelic 1566580 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 17639671 INDEL_biallelic 106961 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2764112 SNP_multiallelic 21289 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1777494 INDEL_multiallelic 6454 503 hg38 6 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2347165 SNP_multiallelic 21316 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1448641 INDEL_multiallelic 6461 347 hg38 6 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2659277 SNP_multiallelic 21284 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1713428 INDEL_multiallelic 6456 504 hg38 6 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4034485 SNP_multiallelic 21341 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2506218 INDEL_multiallelic 6464 661 hg38 6 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2778185 SNP_multiallelic 21293 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/6/6_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1778152 INDEL_multiallelic 6458 489 hg38 6 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 690783 INDEL_multiallelic 5478 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 63829859 SNP_biallelic 1281777 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 7988760 INDEL_biallelic 110800 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1379958 SNP_multiallelic 19759 96 hg38 7 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1210127 SNP_multiallelic 19743 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 46175058 SNP_biallelic 945267 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 50519792 SNP_biallelic 1156171 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 6588318 INDEL_biallelic 104561 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 589230 INDEL_multiallelic 5473 61 hg38 7 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 38530829 SNP_biallelic 805023 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5369524 INDEL_biallelic 73866 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1204527 SNP_multiallelic 19696 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 613396 INDEL_multiallelic 5454 86 hg38 7 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 32003149 SNP_biallelic 655021 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4785266 INDEL_biallelic 63701 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1189200 SNP_multiallelic 19688 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 610129 INDEL_multiallelic 5445 93 hg38 7 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 6373653 INDEL_biallelic 88279 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 37261927 SNP_biallelic 736741 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 5429754 INDEL_biallelic 70926 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1229023 SNP_multiallelic 19691 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 634112 INDEL_multiallelic 5443 99 hg38 7 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 35174736 SNP_biallelic 706884 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 5099729 INDEL_biallelic 65932 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1220080 SNP_multiallelic 19690 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 632977 INDEL_multiallelic 5448 103 hg38 7 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 34169823 SNP_biallelic 682811 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 5067822 INDEL_biallelic 65425 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1220794 SNP_multiallelic 19695 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 634711 INDEL_multiallelic 5446 105 hg38 7 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1254775 SNP_multiallelic 19725 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 642973 INDEL_multiallelic 5464 94 hg38 7 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1257126 SNP_multiallelic 19698 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 60010181 SNP_biallelic 1177530 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 7766071 INDEL_biallelic 104992 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1390038 SNP_multiallelic 19750 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 698481 INDEL_multiallelic 5473 99 hg38 7 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 653092 INDEL_multiallelic 5454 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 34073591 SNP_biallelic 656731 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 5273834 INDEL_biallelic 68434 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1223474 SNP_multiallelic 19690 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 632665 INDEL_multiallelic 5449 99 hg38 7 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 34638789 SNP_biallelic 693985 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 5183650 INDEL_biallelic 69337 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1204742 SNP_multiallelic 19695 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 614984 INDEL_multiallelic 5444 91 hg38 7 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 39326902 SNP_biallelic 765860 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5665609 INDEL_biallelic 73007 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1256383 SNP_multiallelic 19700 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 650161 INDEL_multiallelic 5451 103 hg38 7 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 66626670 SNP_biallelic 1260435 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 8334322 INDEL_biallelic 106948 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1452786 SNP_multiallelic 19755 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 742498 INDEL_multiallelic 5476 113 hg38 7 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 42056188 SNP_biallelic 821150 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5955510 INDEL_biallelic 77057 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1266213 SNP_multiallelic 19704 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 658288 INDEL_multiallelic 5448 107 hg38 7 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 40853668 SNP_biallelic 811392 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5735247 INDEL_biallelic 74119 102 hg38 7 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 33179110 SNP_biallelic 656605 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 5063274 INDEL_biallelic 65037 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1220905 SNP_multiallelic 19697 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 635258 INDEL_multiallelic 5443 104 hg38 7 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 7020895 INDEL_biallelic 95151 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 34961664 SNP_biallelic 713207 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 5061029 INDEL_biallelic 66339 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1209658 SNP_multiallelic 19694 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 626091 INDEL_multiallelic 5446 99 hg38 7 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1307576 SNP_multiallelic 19729 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 63726879 SNP_biallelic 1267146 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7881624 INDEL_biallelic 106571 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1389973 SNP_multiallelic 19750 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 700239 INDEL_multiallelic 5476 99 hg38 7 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 674608 INDEL_multiallelic 5468 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 58332436 SNP_biallelic 1211063 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 7359844 INDEL_biallelic 105216 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1331548 SNP_multiallelic 19752 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 658156 INDEL_multiallelic 5476 85 hg38 7 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 34117562 SNP_biallelic 777126 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 5009889 INDEL_biallelic 77014 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1118613 SNP_multiallelic 19703 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 558910 INDEL_multiallelic 5451 64 hg38 7 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 35145360 SNP_biallelic 749694 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 5123394 INDEL_biallelic 72840 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1164774 SNP_multiallelic 19702 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 593277 INDEL_multiallelic 5452 85 hg38 7 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 39867535 SNP_biallelic 807256 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 5637398 INDEL_biallelic 74873 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1236109 SNP_multiallelic 19693 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 638809 INDEL_multiallelic 5455 96 hg38 7 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 52203502 SNP_biallelic 1039490 104 hg38 7 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 40809260 SNP_biallelic 810540 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5746247 INDEL_biallelic 74292 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1256373 SNP_multiallelic 19693 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 652838 INDEL_multiallelic 5454 102 hg38 7 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 40881795 SNP_biallelic 796315 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5778540 INDEL_biallelic 73696 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1261580 SNP_multiallelic 19697 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 657821 INDEL_multiallelic 5450 107 hg38 7 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 63473599 SNP_biallelic 1211069 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 8151302 INDEL_biallelic 107425 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1432689 SNP_multiallelic 19748 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/pop/7_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 723226 INDEL_multiallelic 5474 108 hg38 7 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_SNP_biallelic.no_monomorphic.vcf.gz 131744099 SNP_biallelic 1303847 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 15299529 INDEL_biallelic 91921 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_SNP_biallelic.no_monomorphic.vcf.gz 117898373 SNP_biallelic 1519248 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 13717729 INDEL_biallelic 113471 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_SNP_biallelic.no_monomorphic.vcf.gz 122246073 SNP_biallelic 1274678 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 13798973 INDEL_biallelic 81257 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_SNP_biallelic.no_monomorphic.vcf.gz 266094743 SNP_biallelic 2280834 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 26253149 INDEL_biallelic 136855 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_SNP_biallelic.no_monomorphic.vcf.gz 137767389 SNP_biallelic 1432947 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 15244226 INDEL_biallelic 91868 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2367011 SNP_multiallelic 19730 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1457693 INDEL_multiallelic 5467 503 hg38 7 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2042945 SNP_multiallelic 19763 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1200993 INDEL_multiallelic 5479 347 hg38 7 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2269190 SNP_multiallelic 19727 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1410577 INDEL_multiallelic 5464 504 hg38 7 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3574518 SNP_multiallelic 19798 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 2087380 INDEL_multiallelic 5495 661 hg38 7 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2382772 SNP_multiallelic 19727 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/7/7_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1463722 INDEL_multiallelic 5469 489 hg38 7 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 627714 INDEL_multiallelic 4955 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 61671030 SNP_biallelic 1247559 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 7110487 INDEL_biallelic 99195 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1416511 SNP_multiallelic 19873 96 hg38 8 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1235757 SNP_multiallelic 19863 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 43271649 SNP_biallelic 893010 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 47762986 SNP_biallelic 1098735 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5771904 INDEL_biallelic 91867 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 532918 INDEL_multiallelic 4954 61 hg38 8 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 36209657 SNP_biallelic 763037 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4627514 INDEL_biallelic 64018 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1232448 SNP_multiallelic 19834 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 553998 INDEL_multiallelic 4942 86 hg38 8 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 29572502 SNP_biallelic 611088 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4053036 INDEL_biallelic 54173 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1212750 SNP_multiallelic 19827 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 548677 INDEL_multiallelic 4936 93 hg38 8 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5528961 INDEL_biallelic 77300 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 34846535 SNP_biallelic 694469 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4654579 INDEL_biallelic 61199 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1253282 SNP_multiallelic 19830 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 573495 INDEL_multiallelic 4947 99 hg38 8 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 32493685 SNP_biallelic 661247 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4321543 INDEL_biallelic 56223 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1245595 SNP_multiallelic 19827 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 569787 INDEL_multiallelic 4939 103 hg38 8 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 31448933 SNP_biallelic 635641 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4288834 INDEL_biallelic 55772 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1245496 SNP_multiallelic 19828 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 569349 INDEL_multiallelic 4935 105 hg38 8 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1278567 SNP_multiallelic 19848 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 580202 INDEL_multiallelic 4950 94 hg38 8 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1286364 SNP_multiallelic 19834 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 57460786 SNP_biallelic 1133740 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6888485 INDEL_biallelic 93546 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1427243 SNP_multiallelic 19861 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 635230 INDEL_multiallelic 4955 99 hg38 8 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 589939 INDEL_multiallelic 4942 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 31776767 SNP_biallelic 618386 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4515411 INDEL_biallelic 59117 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1246455 SNP_multiallelic 19826 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 569918 INDEL_multiallelic 4942 99 hg38 8 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 32491444 SNP_biallelic 656685 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4448857 INDEL_biallelic 59918 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1229497 SNP_multiallelic 19824 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 554901 INDEL_multiallelic 4940 91 hg38 8 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 36855014 SNP_biallelic 724144 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4883854 INDEL_biallelic 63442 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1284019 SNP_multiallelic 19838 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 588872 INDEL_multiallelic 4941 103 hg38 8 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 64280773 SNP_biallelic 1223960 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7418569 INDEL_biallelic 95647 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1494122 SNP_multiallelic 19870 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 674539 INDEL_multiallelic 4956 113 hg38 8 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 38993389 SNP_biallelic 766988 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5076362 INDEL_biallelic 66091 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1289340 SNP_multiallelic 19834 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 591719 INDEL_multiallelic 4941 107 hg38 8 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 38485258 SNP_biallelic 771536 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4955696 INDEL_biallelic 64561 102 hg38 8 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 30639221 SNP_biallelic 612061 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4300181 INDEL_biallelic 55523 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1246546 SNP_multiallelic 19828 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 570696 INDEL_multiallelic 4931 104 hg38 8 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6205153 INDEL_biallelic 84723 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 32251137 SNP_biallelic 665637 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4281052 INDEL_biallelic 56418 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1233114 SNP_multiallelic 19835 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 563015 INDEL_multiallelic 4938 99 hg38 8 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1342274 SNP_multiallelic 19859 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 61508345 SNP_biallelic 1231699 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 7000765 INDEL_biallelic 95190 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1428971 SNP_multiallelic 19870 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 635569 INDEL_multiallelic 4956 99 hg38 8 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 612422 INDEL_multiallelic 4953 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 55677967 SNP_biallelic 1162036 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6520013 INDEL_biallelic 93592 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1365216 SNP_multiallelic 19860 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 596826 INDEL_multiallelic 4955 85 hg38 8 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 31342075 SNP_biallelic 720073 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4256961 INDEL_biallelic 65847 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1138332 SNP_multiallelic 19832 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 502241 INDEL_multiallelic 4945 64 hg38 8 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 33904408 SNP_biallelic 733000 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4499687 INDEL_biallelic 64932 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1192107 SNP_multiallelic 19836 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 536369 INDEL_multiallelic 4946 85 hg38 8 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 37604158 SNP_biallelic 767826 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4872021 INDEL_biallelic 65213 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1265057 SNP_multiallelic 19836 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 577481 INDEL_multiallelic 4948 96 hg38 8 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 50078252 SNP_biallelic 1003541 104 hg38 8 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 38481141 SNP_biallelic 770722 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4961565 INDEL_biallelic 64576 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1285843 SNP_multiallelic 19834 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 590004 INDEL_multiallelic 4941 102 hg38 8 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 38097881 SNP_biallelic 748159 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4933752 INDEL_biallelic 63365 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1285015 SNP_multiallelic 19837 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 592843 INDEL_multiallelic 4944 107 hg38 8 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 60403054 SNP_biallelic 1158853 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 7196431 INDEL_biallelic 95224 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1468935 SNP_multiallelic 19864 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/pop/8_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 658240 INDEL_multiallelic 4958 108 hg38 8 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_SNP_biallelic.no_monomorphic.vcf.gz 123041751 SNP_biallelic 1238596 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13061211 INDEL_biallelic 79577 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_SNP_biallelic.no_monomorphic.vcf.gz 111926658 SNP_biallelic 1461016 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11968610 INDEL_biallelic 100466 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_SNP_biallelic.no_monomorphic.vcf.gz 114134221 SNP_biallelic 1220013 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11762492 INDEL_biallelic 70202 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_SNP_biallelic.no_monomorphic.vcf.gz 255912022 SNP_biallelic 2219044 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 23246954 INDEL_biallelic 121867 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_SNP_biallelic.no_monomorphic.vcf.gz 130684395 SNP_biallelic 1382244 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13209863 INDEL_biallelic 80753 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2426652 SNP_multiallelic 19853 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1311441 INDEL_multiallelic 4952 503 hg38 8 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2101895 SNP_multiallelic 19877 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1084283 INDEL_multiallelic 4956 347 hg38 8 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2331923 SNP_multiallelic 19851 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1261110 INDEL_multiallelic 4946 504 hg38 8 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3715213 SNP_multiallelic 19897 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1905933 INDEL_multiallelic 4962 661 hg38 8 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2460468 SNP_multiallelic 19860 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/8/8_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1325007 INDEL_multiallelic 4953 489 hg38 8 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 493823 INDEL_multiallelic 3962 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 47535078 SNP_biallelic 948893 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5819697 INDEL_biallelic 80156 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1031668 SNP_multiallelic 14322 96 hg38 9 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 421041 INDEL_multiallelic 3962 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 34299193 SNP_biallelic 695683 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 37103561 SNP_biallelic 840873 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4749859 INDEL_biallelic 74650 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 901947 SNP_multiallelic 14313 61 hg38 9 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 29102085 SNP_biallelic 602961 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3967907 INDEL_biallelic 54084 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 905077 SNP_multiallelic 14303 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 440097 INDEL_multiallelic 3957 86 hg38 9 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 24354027 SNP_biallelic 494152 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3565180 INDEL_biallelic 46954 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 894495 SNP_multiallelic 14299 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 436406 INDEL_multiallelic 3946 93 hg38 9 