Browse FILER
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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.
For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.
| #Identifier | Data Source | Download file | Number of intervals | bp covered | Output type | Genome build | cell type | Biosample type | Biosamples term id | Tissue category | ENCODE Experiment id | Biological replicate(s) | Technical replicate | Antibody | Assay | File format | File size | Release date | Date added to FILER | Data Category | Genomic feature type | Track Description | system category | life stage | trackName |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NGEN024014 | ENCODE | Download | 182 | 2,293,220,138 | copy number variation | hg19 | A549 | Cell line | EFO:0001086 | Lung | ENCSR000AZV | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,401 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=A549;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeA549RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Respiratory | Unknown | ENCODE A549 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZV] [Orig: Biosample_summary=A549;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeA549RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024015 | ENCODE | Download | 102 | 2,271,977,901 | copy number variation | hg19 | AG04449 | Cell line | NTR:0000478 | Skin | ENCSR000AZW | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,908 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=AG04449;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg04449RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Integumentary | Unknown | ENCODE AG04449 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZW] [Orig: Biosample_summary=AG04449;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg04449RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024016 | ENCODE | Download | 102 | 2,134,184,579 | copy number variation | hg19 | AG04450 | Cell line | EFO:0006270 | Lung | ENCSR000AZX | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,896 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=AG04450;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeAg04450RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Respiratory | Unknown | ENCODE AG04450 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZX] [Orig: Biosample_summary=AG04450;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeAg04450RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024017 | ENCODE | Download | 98 | 2,310,613,494 | copy number variation | hg19 | AG09309 | Cell line | NTR:0000479 | Skin | ENCSR000AZY | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,855 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=AG09309;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg09309RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Integumentary | Unknown | ENCODE AG09309 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZY] [Orig: Biosample_summary=AG09309;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg09309RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024018 | ENCODE | Download | 93 | 2,410,705,335 | copy number variation | hg19 | AG09319 | Cell line | NTR:0000480 | Connective Tissue | ENCSR000AZZ | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,790 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=AG09319;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeAg09319RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Skeletal | Unknown | ENCODE AG09319 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZZ] [Orig: Biosample_summary=AG09319;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeAg09319RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024019 | ENCODE | Download | 100 | 2,245,709,181 | copy number variation | hg19 | AG10803 | Cell line | NTR:0000481 | Skin | ENCSR000BAB | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,880 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=AG10803;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg10803RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Integumentary | Unknown | ENCODE AG10803 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAB] [Orig: Biosample_summary=AG10803;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeAg10803RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024020 | ENCODE | Download | 214 | 2,484,002,039 | copy number variation | hg19 | Smooth muscle cell | Primary cell | CL:0002539 | Blood Vessel | ENCSR000BAC | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,927 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Aortic smooth muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeAosmcRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Smooth muscle cell;tissue_of_origin=Aortic;pre_origin_deriv_fix_system=Cardiovascular;pre_origin_deriv_fix_tissue=Blood Vessel | Cardiovascular | Unknown | ENCODE Smooth muscle cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAC] [Orig: Biosample_summary=Aortic smooth muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeAosmcRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Smooth muscle cell;tissue_of_origin=Aortic;pre_origin_deriv_fix_system=Cardiov |
| NGEN024021 | ENCODE | Download | 10,380 | 2,550,254,288 | copy number variation | hg19 | Jejunum | Tissue | UBERON:0002115 | Digestive | ENCSR000BAE | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 177,642 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Jejunum tissue male adult (71 years);Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeBcjejunumh12817nRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Adult | ENCODE Jejunum (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAE] [Orig: Biosample_summary=Jejunum tissue male adult (71 years);Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeBcjejunumh12817nRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Adult] |
| NGEN024022 | ENCODE | Download | 8,295 | 2,552,726,996 | copy number variation | hg19 | Small intestine | Tissue | UBERON:0002108 | Digestive | ENCSR000BAF | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 142,368 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Small intestine tissue female adult (83 years);Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeBcsmallintestine0111002RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Adult | ENCODE Small intestine (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAF] [Orig: Biosample_summary=Small intestine tissue female adult (83 years);Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeBcsmallintestine0111002RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Adult] |