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4644834 INDEL_biallelic 63826 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 27797732 SNP_biallelic 543697 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3957305 INDEL_biallelic 51035 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 921446 SNP_multiallelic 14298 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 454179 INDEL_multiallelic 3955 99 hg38 9 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 26650168 SNP_biallelic 531662 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3777591 INDEL_biallelic 48276 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 915794 SNP_multiallelic 14295 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 453855 INDEL_multiallelic 3952 103 hg38 9 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 25856638 SNP_biallelic 512724 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3759602 INDEL_biallelic 48084 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 916645 SNP_multiallelic 14300 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 454431 INDEL_multiallelic 3954 105 hg38 9 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 938818 SNP_multiallelic 14309 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 459190 INDEL_multiallelic 3955 94 hg38 9 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 946167 SNP_multiallelic 14307 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 44265372 SNP_biallelic 860633 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5624449 INDEL_biallelic 75286 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1039255 SNP_multiallelic 14321 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 499274 INDEL_multiallelic 3963 99 hg38 9 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 468857 INDEL_multiallelic 3958 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 25375139 SNP_biallelic 483709 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3848642 INDEL_biallelic 49344 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 918096 SNP_multiallelic 14293 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 452870 INDEL_multiallelic 3955 99 hg38 9 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 26051156 SNP_biallelic 516272 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3796872 INDEL_biallelic 50227 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 904032 SNP_multiallelic 14299 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 441406 INDEL_multiallelic 3958 91 hg38 9 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 29701525 SNP_biallelic 572311 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4194614 INDEL_biallelic 53537 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 945382 SNP_multiallelic 14304 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 467718 INDEL_multiallelic 3959 103 hg38 9 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 49453774 SNP_biallelic 929976 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6049542 INDEL_biallelic 76938 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1085928 SNP_multiallelic 14327 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 530393 INDEL_multiallelic 3964 113 hg38 9 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 31469588 SNP_biallelic 608431 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4349436 INDEL_biallelic 55734 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 949909 SNP_multiallelic 14304 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 470209 INDEL_multiallelic 3960 107 hg38 9 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 30867101 SNP_biallelic 607367 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4236234 INDEL_biallelic 54342 102 hg38 9 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 25217990 SNP_biallelic 494369 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3763908 INDEL_biallelic 47734 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 917042 SNP_multiallelic 14301 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 454419 INDEL_multiallelic 3955 104 hg38 9 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5094893 INDEL_biallelic 68304 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 26483481 SNP_biallelic 535682 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3753841 INDEL_biallelic 48799 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 908738 SNP_multiallelic 14301 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 448068 INDEL_multiallelic 3955 99 hg38 9 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 976921 SNP_multiallelic 14308 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 47305964 SNP_biallelic 934664 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5718378 INDEL_biallelic 76750 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1040612 SNP_multiallelic 14321 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 499171 INDEL_multiallelic 3962 99 hg38 9 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 481387 INDEL_multiallelic 3964 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 43448832 SNP_biallelic 896132 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 5354732 INDEL_biallelic 75961 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 994393 SNP_multiallelic 14322 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 469870 INDEL_multiallelic 3958 85 hg38 9 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 24627618 SNP_biallelic 555099 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3561145 INDEL_biallelic 54095 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 834742 SNP_multiallelic 14297 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 398495 INDEL_multiallelic 3956 64 hg38 9 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 27337078 SNP_biallelic 580634 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3858932 INDEL_biallelic 54717 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 875981 SNP_multiallelic 14295 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 427323 INDEL_multiallelic 3959 85 hg38 9 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 30212370 SNP_biallelic 605891 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4181402 INDEL_biallelic 55159 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 930474 SNP_multiallelic 14298 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 457958 INDEL_multiallelic 3959 96 hg38 9 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 38612464 SNP_biallelic 762399 104 hg38 9 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 30911320 SNP_biallelic 608613 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4244941 INDEL_biallelic 54425 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 945796 SNP_multiallelic 14301 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 469033 INDEL_multiallelic 3960 102 hg38 9 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 30608685 SNP_biallelic 590205 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4214984 INDEL_biallelic 53143 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 945797 SNP_multiallelic 14300 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 470024 INDEL_multiallelic 3960 107 hg38 9 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 47008865 SNP_biallelic 890670 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5911327 INDEL_biallelic 77163 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1070110 SNP_multiallelic 14317 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/pop/9_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 517802 INDEL_multiallelic 3967 108 hg38 9 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_SNP_biallelic.no_monomorphic.vcf.gz 97834762 SNP_biallelic 970470 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 11148149 INDEL_biallelic 66856 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_SNP_biallelic.no_monomorphic.vcf.gz 87239365 SNP_biallelic 1121342 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 9984400 INDEL_biallelic 81996 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_SNP_biallelic.no_monomorphic.vcf.gz 92046049 SNP_biallelic 966063 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 10206686 INDEL_biallelic 59807 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_SNP_biallelic.no_monomorphic.vcf.gz 197068241 SNP_biallelic 1705489 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 19072146 INDEL_biallelic 99102 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_SNP_biallelic.no_monomorphic.vcf.gz 103851068 SNP_biallelic 1083521 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 11265671 INDEL_biallelic 67879 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1800847 SNP_multiallelic 14318 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1039424 INDEL_multiallelic 3971 503 hg38 9 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1543435 SNP_multiallelic 14325 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 853700 INDEL_multiallelic 3971 347 hg38 9 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1729053 SNP_multiallelic 14315 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1006769 INDEL_multiallelic 3969 504 hg38 9 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2705589 SNP_multiallelic 14349 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1489095 INDEL_multiallelic 3982 661 hg38 9 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1821540 SNP_multiallelic 14322 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/9/9_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1050544 INDEL_multiallelic 3971 489 hg38 9 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 542448 INDEL_multiallelic 4642 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 547204 INDEL_multiallelic 4647 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 53875631 SNP_biallelic 1086017 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6841522 INDEL_biallelic 94107 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1701830 SNP_multiallelic 32075 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 590150 INDEL_multiallelic 4664 96 hg38 10 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4458051 INDEL_biallelic 57387 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4490046 INDEL_biallelic 57801 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 42328714 SNP_biallelic 971093 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5613703 INDEL_biallelic 88213 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1502485 SNP_multiallelic 32070 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 504585 INDEL_multiallelic 4665 61 hg38 10 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1552889 SNP_multiallelic 32041 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 543641 INDEL_multiallelic 4642 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 33474830 SNP_biallelic 703649 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4744184 INDEL_biallelic 64985 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1532177 SNP_multiallelic 32047 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 529052 INDEL_multiallelic 4651 86 hg38 10 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5537192 INDEL_biallelic 76101 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 27502146 SNP_biallelic 568086 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4201300 INDEL_biallelic 55785 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 1518457 SNP_multiallelic 32037 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 521495 INDEL_multiallelic 4641 93 hg38 10 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 30344663 SNP_biallelic 614673 103 hg38 10 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 32208809 SNP_biallelic 639756 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4758537 INDEL_biallelic 61795 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1557358 SNP_multiallelic 32045 99 hg38 10 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1553148 SNP_multiallelic 32040 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 29333763 SNP_biallelic 590065 105 hg38 10 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1588351 SNP_multiallelic 32047 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 39490983 SNP_biallelic 810985 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1583376 SNP_multiallelic 32062 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 553924 INDEL_multiallelic 4658 94 hg38 10 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 56055186 SNP_biallelic 1064280 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 635777 INDEL_multiallelic 4661 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 50145320 SNP_biallelic 986689 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6612896 INDEL_biallelic 88536 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1706873 SNP_multiallelic 32064 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 596574 INDEL_multiallelic 4659 99 hg38 10 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7124952 INDEL_biallelic 90624 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 566996 INDEL_multiallelic 4646 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5072112 INDEL_biallelic 65389 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 29367386 SNP_biallelic 570151 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4617525 INDEL_biallelic 59704 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1549628 SNP_multiallelic 32038 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 543736 INDEL_multiallelic 4640 99 hg38 10 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1777227 SNP_multiallelic 32074 113 hg38 10 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 29993847 SNP_biallelic 604142 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4547517 INDEL_biallelic 60493 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1534304 SNP_multiallelic 32044 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 529479 INDEL_multiallelic 4642 91 hg38 10 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1594761 SNP_multiallelic 32045 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 36062517 SNP_biallelic 706114 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 34159983 SNP_biallelic 669599 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5003993 INDEL_biallelic 64226 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1587544 SNP_multiallelic 32038 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 561495 INDEL_multiallelic 4647 103 hg38 10 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5186521 INDEL_biallelic 66598 107 hg38 10 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 1420600 SNP_multiallelic 32054 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 35441646 SNP_biallelic 707706 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 562200 INDEL_multiallelic 4649 102 hg38 10 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 481616 INDEL_multiallelic 4654 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 29929274 SNP_biallelic 642542 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 28510214 SNP_biallelic 568463 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4443727 INDEL_biallelic 56694 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1550328 SNP_multiallelic 32038 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 544027 INDEL_multiallelic 4643 104 hg38 10 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 30132400 SNP_biallelic 619306 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4464615 INDEL_biallelic 58350 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1539995 SNP_multiallelic 32041 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 536920 INDEL_multiallelic 4645 99 hg38 10 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4451973 INDEL_biallelic 62947 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 53668540 SNP_biallelic 1071634 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6727720 INDEL_biallelic 90177 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1713584 SNP_multiallelic 32077 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 597497 INDEL_multiallelic 4666 99 hg38 10 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 1471135 SNP_multiallelic 32046 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 48732307 SNP_biallelic 1014006 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6270276 INDEL_biallelic 88834 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1637876 SNP_multiallelic 32071 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 561080 INDEL_multiallelic 4662 85 hg38 10 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 510407 INDEL_multiallelic 4648 85 hg38 10 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 29803870 SNP_biallelic 683736 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4413856 INDEL_biallelic 67535 64 hg38 10 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1568872 SNP_multiallelic 32049 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 34417880 SNP_biallelic 699607 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4960993 INDEL_biallelic 65571 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 549920 INDEL_multiallelic 4650 96 hg38 10 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 45110073 SNP_biallelic 899155 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 6146746 INDEL_biallelic 82484 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1642218 SNP_multiallelic 32071 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 582288 INDEL_multiallelic 4664 104 hg38 10 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 35465309 SNP_biallelic 708589 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 5066370 INDEL_biallelic 65285 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1588965 SNP_multiallelic 32049 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 561261 INDEL_multiallelic 4646 102 hg38 10 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 34976619 SNP_biallelic 682785 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 5036224 INDEL_biallelic 63736 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1593360 SNP_multiallelic 32050 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 565845 INDEL_multiallelic 4645 107 hg38 10 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 53194901 SNP_biallelic 1018325 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6948849 INDEL_biallelic 90700 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1749161 SNP_multiallelic 32068 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/pop/10_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 618439 INDEL_multiallelic 4663 108 hg38 10 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_SNP_biallelic.no_monomorphic.vcf.gz 112659230 SNP_biallelic 1112287 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13297106 INDEL_biallelic 79178 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_SNP_biallelic.no_monomorphic.vcf.gz 100985517 SNP_biallelic 1297655 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11922258 INDEL_biallelic 97061 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_SNP_biallelic.no_monomorphic.vcf.gz 104723897 SNP_biallelic 1094790 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 12071426 INDEL_biallelic 70756 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_SNP_biallelic.no_monomorphic.vcf.gz 224373906 SNP_biallelic 1930507 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22431010 INDEL_biallelic 115850 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_SNP_biallelic.no_monomorphic.vcf.gz 118882702 SNP_biallelic 1234453 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13403313 INDEL_biallelic 80217 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2803728 SNP_multiallelic 32063 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1257351 INDEL_multiallelic 4657 503 hg38 10 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 2450183 SNP_multiallelic 32092 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1035963 INDEL_multiallelic 4669 347 hg38 10 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 2710435 SNP_multiallelic 32056 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1204159 INDEL_multiallelic 4657 504 hg38 10 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 4006773 SNP_multiallelic 32110 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1779927 INDEL_multiallelic 4673 661 hg38 10 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2828047 SNP_multiallelic 32062 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/10/10_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1265459 INDEL_multiallelic 4664 489 hg38 10 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 522291 INDEL_multiallelic 4455 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 528183 INDEL_multiallelic 4459 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 53458996 SNP_biallelic 1077320 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6717777 INDEL_biallelic 93326 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1158466 SNP_multiallelic 16087 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 570999 INDEL_multiallelic 4477 96 hg38 11 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4261386 INDEL_biallelic 55376 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4275701 INDEL_biallelic 55419 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 42243587 SNP_biallelic 972336 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5522888 INDEL_biallelic 87734 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 1013244 SNP_multiallelic 16081 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 486166 INDEL_multiallelic 4472 61 hg38 11 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 1022781 SNP_multiallelic 16043 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 521490 INDEL_multiallelic 4451 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 32522864 SNP_biallelic 687630 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4522484 INDEL_biallelic 62665 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 1010852 SNP_multiallelic 16052 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 506415 INDEL_multiallelic 4457 86 hg38 11 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5443880 INDEL_biallelic 75969 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 26781784 SNP_biallelic 554454 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4004594 INDEL_biallelic 53639 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 995385 SNP_multiallelic 16044 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 500700 INDEL_multiallelic 4443 93 hg38 11 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 29404233 SNP_biallelic 596321 103 hg38 11 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 31496922 SNP_biallelic 625891 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4574524 INDEL_biallelic 59960 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 1034589 SNP_multiallelic 16056 99 hg38 11 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 1022101 SNP_multiallelic 16046 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 28625964 SNP_biallelic 577939 105 hg38 11 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 1055435 SNP_multiallelic 16051 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 39533311 SNP_biallelic 814616 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 1057969 SNP_multiallelic 16071 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 532904 INDEL_multiallelic 4470 94 hg38 11 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 55344198 SNP_biallelic 1050054 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 612614 INDEL_multiallelic 4472 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 50374300 SNP_biallelic 993397 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6522045 INDEL_biallelic 88312 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1165399 SNP_multiallelic 16085 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 577564 INDEL_multiallelic 4472 99 hg38 11 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6968763 INDEL_biallelic 89472 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 546929 INDEL_multiallelic 4464 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4832438 INDEL_biallelic 63094 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 28745284 SNP_biallelic 558715 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4443896 INDEL_biallelic 58018 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 1028608 SNP_multiallelic 16056 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 524634 INDEL_multiallelic 4453 99 hg38 11 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1220158 