| NGEN024023 | ENCODE | Download | 124 | 2,175,120,601 | copy number variation | hg19 | BJ | Cell line | EFO:0002779 | Connective Tissue | ENCSR000BAG | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,285 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=BJ;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeBjRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Skeletal | Unknown | ENCODE BJ (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAG] [Orig: Biosample_summary=BJ;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeBjRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024024 | ENCODE | Download | 309 | 2,362,277,348 | copy number variation | hg19 | Caco-2 | Cell line | EFO:0001099 | Digestive | ENCSR000BAI | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,626 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Caco-2;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeCaco2RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Unknown | ENCODE Caco-2 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAI] [Orig: Biosample_summary=Caco-2;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeCaco2RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024025 | ENCODE | Download | 270 | 2,240,239,086 | copy number variation | hg19 | Chorion | Tissue | UBERON:0003124 | Embryo | ENCSR000BAJ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,902 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Chorion tissue;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeChorionRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Embryo | Embryonic | ENCODE Chorion (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAJ] [Orig: Biosample_summary=Chorion tissue;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeChorionRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Embryonic] |
| NGEN024026 | ENCODE | Download | 209 | 2,288,594,655 | copy number variation | hg19 | CMK | Cell line | EFO:0003037 | Blood | ENCSR000BAH | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,867 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=CMK;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeCmkRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE CMK (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAH] [Orig: Biosample_summary=CMK;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeCmkRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024027 | ENCODE | Download | 115 | 2,313,062,800 | copy number variation | hg19 | GM06990 | Cell line | EFO:0002783 | Blood | ENCSR000BAK | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,152 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=GM06990;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm06990RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE GM06990 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAK] [Orig: Biosample_summary=GM06990;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm06990RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024028 | ENCODE | Download | 213 | 2,262,736,431 | copy number variation | hg19 | GM12891 | Cell line | EFO:0002785 | Blood | ENCSR000BAL | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,890 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=GM12891;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm12891RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE GM12891 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAL] [Orig: Biosample_summary=GM12891;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm12891RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024029 | ENCODE | Download | 81 | 2,262,184,326 | copy number variation | hg19 | GM12892 | Cell line | EFO:0002786 | Blood | ENCSR000BAM | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,531 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=GM12892;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm12892RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE GM12892 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAM] [Orig: Biosample_summary=GM12892;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm12892RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024030 | ENCODE | Download | 112 | 2,213,991,154 | copy number variation | hg19 | GM19239 | Cell line | EFO:0002789 | Blood | ENCSR000BAN | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,088 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=GM19239;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm19239RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE GM19239 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAN] [Orig: Biosample_summary=GM19239;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeGm19239RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024031 | ENCODE | Download | 109 | 2,288,628,087 | copy number variation | hg19 | H1-hESC | Stem cell | EFO:0003042 | Embryo | ENCSR000BAO | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,060 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=H1;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeH1hescRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell | Embryo | Embryonic | ENCODE H1-hESC (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAO] [Orig: Biosample_summary=H1;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeH1hescRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;old_system_category=Stem Cell;premapping_cell_type=H1-hESC;tissue_of_origin=Embryo;old_tissue_category=Stem Cell;old_biosample_type=Cell line;old_life_stage=Stem Cell] [L |
| NGEN024032 | ENCODE | Download | 102 | 2,270,471,973 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002536 | Embryo | ENCSR000BAP | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,918 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Amniotic epithelial cell;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHaeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Amniotic epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Amniotic | Embryo | Embryonic | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAP] [Orig: Biosample_summary=Amniotic epithelial cell;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHaeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Amniotic epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Amniotic] [L |
| NGEN024033 | ENCODE | Download | 155 | 2,177,954,818 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002536 | Embryo | ENCSR000BAP | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,884 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Amniotic epithelial cell;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHaeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Amniotic epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Amniotic | Embryo | Embryonic | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAP] [Orig: Biosample_summary=Amniotic epithelial cell;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHaeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Amniotic epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Amniotic] [L |
| NGEN024034 | ENCODE | Download | 101 | 2,431,950,743 | copy number variation | hg19 | Fibroblast | Primary cell | CL:0002548 | Heart | ENCSR000BAQ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,913 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Cardiac fibroblast;Lab=Richard Myers, HAIB;System=circulatory system;Submitted_track_name=wgEncodeHaibGenotypeHcfRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Cardiac fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Cardiac | Cardiovascular | Unknown | ENCODE Fibroblast (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAQ] [Orig: Biosample_summary=Cardiac fibroblast;Lab=Richard Myers, HAIB;System=circulatory system;Submitted_track_name=wgEncodeHaibGenotypeHcfRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Cardiac fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Cardiac] [Life stage: Unknown] |
| NGEN024035 | ENCODE | Download | 95 | 2,317,731,976 | copy number variation | hg19 | Fibroblast | Primary cell | CL:0002548 | Heart | ENCSR000BAQ | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,797 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Cardiac fibroblast;Lab=Richard Myers, HAIB;System=circulatory system;Submitted_track_name=wgEncodeHaibGenotypeHcfRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Cardiac fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Cardiac | Cardiovascular | Unknown | ENCODE Fibroblast (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAQ] [Orig: Biosample_summary=Cardiac fibroblast;Lab=Richard Myers, HAIB;System=circulatory system;Submitted_track_name=wgEncodeHaibGenotypeHcfRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Cardiac fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Cardiac] [Life stage: Unknown] |
| NGEN024036 | ENCODE | Download | 81 | 2,164,737,628 | copy number variation | hg19 | Cardiac muscle cell | Primary cell | CL:0000746 | Heart | ENCSR000BAR | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,550 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Cardiac muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeHcmRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE Cardiac muscle cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAR] [Orig: Biosample_summary=Cardiac muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeHcmRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024037 | ENCODE | Download | 131 | 2,302,090,128 | copy number variation | hg19 | Cardiac muscle cell | Primary cell | CL:0000746 | Heart | ENCSR000BAR | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,423 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Cardiac muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeHcmRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE Cardiac muscle cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAR] [Orig: Biosample_summary=Cardiac muscle cell;Lab=Richard Myers, HAIB;System=circulatory system,musculature;Submitted_track_name=wgEncodeHaibGenotypeHcmRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024038 | ENCODE | Download | 129 | 2,251,823,049 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0000706 | Brain | ENCSR000BAS | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,410 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Choroid plexus epithelial cell;Lab=Richard Myers, HAIB;System=circulatory system,central nervous system;Submitted_track_name=wgEncodeHaibGenotypeHcpeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Choroid plexus | Nervous | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAS] [Orig: Biosample_summary=Choroid plexus epithelial cell;Lab=Richard Myers, HAIB;System=circulatory system,central nervous system;Submitted_track_name=wgEncodeHaibGenotypeHcpeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial |
| NGEN024039 | ENCODE | Download | 116 | 2,340,440,127 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0000706 | Brain | ENCSR000BAS | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,165 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Choroid plexus epithelial cell;Lab=Richard Myers, HAIB;System=circulatory system,central nervous system;Submitted_track_name=wgEncodeHaibGenotypeHcpeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Choroid plexus | Nervous | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAS] [Orig: Biosample_summary=Choroid plexus epithelial cell;Lab=Richard Myers, HAIB;System=circulatory system,central nervous system;Submitted_track_name=wgEncodeHaibGenotypeHcpeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Choroid plexus epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial |
| NGEN024040 | ENCODE | Download | 106 | 2,256,909,926 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002252 | Digestive | ENCSR000BAT | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,990 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of esophagus;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeHeeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of esophagus;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Esophagus | Digestive | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAT] [Orig: Biosample_summary=Epithelial cell of esophagus;Lab=Richard Myers, HAIB;System=digestive system;Submitted_track_name=wgEncodeHaibGenotypeHeeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of esophagus;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Esophag |
| NGEN024041 | ENCODE | Download | 142 | 2,317,650,755 | copy number variation | hg19 | HEK293 | Cell line | EFO:0001182 | Kidney | ENCSR000BAU | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,674 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HEK293;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHek293RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Renal | Unknown | ENCODE HEK293 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAU] [Orig: Biosample_summary=HEK293;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHek293RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024042 | ENCODE | Download | 297 | 2,458,690,929 | copy number variation | hg19 | HeLa-S3 | Cell line | EFO:0002791 | Female Reproductive | ENCSR000BBE | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,421 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHelas3RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE HeLa-S3 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBE] [Orig: Biosample_summary=HeLa-S3;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHelas3RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024043 | ENCODE | Download | 428 | 2,509,550,242 | copy number variation | hg19 | HepG2 | Cell line | EFO:0001187 | Liver | ENCSR000BBN | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 7,683 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HepG2;Lab=Richard Myers, HAIB;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeHaibGenotypeHepg2RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Unknown | ENCODE HepG2 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBN] [Orig: Biosample_summary=HepG2;Lab=Richard Myers, HAIB;System=digestive system,exocrine system,endocrine system;Submitted_track_name=wgEncodeHaibGenotypeHepg2RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024044 | ENCODE | Download | 131 | 2,314,656,998 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002565 | Eye | ENCSR000BAV | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,417 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Iris pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHipeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Iris pigment epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Iris pigment | Sensory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAV] [Orig: Biosample_summary=Iris pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHipeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Iris pigment epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Iris pig |