SNP_multiallelic 16090 113 hg38 11 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 29394909 SNP_biallelic 592226 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4382799 INDEL_biallelic 58855 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 1014154 SNP_multiallelic 16052 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 511900 INDEL_multiallelic 4455 91 hg38 11 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 1067681 SNP_multiallelic 16066 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 35205827 SNP_biallelic 689941 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 33190236 SNP_biallelic 653517 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4765736 INDEL_biallelic 61864 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 1054184 SNP_multiallelic 16053 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 538453 INDEL_multiallelic 4455 103 hg38 11 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4985984 INDEL_biallelic 64653 107 hg38 11 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 935248 SNP_multiallelic 16059 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 34501506 SNP_biallelic 693583 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 539360 INDEL_multiallelic 4459 102 hg38 11 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 460484 INDEL_multiallelic 4463 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 30446344 SNP_biallelic 658702 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 27804958 SNP_biallelic 554495 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4256987 INDEL_biallelic 54846 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 1022101 SNP_multiallelic 16046 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 523595 INDEL_multiallelic 4453 104 hg38 11 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 29755651 SNP_biallelic 614583 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4287354 INDEL_biallelic 56667 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 1014708 SNP_multiallelic 16051 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 516068 INDEL_multiallelic 4450 99 hg38 11 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4405127 INDEL_biallelic 63345 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 53139225 SNP_biallelic 1062307 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6572706 INDEL_biallelic 89094 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1164289 SNP_multiallelic 16082 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 575483 INDEL_multiallelic 4474 99 hg38 11 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 978743 SNP_multiallelic 16053 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 48541209 SNP_biallelic 1011561 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6172705 INDEL_biallelic 88455 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1115371 SNP_multiallelic 16084 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 542431 INDEL_multiallelic 4474 85 hg38 11 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 489852 INDEL_multiallelic 4457 85 hg38 11 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 27823769 SNP_biallelic 638802 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4128378 INDEL_biallelic 63574 64 hg38 11 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 1039144 SNP_multiallelic 16059 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 33642516 SNP_biallelic 687252 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4746498 INDEL_biallelic 63492 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 527582 INDEL_multiallelic 4456 96 hg38 11 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 43496383 SNP_biallelic 870259 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5869072 INDEL_biallelic 79703 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 1098834 SNP_multiallelic 16080 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 557551 INDEL_multiallelic 4469 104 hg38 11 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 34619291 SNP_biallelic 696207 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4839361 INDEL_biallelic 63103 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 1054857 SNP_multiallelic 16055 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 538528 INDEL_multiallelic 4454 102 hg38 11 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 34505455 SNP_biallelic 675945 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4857524 INDEL_biallelic 62201 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 1061531 SNP_multiallelic 16059 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 544745 INDEL_multiallelic 4457 107 hg38 11 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 52965152 SNP_biallelic 1014340 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6833670 INDEL_biallelic 90170 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1202029 SNP_multiallelic 16090 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/pop/11_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 597861 INDEL_multiallelic 4470 108 hg38 11 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_SNP_biallelic.no_monomorphic.vcf.gz 111379936 SNP_biallelic 1105503 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 12815018 INDEL_biallelic 77225 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_SNP_biallelic.no_monomorphic.vcf.gz 99510711 SNP_biallelic 1289573 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11517467 INDEL_biallelic 95609 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_SNP_biallelic.no_monomorphic.vcf.gz 103612024 SNP_biallelic 1098682 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11585522 INDEL_biallelic 68868 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_SNP_biallelic.no_monomorphic.vcf.gz 224021392 SNP_biallelic 1934171 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22043859 INDEL_biallelic 115068 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_SNP_biallelic.no_monomorphic.vcf.gz 116897167 SNP_biallelic 1231562 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 12759455 INDEL_biallelic 77627 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 2016420 SNP_multiallelic 16083 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1216146 INDEL_multiallelic 4474 503 hg38 11 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1731544 SNP_multiallelic 16108 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 991482 INDEL_multiallelic 4477 347 hg38 11 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1916065 SNP_multiallelic 16069 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1157555 INDEL_multiallelic 4468 504 hg38 11 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 3028731 SNP_multiallelic 16121 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1728963 INDEL_multiallelic 4489 661 hg38 11 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 2020673 SNP_multiallelic 16076 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/11/11_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1211145 INDEL_multiallelic 4469 489 hg38 11 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 549107 INDEL_multiallelic 4654 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 548946 INDEL_multiallelic 4657 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 49875319 SNP_biallelic 1005649 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6764814 INDEL_biallelic 93295 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 1041388 SNP_multiallelic 14456 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 591390 INDEL_multiallelic 4664 96 hg38 12 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 4365095 INDEL_biallelic 56169 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 4408966 INDEL_biallelic 56768 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 39373190 SNP_biallelic 904463 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5563098 INDEL_biallelic 87798 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 913700 SNP_multiallelic 14455 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 504610 INDEL_multiallelic 4662 61 hg38 12 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 928388 SNP_multiallelic 14432 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 548646 INDEL_multiallelic 4654 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 30930690 SNP_biallelic 649483 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 4660392 INDEL_biallelic 63938 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 917702 SNP_multiallelic 14439 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 531375 INDEL_multiallelic 4658 86 hg38 12 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 5405740 INDEL_biallelic 74459 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 25544426 SNP_biallelic 525554 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4149254 INDEL_biallelic 55101 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 904607 SNP_multiallelic 14432 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 527433 INDEL_multiallelic 4652 93 hg38 12 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 28048472 SNP_biallelic 566331 103 hg38 12 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 29699825 SNP_biallelic 590415 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 4666927 INDEL_biallelic 60711 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 935676 SNP_multiallelic 14437 99 hg38 12 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 928414 SNP_multiallelic 14436 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 27174290 SNP_biallelic 545633 105 hg38 12 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 957478 SNP_multiallelic 14444 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 36136669 SNP_biallelic 742092 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 951419 SNP_multiallelic 14447 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 553348 INDEL_multiallelic 4665 94 hg38 12 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 51791627 SNP_biallelic 985474 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 635315 INDEL_multiallelic 4661 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 46619267 SNP_biallelic 918419 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 6549524 INDEL_biallelic 88043 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 1045987 SNP_multiallelic 14453 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 598480 INDEL_multiallelic 4662 99 hg38 12 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 7020979 INDEL_biallelic 89532 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 569050 INDEL_multiallelic 4656 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 4951502 INDEL_biallelic 63865 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 27038304 SNP_biallelic 524226 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 4523104 INDEL_biallelic 58513 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 931263 SNP_multiallelic 14439 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 546512 INDEL_multiallelic 4655 99 hg38 12 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 1094231 SNP_multiallelic 14457 113 hg38 12 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 27486092 SNP_biallelic 554074 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 4431717 INDEL_biallelic 59038 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 916228 SNP_multiallelic 14441 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 531701 INDEL_multiallelic 4656 91 hg38 12 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 962736 SNP_multiallelic 14437 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 32787551 SNP_biallelic 640426 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 31398670 SNP_biallelic 614111 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 4892107 INDEL_biallelic 62892 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 957204 SNP_multiallelic 14443 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 562887 INDEL_multiallelic 4657 103 hg38 12 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5033324 INDEL_biallelic 64513 107 hg38 12 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 850583 SNP_multiallelic 14440 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 32513813 SNP_biallelic 647497 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 565729 INDEL_multiallelic 4658 102 hg38 12 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 481294 INDEL_multiallelic 4661 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 28939173 SNP_biallelic 621853 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 26406935 SNP_biallelic 525191 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 4373253 INDEL_biallelic 55975 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 928442 SNP_multiallelic 14435 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 549085 INDEL_multiallelic 4655 104 hg38 12 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 27993329 SNP_biallelic 573770 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 4391655 INDEL_biallelic 57439 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 919667 SNP_multiallelic 14433 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 541380 INDEL_multiallelic 4655 99 hg38 12 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 4496517 INDEL_biallelic 63996 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 49801460 SNP_biallelic 994251 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 6649313 INDEL_biallelic 89352 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 1047523 SNP_multiallelic 14449 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 599010 INDEL_multiallelic 4664 99 hg38 12 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 890110 SNP_multiallelic 14438 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 44988228 SNP_biallelic 937535 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 6190841 INDEL_biallelic 88063 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 1001749 SNP_multiallelic 14452 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 562398 INDEL_multiallelic 4663 85 hg38 12 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 513648 INDEL_multiallelic 4659 85 hg38 12 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 27046992 SNP_biallelic 620487 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 4285359 INDEL_biallelic 65776 64 hg38 12 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 943897 SNP_multiallelic 14448 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 31973466 SNP_biallelic 649740 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 4888562 INDEL_biallelic 64849 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 551911 INDEL_multiallelic 4659 96 hg38 12 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 41208717 SNP_biallelic 822502 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 5985169 INDEL_biallelic 80582 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 992747 SNP_multiallelic 14450 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 580893 INDEL_multiallelic 4663 104 hg38 12 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 32593940 SNP_biallelic 649811 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 4949931 INDEL_biallelic 63766 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 957325 SNP_multiallelic 14444 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 566148 INDEL_multiallelic 4657 102 hg38 12 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 32371974 SNP_biallelic 631391 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 4937508 INDEL_biallelic 62486 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 961896 SNP_multiallelic 14440 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 568124 INDEL_multiallelic 4657 107 hg38 12 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 49265164 SNP_biallelic 944002 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 6864359 INDEL_biallelic 89926 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 1076742 SNP_multiallelic 14455 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/pop/12_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 619700 INDEL_multiallelic 4661 108 hg38 12 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_SNP_biallelic.no_monomorphic.vcf.gz 104188778 SNP_biallelic 1033577 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 13010094 INDEL_biallelic 77529 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_SNP_biallelic.no_monomorphic.vcf.gz 93667912 SNP_biallelic 1207470 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 11686833 INDEL_biallelic 95708 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_SNP_biallelic.no_monomorphic.vcf.gz 97598461 SNP_biallelic 1023187 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 11878327 INDEL_biallelic 69811 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_SNP_biallelic.no_monomorphic.vcf.gz 208535478 SNP_biallelic 1802923 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 22194272 INDEL_biallelic 114987 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_SNP_biallelic.no_monomorphic.vcf.gz 110438888 SNP_biallelic 1153778 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 13146217 INDEL_biallelic 79009 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1816913 SNP_multiallelic 14451 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 1264396 INDEL_multiallelic 4660 503 hg38 12 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1560398 SNP_multiallelic 14464 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 1034613 INDEL_multiallelic 4667 347 hg38 12 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1735269 SNP_multiallelic 14453 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1223009 INDEL_multiallelic 4662 504 hg38 12 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2700072 SNP_multiallelic 14488 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1787286 INDEL_multiallelic 4669 661 hg38 12 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1831379 SNP_multiallelic 14469 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/12/12_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 1274187 INDEL_multiallelic 4661 489 hg38 12 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 426248 INDEL_multiallelic 3610 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 429034 INDEL_multiallelic 3613 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 38331512 SNP_biallelic 774283 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 5316069 INDEL_biallelic 74041 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 798860 SNP_multiallelic 10765 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 461578 INDEL_multiallelic 3621 96 hg38 13 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3396390 INDEL_biallelic 44361 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3424370 INDEL_biallelic 44772 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 30149872 SNP_biallelic 694674 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 4371187 INDEL_biallelic 69531 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 698578 SNP_multiallelic 10759 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 392539 INDEL_multiallelic 3620 61 hg38 13 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 706485 SNP_multiallelic 10749 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 426213 INDEL_multiallelic 3607 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 23918189 SNP_biallelic 504744 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3652184 INDEL_biallelic 50763 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 697621 SNP_multiallelic 10750 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 413791 INDEL_multiallelic 3610 86 hg38 13 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 4242272 INDEL_biallelic 58904 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 19642833 SNP_biallelic 407521 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 3211704 INDEL_biallelic 43227 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 689089 SNP_multiallelic 10751 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 409832 INDEL_multiallelic 3609 93 hg38 13 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 21584351 SNP_biallelic 439509 103 hg38 13 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 23193062 SNP_biallelic 461766 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3657136 INDEL_biallelic 47962 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 714778 SNP_multiallelic 10751 99 hg38 13 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 706812 SNP_multiallelic 10748 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 20954317 SNP_biallelic 424238 105 hg38 13 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 727824 SNP_multiallelic 10747 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 27798635 SNP_biallelic 570513 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 727148 SNP_multiallelic 10756 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 430791 INDEL_multiallelic 3615 94 hg38 13 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 40134297 SNP_biallelic 763814 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 495305 INDEL_multiallelic 3618 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 35980848 SNP_biallelic 710145 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 5167836 INDEL_biallelic 70187 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 805379 SNP_multiallelic 10761 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 466289 INDEL_multiallelic 3620 99 hg38 13 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 5563395 INDEL_biallelic 71738 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 444010 INDEL_multiallelic 3616 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3872432 INDEL_biallelic 50620 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 21129906 SNP_biallelic 411082 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3558202 INDEL_biallelic 46495 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 712212 SNP_multiallelic 10747 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 426589 INDEL_multiallelic 3610 99 hg38 13 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 842693 SNP_multiallelic 10757 113 hg38 13 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 21442054 SNP_biallelic 433006 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3484884 INDEL_biallelic 46818 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 700702 SNP_multiallelic 10752 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 415564 INDEL_multiallelic 3613 91 hg38 13 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 736168 SNP_multiallelic 10752 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 25809656 SNP_biallelic 505880 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 24374464 SNP_biallelic 479263 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3840143 INDEL_biallelic 50001 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 729735 SNP_multiallelic 10748 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 440540 INDEL_multiallelic 3615 103 hg38 13 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 4000203 INDEL_biallelic 51975 107 hg38 13 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 648479 SNP_multiallelic 10751 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 25180833 SNP_biallelic 504748 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 440913 INDEL_multiallelic 3612 102 hg38 13 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 374538 INDEL_multiallelic 3617 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 22112910 SNP_biallelic 475206 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 20354438 SNP_biallelic 407698 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3389154 INDEL_biallelic 43952 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 705504 SNP_multiallelic 10752 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 427177 INDEL_multiallelic 3609 104 hg38 13 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 21446858 SNP_biallelic 442767 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3405233 INDEL_biallelic 45146 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 700650 SNP_multiallelic 10748 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 421476 INDEL_multiallelic 3612 99 hg38 13 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3512751 INDEL_biallelic 50333 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 38152316 SNP_biallelic 762340 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 5238019 INDEL_biallelic 71118 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 804527 SNP_multiallelic 10757 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 