| NGEN024045 | ENCODE | Download | 113 | 2,253,359,546 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002565 | Eye | ENCSR000BAV | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,109 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Iris pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHipeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Iris pigment epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Iris pigment | Sensory | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAV] [Orig: Biosample_summary=Iris pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHipeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Iris pigment epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Iris pig |
| NGEN024046 | ENCODE | Download | 163 | 2,384,309,437 | copy number variation | hg19 | HL-60 | Cell line | EFO:0002793 | Blood | ENCSR000BAW | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,013 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HL-60;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeHl60RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE HL-60 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAW] [Orig: Biosample_summary=HL-60;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeHl60RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024047 | ENCODE | Download | 89 | 2,434,318,048 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002327 | Breast | ENCSR000BAX | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,681 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Mammary epithelial cell female;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeHmecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Mammary epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Mammary | Reproductive | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAX] [Orig: Biosample_summary=Mammary epithelial cell female;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeHmecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Mammary epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_ |
| NGEN024048 | ENCODE | Download | 110 | 2,306,924,821 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002304 | Eye | ENCSR000BAY | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,080 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeHnpceRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Non-pigmented ciliary | Sensory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAY] [Orig: Biosample_summary=Non-pigmented ciliary epithelial cell;Lab=Richard Myers, HAIB;Submitted_track_name=wgEncodeHaibGenotypeHnpceRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Non-pigmented ciliary] [Life stage: Unknown] |
| NGEN024049 | ENCODE | Download | 136 | 2,030,207,816 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR000BAZ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,514 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of alveolus of lung;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeHpaeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung | Respiratory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAZ] [Orig: Biosample_summary=Epithelial cell of alveolus of lung;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeHpaeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung] [Life stage: Unknown |
| NGEN024050 | ENCODE | Download | 106 | 2,253,580,587 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0010003 | Lung | ENCSR000BAZ | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,968 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of alveolus of lung;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeHpaeRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung | Respiratory | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAZ] [Orig: Biosample_summary=Epithelial cell of alveolus of lung;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeHpaeRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Lung;old_tissue_category=Lung] [Life stage: Unknown |
| NGEN024051 | ENCODE | Download | 167 | 2,470,739,824 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002584 | Kidney | ENCSR000AZB | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,082 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Renal cortical epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHrceRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Renal cortical epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Renal cortical;pre_origin_deriv_fix_system=Renal;pre_origin_deriv_fix_tissue=Kidney | Renal | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZB] [Orig: Biosample_summary=Renal cortical epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHrceRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Renal cortical epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Re |
| NGEN024052 | ENCODE | Download | 170 | 2,495,913,865 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002584 | Kidney | ENCSR000AZB | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,173 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Renal cortical epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHrceRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Renal cortical epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Renal cortical;pre_origin_deriv_fix_system=Renal;pre_origin_deriv_fix_tissue=Kidney | Renal | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZB] [Orig: Biosample_summary=Renal cortical epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHrceRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Renal cortical epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Re |
| NGEN024053 | ENCODE | Download | 161 | 2,380,372,591 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002518 | Kidney | ENCSR000AZC | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,942 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Kidney epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHreRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Kidney epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Kidney;old_tissue_category=Kidney | Renal | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZC] [Orig: Biosample_summary=Kidney epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHreRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Kidney epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Kidney;old_tissue_c |
| NGEN024054 | ENCODE | Download | 283 | 2,431,508,594 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002518 | Kidney | ENCSR000AZC | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,159 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Kidney epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHreRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Kidney epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Kidney;old_tissue_category=Kidney | Renal | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZC] [Orig: Biosample_summary=Kidney epithelial cell;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeHreRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Kidney epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Kidney;old_tissue_c |
| NGEN024055 | ENCODE | Download | 106 | 2,260,015,091 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002586 | Eye | ENCSR000AZD | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,003 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Retinal pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHrpeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment | Sensory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZD] [Orig: Biosample_summary=Retinal pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHrpeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment] [Life stage: Unknown] |
| NGEN024056 | ENCODE | Download | 96 | 2,288,517,189 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002586 | Eye | ENCSR000AZD | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,817 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Retinal pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHrpeRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment | Sensory | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZD] [Orig: Biosample_summary=Retinal pigment epithelial cell;Lab=Richard Myers, HAIB;System=sensory system;Submitted_track_name=wgEncodeHaibGenotypeHrpeRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Retinal pigment] [Life stage: Unknown] |
| NGEN024057 | ENCODE | Download | 106 | 2,370,866,667 | copy number variation | hg19 | Myoblast | Primary cell | CL:0000515 | Skeletal Muscle | ENCSR000BBA | 3 | 3_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,981 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Skeletal muscle myoblast;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeHsmmRegionsRep3.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Myoblast;tissue_of_origin=Skeletal muscle | Muscular | Unknown | ENCODE Myoblast (repl. 3) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBA] [Orig: Biosample_summary=Skeletal muscle myoblast;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeHsmmRegionsRep3.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Myoblast;tissue_of_origin=Skeletal muscle] [Life stage: Unknown] |
| NGEN024058 | ENCODE | Download | 119 | 2,368,080,982 | copy number variation | hg19 | Myotube | In vitro differentiated cells | CL:0002372 | Skeletal Muscle | ENCSR000BBB | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,214 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Myotube originated from skeletal muscle myoblast;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeHsmmtRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Muscular | Unknown | ENCODE Myotube (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBB] [Orig: Biosample_summary=Myotube originated from skeletal muscle myoblast;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeHsmmtRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024059 | ENCODE | Download | 218 | 2,202,980,039 | copy number variation | hg19 | HTR-8/SVneo | Cell line | EFO:0005709 | Embryo | ENCSR000BBC | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,044 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HTR-8/SVneo;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHtr8RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Embryo | Embryonic | ENCODE HTR-8/SVneo (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBC] [Orig: Biosample_summary=HTR-8/SVneo;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHtr8RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Embryonic] |
| NGEN024060 | ENCODE | Download | 100 | 2,131,580,796 | copy number variation | hg19 | Endothelial cell | Primary cell | CL:0002618 | Umbilical Cord | ENCSR000BBD | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,888 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Richard Myers, HAIB;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHuvecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Endothelial cell;tissue_of_origin=Umbilical vein | Embryo | Newborn | ENCODE Endothelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBD] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Richard Myers, HAIB;System=circulatory system,reproductive system;Submitted_track_name=wgEncodeHaibGenotypeHuvecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_ |
| NGEN024061 | ENCODE | Download | 95 | 2,281,056,218 | copy number variation | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000AZE | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,789 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=IMR-90;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeImr90RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Respiratory | Unknown | ENCODE IMR-90 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZE] [Orig: Biosample_summary=IMR-90;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeImr90RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024062 | ENCODE | Download | 100 | 2,305,618,820 | copy number variation | hg19 | IMR-90 | Cell line | EFO:0001196 | Lung | ENCSR000AZE | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,896 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=IMR-90;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeImr90RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Respiratory | Unknown | ENCODE IMR-90 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZE] [Orig: Biosample_summary=IMR-90;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeImr90RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024063 | ENCODE | Download | 200 | 2,164,024,404 | copy number variation | hg19 | Jurkat clone E61 | Cell line | NTR:0003860 | Blood | ENCSR000AZF | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,690 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Jurkat, Clone E6-1;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeJurkatRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE Jurkat clone E61 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZF] [Orig: Biosample_summary=Jurkat, Clone E6-1;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeJurkatRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024064 | ENCODE | Download | 237 | 2,206,397,694 | copy number variation | hg19 | Jurkat clone E61 | Cell line | NTR:0003860 | Blood | ENCSR000AZF | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,353 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Jurkat, Clone E6-1;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeJurkatRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE Jurkat clone E61 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZF] [Orig: Biosample_summary=Jurkat, Clone E6-1;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeJurkatRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024065 | ENCODE | Download | 537 | 2,526,950,422 | copy number variation | hg19 | K562 | Cell line | EFO:0002067 | Blood | ENCSR000BBO | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 9,526 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=K562;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeK562RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE K562 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBO] [Orig: Biosample_summary=K562;Lab=Richard Myers, HAIB;System=immune system;Submitted_track_name=wgEncodeHaibGenotypeK562RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024066 | ENCODE | Download | 273 | 