467013 INDEL_multiallelic 3618 99 hg38 13 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 679639 SNP_multiallelic 10753 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 34890346 SNP_biallelic 728779 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4899893 INDEL_biallelic 70416 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 770380 SNP_multiallelic 10756 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 438600 INDEL_multiallelic 3621 85 hg38 13 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 400730 INDEL_multiallelic 3614 85 hg38 13 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 20494327 SNP_biallelic 470474 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 3318188 INDEL_biallelic 51112 64 hg38 13 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 718256 SNP_multiallelic 10751 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 24829554 SNP_biallelic 506606 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3833120 INDEL_biallelic 51387 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 431737 INDEL_multiallelic 3616 96 hg38 13 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 31801116 SNP_biallelic 633911 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4720770 INDEL_biallelic 64087 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 760196 SNP_multiallelic 10762 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 454161 INDEL_multiallelic 3621 104 hg38 13 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 25385733 SNP_biallelic 509782 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3895526 INDEL_biallelic 50914 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 729496 SNP_multiallelic 10753 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 441286 INDEL_multiallelic 3613 102 hg38 13 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 24981344 SNP_biallelic 487786 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3856061 INDEL_biallelic 49315 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 733957 SNP_multiallelic 10754 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 443479 INDEL_multiallelic 3613 107 hg38 13 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 38061596 SNP_biallelic 730309 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 5416035 INDEL_biallelic 71633 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 829808 SNP_multiallelic 10759 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/pop/13_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 483748 INDEL_multiallelic 3619 108 hg38 13 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_SNP_biallelic.no_monomorphic.vcf.gz 80999637 SNP_biallelic 795320 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 10225836 INDEL_biallelic 61780 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_SNP_biallelic.no_monomorphic.vcf.gz 71847493 SNP_biallelic 919364 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 9174209 INDEL_biallelic 76148 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_SNP_biallelic.no_monomorphic.vcf.gz 74869527 SNP_biallelic 783104 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 9217587 INDEL_biallelic 55197 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_SNP_biallelic.no_monomorphic.vcf.gz 160665832 SNP_biallelic 1370978 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 17513031 INDEL_biallelic 91402 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_SNP_biallelic.no_monomorphic.vcf.gz 85204173 SNP_biallelic 885483 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 10287639 INDEL_biallelic 62883 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1399919 SNP_multiallelic 10762 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 987565 INDEL_multiallelic 3618 503 hg38 13 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1200241 SNP_multiallelic 10766 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 808545 INDEL_multiallelic 3621 347 hg38 13 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1327216 SNP_multiallelic 10757 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 950219 INDEL_multiallelic 3613 504 hg38 13 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2103221 SNP_multiallelic 10774 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1396838 INDEL_multiallelic 3624 661 hg38 13 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1400402 SNP_multiallelic 10758 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/13/13_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 997288 INDEL_multiallelic 3618 489 hg38 13 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 359648 INDEL_multiallelic 3063 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 360714 INDEL_multiallelic 3060 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 35295202 SNP_biallelic 706901 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4697418 INDEL_biallelic 64844 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 762976 SNP_multiallelic 10460 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 390175 INDEL_multiallelic 3067 96 hg38 14 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 3015550 INDEL_biallelic 38997 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 3052088 INDEL_biallelic 39550 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 27699467 SNP_biallelic 631427 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3843685 INDEL_biallelic 60641 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 667809 SNP_multiallelic 10457 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 333377 INDEL_multiallelic 3069 61 hg38 14 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 679990 SNP_multiallelic 10443 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 359966 INDEL_multiallelic 3061 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 21735310 SNP_biallelic 453660 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 3203017 INDEL_biallelic 44019 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 671779 SNP_multiallelic 10446 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 348788 INDEL_multiallelic 3064 86 hg38 14 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3798038 INDEL_biallelic 52643 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 18006185 SNP_biallelic 368720 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2856207 INDEL_biallelic 38060 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 661585 SNP_multiallelic 10446 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 346191 INDEL_multiallelic 3061 93 hg38 14 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 19839593 SNP_biallelic 399657 103 hg38 14 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 20848392 SNP_biallelic 411726 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 3201993 INDEL_biallelic 41735 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 683505 SNP_multiallelic 10449 99 hg38 14 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 678626 SNP_multiallelic 10444 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 19105459 SNP_biallelic 382266 105 hg38 14 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 697837 SNP_multiallelic 10448 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 26046488 SNP_biallelic 533307 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 696928 SNP_multiallelic 10449 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 365005 INDEL_multiallelic 3070 94 hg38 14 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 36671194 SNP_biallelic 692516 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 419327 INDEL_multiallelic 3072 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 32916051 SNP_biallelic 643251 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4526527 INDEL_biallelic 60706 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 766510 SNP_multiallelic 10458 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 394916 INDEL_multiallelic 3068 99 hg38 14 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4882274 INDEL_biallelic 62383 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 372572 INDEL_multiallelic 3062 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3409637 INDEL_biallelic 44144 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 19040042 SNP_biallelic 366818 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 3121845 INDEL_biallelic 40530 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 680327 SNP_multiallelic 10445 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 358324 INDEL_multiallelic 3064 99 hg38 14 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 802095 SNP_multiallelic 10462 113 hg38 14 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 19552069 SNP_biallelic 391548 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 3078441 INDEL_biallelic 41181 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 669450 SNP_multiallelic 10444 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 349214 INDEL_multiallelic 3063 91 hg38 14 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 703260 SNP_multiallelic 10448 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 23033568 SNP_biallelic 446524 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 22077762 SNP_biallelic 428571 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3373976 INDEL_biallelic 43417 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 699392 SNP_multiallelic 10445 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 370338 INDEL_multiallelic 3062 103 hg38 14 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3462672 INDEL_biallelic 44455 107 hg38 14 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 620854 SNP_multiallelic 10450 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 22823855 SNP_biallelic 452141 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 370077 INDEL_multiallelic 3064 102 hg38 14 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 315496 INDEL_multiallelic 3065 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 20427884 SNP_biallelic 438863 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 18639153 SNP_biallelic 368953 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 3017770 INDEL_biallelic 38743 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 679503 SNP_multiallelic 10443 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 360674 INDEL_multiallelic 3063 104 hg38 14 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 19586261 SNP_biallelic 400212 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 3008075 INDEL_biallelic 39523 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 672162 SNP_multiallelic 10447 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 355281 INDEL_multiallelic 3061 99 hg38 14 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 3109646 INDEL_biallelic 44666 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 35568576 SNP_biallelic 707426 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4637561 INDEL_biallelic 62508 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 768346 SNP_multiallelic 10462 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 395419 INDEL_multiallelic 3067 99 hg38 14 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 648485 SNP_multiallelic 10445 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 32017540 SNP_biallelic 662216 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 4308312 INDEL_biallelic 61274 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 734231 SNP_multiallelic 10458 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 371338 INDEL_multiallelic 3068 85 hg38 14 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 336476 INDEL_multiallelic 3068 85 hg38 14 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 18702903 SNP_biallelic 426241 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2916960 INDEL_biallelic 44798 64 hg38 14 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 688093 SNP_multiallelic 10447 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 22471749 SNP_biallelic 453998 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3366596 INDEL_biallelic 44780 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 362709 INDEL_multiallelic 3065 96 hg38 14 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 28632842 SNP_biallelic 569733 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 4106370 INDEL_biallelic 55490 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 723341 SNP_multiallelic 10456 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 380121 INDEL_multiallelic 3069 104 hg38 14 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 22948481 SNP_biallelic 454975 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3418491 INDEL_biallelic 44170 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 698892 SNP_multiallelic 10446 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 370680 INDEL_multiallelic 3064 102 hg38 14 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 22959340 SNP_biallelic 445665 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3418759 INDEL_biallelic 43488 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 702099 SNP_multiallelic 10448 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 373836 INDEL_multiallelic 3065 107 hg38 14 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 34737049 SNP_biallelic 660543 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4747875 INDEL_biallelic 62121 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 789440 SNP_multiallelic 10460 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/pop/14_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 408750 INDEL_multiallelic 3070 108 hg38 14 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_SNP_biallelic.no_monomorphic.vcf.gz 72885523 SNP_biallelic 721457 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8940834 INDEL_biallelic 53260 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_SNP_biallelic.no_monomorphic.vcf.gz 65523459 SNP_biallelic 846441 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 8065518 INDEL_biallelic 66436 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_SNP_biallelic.no_monomorphic.vcf.gz 68777289 SNP_biallelic 719544 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 8231020 INDEL_biallelic 48414 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_SNP_biallelic.no_monomorphic.vcf.gz 146972374 SNP_biallelic 1270457 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 15410242 INDEL_biallelic 79903 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_SNP_biallelic.no_monomorphic.vcf.gz 77553337 SNP_biallelic 810251 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 9085148 INDEL_biallelic 54882 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1324430 SNP_multiallelic 10461 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 822872 INDEL_multiallelic 3071 503 hg38 14 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1138657 SNP_multiallelic 10463 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 673665 INDEL_multiallelic 3073 347 hg38 14 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1272793 SNP_multiallelic 10458 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 795779 INDEL_multiallelic 3066 504 hg38 14 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1975978 SNP_multiallelic 10479 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1171844 INDEL_multiallelic 3078 661 hg38 14 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1337096 SNP_multiallelic 10463 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/14/14_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 829789 INDEL_multiallelic 3074 489 hg38 14 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 319502 INDEL_multiallelic 2761 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 318829 INDEL_multiallelic 2750 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 32793917 SNP_biallelic 648648 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4312370 INDEL_biallelic 58607 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 683898 SNP_multiallelic 9371 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 350184 INDEL_multiallelic 2772 96 hg38 15 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2784835 INDEL_biallelic 35399 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2799134 INDEL_biallelic 35526 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 25807512 SNP_biallelic 580199 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3539848 INDEL_biallelic 55150 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 599098 SNP_multiallelic 9369 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 298779 INDEL_multiallelic 2772 61 hg38 15 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 605254 SNP_multiallelic 9360 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 319933 INDEL_multiallelic 2759 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 19905987 SNP_biallelic 409450 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2931472 INDEL_biallelic 39715 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 596360 SNP_multiallelic 9358 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 310106 INDEL_multiallelic 2760 86 hg38 15 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3382742 INDEL_biallelic 45976 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 16703182 SNP_biallelic 335628 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2631061 INDEL_biallelic 34457 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 588461 SNP_multiallelic 9359 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 307374 INDEL_multiallelic 2756 93 hg38 15 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 18340313 SNP_biallelic 362239 103 hg38 15 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18829060 SNP_biallelic 365446 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2912657 INDEL_biallelic 37383 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 605446 SNP_multiallelic 9353 99 hg38 15 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 604117 SNP_multiallelic 9362 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 17786262 SNP_biallelic 349176 105 hg38 15 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 621897 SNP_multiallelic 9359 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 23007277 SNP_biallelic 462295 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 618120 SNP_multiallelic 9366 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 324015 INDEL_multiallelic 2766 94 hg38 15 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 34061970 SNP_biallelic 634259 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 375817 INDEL_multiallelic 2773 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 30476347 SNP_biallelic 586667 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4172851 INDEL_biallelic 55139 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 687255 SNP_multiallelic 9368 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 353846 INDEL_multiallelic 2769 99 hg38 15 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4490397 INDEL_biallelic 56460 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 331726 INDEL_multiallelic 2760 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3108772 INDEL_biallelic 39608 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 17313570 SNP_biallelic 326945 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2841180 INDEL_biallelic 36254 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 603964 SNP_multiallelic 9350 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 317863 INDEL_multiallelic 2752 99 hg38 15 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 720090 SNP_multiallelic 9372 113 hg38 15 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 17613028 SNP_biallelic 345842 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2796946 INDEL_biallelic 36780 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 594768 SNP_multiallelic 9353 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 310708 INDEL_multiallelic 2756 91 hg38 15 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 623652 SNP_multiallelic 9360 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 21142545 SNP_biallelic 405542 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 20011718 SNP_biallelic 382229 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3059330 INDEL_biallelic 38708 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 621485 SNP_multiallelic 9359 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 328843 INDEL_multiallelic 2760 103 hg38 15 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3173799 INDEL_biallelic 40285 107 hg38 15 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 552010 SNP_multiallelic 9358 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 20923688 SNP_biallelic 409016 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 329501 INDEL_multiallelic 2759 102 hg38 15 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 281863 INDEL_multiallelic 2759 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 18331167 SNP_biallelic 384252 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 17361426 SNP_biallelic 337235 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2781404 INDEL_biallelic 34992 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 605455 SNP_multiallelic 9361 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 321591 INDEL_multiallelic 2765 104 hg38 15 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 18202400 SNP_biallelic 364925 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2781612 INDEL_biallelic 35812 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 599489 SNP_multiallelic 9359 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 315131 INDEL_multiallelic 2759 99 hg38 15 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2806863 INDEL_biallelic 39296 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 32898496 SNP_biallelic 644609 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4261833 INDEL_biallelic 56561 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 688803 SNP_multiallelic 9371 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 354276 INDEL_multiallelic 2774 99 hg38 15 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 578132 SNP_multiallelic 9354 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 29820465 SNP_biallelic 609082 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3976738 INDEL_biallelic 55884 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 659155 SNP_multiallelic 9369 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 333223 INDEL_multiallelic 2772 85 hg38 15 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 300469 INDEL_multiallelic 2760 85 hg38 15 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 16864941 SNP_biallelic 375347 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2625509 INDEL_biallelic 39439 64 hg38 15 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 612136 SNP_multiallelic 9360 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 20424146 SNP_biallelic 406201 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3053620 INDEL_biallelic 39911 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 322393 INDEL_multiallelic 2761 96 hg38 15 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 26035030 SNP_biallelic 509724 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3729702 INDEL_biallelic 49578 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 643738 SNP_multiallelic 9367 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 339773 INDEL_multiallelic 2770 104 hg38 15 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 20827125 SNP_biallelic 406172 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3109176 INDEL_biallelic 39508 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 622795 SNP_multiallelic 9361 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 329928 INDEL_multiallelic 2762 102 hg38 15 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 20599615 SNP_biallelic 393911 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3083811 INDEL_biallelic 38553 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 622006 SNP_multiallelic 9356 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 331632 INDEL_multiallelic 2761 107 hg38 15 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 32264045 SNP_biallelic 605582 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4378887 INDEL_biallelic 56563 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 707954 SNP_multiallelic 9369 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/pop/15_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 365468 INDEL_multiallelic 2771 108 hg38 15 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_SNP_biallelic.no_monomorphic.vcf.gz 65424901 SNP_biallelic 653981 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8096178 INDEL_biallelic 48212 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_SNP_biallelic.no_monomorphic.vcf.gz 58618801 SNP_biallelic 753247 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7276902 INDEL_biallelic 59145 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_SNP_biallelic.no_monomorphic.vcf.gz 62635007 SNP_biallelic 660634 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7494638 INDEL_biallelic 43652 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_SNP_biallelic.no_monomorphic.vcf.gz 134768632 SNP_biallelic 1162842 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 14098398 INDEL_biallelic 72288 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_SNP_biallelic.no_monomorphic.vcf.gz 69811342 SNP_biallelic 734381 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 8220755 INDEL_biallelic 49336 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1169993 SNP_multiallelic 9373 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 725014 INDEL_multiallelic 2772 503 hg38 15 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1010278 SNP_multiallelic 9379 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 599627 INDEL_multiallelic 2776 347 hg38 15 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1131583 SNP_multiallelic 9378 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 701785 INDEL_multiallelic 2773 504 hg38 15 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1782927 SNP_multiallelic 9389 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1051682 INDEL_multiallelic 2790 661 hg38 15 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1185051 SNP_multiallelic 9377 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/15/15_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 733478 INDEL_multiallelic 2775 489 hg38 15 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 313437 INDEL_multiallelic 2718 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 316590 INDEL_multiallelic 2721 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 35540035 SNP_biallelic 705189 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4088263 INDEL_biallelic 55138 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 878185 SNP_multiallelic 12414 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 345214 INDEL_multiallelic 2733 96 hg38 16 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2649739 INDEL_biallelic 33134 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2661993 INDEL_biallelic 33268 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 27802649 SNP_biallelic 624622 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3336599 INDEL_biallelic 51389 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 768925 SNP_multiallelic 12409 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 294744 INDEL_multiallelic 2729 61 hg38 16 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 774107 SNP_multiallelic 12389 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 314529 INDEL_multiallelic 2721 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 21456607 SNP_biallelic 440956 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2788404 INDEL_biallelic 37248 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 764504 SNP_multiallelic 12389 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 305117 INDEL_multiallelic 2725 86 hg38 16 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3298052 INDEL_biallelic 44476 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 17996631 SNP_biallelic 360496 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2514866 INDEL_biallelic 32354 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 755740 SNP_multiallelic 12392 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 303330 INDEL_multiallelic 2720 93 hg38 16 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 19405622 SNP_biallelic 382391 103 hg38 16 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 20663945 SNP_biallelic 400333 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2832514 INDEL_biallelic 35862 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 778433 SNP_multiallelic 12390 99 hg38 16 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 774173 SNP_multiallelic 12392 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 18881238 SNP_biallelic 369430 105 hg38 16 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 795663 SNP_multiallelic 12390 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 25766674 SNP_biallelic 519807 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 795857 SNP_multiallelic 12401 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 318939 INDEL_multiallelic 2729 94 hg38 16 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 36861730 SNP_biallelic 689608 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 371070 INDEL_multiallelic 2730 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 33382013 SNP_biallelic 645400 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3981865 INDEL_biallelic 52240 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 885738 SNP_multiallelic 12408 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 349951 INDEL_multiallelic 2731 99 hg38 16 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4254332 INDEL_biallelic 52964 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 327458 INDEL_multiallelic 2722 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2982137 INDEL_biallelic 37450 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 18769466 SNP_biallelic 352534 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2756705 INDEL_biallelic 34716 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 776199 SNP_multiallelic 12395 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 314357 INDEL_multiallelic 2719 99 hg38 16 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 925071 SNP_multiallelic 12415 113 hg38 16 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 19360030 SNP_biallelic 379224 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2706750 INDEL_biallelic 35109 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 763228 SNP_multiallelic 12390 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 306840 INDEL_multiallelic 2720 91 hg38 16 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 802312 SNP_multiallelic 12396 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 23589889 SNP_biallelic 454042 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 22053080 SNP_biallelic 421487 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2971797 INDEL_biallelic 37175 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 798043 SNP_multiallelic 12390 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 324184 INDEL_multiallelic 2722 103 hg38 16 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3108084 INDEL_biallelic 39072 107 hg38 16 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 706691 SNP_multiallelic 12389 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 22715108 SNP_biallelic 443238 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 324104 INDEL_multiallelic 2721 102 hg38 16 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 276455 INDEL_multiallelic 2722 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 19377625 SNP_biallelic 406832 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 18553480 SNP_biallelic 359860 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2673745 INDEL_biallelic 33240 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 774086 SNP_multiallelic 12389 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 315084 INDEL_multiallelic 2719 104 hg38 16 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 19495659 SNP_biallelic 389662 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2658374 INDEL_biallelic 33690 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 767240 SNP_multiallelic 12390 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 311214 INDEL_multiallelic 2718 99 hg38 16 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2642385 INDEL_biallelic 36596 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 35560652 SNP_biallelic 697781 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4055558 INDEL_biallelic 53311 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 888260 SNP_multiallelic 12415 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 349380 INDEL_multiallelic 2730 99 hg38 16 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 737178 SNP_multiallelic 12392 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 32264979 SNP_biallelic 660068 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3754756 INDEL_biallelic 52164 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 848588 SNP_multiallelic 12409 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 329146 INDEL_multiallelic 2729 85 hg38 16 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 293578 INDEL_multiallelic 2720 85 hg38 16 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 18360601 SNP_biallelic 408354 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2521082 INDEL_biallelic 37536 64 hg38 16 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 784719 SNP_multiallelic 12387 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 22281244 SNP_biallelic 443210 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2940517 INDEL_biallelic 37972 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 317229 INDEL_multiallelic 2720 96 hg38 16 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 28918406 SNP_biallelic 568536 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3621406 INDEL_biallelic 47669 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 828689 SNP_multiallelic 12406 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 334813 INDEL_multiallelic 2730 104 hg38 16 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 22788055 SNP_biallelic 445410 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2989724 INDEL_biallelic 37545 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 796059 SNP_multiallelic 12391 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 324314 INDEL_multiallelic 2721 102 hg38 16 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 22797397 SNP_biallelic 436233 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3014380 INDEL_biallelic 37294 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 799592 SNP_multiallelic 12392 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 327538 INDEL_multiallelic 2721 107 hg38 16 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 35232461 SNP_biallelic 662599 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4171684 INDEL_biallelic 53320 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 912276 SNP_multiallelic 12410 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/pop/16_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 362337 INDEL_multiallelic 2733 108 hg38 16 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_SNP_biallelic.no_monomorphic.vcf.gz 72299200 SNP_biallelic 731054 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7905515 INDEL_biallelic 46681 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_SNP_biallelic.no_monomorphic.vcf.gz 64722027 SNP_biallelic 845493 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7017672 INDEL_biallelic 56635 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_SNP_biallelic.no_monomorphic.vcf.gz 67323864 SNP_biallelic 723748 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7177299 INDEL_biallelic 41509 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_SNP_biallelic.no_monomorphic.vcf.gz 146733184 SNP_biallelic 1285679 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13360894 INDEL_biallelic 68028 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_SNP_biallelic.no_monomorphic.vcf.gz 76187821 SNP_biallelic 814194 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7892452 INDEL_biallelic 46875 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1503927 SNP_multiallelic 12411 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 714012 INDEL_multiallelic 2724 503 hg38 16 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1295076 SNP_multiallelic 12416 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 584874 INDEL_multiallelic 2732 347 hg38 16 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1443008 SNP_multiallelic 12406 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 685732 INDEL_multiallelic 2725 504 hg38 16 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2292599 SNP_multiallelic 12434 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1034010 INDEL_multiallelic 2735 661 hg38 16 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1514697 SNP_multiallelic 12406 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/16/16_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 714801 INDEL_multiallelic 2725 489 hg38 16 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 315972 INDEL_multiallelic 2778 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 318617 INDEL_multiallelic 2780 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 30872473 SNP_biallelic 615392 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 4268495 INDEL_biallelic 57600 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 656754 SNP_multiallelic 9000 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 353666 INDEL_multiallelic 2804 96 hg38 17 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2721775 INDEL_biallelic 34466 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2721619 INDEL_biallelic 34354 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 24058341 SNP_biallelic 543290 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3486108 INDEL_biallelic 53886 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 573834 SNP_multiallelic 8997 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 301126 INDEL_multiallelic 2803 61 hg38 17 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 574648 SNP_multiallelic 8974 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 315591 INDEL_multiallelic 2778 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18281646 SNP_biallelic 379483 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2867514 INDEL_biallelic 38600 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 565854 SNP_multiallelic 8971 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 307970 INDEL_multiallelic 2783 86 hg38 17 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3418749 INDEL_biallelic 46336 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15120575 SNP_biallelic 306569 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2556617 INDEL_biallelic 33270 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 558466 SNP_multiallelic 8970 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 304845 INDEL_multiallelic 2780 93 hg38 17 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16529010 SNP_biallelic 330084 103 hg38 17 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 17631709 SNP_biallelic 345198 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2914990 INDEL_biallelic 37163 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 579423 SNP_multiallelic 8976 99 hg38 17 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 573124 SNP_multiallelic 8967 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16068804 SNP_biallelic 318819 105 hg38 17 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 590023 SNP_multiallelic 8975 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22066618 SNP_biallelic 448212 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 592847 SNP_multiallelic 8989 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 323835 INDEL_multiallelic 2792 94 hg38 17 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 31849639 SNP_biallelic 597637 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 379299 INDEL_multiallelic 2804 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 28612205 SNP_biallelic 554514 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 4144787 INDEL_biallelic 54443 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 660657 SNP_multiallelic 8996 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 357664 INDEL_multiallelic 2801 99 hg38 17 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4442089 INDEL_biallelic 55412 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 331002 INDEL_multiallelic 2786 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 3062089 INDEL_biallelic 38728 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16065931 SNP_biallelic 305710 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2838587 INDEL_biallelic 36001 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 577048 SNP_multiallelic 8973 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 317413 INDEL_multiallelic 2778 99 hg38 17 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 691302 SNP_multiallelic 9007 113 hg38 17 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16373473 SNP_biallelic 324182 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2781715 INDEL_biallelic 36369 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 568118 SNP_multiallelic 8972 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 309174 INDEL_multiallelic 2778 91 hg38 17 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 596268 SNP_multiallelic 8977 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 19926394 SNP_biallelic 386138 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 18654865 SNP_biallelic 360657 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 3041759 INDEL_biallelic 38289 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 590665 SNP_multiallelic 8975 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 327282 INDEL_multiallelic 2782 103 hg38 17 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 3191640 INDEL_biallelic 40331 107 hg38 17 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 526630 SNP_multiallelic 8974 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19146397 SNP_biallelic 377579 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 328027 INDEL_multiallelic 2782 102 hg38 17 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 280433 INDEL_multiallelic 2786 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 16450163 SNP_biallelic 347938 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15793025 SNP_biallelic 310966 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2747981 INDEL_biallelic 34611 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 574250 SNP_multiallelic 8973 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 317041 INDEL_multiallelic 2782 104 hg38 17 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 16426975 SNP_biallelic 332096 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2706541 INDEL_biallelic 34662 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 567758 SNP_multiallelic 8970 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 312785 INDEL_multiallelic 2783 99 hg38 17 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2729945 INDEL_biallelic 38015 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 30632786 SNP_biallelic 603735 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 4212027 INDEL_biallelic 55446 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 662099 SNP_multiallelic 9007 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 356916 INDEL_multiallelic 2803 99 hg38 17 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 548384 SNP_multiallelic 8974 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27803714 SNP_biallelic 571347 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3907372 INDEL_biallelic 54392 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 632085 SNP_multiallelic 8997 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 335994 INDEL_multiallelic 2801 85 hg38 17 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 296731 INDEL_multiallelic 2781 85 hg38 17 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 15797241 SNP_biallelic 354629 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2636408 INDEL_biallelic 39633 64 hg38 17 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 581797 SNP_multiallelic 8978 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 18842523 SNP_biallelic 378185 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 3019769 INDEL_biallelic 39245 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 320781 INDEL_multiallelic 2782 96 hg38 17 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 24588249 SNP_biallelic 485148 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3736370 INDEL_biallelic 49363 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 617635 SNP_multiallelic 8993 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 339812 INDEL_multiallelic 2793 104 hg38 17 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 19402672 SNP_biallelic 383674 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 3074297 INDEL_biallelic 38924 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 589733 SNP_multiallelic 8973 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 329210 INDEL_multiallelic 2786 102 hg38 17 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 19641871 SNP_biallelic 380555 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 3116304 INDEL_biallelic 38815 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 594173 SNP_multiallelic 8982 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 329861 INDEL_multiallelic 2780 107 hg38 17 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 30332451 SNP_biallelic 572639 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 4343232 INDEL_biallelic 55511 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 680399 SNP_multiallelic 8999 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/pop/17_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 369634 INDEL_multiallelic 2802 108 hg38 17 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_SNP_biallelic.no_monomorphic.vcf.gz 62244665 SNP_biallelic 632600 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 8183712 INDEL_biallelic 48165 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_SNP_biallelic.no_monomorphic.vcf.gz 55381335 SNP_biallelic 721638 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 7273188 INDEL_biallelic 58372 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_SNP_biallelic.no_monomorphic.vcf.gz 57206299 SNP_biallelic 620613 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 7337679 INDEL_biallelic 42659 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_SNP_biallelic.no_monomorphic.vcf.gz 127081922 SNP_biallelic 1110773 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13982750 INDEL_biallelic 70835 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_SNP_biallelic.no_monomorphic.vcf.gz 65036932 SNP_biallelic 696786 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 8130549 INDEL_biallelic 48076 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1109336 SNP_multiallelic 8994 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 719035 INDEL_multiallelic 2793 503 hg38 17 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 959407 SNP_multiallelic 9001 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 592903 INDEL_multiallelic 2799 347 hg38 17 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1055060 SNP_multiallelic 8987 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 684998 INDEL_multiallelic 2791 504 hg38 17 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1703416 SNP_multiallelic 9026 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1060327 INDEL_multiallelic 2814 661 hg38 17 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1111659 SNP_multiallelic 8994 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/17/17_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 722835 INDEL_multiallelic 2796 489 hg38 17 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 569496 SNP_multiallelic 8647 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 565806 SNP_multiallelic 8643 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 30879880 SNP_biallelic 616752 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3915311 INDEL_biallelic 54042 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 636539 SNP_multiallelic 8659 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 351721 INDEL_multiallelic 2767 96 hg38 18 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 323488 INDEL_multiallelic 2760 