2,414,880,323 | copy number variation | hg19 | LNCaP clone FGC | Cell line | EFO:0005726 | Male Reproductive | ENCSR000AZG | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,913 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=LNCaP clone FGC;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeLncapRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE LNCaP clone FGC (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZG] [Orig: Biosample_summary=LNCaP clone FGC;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeLncapRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024067 | ENCODE | Download | 747 | 2,404,416,948 | copy number variation | hg19 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR000AZI | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 13,209 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF 10A (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZI] [Orig: Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024068 | ENCODE | Download | 185 | 2,459,959,468 | copy number variation | hg19 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR000AZI | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,409 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF 10A (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZI] [Orig: Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024069 | ENCODE | Download | 280 | 2,306,201,773 | copy number variation | hg19 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR000AZI | 3 | 3_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,091 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep3.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF 10A (repl. 3) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZI] [Orig: Biosample_summary=MCF 10A;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesRegionsRep3.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024070 | ENCODE | Download | 285 | 2,369,841,726 | copy number variation | hg19 | MCF 10A | Cell line | EFO:0001200 | Female Reproductive | ENCSR000AZJ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,192 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF 10A treated with 1 ?M afimoxifene for 36 hours;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesTamRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF 10A (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZJ] [Orig: Biosample_summary=MCF 10A treated with 1 ?M afimoxifene for 36 hours;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf10aesTamRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024071 | ENCODE | Download | 497 | 2,440,099,193 | copy number variation | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000AZH | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 9,031 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF-7;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf7RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF-7 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZH] [Orig: Biosample_summary=MCF-7;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf7RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024072 | ENCODE | Download | 506 | 2,435,172,598 | copy number variation | hg19 | MCF-7 | Cell line | EFO:0001203 | Breast | ENCSR000AZH | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 9,221 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=MCF-7;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf7RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE MCF-7 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZH] [Orig: Biosample_summary=MCF-7;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeMcf7RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024073 | ENCODE | Download | 217 | 2,319,184,250 | copy number variation | hg19 | Epidermal melanocyte | Primary cell | CL:2000000 | Skin | ENCSR000BBF | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,004 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epidermal melanocyte;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeMelanoRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Integumentary | Unknown | ENCODE Epidermal melanocyte (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBF] [Orig: Biosample_summary=Epidermal melanocyte;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeMelanoRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024074 | ENCODE | Download | 100 | 2,251,221,196 | copy number variation | hg19 | Epidermal melanocyte | Primary cell | CL:2000000 | Skin | ENCSR000BBF | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 1,860 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epidermal melanocyte;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeMelanoRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Integumentary | Unknown | ENCODE Epidermal melanocyte (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBF] [Orig: Biosample_summary=Epidermal melanocyte;Lab=Richard Myers, HAIB;System=integumental system;Submitted_track_name=wgEncodeHaibGenotypeMelanoRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024075 | ENCODE | Download | 229 | 2,097,753,559 | copy number variation | hg19 | hTERT-HM | Cell line | EFO:0005912 | Female Reproductive | ENCSR000BBG | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,171 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=HTERT-HM;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeMyometrRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=HTERT-HM;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE hTERT-HM (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBG] [Orig: Biosample_summary=HTERT-HM;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeMyometrRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=HTERT-HM;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024076 | ENCODE | Download | 254 | 2,656,757,114 | copy number variation | hg19 | NB4 | Cell line | EFO:0002798 | Blood | ENCSR000AZK | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,675 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=NB4;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeNb4RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE NB4 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZK] [Orig: Biosample_summary=NB4;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeNb4RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024077 | ENCODE | Download | 384 | 2,516,762,105 | copy number variation | hg19 | NB4 | Cell line | EFO:0002798 | Blood | ENCSR000AZK | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 6,966 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=NB4;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeNb4RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Cardiovascular | Unknown | ENCODE NB4 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZK] [Orig: Biosample_summary=NB4;Lab=Richard Myers, HAIB;System=skeletal system,immune system;Submitted_track_name=wgEncodeHaibGenotypeNb4RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024078 | ENCODE | Download | 119 | 2,401,146,215 | copy number variation | hg19 | Astrocyte | Primary cell | CL:0000127 | Brain | ENCSR000BAD | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,196 