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 323124 INDEL_multiallelic 2761 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 24180868 SNP_biallelic 549584 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 3202258 INDEL_biallelic 50449 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 557918 SNP_multiallelic 8658 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 299479 INDEL_multiallelic 2766 61 hg38 18 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2493847 INDEL_biallelic 32232 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2502620 INDEL_biallelic 32335 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 18891322 SNP_biallelic 393065 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2642947 INDEL_biallelic 36297 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 556691 SNP_multiallelic 8648 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 312352 INDEL_multiallelic 2763 86 hg38 18 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 565833 SNP_multiallelic 8647 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 324160 INDEL_multiallelic 2760 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 15771210 SNP_biallelic 321430 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2347425 INDEL_biallelic 31154 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 551072 SNP_multiallelic 8644 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 311497 INDEL_multiallelic 2761 93 hg38 18 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 3093585 INDEL_biallelic 42719 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 18235697 SNP_biallelic 359069 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2653452 INDEL_biallelic 34586 99 hg38 18 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 17374411 SNP_biallelic 348311 103 hg38 18 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 16849473 SNP_biallelic 335390 105 hg38 18 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22178050 SNP_biallelic 451326 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 579676 SNP_multiallelic 8653 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 326012 INDEL_multiallelic 2763 94 hg38 18 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 28851867 SNP_biallelic 561756 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3797169 INDEL_biallelic 51027 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 642420 SNP_multiallelic 8663 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 356478 INDEL_multiallelic 2771 99 hg38 18 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 32143626 SNP_biallelic 604480 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 16693930 SNP_biallelic 321041 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2581173 INDEL_biallelic 33456 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 567089 SNP_multiallelic 8642 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 321694 INDEL_multiallelic 2757 99 hg38 18 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 4074137 INDEL_biallelic 52000 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 334972 INDEL_multiallelic 2759 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 580712 SNP_multiallelic 8652 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16982992 SNP_biallelic 338623 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2542036 INDEL_biallelic 33913 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 558256 SNP_multiallelic 8646 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 313500 INDEL_multiallelic 2759 91 hg38 18 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 20213195 SNP_biallelic 391400 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 19075941 SNP_biallelic 369352 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2762449 INDEL_biallelic 35451 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 579244 SNP_multiallelic 8647 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 331172 INDEL_multiallelic 2761 103 hg38 18 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 672626 SNP_multiallelic 8663 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 378062 INDEL_multiallelic 2769 113 hg38 18 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2813391 INDEL_biallelic 36379 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2878752 INDEL_biallelic 36986 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 586338 SNP_multiallelic 8647 107 hg38 18 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 542853 SNP_multiallelic 8646 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 19969283 SNP_biallelic 395010 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 332020 INDEL_multiallelic 2762 102 hg38 18 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 303977 INDEL_multiallelic 2761 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 16276855 SNP_biallelic 320653 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2476918 INDEL_biallelic 31647 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 566123 SNP_multiallelic 8648 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 325349 INDEL_multiallelic 2762 104 hg38 18 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 324724 INDEL_multiallelic 2761 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 17190205 SNP_biallelic 349111 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2484548 INDEL_biallelic 32507 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 560216 SNP_multiallelic 8647 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 319535 INDEL_multiallelic 2761 99 hg38 18 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 31019761 SNP_biallelic 614073 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3881132 INDEL_biallelic 52337 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 642008 SNP_multiallelic 8662 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 356507 INDEL_multiallelic 2767 99 hg38 18 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27910088 SNP_biallelic 575043 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3589727 INDEL_biallelic 51045 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 613632 SNP_multiallelic 8660 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 334725 INDEL_multiallelic 2767 85 hg38 18 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 17838669 SNP_biallelic 379505 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 16836985 SNP_biallelic 381631 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2463946 INDEL_biallelic 37747 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 518770 SNP_multiallelic 8649 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 284925 INDEL_multiallelic 2760 64 hg38 18 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2571674 INDEL_biallelic 36614 85 hg38 18 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 19540923 SNP_biallelic 393876 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2761354 INDEL_biallelic 36654 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 570463 SNP_multiallelic 8648 96 hg38 18 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 25646658 SNP_biallelic 508655 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3452671 INDEL_biallelic 46619 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 605699 SNP_multiallelic 8650 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 343752 INDEL_multiallelic 2763 104 hg38 18 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 20069857 SNP_biallelic 397065 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2828597 INDEL_biallelic 36590 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 581144 SNP_multiallelic 8652 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 332899 INDEL_multiallelic 2761 102 hg38 18 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 19705171 SNP_biallelic 381162 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2800685 INDEL_biallelic 35583 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 583031 SNP_multiallelic 8648 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 334352 INDEL_multiallelic 2760 107 hg38 18 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 30529422 SNP_biallelic 578455 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3986390 INDEL_biallelic 52258 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 662638 SNP_multiallelic 8664 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/pop/18_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 368677 INDEL_multiallelic 2768 108 hg38 18 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_SNP_biallelic.no_monomorphic.vcf.gz 63042457 SNP_biallelic 620488 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7339388 INDEL_biallelic 44153 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_SNP_biallelic.no_monomorphic.vcf.gz 57392776 SNP_biallelic 737088 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6686842 INDEL_biallelic 55371 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_SNP_biallelic.no_monomorphic.vcf.gz 59576607 SNP_biallelic 622842 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6711459 INDEL_biallelic 39939 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_SNP_biallelic.no_monomorphic.vcf.gz 127969688 SNP_biallelic 1091871 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 12782701 INDEL_biallelic 66535 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_SNP_biallelic.no_monomorphic.vcf.gz 66793054 SNP_biallelic 696782 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 7391333 INDEL_biallelic 45011 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1108183 SNP_multiallelic 8656 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 737559 INDEL_multiallelic 2763 503 hg38 18 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 957319 SNP_multiallelic 8661 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 609865 INDEL_multiallelic 2765 347 hg38 18 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1064428 SNP_multiallelic 8656 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 717043 INDEL_multiallelic 2764 504 hg38 18 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1670591 SNP_multiallelic 8675 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1064397 INDEL_multiallelic 2773 661 hg38 18 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1109140 SNP_multiallelic 8660 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/18/18_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 742779 INDEL_multiallelic 2767 489 hg38 18 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 272141 INDEL_multiallelic 2408 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 274900 INDEL_multiallelic 2411 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 25204640 SNP_biallelic 501542 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3419565 INDEL_biallelic 45832 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 562755 SNP_multiallelic 7711 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 302508 INDEL_multiallelic 2417 96 hg38 19 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 2257073 INDEL_biallelic 28489 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2279247 INDEL_biallelic 28779 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 19869913 SNP_biallelic 449253 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2818570 INDEL_biallelic 43422 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 492883 SNP_multiallelic 7705 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 258477 INDEL_multiallelic 2414 61 hg38 19 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 497231 SNP_multiallelic 7689 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 271908 INDEL_multiallelic 2406 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 15436796 SNP_biallelic 320021 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2370261 INDEL_biallelic 31771 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 494320 SNP_multiallelic 7699 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 265394 INDEL_multiallelic 2410 86 hg38 19 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2802484 INDEL_biallelic 37829 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 12820901 SNP_biallelic 260622 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 2135604 INDEL_biallelic 27771 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 484547 SNP_multiallelic 7690 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 261678 INDEL_multiallelic 2404 93 hg38 19 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 13964547 SNP_biallelic 278985 103 hg38 19 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 15025232 SNP_biallelic 294554 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2413036 INDEL_biallelic 30722 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 502989 SNP_multiallelic 7694 99 hg38 19 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 496851 SNP_multiallelic 7688 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 13554792 SNP_biallelic 268952 105 hg38 19 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 515430 SNP_multiallelic 7690 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 18591537 SNP_biallelic 377923 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 513719 SNP_multiallelic 7701 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 278222 INDEL_multiallelic 2410 94 hg38 19 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 26093685 SNP_biallelic 488368 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 323902 INDEL_multiallelic 2416 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 23672816 SNP_biallelic 458956 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3343673 INDEL_biallelic 43650 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 566900 SNP_multiallelic 7704 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 306358 INDEL_multiallelic 2415 99 hg38 19 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3566116 INDEL_biallelic 44060 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 284194 INDEL_multiallelic 2409 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2523866 INDEL_biallelic 31764 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 13561220 SNP_biallelic 258591 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2321417 INDEL_biallelic 29366 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 500298 SNP_multiallelic 7692 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 273200 INDEL_multiallelic 2411 99 hg38 19 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 592383 SNP_multiallelic 7713 113 hg38 19 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 13885754 SNP_biallelic 274995 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2295137 INDEL_biallelic 29909 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 493473 SNP_multiallelic 7689 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 267362 INDEL_multiallelic 2410 91 hg38 19 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 517239 SNP_multiallelic 7692 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 16461313 SNP_biallelic 317920 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 15766832 SNP_biallelic 305025 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2513123 INDEL_biallelic 31518 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 515714 SNP_multiallelic 7694 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 281583 INDEL_multiallelic 2412 103 hg38 19 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2591771 INDEL_biallelic 32492 107 hg38 19 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 458368 SNP_multiallelic 7697 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 16140660 SNP_biallelic 317219 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 281861 INDEL_multiallelic 2411 102 hg38 19 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 243260 INDEL_multiallelic 2411 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 13936673 SNP_biallelic 295021 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 13264257 SNP_biallelic 261304 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2270919 INDEL_biallelic 28546 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 496610 SNP_multiallelic 7691 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 272734 INDEL_multiallelic 2407 104 hg38 19 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 13900458 SNP_biallelic 281462 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2257626 INDEL_biallelic 28923 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 492075 SNP_multiallelic 7692 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 268908 INDEL_multiallelic 2408 99 hg38 19 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2251568 INDEL_biallelic 31231 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 24975004 SNP_biallelic 490249 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3388701 INDEL_biallelic 44322 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 567804 SNP_multiallelic 7707 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 307463 INDEL_multiallelic 2413 99 hg38 19 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 474781 SNP_multiallelic 7693 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 22988113 SNP_biallelic 471723 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 3157968 INDEL_biallelic 43696 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 543525 SNP_multiallelic 7708 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 287689 INDEL_multiallelic 2413 85 hg38 19 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 256368 INDEL_multiallelic 2410 85 hg38 19 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 13943712 SNP_biallelic 315172 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 2223384 INDEL_biallelic 33524 64 hg38 19 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 506792 SNP_multiallelic 7694 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 15851924 SNP_biallelic 317688 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2488488 INDEL_biallelic 32237 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 276329 INDEL_multiallelic 2412 96 hg38 19 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 20502845 SNP_biallelic 405607 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 3030348 INDEL_biallelic 39859 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 533471 SNP_multiallelic 7706 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 291536 INDEL_multiallelic 2416 104 hg38 19 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 16336464 SNP_biallelic 321664 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2533939 INDEL_biallelic 31845 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 516250 SNP_multiallelic 7694 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 282519 INDEL_multiallelic 2411 102 hg38 19 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 16373866 SNP_biallelic 316318 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2557258 INDEL_biallelic 31776 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 517540 SNP_multiallelic 7692 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 284964 INDEL_multiallelic 2410 107 hg38 19 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 25105433 SNP_biallelic 474482 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3507632 INDEL_biallelic 44587 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 585588 SNP_multiallelic 7708 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/pop/19_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 317398 INDEL_multiallelic 2414 108 hg38 19 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_SNP_biallelic.no_monomorphic.vcf.gz 51557410 SNP_biallelic 512798 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 6670213 INDEL_biallelic 38662 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_SNP_biallelic.no_monomorphic.vcf.gz 46343928 SNP_biallelic 598221 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 5934117 INDEL_biallelic 47143 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_SNP_biallelic.no_monomorphic.vcf.gz 47891170 SNP_biallelic 505951 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6109806 INDEL_biallelic 35046 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_SNP_biallelic.no_monomorphic.vcf.gz 104042054 SNP_biallelic 885187 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 11256862 INDEL_biallelic 55827 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_SNP_biallelic.no_monomorphic.vcf.gz 54533703 SNP_biallelic 570541 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 6720619 INDEL_biallelic 39220 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 979640 SNP_multiallelic 7707 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 617249 INDEL_multiallelic 2416 503 hg38 19 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 840572 SNP_multiallelic 7714 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 509287 INDEL_multiallelic 2418 347 hg38 19 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 928968 SNP_multiallelic 7701 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 587918 INDEL_multiallelic 2412 504 hg38 19 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1467254 SNP_multiallelic 7726 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 905459 INDEL_multiallelic 2420 661 hg38 19 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 989077 SNP_multiallelic 7707 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/19/19_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 619911 INDEL_multiallelic 2415 489 hg38 19 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 239582 INDEL_multiallelic 2084 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 242264 INDEL_multiallelic 2086 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 24285063 SNP_biallelic 485991 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3002767 INDEL_biallelic 41094 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 490679 SNP_multiallelic 6839 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 266608 INDEL_multiallelic 2094 96 hg38 20 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1865802 INDEL_biallelic 23692 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1869488 INDEL_biallelic 23691 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 18969612 SNP_biallelic 430932 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2456005 INDEL_biallelic 38322 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 430868 SNP_multiallelic 6840 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 227568 INDEL_multiallelic 2093 61 hg38 20 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 430550 SNP_multiallelic 6830 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 240007 INDEL_multiallelic 2083 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 14427603 SNP_biallelic 301953 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1992350 INDEL_biallelic 26983 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 428060 SNP_multiallelic 6831 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 233899 INDEL_multiallelic 2086 86 hg38 20 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2398956 INDEL_biallelic 32876 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 11870845 SNP_biallelic 242878 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1758783 INDEL_biallelic 22920 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 420298 SNP_multiallelic 6830 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 231131 INDEL_multiallelic 2083 93 hg38 20 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 12982662 SNP_biallelic 261861 103 hg38 20 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 13986194 SNP_biallelic 276589 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2015841 INDEL_biallelic 25836 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 437540 SNP_multiallelic 6832 99 hg38 20 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 430224 SNP_multiallelic 6832 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 12636838 SNP_biallelic 252971 105 hg38 20 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 446263 SNP_multiallelic 6831 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 17702998 SNP_biallelic 363162 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 446407 SNP_multiallelic 6835 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 245851 INDEL_multiallelic 2090 94 hg38 20 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 25344671 SNP_biallelic 476623 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 286905 INDEL_multiallelic 2093 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 22822611 SNP_biallelic 445179 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 2919259 INDEL_biallelic 38845 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 493676 SNP_multiallelic 6832 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 269939 INDEL_multiallelic 2092 99 hg38 20 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3130148 INDEL_biallelic 39574 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 250948 INDEL_multiallelic 2085 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2120716 INDEL_biallelic 27005 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 12723576 SNP_biallelic 245358 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1951395 INDEL_biallelic 24884 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 435624 SNP_multiallelic 6832 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 240784 INDEL_multiallelic 2085 99 hg38 20 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 516988 SNP_multiallelic 6838 113 hg38 20 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 13054130 SNP_biallelic 261978 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1931332 INDEL_biallelic 25452 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 429361 SNP_multiallelic 6833 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 235662 INDEL_multiallelic 2085 91 hg38 20 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 450745 SNP_multiallelic 6836 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 15573879 SNP_biallelic 303150 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 14744542 SNP_biallelic 287746 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2101205 INDEL_biallelic 26621 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 445713 SNP_multiallelic 6831 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 247775 INDEL_multiallelic 2083 103 hg38 20 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2189387 INDEL_biallelic 27738 107 hg38 20 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 397006 SNP_multiallelic 6828 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 15221616 SNP_biallelic 302639 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 248121 INDEL_multiallelic 2086 102 hg38 20 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 212685 INDEL_multiallelic 2086 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 13209617 SNP_biallelic 282766 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 12275486 SNP_biallelic 243186 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1872517 INDEL_biallelic 23546 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 432049 SNP_multiallelic 6835 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 240697 INDEL_multiallelic 2083 104 hg38 20 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 12999125 SNP_biallelic 265621 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1865197 INDEL_biallelic 23945 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 426708 SNP_multiallelic 6830 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 236919 INDEL_multiallelic 2081 99 hg38 20 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1895360 INDEL_biallelic 26542 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 24232930 SNP_biallelic 478618 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 2967332 INDEL_biallelic 39551 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 496038 SNP_multiallelic 6841 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 270202 INDEL_multiallelic 2093 99 hg38 20 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 414088 SNP_multiallelic 6835 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 21992889 SNP_biallelic 453353 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2752845 INDEL_biallelic 38777 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 473440 SNP_multiallelic 6833 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 254211 INDEL_multiallelic 2092 85 hg38 20 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 226248 INDEL_multiallelic 2085 85 hg38 20 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 12635697 SNP_biallelic 287901 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1834044 INDEL_biallelic 27709 64 hg38 20 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 439715 SNP_multiallelic 6835 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 14923530 SNP_biallelic 301919 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2091912 INDEL_biallelic 27372 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 243247 INDEL_multiallelic 2087 96 hg38 20 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 19748861 SNP_biallelic 392150 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2626993 INDEL_biallelic 35015 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 464603 SNP_multiallelic 6836 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 258228 INDEL_multiallelic 2091 104 hg38 20 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 15262900 SNP_biallelic 303442 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2125937 INDEL_biallelic 27032 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 446407 SNP_multiallelic 6831 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 248019 INDEL_multiallelic 2086 102 hg38 20 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 15355207 SNP_biallelic 298774 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2145213 INDEL_biallelic 26867 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 449818 SNP_multiallelic 6833 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 251041 INDEL_multiallelic 2087 107 hg38 20 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 24093195 SNP_biallelic 456844 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3072973 INDEL_biallelic 39900 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 509074 SNP_multiallelic 6840 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/pop/20_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 279262 INDEL_multiallelic 2093 108 hg38 20 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_SNP_biallelic.no_monomorphic.vcf.gz 49022741 SNP_biallelic 489019 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 5614318 INDEL_biallelic 33228 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_SNP_biallelic.no_monomorphic.vcf.gz 44586010 SNP_biallelic 580035 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 5098101 INDEL_biallelic 41875 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_SNP_biallelic.no_monomorphic.vcf.gz 45466157 SNP_biallelic 487696 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 5055426 INDEL_biallelic 29700 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_SNP_biallelic.no_monomorphic.vcf.gz 100810801 SNP_biallelic 866246 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 9804566 INDEL_biallelic 50717 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_SNP_biallelic.no_monomorphic.vcf.gz 51602381 SNP_biallelic 547012 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 5620746 INDEL_biallelic 33812 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 839439 SNP_multiallelic 6841 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 545855 INDEL_multiallelic 2090 503 hg38 20 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 723529 SNP_multiallelic 6846 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 451030 INDEL_multiallelic 2094 347 hg38 20 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 789978 SNP_multiallelic 6841 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 519364 INDEL_multiallelic 2087 504 hg38 20 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 1268807 SNP_multiallelic 6848 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 799769 INDEL_multiallelic 2095 661 hg38 20 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 842255 SNP_multiallelic 6842 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/20/20_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 546597 INDEL_multiallelic 2090 489 hg38 20 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 179169 INDEL_multiallelic 1516 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 180026 INDEL_multiallelic 1514 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 15492110 SNP_biallelic 306471 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 2086449 INDEL_biallelic 28844 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 365444 SNP_multiallelic 4853 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 195214 INDEL_multiallelic 1520 96 hg38 21 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1321385 INDEL_biallelic 17095 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1320056 INDEL_biallelic 17084 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 12101997 SNP_biallelic 272435 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1708929 INDEL_biallelic 26982 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 319398 SNP_multiallelic 4855 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 165826 INDEL_multiallelic 1515 61 hg38 21 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 325110 SNP_multiallelic 4845 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 179721 INDEL_multiallelic 1515 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 9270770 SNP_biallelic 190815 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1394628 INDEL_biallelic 19240 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 319245 SNP_multiallelic 4849 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 173993 INDEL_multiallelic 1518 86 hg38 21 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1649043 INDEL_biallelic 22943 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 7873495 SNP_biallelic 158306 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1262086 INDEL_biallelic 16830 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 316864 SNP_multiallelic 4846 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 173450 INDEL_multiallelic 1515 93 hg38 21 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 8464051 SNP_biallelic 167248 103 hg38 21 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 8935167 SNP_biallelic 173995 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1398911 INDEL_biallelic 18331 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 325149 SNP_multiallelic 4847 99 hg38 21 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 326007 SNP_multiallelic 4848 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 8261523 SNP_biallelic 162096 105 hg38 21 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 333173 SNP_multiallelic 4849 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 11130259 SNP_biallelic 225159 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 332005 SNP_multiallelic 4847 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 181433 INDEL_multiallelic 1519 94 hg38 21 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 16200576 SNP_biallelic 302002 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 209621 INDEL_multiallelic 1519 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 14646195 SNP_biallelic 283023 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 2038257 INDEL_biallelic 27490 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 369495 SNP_multiallelic 4854 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 197773 INDEL_multiallelic 1518 99 hg38 21 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 2176985 INDEL_biallelic 27868 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 186493 INDEL_multiallelic 1518 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1483950 INDEL_biallelic 19302 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 8223257 SNP_biallelic 156342 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1357936 INDEL_biallelic 17695 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 324099 SNP_multiallelic 4847 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 179375 INDEL_multiallelic 1516 99 hg38 21 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 385921 SNP_multiallelic 4854 113 hg38 21 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 8396796 SNP_biallelic 165883 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1336160 INDEL_biallelic 17965 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 319298 SNP_multiallelic 4846 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 174318 INDEL_multiallelic 1516 91 hg38 21 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 335890 SNP_multiallelic 4848 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 10237448 SNP_biallelic 197533 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 9418575 SNP_biallelic 180630 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1464085 INDEL_biallelic 18957 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 333316 SNP_multiallelic 4849 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 184282 INDEL_multiallelic 1517 103 hg38 21 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1539476 INDEL_biallelic 20024 107 hg38 21 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 295061 SNP_multiallelic 4846 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 9816615 SNP_biallelic 192610 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 184226 INDEL_multiallelic 1515 102 hg38 21 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 156984 INDEL_multiallelic 1513 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 8434395 SNP_biallelic 178679 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 8021206 SNP_biallelic 156131 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1316745 INDEL_biallelic 16962 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 325418 SNP_multiallelic 4845 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 179191 INDEL_multiallelic 1513 104 hg38 21 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 8547093 SNP_biallelic 171492 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1327377 INDEL_biallelic 17419 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 321777 SNP_multiallelic 4846 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 177682 INDEL_multiallelic 1515 99 hg38 21 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1325802 INDEL_biallelic 19022 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 15619835 SNP_biallelic 306624 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 2075670 INDEL_biallelic 28069 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 369544 SNP_multiallelic 4857 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 197414 INDEL_multiallelic 1517 99 hg38 21 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 307098 SNP_multiallelic 4847 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 14210085 SNP_biallelic 290452 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1935044 INDEL_biallelic 27606 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 353168 SNP_multiallelic 4854 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 185728 INDEL_multiallelic 1518 85 hg38 21 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 166179 INDEL_multiallelic 1519 85 hg38 21 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 8110414 SNP_biallelic 182877 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1277113 INDEL_biallelic 19697 64 hg38 21 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 328795 SNP_multiallelic 4851 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 9664492 SNP_biallelic 193045 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1467647 INDEL_biallelic 19603 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 180354 INDEL_multiallelic 1514 96 hg38 21 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 12772831 SNP_biallelic 250986 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1838582 INDEL_biallelic 24965 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 347934 SNP_multiallelic 4848 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 190809 INDEL_multiallelic 1519 104 hg38 21 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 9812370 SNP_biallelic 192182 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1483927 INDEL_biallelic 19262 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 333651 SNP_multiallelic 4857 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 185120 INDEL_multiallelic 1518 102 hg38 21 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 9832959 SNP_biallelic 188340 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1493061 INDEL_biallelic 19109 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 335181 SNP_multiallelic 4847 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 186044 INDEL_multiallelic 1515 107 hg38 21 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 15467689 SNP_biallelic 290639 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 2135026 INDEL_biallelic 28089 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 381128 SNP_multiallelic 4853 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/pop/21_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 204745 INDEL_multiallelic 1519 108 hg38 21 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_SNP_biallelic.no_monomorphic.vcf.gz 31491833 SNP_biallelic 308738 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3885229 INDEL_biallelic 23861 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_SNP_biallelic.no_monomorphic.vcf.gz 28095643 SNP_biallelic 358850 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3501827 INDEL_biallelic 29268 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_SNP_biallelic.no_monomorphic.vcf.gz 29398877 SNP_biallelic 302412 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3552467 INDEL_biallelic 21125 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_SNP_biallelic.no_monomorphic.vcf.gz 64029265 SNP_biallelic 539979 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6773349 INDEL_biallelic 35466 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_SNP_biallelic.no_monomorphic.vcf.gz 32895176 SNP_biallelic 338546 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3894347 INDEL_biallelic 23862 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 637320 SNP_multiallelic 4857 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 411356 INDEL_multiallelic 1521 503 hg38 21 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 547070 SNP_multiallelic 4857 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 335709 INDEL_multiallelic 1524 347 hg38 21 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 619489 SNP_multiallelic 4856 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 398671 INDEL_multiallelic 1525 504 hg38 21 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 967056 SNP_multiallelic 4868 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 588593 INDEL_multiallelic 1525 661 hg38 21 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 642144 SNP_multiallelic 4862 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/21/21_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 412627 INDEL_multiallelic 1522 489 hg38 21 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 156153 INDEL_multiallelic 1343 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 157432 INDEL_multiallelic 1343 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 15333343 SNP_biallelic 302187 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 1994202 INDEL_biallelic 26788 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 367602 SNP_multiallelic 5241 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 170450 INDEL_multiallelic 1344 96 hg38 22 AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1286150 INDEL_biallelic 16069 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 1304561 INDEL_biallelic 16322 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 12071993 SNP_biallelic 270667 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 1632136 INDEL_biallelic 25113 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 321215 SNP_multiallelic 5230 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 145998 INDEL_multiallelic 1345 61 hg38 22 AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 324119 SNP_multiallelic 5225 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 156356 INDEL_multiallelic 1344 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 9420980 SNP_biallelic 193189 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 1375635 INDEL_biallelic 18313 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 322118 SNP_multiallelic 5231 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 152445 INDEL_multiallelic 1343 86 hg38 22 SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 1596271 INDEL_biallelic 21376 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 7823758 SNP_biallelic 156933 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1227617 INDEL_biallelic 15817 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 316220 SNP_multiallelic 5224 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 150445 INDEL_multiallelic 1341 93 hg38 22 EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 8510803 SNP_biallelic 167837 103 hg38 22 EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 9090419 SNP_biallelic 176288 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 1388157 INDEL_biallelic 17498 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 327419 SNP_multiallelic 5223 99 hg38 22 EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 324829 SNP_multiallelic 5226 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 8164501 SNP_biallelic 159417 105 hg38 22 EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 334343 SNP_multiallelic 5224 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 11069224 SNP_biallelic 222680 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 333213 SNP_multiallelic 5229 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 158557 INDEL_multiallelic 1343 94 hg38 22 AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 15960273 SNP_biallelic 295255 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 183511 INDEL_multiallelic 1347 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 14219534 SNP_biallelic 272383 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 1922537 INDEL_biallelic 25082 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 369384 SNP_multiallelic 5238 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 172347 INDEL_multiallelic 1345 99 hg38 22 AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 2071471 INDEL_biallelic 25688 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 161849 INDEL_multiallelic 1342 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 1463691 INDEL_biallelic 18312 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 8271707 SNP_biallelic 155807 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 1353114 INDEL_biallelic 16951 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 325798 SNP_multiallelic 5222 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 156560 INDEL_multiallelic 1344 99 hg38 22 EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 386306 SNP_multiallelic 5238 113 hg38 22 AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 8356744 SNP_biallelic 163692 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 1313800 INDEL_biallelic 16931 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 320277 SNP_multiallelic 5224 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 152323 INDEL_multiallelic 1342 91 hg38 22 EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 336007 SNP_multiallelic 5227 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 10052317 SNP_biallelic 192073 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 9628576 SNP_biallelic 184003 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 1454171 INDEL_biallelic 18143 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 335537 SNP_multiallelic 5229 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 160996 INDEL_multiallelic 1342 103 hg38 22 SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 1505140 INDEL_biallelic 18772 107 hg38 22 EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 296382 SNP_multiallelic 5223 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 9920161 SNP_biallelic 193311 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 161385 INDEL_multiallelic 1343 102 hg38 22 SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 138210 INDEL_multiallelic 1342 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 8567945 SNP_biallelic 180924 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 8120679 SNP_biallelic 157963 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 1300447 INDEL_biallelic 16170 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 325101 SNP_multiallelic 5225 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 156749 INDEL_multiallelic 1344 104 hg38 22 EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 