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaDukeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE Astrocyte (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BAD] [Orig: Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaDukeRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024079 | ENCODE | Download | 304 | 2,278,893,530 | copy number variation | hg19 | Astrocyte | Primary cell | CL:0000127 | Brain | ENCSR000AZL | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,391 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE Astrocyte (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZL] [Orig: Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024080 | ENCODE | Download | 209 | 2,437,904,742 | copy number variation | hg19 | Astrocyte | Primary cell | CL:0000127 | Brain | ENCSR000AZL | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,707 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE Astrocyte (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZL] [Orig: Biosample_summary=Astrocyte;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeNhaRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024081 | ENCODE | Download | 428 | 2,307,565,361 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002328 | Lung | ENCSR000AZM | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 7,456 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Bronchial epithelial cell female;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeNhbeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial | Respiratory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZM] [Orig: Biosample_summary=Bronchial epithelial cell female;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeNhbeRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bro |
| NGEN024082 | ENCODE | Download | 271 | 2,554,188,137 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002328 | Lung | ENCSR000AZM | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,739 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Bronchial epithelial cell female;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeNhbeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial | Respiratory | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZM] [Orig: Biosample_summary=Bronchial epithelial cell female;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeNhbeRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bro |
| NGEN024083 | ENCODE | Download | 195 | 2,314,910,745 | copy number variation | hg19 | Fibroblast | Primary cell | CL:1001608 | Skin | ENCSR000AZN | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,516 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Foreskin fibroblast male newborn;Lab=Richard Myers, HAIB;System=reproductive system,integumental system;Submitted_track_name=wgEncodeHaibGenotypeNhdfneoRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Foreskin fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_origin=Foreskin | Integumentary | Newborn | ENCODE Fibroblast (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZN] [Orig: Biosample_summary=Foreskin fibroblast male newborn;Lab=Richard Myers, HAIB;System=reproductive system,integumental system;Submitted_track_name=wgEncodeHaibGenotypeNhdfneoRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Foreskin fibroblast;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Fibroblast;tissue_of_or |
| NGEN024084 | ENCODE | Download | 282 | 2,435,913,053 | copy number variation | hg19 | NT2/D1 | Cell line | EFO:0005236 | Male Reproductive | ENCSR000AZO | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 5,153 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=NT2/D1;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeNt2d1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE NT2/D1 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZO] [Orig: Biosample_summary=NT2/D1;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeNt2d1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024085 | ENCODE | Download | 385 | 2,356,085,552 | copy number variation | hg19 | OVCAR3 | Cell line | EFO:0003061 | Female Reproductive | ENCSR000BBK | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 7,028 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=OVCAR3;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeOvcar3RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE OVCAR3 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBK] [Orig: Biosample_summary=OVCAR3;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypeOvcar3RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024086 | ENCODE | Download | 418 | 2,489,069,598 | copy number variation | hg19 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR000AZP | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 7,499 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Panc1;Lab=Richard Myers, HAIB;System=endocrine system;Submitted_track_name=wgEncodeHaibGenotypePanc1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Unknown | ENCODE Panc1 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZP] [Orig: Biosample_summary=Panc1;Lab=Richard Myers, HAIB;System=endocrine system;Submitted_track_name=wgEncodeHaibGenotypePanc1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024087 | ENCODE | Download | 224 | 2,527,209,790 | copy number variation | hg19 | Panc1 | Cell line | EFO:0002713 | Digestive | ENCSR000AZP | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,135 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Panc1;Lab=Richard Myers, HAIB;System=endocrine system;Submitted_track_name=wgEncodeHaibGenotypePanc1RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Digestive | Unknown | ENCODE Panc1 (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZP] [Orig: Biosample_summary=Panc1;Lab=Richard Myers, HAIB;System=endocrine system;Submitted_track_name=wgEncodeHaibGenotypePanc1RegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024088 | ENCODE | Download | 138 | 2,263,543,630 | copy number variation | hg19 | PFSK-1 | Cell line | EFO:0005234 | Brain | ENCSR000BBH | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,597 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=PFSK-1;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypePfsk1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE PFSK-1 (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBH] [Orig: Biosample_summary=PFSK-1;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypePfsk1RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024089 | ENCODE | Download | 155 | 2,384,772,521 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002231 | Male Reproductive | ENCSR000AZQ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,868 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of prostate;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypePrecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Prostate | Reproductive | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZQ] [Orig: Biosample_summary=Epithelial cell of prostate;Lab=Richard Myers, HAIB;System=reproductive system;Submitted_track_name=wgEncodeHaibGenotypePrecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of prostate;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Prost |