8560889 SNP_biallelic 171499 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 1301616 INDEL_biallelic 16565 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 322259 SNP_multiallelic 5226 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 154670 INDEL_multiallelic 1342 99 hg38 22 EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 1302975 INDEL_biallelic 18075 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 15268219 SNP_biallelic 297366 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 1968253 INDEL_biallelic 25761 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 370037 SNP_multiallelic 5234 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 172579 INDEL_multiallelic 1349 99 hg38 22 AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 309236 SNP_multiallelic 5227 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 13856818 SNP_biallelic 281017 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 1827286 INDEL_biallelic 25314 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 354221 SNP_multiallelic 5240 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 162779 INDEL_multiallelic 1344 85 hg38 22 AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 146922 INDEL_multiallelic 1342 85 hg38 22 AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 7885185 SNP_biallelic 175333 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1224504 INDEL_biallelic 18159 64 hg38 22 AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 329303 SNP_multiallelic 5228 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 9678731 SNP_biallelic 192069 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 1433554 INDEL_biallelic 18432 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 157969 INDEL_multiallelic 1343 96 hg38 22 SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 12300629 SNP_biallelic 240264 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 1745816 INDEL_biallelic 22847 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 345672 SNP_multiallelic 5233 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 165778 INDEL_multiallelic 1344 104 hg38 22 AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 9974571 SNP_biallelic 194381 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 1468723 INDEL_biallelic 18390 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 335418 SNP_multiallelic 5228 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 161444 INDEL_multiallelic 1342 102 hg38 22 SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 9925064 SNP_biallelic 189344 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 1470957 INDEL_biallelic 18069 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 335653 SNP_multiallelic 5226 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 162492 INDEL_multiallelic 1344 107 hg38 22 EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 15065305 SNP_biallelic 280541 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 2019209 INDEL_biallelic 25662 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 380890 SNP_multiallelic 5237 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/pop/22_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 178674 INDEL_multiallelic 1345 108 hg38 22 AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_SNP_biallelic.no_monomorphic.vcf.gz 31294117 SNP_biallelic 308105 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 351790 INDEL_multiallelic 1345 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_SNP_biallelic.no_monomorphic.vcf.gz 29081628 SNP_biallelic 305506 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 3857664 INDEL_biallelic 22410 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 3499066 INDEL_biallelic 20180 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 289350 INDEL_multiallelic 1345 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_SNP_biallelic.no_monomorphic.vcf.gz 27658456 SNP_biallelic 354667 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 538008 SNP_multiallelic 5240 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_SNP_biallelic.no_monomorphic.vcf.gz 62436403 SNP_biallelic 533936 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 627385 SNP_multiallelic 5237 503 hg38 22 EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 3398195 INDEL_biallelic 27143 347 hg38 22 AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 598447 SNP_multiallelic 5232 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 336833 INDEL_multiallelic 1345 504 hg38 22 EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 6451076 INDEL_biallelic 32808 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 943363 SNP_multiallelic 5252 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 503107 INDEL_multiallelic 1351 661 hg38 22 AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_SNP_biallelic.no_monomorphic.vcf.gz 33101122 SNP_biallelic 343680 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 3861621 INDEL_biallelic 22496 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 633655 SNP_multiallelic 5238 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/22/22_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 354134 INDEL_multiallelic 1343 489 hg38 22 SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 330977 INDEL_multiallelic 2668 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_SNP_biallelic.no_monomorphic.vcf.gz 31870742 SNP_biallelic 611601 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 3302050 INDEL_biallelic 41189 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 673362 SNP_multiallelic 8771 96 hg38 X AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 566968 SNP_multiallelic 8771 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 22828824 SNP_biallelic 481797 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 26616427 SNP_biallelic 618303 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 2713708 INDEL_biallelic 41022 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 274346 INDEL_multiallelic 2668 61 hg38 X AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 14401106 SNP_biallelic 300453 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 2064099 INDEL_biallelic 28140 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 557421 SNP_multiallelic 8771 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 279048 INDEL_multiallelic 2668 86 hg38 X SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 13228012 SNP_biallelic 280916 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 1888920 INDEL_biallelic 25788 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 539279 SNP_multiallelic 8771 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 268537 INDEL_multiallelic 2668 93 hg38 X EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_INDEL_biallelic.no_monomorphic.vcf.gz 2639571 INDEL_biallelic 36640 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 17030376 SNP_biallelic 340951 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_INDEL_biallelic.no_monomorphic.vcf.gz 2151417 INDEL_biallelic 27993 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 569978 SNP_multiallelic 8771 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_CEU_INDEL_multiallelic.no_monomorphic.vcf.gz 284267 INDEL_multiallelic 2668 99 hg38 X EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 16071999 SNP_biallelic 323337 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_INDEL_biallelic.no_monomorphic.vcf.gz 2075873 INDEL_biallelic 26440 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 572344 SNP_multiallelic 8771 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHB_INDEL_multiallelic.no_monomorphic.vcf.gz 290130 INDEL_multiallelic 2668 103 hg38 X EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 15284190 SNP_biallelic 325499 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_INDEL_biallelic.no_monomorphic.vcf.gz 1958533 INDEL_biallelic 26330 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 551099 SNP_multiallelic 8771 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_CHS_INDEL_multiallelic.no_monomorphic.vcf.gz 273358 INDEL_multiallelic 2668 105 hg38 X EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 586345 SNP_multiallelic 8771 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_CLM_INDEL_multiallelic.no_monomorphic.vcf.gz 290047 INDEL_multiallelic 2668 94 hg38 X AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_SNP_multiallelic.no_monomorphic.vcf.gz 579963 SNP_multiallelic 8771 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 29675534 SNP_biallelic 577564 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_INDEL_biallelic.no_monomorphic.vcf.gz 3155120 INDEL_biallelic 39909 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 661412 SNP_multiallelic 8771 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_ESN_INDEL_multiallelic.no_monomorphic.vcf.gz 324102 INDEL_multiallelic 2668 99 hg38 X AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_INDEL_multiallelic.no_monomorphic.vcf.gz 294697 INDEL_multiallelic 2668 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 17002854 SNP_biallelic 328677 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_INDEL_biallelic.no_monomorphic.vcf.gz 2186478 INDEL_biallelic 27759 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_SNP_multiallelic.no_monomorphic.vcf.gz 581639 SNP_multiallelic 8771 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_FIN_INDEL_multiallelic.no_monomorphic.vcf.gz 290972 INDEL_multiallelic 2668 99 hg38 X EUR FIN /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_SNP_biallelic.no_monomorphic.vcf.gz 16309694 SNP_biallelic 335294 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_INDEL_biallelic.no_monomorphic.vcf.gz 2080043 INDEL_biallelic 27599 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_SNP_multiallelic.no_monomorphic.vcf.gz 562343 SNP_multiallelic 8771 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_GBR_INDEL_multiallelic.no_monomorphic.vcf.gz 279654 INDEL_multiallelic 2668 91 hg38 X EUR GBR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_SNP_biallelic.no_monomorphic.vcf.gz 15037450 SNP_biallelic 292430 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 2179225 INDEL_biallelic 27793 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_SNP_multiallelic.no_monomorphic.vcf.gz 578675 SNP_multiallelic 8771 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 293481 INDEL_multiallelic 2668 103 hg38 X SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_SNP_biallelic.no_monomorphic.vcf.gz 29209380 SNP_biallelic 564570 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 3144384 INDEL_biallelic 40069 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_SNP_multiallelic.no_monomorphic.vcf.gz 658346 SNP_multiallelic 8771 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 323397 INDEL_multiallelic 2668 113 hg38 X AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_SNP_biallelic.no_monomorphic.vcf.gz 18072342 SNP_biallelic 362681 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 2290063 INDEL_biallelic 30233 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_SNP_multiallelic.no_monomorphic.vcf.gz 578173 SNP_multiallelic 8771 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 288404 INDEL_multiallelic 2668 107 hg38 X EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_SNP_biallelic.no_monomorphic.vcf.gz 14607199 SNP_biallelic 285274 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 2183948 INDEL_biallelic 27752 102 hg38 X SAS ITU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_SNP_biallelic.no_monomorphic.vcf.gz 15262132 SNP_biallelic 304072 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_INDEL_biallelic.no_monomorphic.vcf.gz 2040503 INDEL_biallelic 25957 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_SNP_multiallelic.no_monomorphic.vcf.gz 573722 SNP_multiallelic 8771 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_JPT_INDEL_multiallelic.no_monomorphic.vcf.gz 289637 INDEL_multiallelic 2668 104 hg38 X EAS JPT /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_INDEL_biallelic.no_monomorphic.vcf.gz 2863012 INDEL_biallelic 38955 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_SNP_biallelic.no_monomorphic.vcf.gz 14838268 SNP_biallelic 294645 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_INDEL_biallelic.no_monomorphic.vcf.gz 2061203 INDEL_biallelic 26395 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_SNP_multiallelic.no_monomorphic.vcf.gz 569857 SNP_multiallelic 8771 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EAS_KHV_INDEL_multiallelic.no_monomorphic.vcf.gz 288794 INDEL_multiallelic 2668 99 hg38 X EAS KHV /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_SNP_multiallelic.no_monomorphic.vcf.gz 606251 SNP_multiallelic 8771 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_SNP_biallelic.no_monomorphic.vcf.gz 36040965 SNP_biallelic 685264 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_INDEL_biallelic.no_monomorphic.vcf.gz 3433934 INDEL_biallelic 41350 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_SNP_multiallelic.no_monomorphic.vcf.gz 694713 SNP_multiallelic 8771 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_LWK_INDEL_multiallelic.no_monomorphic.vcf.gz 341243 INDEL_multiallelic 2668 99 hg38 X AFR LWK /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_INDEL_multiallelic.no_monomorphic.vcf.gz 300732 INDEL_multiallelic 2668 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_SNP_biallelic.no_monomorphic.vcf.gz 27336700 SNP_biallelic 557223 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_INDEL_biallelic.no_monomorphic.vcf.gz 2968600 INDEL_biallelic 39461 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_SNP_multiallelic.no_monomorphic.vcf.gz 636733 SNP_multiallelic 8771 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_MSL_INDEL_multiallelic.no_monomorphic.vcf.gz 310996 INDEL_multiallelic 2668 85 hg38 X AFR MSL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_SNP_biallelic.no_monomorphic.vcf.gz 15726749 SNP_biallelic 381547 64 hg38 X AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_INDEL_biallelic.no_monomorphic.vcf.gz 1971951 INDEL_biallelic 31588 64 hg38 X AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_SNP_multiallelic.no_monomorphic.vcf.gz 500231 SNP_multiallelic 8771 64 hg38 X AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_MXL_INDEL_multiallelic.no_monomorphic.vcf.gz 241134 INDEL_multiallelic 2668 64 hg38 X AMR MXL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PEL_SNP_biallelic.no_monomorphic.vcf.gz 15992969 SNP_biallelic 361040 85 hg38 X AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PEL_INDEL_biallelic.no_monomorphic.vcf.gz 2177511 INDEL_biallelic 32326 85 hg38 X AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PEL_SNP_multiallelic.no_monomorphic.vcf.gz 539469 SNP_multiallelic 8771 85 hg38 X AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PEL_INDEL_multiallelic.no_monomorphic.vcf.gz 264430 INDEL_multiallelic 2668 85 hg38 X AMR PEL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_PJL_SNP_biallelic.no_monomorphic.vcf.gz 14872568 SNP_biallelic 300442 96 hg38 X SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_PJL_INDEL_biallelic.no_monomorphic.vcf.gz 2149315 INDEL_biallelic 28400 96 hg38 X SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_PJL_SNP_multiallelic.no_monomorphic.vcf.gz 566466 SNP_multiallelic 8771 96 hg38 X SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_PJL_INDEL_multiallelic.no_monomorphic.vcf.gz 283976 INDEL_multiallelic 2668 96 hg38 X SAS PJL /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AMR_PUR_SNP_biallelic.no_monomorphic.vcf.gz 25912364 SNP_biallelic 536988 104 hg38 X AMR PUR /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_STU_SNP_biallelic.no_monomorphic.vcf.gz 14751533 SNP_biallelic 284358 102 hg38 X SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_STU_INDEL_biallelic.no_monomorphic.vcf.gz 2227227 INDEL_biallelic 27834 102 hg38 X SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_STU_SNP_multiallelic.no_monomorphic.vcf.gz 589112 SNP_multiallelic 8771 102 hg38 X SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_SAS_STU_INDEL_multiallelic.no_monomorphic.vcf.gz 299914 INDEL_multiallelic 2668 102 hg38 X SAS STU /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_TSI_SNP_biallelic.no_monomorphic.vcf.gz 18849003 SNP_biallelic 361413 107 hg38 X EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_TSI_INDEL_biallelic.no_monomorphic.vcf.gz 2351776 INDEL_biallelic 29034 107 hg38 X EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_TSI_SNP_multiallelic.no_monomorphic.vcf.gz 600119 SNP_multiallelic 8771 107 hg38 X EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_EUR_TSI_INDEL_multiallelic.no_monomorphic.vcf.gz 304093 INDEL_multiallelic 2668 107 hg38 X EUR TSI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_YRI_SNP_biallelic.no_monomorphic.vcf.gz 33472107 SNP_biallelic 617659 108 hg38 X AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_YRI_INDEL_biallelic.no_monomorphic.vcf.gz 3368132 INDEL_biallelic 40273 108 hg38 X AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_YRI_SNP_multiallelic.no_monomorphic.vcf.gz 695212 SNP_multiallelic 8771 108 hg38 X AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/pop/X_AFR_YRI_INDEL_multiallelic.no_monomorphic.vcf.gz 342869 INDEL_multiallelic 2668 108 hg38 X AFR YRI /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EUR_SNP_biallelic.no_monomorphic.vcf.gz 84813016 SNP_biallelic 535748 503 hg38 X EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EUR_INDEL_biallelic.no_monomorphic.vcf.gz 7209349 INDEL_biallelic 33492 503 hg38 X EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AMR_SNP_biallelic.no_monomorphic.vcf.gz 71585636 SNP_biallelic 712910 347 hg38 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AMR_INDEL_biallelic.no_monomorphic.vcf.gz 6092167 INDEL_biallelic 42750 347 hg38 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EAS_SNP_biallelic.no_monomorphic.vcf.gz 70795971 SNP_biallelic 474248 504 hg38 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EAS_INDEL_biallelic.no_monomorphic.vcf.gz 6212937 INDEL_biallelic 29660 504 hg38 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AFR_SNP_biallelic.no_monomorphic.vcf.gz 193540505 SNP_biallelic 886523 661 hg38 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AFR_INDEL_biallelic.no_monomorphic.vcf.gz 13067389 INDEL_biallelic 44603 661 hg38 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_SAS_SNP_biallelic.no_monomorphic.vcf.gz 61571361 SNP_biallelic 386327 489 hg38 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_SAS_INDEL_biallelic.no_monomorphic.vcf.gz 6836064 INDEL_biallelic 31811 489 hg38 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EUR_SNP_multiallelic.no_monomorphic.vcf.gz 1747016 SNP_multiallelic 8771 503 hg38 X EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EUR_INDEL_multiallelic.no_monomorphic.vcf.gz 771991 INDEL_multiallelic 2668 503 hg38 X EUR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AMR_SNP_multiallelic.no_monomorphic.vcf.gz 1220042 SNP_multiallelic 8771 347 hg38 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AMR_INDEL_multiallelic.no_monomorphic.vcf.gz 568119 INDEL_multiallelic 2668 347 hg38 X AMR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EAS_SNP_multiallelic.no_monomorphic.vcf.gz 1655880 SNP_multiallelic 8771 504 hg38 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_EAS_INDEL_multiallelic.no_monomorphic.vcf.gz 735764 INDEL_multiallelic 2668 504 hg38 X EAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AFR_SNP_multiallelic.no_monomorphic.vcf.gz 2463297 SNP_multiallelic 8771 661 hg38 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_AFR_INDEL_multiallelic.no_monomorphic.vcf.gz 1103479 INDEL_multiallelic 2668 661 hg38 X AFR SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_SAS_SNP_multiallelic.no_monomorphic.vcf.gz 1756971 SNP_multiallelic 8771 489 hg38 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/X/X_SAS_INDEL_multiallelic.no_monomorphic.vcf.gz 767052 INDEL_multiallelic 2668 489 hg38 X SAS SUPER /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_SNP_multiallelic.no_monomorphic.vcf.gz 2715 SNP_multiallelic 0 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ASW_SNP_biallelic.no_monomorphic.vcf.gz 61869 SNP_biallelic 1801 26 hg38 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ASW_SNP_multiallelic.no_monomorphic.vcf.gz 2659 SNP_multiallelic 0 26 hg38 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ASW_INDEL_multiallelic.no_monomorphic.vcf.gz 2659 INDEL_multiallelic 0 26 hg38 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_SNP_biallelic.no_monomorphic.vcf.gz 84112 SNP_biallelic 2336 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_SNP_multiallelic.no_monomorphic.vcf.gz 2701 SNP_multiallelic 0 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_SNP_biallelic.no_monomorphic.vcf.gz 59768 SNP_biallelic 1668 44 hg38 Y EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_SNP_multiallelic.no_monomorphic.vcf.gz 2707 SNP_multiallelic 0 44 hg38 Y EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_CEU_SNP_biallelic.no_monomorphic.vcf.gz 57137 SNP_biallelic 1567 49 hg38 Y EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_CEU_SNP_multiallelic.no_monomorphic.vcf.gz 2729 SNP_multiallelic 0 49 hg38 Y EUR CEU /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHB_SNP_biallelic.no_monomorphic.vcf.gz 69698 SNP_biallelic 1889 46 hg38 Y EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHB_SNP_multiallelic.no_monomorphic.vcf.gz 2703 SNP_multiallelic 0 46 hg38 Y EAS CHB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHS_SNP_biallelic.no_monomorphic.vcf.gz 69057 SNP_biallelic 1886 52 hg38 Y EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CHS_SNP_multiallelic.no_monomorphic.vcf.gz 2728 SNP_multiallelic 0 52 hg38 Y EAS CHS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_CLM_SNP_biallelic.no_monomorphic.vcf.gz 72917 SNP_biallelic 2027 43 hg38 Y AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AMR_CLM_SNP_multiallelic.no_monomorphic.vcf.gz 2706 SNP_multiallelic 0 43 hg38 Y AMR CLM /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ESN_SNP_biallelic.no_monomorphic.vcf.gz 44315 SNP_biallelic 1254 53 hg38 Y AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ESN_SNP_multiallelic.no_monomorphic.vcf.gz 2731 SNP_multiallelic 0 53 hg38 Y AFR ESN /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_FIN_SNP_biallelic.no_monomorphic.vcf.gz 47392 SNP_biallelic 1303 38 hg38 Y EUR FIN 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/mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_INDEL_biallelic.no_monomorphic.vcf.gz 6092 INDEL_biallelic 62 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ACB_INDEL_multiallelic.no_monomorphic.vcf.gz 2715 INDEL_multiallelic 0 47 hg38 Y AFR ACB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_ASW_INDEL_biallelic.no_monomorphic.vcf.gz 5355 INDEL_biallelic 52 26 hg38 Y AFR ASW /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_INDEL_biallelic.no_monomorphic.vcf.gz 5435 INDEL_biallelic 49 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_BEB_INDEL_multiallelic.no_monomorphic.vcf.gz 2701 INDEL_multiallelic 0 42 hg38 Y SAS BEB /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_INDEL_biallelic.no_monomorphic.vcf.gz 4812 INDEL_biallelic 35 44 hg38 Y EAS CDX /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EAS_CDX_INDEL_multiallelic.no_monomorphic.vcf.gz 2707 INDEL_multiallelic 0 44 hg38 Y EAS CDX 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/mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_INDEL_biallelic.no_monomorphic.vcf.gz 5075 INDEL_biallelic 38 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_GIH_INDEL_multiallelic.no_monomorphic.vcf.gz 2729 INDEL_multiallelic 0 56 hg38 Y SAS GIH /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_INDEL_biallelic.no_monomorphic.vcf.gz 6181 INDEL_biallelic 62 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_AFR_GWD_INDEL_multiallelic.no_monomorphic.vcf.gz 2742 INDEL_multiallelic 0 55 hg38 Y AFR GWD /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_IBS_INDEL_biallelic.no_monomorphic.vcf.gz 5258 INDEL_biallelic 46 54 hg38 Y EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_EUR_IBS_INDEL_multiallelic.no_monomorphic.vcf.gz 2731 INDEL_multiallelic 0 54 hg38 Y EUR IBS /mnt/data/hannah/1kg_phase3/newVCFhg38/Y/pop/Y_SAS_ITU_INDEL_biallelic.no_monomorphic.vcf.gz 5194 INDEL_biallelic 42 59 hg38 Y SAS ITU 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