| NGEN024090 | ENCODE | Download | 114 | 2,160,498,620 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002306 | Kidney | ENCSR000AZR | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,149 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of proximal tubule;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeRptecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of proximal tubule;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Proximal tubule | Renal | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZR] [Orig: Biosample_summary=Epithelial cell of proximal tubule;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeRptecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of proximal tubule;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_ |
| NGEN024091 | ENCODE | Download | 111 | 2,205,495,186 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002306 | Kidney | ENCSR000AZR | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,082 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Epithelial cell of proximal tubule;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeRptecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of proximal tubule;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Proximal tubule | Renal | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZR] [Orig: Biosample_summary=Epithelial cell of proximal tubule;Lab=Richard Myers, HAIB;System=excretory system;Submitted_track_name=wgEncodeHaibGenotypeRptecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Epithelial cell of proximal tubule;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_ |
| NGEN024092 | ENCODE | Download | 140 | 2,432,732,878 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002328 | Lung | ENCSR000AZS | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,609 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Bronchial epithelial cell;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeSaecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial | Respiratory | Unknown | ENCODE Epithelial cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZS] [Orig: Biosample_summary=Bronchial epithelial cell;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeSaecRegionsRep1.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial] |
| NGEN024093 | ENCODE | Download | 207 | 2,438,043,333 | copy number variation | hg19 | Epithelial cell | Primary cell | CL:0002328 | Lung | ENCSR000AZS | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,814 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Bronchial epithelial cell;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeSaecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial | Respiratory | Unknown | ENCODE Epithelial cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZS] [Orig: Biosample_summary=Bronchial epithelial cell;Lab=Richard Myers, HAIB;System=respiratory system;Submitted_track_name=wgEncodeHaibGenotypeSaecRegionsRep2.bedLogR.bigBed;previous_filer_cell_type=Bronchial epithelial cell;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19;premapping_cell_type=Epithelial cell;tissue_of_origin=Bronchial] |
| NGEN024094 | ENCODE | Download | 116 | 2,435,184,848 | copy number variation | hg19 | Skeletal muscle cell | Primary cell | CL:0000188 | Skeletal Muscle | ENCSR000AZU | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,168 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Skeletal muscle cell;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeSkmcRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Muscular | Unknown | ENCODE Skeletal muscle cell (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZU] [Orig: Biosample_summary=Skeletal muscle cell;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeSkmcRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024095 | ENCODE | Download | 133 | 2,208,125,310 | copy number variation | hg19 | Skeletal muscle cell | Primary cell | CL:0000188 | Skeletal Muscle | ENCSR000AZU | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,497 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=Skeletal muscle cell;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeSkmcRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Muscular | Unknown | ENCODE Skeletal muscle cell (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZU] [Orig: Biosample_summary=Skeletal muscle cell;Lab=Richard Myers, HAIB;System=musculature;Submitted_track_name=wgEncodeHaibGenotypeSkmcRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024096 | ENCODE | Download | 124 | 2,369,832,921 | copy number variation | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000AZT | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,302 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeSknshraRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE SK-N-SH (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZT] [Orig: Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeSknshraRegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024097 | ENCODE | Download | 162 | 2,371,783,365 | copy number variation | hg19 | SK-N-SH | Cell line | EFO:0003072 | Brain | ENCSR000AZT | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 2,981 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeSknshraRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE SK-N-SH (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000AZT] [Orig: Biosample_summary=SK-N-SH treated with 6 ?M all-trans-retinoic acid for 48 hours;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeSknshraRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024098 | ENCODE | Download | 254 | 2,392,947,046 | copy number variation | hg19 | T47D | Cell line | EFO:0001247 | Female Reproductive | ENCSR000BBI | 2 | 2_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 4,620 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=T47D;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeT47dRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Reproductive | Unknown | ENCODE T47D (repl. 2) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBI] [Orig: Biosample_summary=T47D;Lab=Richard Myers, HAIB;System=integumental system,exocrine system;Submitted_track_name=wgEncodeHaibGenotypeT47dRegionsRep2.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
| NGEN024099 | ENCODE | Download | 194 | 2,211,270,292 | copy number variation | hg19 | U-87 MG | Cell line | EFO:0005237 | Brain | ENCSR000BBJ | 1 | 1_1 | Not applicable | CGH [comparative genomic hybridization by array] | bed bedLogR | 3,621 | 1/20/11 | 07/16/20 | Copy number variation | CGH [comparative genomic hybridization by array] copy number variation | Biosample_summary=U-87 MG;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeU87RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19 | Nervous | Unknown | ENCODE U-87 MG (repl. 1) CGH [comparative genomic hybridization by array] copy number variation (bedLogR) [Experiment: ENCSR000BBJ] [Orig: Biosample_summary=U-87 MG;Lab=Richard Myers, HAIB;System=central nervous system;Submitted_track_name=wgEncodeHaibGenotypeU87RegionsRep1.bedLogR.bigBed;Experiment_date_released=08/16/2011;File_analysis_title=Lab custom hg19] [Life stage: Unknown] |
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